Metagenome / Metatranscriptome Family F095119

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095119
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	70 residues
Representative Sequence	MWRWLNALPLGMKLYFWFWTVLVPAGVALLLAGLVVPGLVLLGCFVFDQAVFTPLIVARSQKQKRATPPSP
Number of Associated Samples	79
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	56.19 %
% of genes near scaffold ends (potentially truncated)	21.90 %
% of genes from short scaffolds (< 2000 bps)	84.76 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.143 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (32.381 % of family members)
Environment Ontology (ENVO)	Unclassified (26.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.810 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.62% β-sheet: 0.00% Coil/Unstructured: 38.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF12680	SnoaL_2	9.52
PF02502	LacAB_rpiB	6.67
PF01728	FtsJ	4.76
PF03060	NMO	1.90
PF07992	Pyr_redox_2	1.90
PF00248	Aldo_ket_red	1.90
PF01479	S4	1.90
PF00685	Sulfotransfer_1	1.90
PF01872	RibD_C	1.90
PF08245	Mur_ligase_M	0.95
PF02219	MTHFR	0.95
PF00291	PALP	0.95
PF09851	SHOCT	0.95
PF12850	Metallophos_2	0.95
PF06737	Transglycosylas	0.95
PF07676	PD40	0.95
PF13824	zf-Mss51	0.95
PF00268	Ribonuc_red_sm	0.95
PF00378	ECH_1	0.95
PF01740	STAS	0.95
PF13466	STAS_2	0.95
PF02771	Acyl-CoA_dh_N	0.95
PF13602	ADH_zinc_N_2	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0698	Ribose 5-phosphate isomerase RpiB	Carbohydrate transport and metabolism [G]	6.67
COG0293	23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ	Translation, ribosomal structure and biogenesis [J]	4.76
COG1189	Predicted rRNA methylase YqxC, contains S4 and FtsJ domains	Translation, ribosomal structure and biogenesis [J]	4.76
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.90
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	1.90
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.90
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	1.90
COG0208	Ribonucleotide reductase beta subunit, ferritin-like domain	Nucleotide transport and metabolism [F]	0.95
COG0685	5,10-methylenetetrahydrofolate reductase	Amino acid transport and metabolism [E]	0.95
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.14 %
Unclassified	root	N/A	42.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.14 %
Unclassified	root	N/A	42.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.14 %
Unclassified	root	N/A	42.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.86 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	41.90 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	39.05 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.76 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.86 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14.29 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	5.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.76 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.95 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.86 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	12.38 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.76 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3.81 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.95 %
