Metagenome / Metatranscriptome Family F095073

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F095073
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	73 residues
Representative Sequence	MLRKTLVALAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYVAPHGYKGASHEQSRAARHNG
Number of Associated Samples	78
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	85.71 %
% of genes near scaffold ends (potentially truncated)	20.95 %
% of genes from short scaffolds (< 2000 bps)	92.38 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (65.714 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.000 % of family members)
Environment Ontology (ENVO)	Unclassified (29.524 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.810 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 26.47% β-sheet: 0.00% Coil/Unstructured: 73.53%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF13493	DUF4118	15.24
PF13561	adh_short_C2	8.57
PF13460	NAD_binding_10	5.71
PF03466	LysR_substrate	1.90
PF00589	Phage_integrase	0.95
PF05532	CsbD	0.95
PF02656	DUF202	0.95
PF05239	PRC	0.95
PF11345	DUF3147	0.95
PF08281	Sigma70_r4_2	0.95
PF12833	HTH_18	0.95
PF00512	HisKA	0.95
PF02518	HATPase_c	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.95
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
All Organisms	root	All Organisms	34.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
cellular organisms	root	All Organisms → cellular organisms	34.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	31.43 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	20.00 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	2.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.24 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	2.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.43 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.86 %
Ciliophora	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	2.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.81 %
Intramacronucleata	subphylum	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	2.86 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2.86 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.95 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.81 %
Hypericibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter	2.86 %
Spirotrichea	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	2.86 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.95 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.81 %
Hypericibacter terrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter terrae	2.86 %
Hypotrichia	subclass	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Hypotrichia	2.86 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.95 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.81 %
Euplotida	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Hypotrichia → Euplotida	2.86 %
Hypericibacter terrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter terrae	2.86 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.95 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.81 %
Euplotidae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Hypotrichia → Euplotida → Euplotidae	2.86 %
Hypericibacter terrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter terrae	2.86 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.95 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.81 %
Moneuplotes	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Hypotrichia → Euplotida → Euplotidae → Moneuplotes	2.86 %
Hypericibacter terrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter terrae	2.86 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.95 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.71 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.81 %
Moneuplotes crassus	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Hypotrichia → Euplotida → Euplotidae → Moneuplotes → Moneuplotes crassus	2.86 %
Hypericibacter terrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter terrae	2.86 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.95 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.95 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2065487018\|GPINP_F5MS3JC02GIA1V	Not Available	511	Open in IMG/M
3300000789\|JGI1027J11758_11749221	Not Available	619	Open in IMG/M
3300004114\|Ga0062593_100629814	Not Available	1030	Open in IMG/M
3300004156\|Ga0062589_100458251	Not Available	1059	Open in IMG/M
3300004157\|Ga0062590_100226601	Not Available	1381	Open in IMG/M
3300004479\|Ga0062595_101300743	Not Available	654	Open in IMG/M
3300004479\|Ga0062595_101532573	Not Available	617	Open in IMG/M
3300004479\|Ga0062595_102157406	Not Available	544	Open in IMG/M
3300004480\|Ga0062592_102038305	Not Available	568	Open in IMG/M
3300005093\|Ga0062594_101867582	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Hypotrichia → Euplotida → Euplotidae → Moneuplotes → Moneuplotes crassus	636	Open in IMG/M
3300005347\|Ga0070668_100439502	Not Available	1120	Open in IMG/M
3300005366\|Ga0070659_100698687	Not Available	877	Open in IMG/M
3300005440\|Ga0070705_100409331	All Organisms → cellular organisms → Bacteria → Proteobacteria	1006	Open in IMG/M
3300005536\|Ga0070697_101147523	Not Available	692	Open in IMG/M
3300005539\|Ga0068853_101865534	Not Available	583	Open in IMG/M
3300005718\|Ga0068866_11154559	Not Available	557	Open in IMG/M
3300005719\|Ga0068861_102413404	Not Available	529	Open in IMG/M
3300005844\|Ga0068862_101670248	Not Available	645	Open in IMG/M
3300006852\|Ga0075433_10484279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1090	Open in IMG/M
3300006871\|Ga0075434_100706403	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300006904\|Ga0075424_100654490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1122	Open in IMG/M
3300009094\|Ga0111539_11084033	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300009098\|Ga0105245_11859082	Not Available	655	Open in IMG/M
3300009148\|Ga0105243_11266240	Not Available	753	Open in IMG/M
3300009148\|Ga0105243_11350214	Not Available	732	Open in IMG/M
3300009156\|Ga0111538_10646874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1340	Open in IMG/M
3300009156\|Ga0111538_11243626	Not Available	941	Open in IMG/M
3300009156\|Ga0111538_11896992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter terrae	750	Open in IMG/M
3300009162\|Ga0075423_13012833	Not Available	516	Open in IMG/M
3300009553\|Ga0105249_11715264	Not Available	701	Open in IMG/M
3300010154\|Ga0127503_10328061	Not Available	1013	Open in IMG/M
3300010154\|Ga0127503_11089721	Not Available	564	Open in IMG/M
3300010154\|Ga0127503_11113720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1015	Open in IMG/M
3300010373\|Ga0134128_11241744	Not Available	822	Open in IMG/M
3300010375\|Ga0105239_11621448	Not Available	748	Open in IMG/M
3300010403\|Ga0134123_11745515	All Organisms → cellular organisms → Bacteria → Proteobacteria	674	Open in IMG/M
3300011119\|Ga0105246_10025899	All Organisms → cellular organisms → Bacteria	3826	Open in IMG/M
3300012475\|Ga0157317_1004286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter terrae	924	Open in IMG/M
3300012483\|Ga0157337_1035679	Not Available	529	Open in IMG/M
3300012498\|Ga0157345_1025777	Not Available	629	Open in IMG/M
3300012912\|Ga0157306_10343719	Not Available	564	Open in IMG/M
3300012915\|Ga0157302_10508502	Not Available	522	Open in IMG/M
3300012951\|Ga0164300_11043364	Not Available	529	Open in IMG/M
3300012957\|Ga0164303_10051026	All Organisms → cellular organisms → Bacteria → Proteobacteria	1834	Open in IMG/M
3300012957\|Ga0164303_10453849	Not Available	808	Open in IMG/M
3300012958\|Ga0164299_10001443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6743	Open in IMG/M
3300012958\|Ga0164299_10341258	Not Available	938	Open in IMG/M
3300012958\|Ga0164299_10674526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter terrae	719	Open in IMG/M
3300012960\|Ga0164301_10308125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1069	Open in IMG/M
3300012960\|Ga0164301_10858431	Not Available	700	Open in IMG/M
3300012960\|Ga0164301_11601820	Not Available	540	Open in IMG/M
3300012960\|Ga0164301_11887898	Not Available	504	Open in IMG/M
3300012961\|Ga0164302_10236225	Not Available	1151	Open in IMG/M
3300012961\|Ga0164302_10626068	Not Available	784	Open in IMG/M
3300012984\|Ga0164309_10037856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2707	Open in IMG/M
3300012985\|Ga0164308_11903329	Not Available	554	Open in IMG/M
3300012986\|Ga0164304_10437297	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300012986\|Ga0164304_10438610	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300012988\|Ga0164306_10671869	Not Available	820	Open in IMG/M
3300012988\|Ga0164306_11217990	Not Available	632	Open in IMG/M
3300013105\|Ga0