Actinobacteria bacterium 13_1_20CM_3_68_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	0.95 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.95 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.86 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.38 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.76 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.95 %
Actinospicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	0.95 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.95 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.95 %
Actinobacteria bacterium 13_1_20CM_3_68_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.86 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.38 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.76 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.95 %
Actinospica	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica	0.95 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.95 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.95 %
Actinobacteria bacterium 13_1_20CM_3_68_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.86 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.38 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.76 %
unclassified Actinospica	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → unclassified Actinospica	0.95 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	0.95 %
unclassified Myxococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae	0.95 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	0.95 %
Actinobacteria bacterium 13_1_20CM_3_68_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.86 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.38 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.76 %
Actinospica sp. MGRD01-02	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → unclassified Actinospica → Actinospica sp. MGRD01-02	0.95 %
Myxococcaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	0.95 %
Solirubrobacter sp. CPCC 204708	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. CPCC 204708	0.95 %
Arthrobacter sp. Hiyo6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. Hiyo6	0.95 %
Actinobacteria bacterium 13_1_20CM_3_68_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_100889755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2224	Open in IMG/M
3300000956\|JGI10216J12902_101519064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → unclassified Actinospica → Actinospica sp. MGRD01-02	1166	Open in IMG/M
3300000956\|JGI10216J12902_107589174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	909	Open in IMG/M
3300000956\|JGI10216J12902_107662538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2487	Open in IMG/M
3300000956\|JGI10216J12902_108624793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1194	Open in IMG/M
3300002568\|C688J35102_118775909	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300002568\|C688J35102_120956489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3063	Open in IMG/M
3300004114\|Ga0062593_101530850	Not Available	720	Open in IMG/M
3300004114\|Ga0062593_102008290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	642	Open in IMG/M
3300004156\|Ga0062589_100121954	All Organisms → cellular organisms → Bacteria	1719	Open in IMG/M
3300004156\|Ga0062589_101444764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	673	Open in IMG/M
3300004156\|Ga0062589_101467728	Not Available	669	Open in IMG/M
3300004157\|Ga0062590_100587461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	975	Open in IMG/M
3300004157\|Ga0062590_101360905	Not Available	703	Open in IMG/M
3300004157\|Ga0062590_102073340	Not Available	592	Open in IMG/M
3300004463\|Ga0063356_100944691	Not Available	1224	Open in IMG/M
3300004479\|Ga0062595_102520821	Not Available	513	Open in IMG/M
3300005093\|Ga0062594_100683431	Not Available	922	Open in IMG/M
3300005180\|Ga0066685_10118362	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1783	Open in IMG/M
3300005186\|Ga0066676_10893639	Not Available	596	Open in IMG/M
3300005353\|Ga0070669_102050833	Not Available	500	Open in IMG/M
3300005356\|Ga0070674_101635973	Not Available	581	Open in IMG/M
3300005451\|Ga0066681_10254829	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1065	Open in IMG/M
3300005560\|Ga0066670_10427138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	815	Open in IMG/M
3300005560\|Ga0066670_10922835	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300005576\|Ga0066708_10867977	Not Available	564	Open in IMG/M
3300005598\|Ga0066706_11187217	Not Available	580	Open in IMG/M
3300005937\|Ga0081455_10038061	All Organisms → cellular organisms → Bacteria	4262	Open in IMG/M
3300006034\|Ga0066656_10399311	All Organisms → cellular organisms → Bacteria → Terrabacteria group	890	Open in IMG/M
3300006058\|Ga0075432_10557224	Not Available	519	Open in IMG/M
3300006806\|Ga0079220_12156575	Not Available	500	Open in IMG/M
3300006852\|Ga0075433_10038932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4109	Open in IMG/M
3300006854\|Ga0075425_101397365	Not Available	792	Open in IMG/M
3300006854\|Ga0075425_101468204	Not Available	770	Open in IMG/M
3300006904\|Ga0075424_101597155	Not Available	691	Open in IMG/M
3300006914\|Ga0075436_100371671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1033	Open in IMG/M
3300006918\|Ga0079216_11414782	Not Available	576	Open in IMG/M
3300009012\|Ga0066710_100178673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2995	Open in IMG/M
3300009012\|Ga0066710_101563666	Not Available	1013	Open in IMG/M
3300009098\|Ga0105245_10538567	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300009100\|Ga0075418_12179283	Not Available	604	Open in IMG/M
3300009147\|Ga0114129_10131227	All Organisms → cellular organisms → Bacteria	3441	Open in IMG/M
3300009147\|Ga0114129_10306114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2117	Open in IMG/M
3300009147\|Ga0114129_12482065	Not Available	620	Open in IMG/M
3300009156\|Ga0111538_10405196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1728	Open in IMG/M
3300009176\|Ga0105242_11696614	Not Available	668	Open in IMG/M
3300009545\|Ga0105237_11627638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	653	Open in IMG/M
3300009840\|Ga0126313_10062249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2663	Open in IMG/M
3300010039\|Ga0126309_10549688	Not Available	719	Open in IMG/M
3300012198\|Ga0137364_10323752	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1147	Open in IMG/M
3300012198\|Ga0137364_10841289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	694	Open in IMG/M
3300012200\|Ga0137382_10892685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	641	Open in IMG/M
3300012204\|Ga0137374_10579773	Not Available	858	Open in IMG/M
3300012356\|Ga0137371_11327440	Not Available	531	Open in IMG/M
3300012469\|Ga0150984_110685756	Not Available	715	Open in IMG/M
3300012924\|Ga0137413_11292245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. CPCC 204708	585	Open in IMG/M
3300012951\|Ga0164300_10031088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. Hiyo6	1960	Open in IMG/M
3300012951\|Ga0164300_10102368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1260	Open in IMG/M
3300012955\|Ga0164298_10304935	Not Available	988	Open in IMG/M
3300012958\|Ga0164299_10078791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1645	Open in IMG/M
3300012958\|Ga0164299_10085424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1597	Open in IMG/M
3300012960\|Ga0164301_10717602	Not Available	754	Open in IMG/M
3300012961\|Ga0164302_10123740	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1476	Open in IMG/M
3300012975\|Ga0134110_10032995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2026	Open in IMG/M
3300012984\|Ga0164309_10437205	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	986	Open in IMG/M
3300012986\|Ga0164304_11231988	Not Available	606	Open in IMG/M
3300012987\|Ga0164307_10355729	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300012989\|Ga0164305_10502200	Not Available	954	Open in IMG/M
3300014157\|Ga0134078_10288752	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	701	Open in IMG/M
3300015077\|Ga0173483_10214903	Not Available	894	Open in IMG/M
3300017654\|Ga0134069_1162248	Not Available	751	Open in IMG/M
3300017997\|Ga0184610_1295102	Not Available	534	Open in IMG/M
3300018027\|Ga0184605_10225019	Not Available	852	Open in IMG/M
3300018051\|Ga0184620_10268446	Not Available	573	Open in IMG/M
3300018061\|Ga0184619_10025450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2461	Open in IMG/M
3300018061\|Ga0184619_10071740	All Organisms → cellular organisms → Bacteria	1531	Open in IMG/M
3300018061\|Ga0184619_10185954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	953	Open in IMG/M
3300018422\|Ga0190265_10023432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4978	Open in IMG/M
3300018469\|Ga0190270_10001711	All Organisms → cellular organisms → Bacteria	10351	Open in IMG/M
3300018482\|Ga0066669_10454251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1100	Open in IMG/M
3300019362\|Ga0173479_10434366	Not Available	643	Open in IMG/M
3300022756\|Ga0222622_10521606	Not Available	851	Open in IMG/M
3300025927\|Ga0207687_10389247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1144	Open in IMG/M
3300025927\|Ga0207687_11270730	Not Available	633	Open in IMG/M
3300025934\|Ga0207686_10798918	Not Available	756	Open in IMG/M
3300026324\|Ga0209470_1356419	Not Available	524	Open in IMG/M
3300028722\|Ga0307319_10020830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2008	Open in IMG/M
3300028744\|Ga0307318_10082590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1079	Open in IMG/M
3300028771\|Ga0307320_10019956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2418	Open in IMG/M
3300028771\|Ga0307320_10249207	Not Available	700	Open in IMG/M
3300028784\|Ga0307282_10036326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2153	Open in IMG/M
3300028787\|Ga0307323_10157064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	821	Open in IMG/M
3300028791\|Ga0307290_10065981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1311	Open in IMG/M
3300028793\|Ga0307299_10090051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1144	Open in IMG/M
3300028819\|Ga0307296_10063161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1964	Open in IMG/M
3300028819\|Ga0307296_10122540	Not Available	1398	Open in IMG/M
3300028819\|Ga0307296_10331547	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	831	Open in IMG/M
3300028824\|Ga0307310_10555388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	582	Open in IMG/M
3300028828\|Ga0307312_10201595	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300028828\|Ga0307312_10575786	Not Available	745	Open in IMG/M
3300028878\|Ga0307278_10497309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	533	Open in IMG/M
3300028881\|Ga0307277_10146680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1022	Open in IMG/M
3300028884\|Ga0307308_10088281	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1473	Open in IMG/M
3300028884\|Ga0307308_10512886	Not Available	575	Open in IMG/M
3300031092\|Ga0308204_10107109	Not Available	779	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.05%
Host-Associated	Host-Associated	20.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.38%
Plants	Host-Associated → Plants	20.95%
Aquatic	Environmental → Aquatic	6.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.38%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.05%
Sediment	Environmental → Aquatic → Sediment	6.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.86%
Loam	Environmental → Terrestrial → Soil → Loam	1.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.19%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	32.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.33%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	9.52%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.86%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.95%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.95%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.95%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1008897553	3300000956	Soil	MWRWLNALPLGMKLYFWFWTVLVPAGVALLLAGLVVPGLVLLGCFVFDQAVFTPLIVARSQKQKRATPPSP*
JGI10216J12902_1015190642	3300000956	Soil	MWRWWNSLPLGTRLYFAFWTALIPAGVALLLVGAVVPGLVLLACFVFDQAVVTPLLMARSQRQRRANR*
JGI10216J12902_1075891742	3300000956	Soil	MAWLKELPLGFGPHFWFWTLFVPAGVALLFAGPVVPGLVLLGLFVVDQAVFVPLVVARRQKRKRARQSGK
JGI10216J12902_1076625381	3300000956	Soil	VWRRINELPLGLRLYSLFWTLFLPAGVILVLAGAVVPGLVLLVLFVFDHAVFTPLIVARSQKRDRAKRRRK*
JGI10216J12902_1086247932	3300000956	Soil	MRRIGIVRRWLRGLPLGLRLYFWFWTLLVPAGLVLLFAGLVVPGLVLLGMFVIDQAIFTPLIVARSQRHPRS*
C688J35102_1187759092	3300002568	Soil	MRRFLRELPLGTKLYFAFWTVLVPTGVALLLAGATVPGLILLVLFLFDQAVFTPLIAARTKRRR*
C688J35102_1209564892	3300002568	Soil	MRWLNDLPLGFRLYFWFWTLFIPAGVALLLAGAVVPGLALLVLFVLDQAIFVPLMVARSERQKRAGSSQRRGP*
Ga0062593_1015308501	3300004114	Soil	MWRWLHELPLGMKLYFWFWTVLVPTGVALLLAGAVVPGLVLLVCFVFDQAVFTPLIVARSQRRKRVMPPSP*
Ga0062593_1020082902	3300004114	Soil	MPTWAFPRSIKDMWRWLNSLPLGMKLYFWFWTVLVPTGLVLLLVGAVLPGLVLLICFVFDQAVFTPLIVARAQRQNRANR*
Ga0062589_1001219544	3300004156	Soil	MWRWLNALPLGMKLYFWFWTVLVPAGVALLLAGVVVPGLVLLLCFVFDQAVFTPLIVARAQRQKRVTPPSP*
Ga0062589_1014447642	3300004156	Soil	MWRWLSSLPLGMKLYFWFWTVLVPAGVALLLAGAVVPGIVLLVCFVFDQAVFTPLIVARSQRQKRVTPPSP
Ga0062589_1014677281	3300004156	Soil	MWRWLNSLPLGMKLYFWMWTVLVPTGLALLFVGAVLPGLVLLICFVFDQAVFTPLIVARAQRQNRATR*
Ga0062590_1005874612	3300004157	Soil	MWHWLSSLPLGMKLYFWFWTVLVPAGVALLLAGAVVPGIVLLVCFVFDQAVFTPLIVARSQRQKRVTPPSP*
Ga0062590_1013609051	3300004157	Soil	MWRRINELPLGMRLYTFFWTLLVPVGVVLVLAGAVVPGLVLLVLFVFDQAVFTPLIVARSQKQNRAKRRSE*
Ga0062590_1020733402	3300004157	Soil	MWRWLNSLPLGMKLYFWFWTVLVPTGLALLLAGAVVPGLVMLICFVFDQAVITPLIVARAQRQNRP*
Ga0063356_1009446912	3300004463	Arabidopsis Thaliana Rhizosphere	MWRWLNSLPLGMKLYFWFWTVLVPTGVALLVAGAVVPGLVLLIWFVFDQAIVTPLLVARSQKQNRASR*
Ga0062595_1025208211	3300004479	Soil	LEGMWRWLNFLPLGMKLYFWLWTVLVPTGLALLLAGAVVPGLVLLICFVFDQAVFTPLIVARAQRQKRVTPPSP*
Ga0062594_1006834312	3300005093	Soil	MWRWLNALPLGMKVYFWFWTVLVPAGVALLLAGVVMPGLVLLLCFVFDQAVFTPLIVARAQRQKRVTPPSP*
Ga0066685_101183621	3300005180	Soil	MRWLNELPLGFRLYFWIWTLFVPAGVALVLAGAVVPGLVLLVLFVLDQAIFVPLMVARSQRQKRAGSDDRR*
Ga0066676_108936391	3300005186	Soil	MRWLNELPLGFRLYFWIWTLFVPAGAALVLAGAVVPGLVLLVLFVLDQAIFVPLMVARSQRQKRAGSDDRR*
Ga0070669_1020508331	3300005353	Switchgrass Rhizosphere	MRIWRWLSSLPLGMKLYFWFWTVLVPAGVALLLAGAVVPGLVLLVCFVFDQAVFTPLIVARSQRQKRVTPPSP*
Ga0070674_1016359731	3300005356	Miscanthus Rhizosphere	MWRWLNALPLGMKLYFWFWTVLVPAGVALLLAGVVMPGLVLLLCFVFDQAVFTPLIVARAQRQKRVTPPSP*
Ga0066681_102548292	3300005451	Soil	MWRRINELPLGLRLYTLFWTLFLPAGVALVFAGAVVPGLVLLVLFVIDQAFFTPLIVARSQKRWAKR*
Ga0066670_104271381	3300005560	Soil	MWRWLNSLPLGMKLYFWLWTVLVPTGLALLLVGAVVPGLVLLICFVFDQAVFTPLIVARAQRQNRANR*
Ga0066670_109228352	3300005560	Soil	MRWLNELPLGFRLYFWIWTLFVPAGVALVLVGAVVPGLVLLVLFVLDQAIFVPLMVA
Ga0066708_108679771	3300005576	Soil	MAWLKELPLGFRLYFWFWTLFVPAGVALLFAGAVVPGLVLLGLFVVDQAVFVPLVVARRQKQKRARQSGKRSYPVHPGGPD*
Ga0066706_111872172	3300005598	Soil	MAWLKELPLGFRLYFWFWTLFVPAGVALLFAGAVVPGLVLLGLFVVDQAVFVPLVVARRQKQERARQSGKRSYPAHPGGPD
Ga0081455_100380613	3300005937	Tabebuia Heterophylla Rhizosphere	MWRWWKALPLGVQLYFFFWTLWIPAGVALLFAGAVVPGLLLLAFFVFDHAFVTPLVVARSQRRSRAKQ*
Ga0066656_103993111	3300006034	Soil	MRWLDQLPLGFRLYFWIWTLFVPAGVALVLAGAVVPGLVLLVLFVLDQAIFVPLMVARSQRQKRAGSDDRR*
Ga0075432_105572242	3300006058	Populus Rhizosphere	MWRWLSSLPLGMKLYFWFWTVLVPAGVALLLAGAVVPGIVLLVCFVFDQAVFTPLIVARSQRQKRVTPPSP*
Ga0079220_121565751	3300006806	Agricultural Soil	TQPAHLETPPRSLEGMWRWLNSLPLGMKLYFWLWTVLVPTGLALLFAGAVVPGLVLLICFVFDQAVFTPLIVARAHRQNRANQ*
Ga0075433_100389321	3300006852	Populus Rhizosphere	MRMWRWLSSLPLGMKLYFWFWTVLVPAGVALLLAGAVVPGLVLLVCFVFDQAVFMPLIVARSQRQKRVTPPSP*
Ga0075425_1013973651	3300006854	Populus Rhizosphere	MWRWLNSLPLGMKLYFWLWTVLVPTGLALLLAGAVVPGLVLLICFVFDQAVFTPLIVAR
Ga0075425_1014682042	3300006854	Populus Rhizosphere	MRMWRWLSSLPLGMKLYFWFWTVLVPAGVALLLAGAVVPGIVLLVCFVFDQAVFTPLIVARSQRQKRVTPPSP*
Ga0075424_1015971551	3300006904	Populus Rhizosphere	ARRLDRMRMWRWLSSLPLGMKLYFWFWTVLVPAGVALLLAGAVVPGIVLLVCFVFDQAVFTPLIVARSQRQKRVTPPSP*
Ga0075436_1003716713	3300006914	Populus Rhizosphere	MRMWRWLSSLPLGMKLYFWFWTVLVPAGVALLLAGAVVPGLVLLVCFVFDQAVFTPLIVARSQRQKRVTPPSP*
Ga0079216_114147822	3300006918	Agricultural Soil	MRWLNELPLGFRLYFWFWTLLVPTGVALLLAGAVVPGLVLLVLFVLDQAIFVPLIVARTQRQKRGDSDQD*
Ga0066710_1001786733	3300009012	Grasslands Soil	MRWLDQLPLGFRLYFWIWTLFVPAGVALVLAGAVVPGLVLLVLFVLDQAIFVPLMVARSQRQKRAGSDDRR
Ga0066710_1015636662	3300009012	Grasslands Soil	MRWLNELPLGFRLYFWIWTLFVPAGAALVLAGAVVPGLVLLVLFVLDQAIFVPLMVARSQRQKRAGSDDRQ
Ga0105245_105385672	3300009098	Miscanthus Rhizosphere	MKRLKPLWRELPLGTKLYFGFWTVLVPAGVALVLLGAVVPGLILLVLFLFDQAIFTPLIAARTRRRR*
Ga0075418_121792831	3300009100	Populus Rhizosphere	WLKELPPGFQLYFWLWTLLVPAGVALLLVGAVVPGLVMLGLFVLEQAVFVPLVVARSQRQKRDGARQN*
Ga0114129_101312273	3300009147	Populus Rhizosphere	MRWLKELPPGFQLYFWLWTLLVPAGVALLLVGAVVPGLVMLGLFVLEQAVFVPLVVARSQRQKRDGARQN*
Ga0114129_103061142	3300009147	Populus Rhizosphere	MRMWRWLSSLPLGMKLYFWFWTVLVPAGVALLLAGAVVPGIVLLVCFVFDQAVFTPLIVARSQRQKRVPPPSP*
Ga0114129_124820651	3300009147	Populus Rhizosphere	MWQWLNSLPLGMKLYFWLWTVLVPTGLALLLAGAVVPGLVLLICFVFDQAVFTPLIVARAQRQNRANR*
Ga0111538_104051961	3300009156	Populus Rhizosphere	MWRWLNSLPLGMKLYFWFWTVLVPTGVGLLVAGAVVPGLVLLIWFVFDQAIVTPLLVARSQKQNRASR*
Ga0105242_116966141	3300009176	Miscanthus Rhizosphere	MKLYFWFWTVLVPAGVALLLAGVVMPGLVLLLCFVFDQAVFTPLIVARAQRQKRVTPPSP
Ga0105237_116276381	3300009545	Corn Rhizosphere	MLDRMRMWRWLSSLPLGMKLYFWFWTVLVPTGVALLLVGAVVPGLVLLLCFVFDQAVFTPLIVARSQRRKRVSPPSP*
Ga0126313_100622493	3300009840	Serpentine Soil	MRWLNELPLGFRLYFWFWTLFVPAGVALLLAGAVVPGLVLLVLFVLDQAVFVPLIVARSQRRKRAAGQHRAP*
Ga0126309_105496882	3300010039	Serpentine Soil	MRWLKELPLGFQLYFWFWTLFVPAGVVLLFAGAVVPGLVLLGLFVLDQAAFVPLMVARTERQRRSETRQD*
Ga0137364_103237521	3300012198	Vadose Zone Soil	MRWLNELPLGFRLYFWFWTLFVPAGVVLLLAGAVVPGLVLLVLFVLDQAVFVPLMVARSQ
Ga0137364_108412892	3300012198	Vadose Zone Soil	MWRWINKFPLGLRLYYLFWTLFVPAGVVLVLAGAVVPGLILLVLFVFDQAVFTPLIVARSQRRNRTK
Ga0137382_108926852	3300012200	Vadose Zone Soil	MIRYVRRLRTFHRWLGRQPLGLRLYFWFWTLMVPTGLALLFAGLVVPGLVLLVMFMIDQAVFTPLIVARSQKRHRH*
Ga0137374_105797731	3300012204	Vadose Zone Soil	MWRRINGLPLGLRLYALFWTLFLPAGVILVLAGAVIPGLVLLVLFVFDQAVFTPWIVARSQKQDRAKRRSG*
Ga0137371_113274401	3300012356	Vadose Zone Soil	MSWLKELPLGFRLYFWFWTLFVPAGLALLFAGAVVPGLVLLGLFVVDQAVFVPLVVARRQKQKRAR
Ga0150984_1106857562	3300012469	Avena Fatua Rhizosphere	MRWLNDLPLGFRLYFWFWTLFIPAGVALLLAGAVVPGLALLVLFVLDQAIFVPLMVSRSERQKRAGSSQRRGP*
Ga0137413_112922451	3300012924	Vadose Zone Soil	WLRTLPLGTQLYFAFWTALVPTGVALVLAGATLPGLALLVLFLFDQAVFVPLIAARTRNRNRSSGH*
Ga0164300_100310882	3300012951	Soil	MWRWLNALPLGMKLYFWFWTVLVPAGVALLIAGVVMPGRVLLLCFVFDQAVSTPLIVARAQRQKRVTPPSP*
Ga0164300_101023682	3300012951	Soil	MWRRINELPLGMRLYTLFWTLLVPAGVVLVLAGAVVPGLVLLVLFVFDQAVFTPLIVARSQKQKRAKRRSE*
Ga0164298_103049352	3300012955	Soil	MRLYTLFWTLLVPAGVVLVLAGAVVPGLVLLVLFVFDQAVFTPLIVARSQKQKRAKRRSE
Ga0164299_100787912	3300012958	Soil	MWRWLNALPLGMKLYFWFWTVLVPAGVALLIAGVVMPGLVLLLCFVFDQAVFTPLIVARAQRQKRVTPPSP*
Ga0164299_100854243	3300012958	Soil	MWRRINELPLGMRLYTLFWTLLVPAGVVLVLAGAVVPGLVLLVLFVFDQAVFTPLI
Ga0164301_107176021	3300012960	Soil	MWRWLNALPLRMKLYFWFWTVLVPAGVALLIAGVVMPGLVLLLCFVFDQAVFTPLIVARAQRQKRVTPPSP*
Ga0164302_101237402	3300012961	Soil	MRLYTLFWTLLVPAGVVLVLAGAVVPGLVLLVLFVFDQAVFTPLIVSRSQKQSRAKRRSE
Ga0134110_100329951	3300012975	Grasslands Soil	MRWLNELPLGFRLYFWIWTLFVPAGVVLLLAGAVVPGLVLLVLFVLDQAVFVPLMVARSQRQKRAGSDDRR*
Ga0164309_104372051	3300012984	Soil	MWRRINELPLGMRLYTLFWTLLVPAGVVLVLAGAVVPGLVLLVLFVFDQAVFTPLIVARSQKQKRAKWRSE*
Ga0164304_112319881	3300012986	Soil	MWRRINELPLGMRLYTLFWTLLVPAGVVLVLAGAVVPGLVLLVLFVFDQALFTPLIVARIQKQNRAKRRSE*
Ga0164307_103557291	3300012987	Soil	LGMKLYFWFWTVLVPAGVALLIAGVVMPGLVLLLCFVFDQAVFTPLIVARAQRQKRVTPPSP*
Ga0164305_105022001	3300012989	Soil	MWRWLNALPLGMKLYFWFWTVLVPAGVALLLAGVVMPGLVLLLCFVFDQAVFTPLIVARAQRQNRANR*
Ga0134078_102887522	3300014157	Grasslands Soil	MRWLNELPLGFRLYFWIWTLFVPAGVALLLAGAVVPGLVLLVLFVLDQAIFVPLIVARGQRQKRGGREGRR*
Ga0173483_102149031	3300015077	Soil	MKLYFWMWTVLVPTGLALLFVGAVLPGLVLLICFVFDQAVFTPLIVARAQRQNRATR*
Ga0134069_11622481	3300017654	Grasslands Soil	MRWLNELPLGFRLYFWIWTLFVPAGVALVLAGAVVPGLVLLVLFVLDQAIFVPLMVARSQRQKRAGSDDRR
Ga0184610_12951021	3300017997	Groundwater Sediment	MWRRINELPLGMRLYTLFWTLFVPAGVILVLSGAVVPGLVLLLLFVVDQAVFTPLIVARIQKQARAKRPGSN
Ga0184605_102250193	3300018027	Groundwater Sediment	MVRRWMGQLPLGLRLYFYFWTLLVPAGVVLLFAGLVVPGLVVLGMFVVDQAIITPLIVARSQKQPRS
Ga0184620_102684461	3300018051	Groundwater Sediment	MWRRINELPLGMRLYTLFWTLFVPAGVILVLAGAVVPGLVLLLLFVVDQAVFTPLIVARIQKQARAKPPDSN
Ga0184619_100254506	3300018061	Groundwater Sediment	MRRIEAARRWERELPLGMRLYFWIWTLLVPVGLALLFAGLVVPGLVLLGLFVIEQAIFVPLIVARSQKQSRP
Ga0184619_100717401	3300018061	Groundwater Sediment	MIRYVRQLRTVRRWMGRLPLGFRLYFWFWTLLVPAGLVLLFAGLVVPGLVLLGMFVIDQAIFTPLIVAWSQKHPRS
Ga0184619_101859543	3300018061	Groundwater Sediment	MVRRWMGQLPLGLRLYFYFWTLLVPAGVVLLFAGLVVPGLVVLGMFVVDQAIFTPLIVARSQKQPRS
Ga0190265_100234324	3300018422	Soil	VRGFLRQLPLGTRLYFYIWTLLVPVGLALLFAGLVVPGLVLLVMFVIEQAIFVPLIVARSQKHPRS
Ga0190270_100017113	3300018469	Soil	MRWLNELPLGFRLYFWFWTLLVPTGVALLLAGAVVPGLVLLVLFVLDQAIFVPLIVARTQRQERADSDQD
Ga0066669_104542512	3300018482	Grasslands Soil	MWRRINELPLGLRLYTLFWTLFLPAGVALVFAGAVVPGLVLLVLLVIDQAFFTPLIVARSQKRRAKR
Ga0173479_104343661	3300019362	Soil	MWRWLNALPLGMKLYFWFWTVLVPAGVALLLAGVVVPGLVLLLCFVFDQAVFTPLIVARAQRQKRVTPPSP
Ga0222622_105216062	3300022756	Groundwater Sediment	MRWLKELPLGFRLYFWLWTLLVPAGVALLLAGLVVPGLVLLALFVLEQAIFVPWIVARKQRQERSGEGGPSAP
Ga0207687_103892472	3300025927	Miscanthus Rhizosphere	MKRLKPLWRELPLGTKLYFGFWTVLVPAGVALVLLGAVVPGLILLVLFLFDQAIFTPLIAARTRRRR
Ga0207687_112707301	3300025927	Miscanthus Rhizosphere	MWRWLNALPLGMKLYFWFWTVLVPAGVALLLAGVVMPGLVLLLCFVFDQAVFTPLIVARAQRQKRVTPPSP
Ga0207686_107989182	3300025934	Miscanthus Rhizosphere	MRMWRWLSSLPLGMKLYFWFWTVLVPAGVALLLAGVVMPGLVLLLCFVFDQAVFTPLIVARAQRQKRVTPPSP
Ga0209470_13564191	3300026324	Soil	MRWLNELPLGFRLYFWIWTLFVPAGAALVLAGAVVPGLVLLVLFVLDQAIFVPLMVARSQRQKRAGSDDRR
Ga0307319_100208302	3300028722	Soil	MWRRINQLPLGLRLYSLFWTLFLPAGVILVLAGAVVPGLVLLVLFVVDQAVFTPLIVARSQKQDRAKRRSG
Ga0307318_100825901	3300028744	Soil	MWRRINQLPLGLRLYSLFWTLFLPAGVILVLAGAVVPGLVLLVLFVFDQAVFTPLIVARSQKQDRAKRRSG
Ga0307320_100199562	3300028771	Soil	MRLYTLFWTLFVPAGVILVLAGAVVPGLVLLLLFVVDQAVFTPLIVARIQKQARAKPPDS
Ga0307320_102492071	3300028771	Soil	MWRQMNELPLGMRLYVLFWTLFLPAGVILVLAGAVVPGLVLLVLFVFDQAVFTPLIVAHSQKKDRAKRRSG
Ga0307282_100363263	3300028784	Soil	MWRRINELPLGLRLYTLFWTLFLPAGVILVFAGAVVPGLVLLVLFVFDQAVFTPLIVARSQKQDREKRRSG
Ga0307323_101570642	3300028787	Soil	MKELPLGYRLYALFWTLFVPAGVILVFAGAVVPGLVLLVLFVFDQAIFTPLIVARSERQERTKRRSG
Ga0307290_100659812	3300028791	Soil	MWRRINQLPLGLRLYSLFWTLFLPAGVILVLAGAVVPGLVLLVLFVFDQAVFTPLIVARSQKRDRAKRRSG
Ga0307299_100900511	3300028793	Soil	MWRRINELPLGLRLYALFWTLFLPAGVILVLAGAVVPGLVLLVLFVFDQAIFTPLIVARSQKQARAKRRSG
Ga0307296_100631614	3300028819	Soil	MGRLPLGFRLYFWFWTLLVPAGLVLLFAGLVVPGLVLLGMFVIDQAIFTPLIVAWSQKHSRS
Ga0307296_101225401	3300028819	Soil	RWLKELPLGFRLYFWLWTLLVPAGVALLLAGLVVPGLVLLALFVLEQAIFVPWIVARKQRQERSGEGGPSAP
Ga0307296_103315471	3300028819	Soil	SIGPMWRRINELPLGMRLYTLFWTLLVPAGVVLVIAGAVVPGLVLLVLFVFDQAVFTPLIVARIQKQNRAKRRSE
Ga0307310_105553882	3300028824	Soil	NDMWRWLNALPLGMKLYFWLWTLLVPTGVALLLVGAVVPGLVLLVCFVFDQAVFTPLIVARSQRRKRVTPPSP
Ga0307312_102015952	3300028828	Soil	MRRLALVRRWMGRLPLGFRLYFWFWTLLVPTGLVLLFSGFVVPGLVLLVMFVIDQAIFTPLIVAWSQKHPRS
Ga0307312_105757862	3300028828	Soil	MGRLPLGFRLYFWFWTLLVPAGLVLLFAGLVVPGLVLLGMFVIDQAIFTPLIVAWSQKHPRS
Ga0307278_104973092	3300028878	Soil	MIRHMRRLALVRRWMDRLPLGFRLYFWFWTLLVPAGLVLLFAGFVVPGLVLLGMFVIDQAIFTPLIVAWRQKHPRS
Ga0307277_101466803	3300028881	Soil	MIGVVRRLGIAREWLRGLPLGFQLYFWLWTLLVPVGVALLFAGLVVPGLVLLVMFVFEQAVFVPWMAARSQKHPRS
Ga0307308_100882813	3300028884	Soil	MRLYTFFWTLFVPVGVILVLAGAVVPGLVLLVLFVFDQAVFTPLIVARSQKRDRAKRRSG
Ga0307308_105128861	3300028884	Soil	MGRLPLGFRLYFWFWTLLVPAGLVLLFAGLVVPGLVLLGMFVIDQAIFTPLIVAWSQKHP
Ga0308204_101071092	3300031092	Soil	SLPLGMKLYFWFWTVLVPTGVALLVAGAVVPGLVLLIWFVFDQAIVTPLLVARSQKQNRASR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095119

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences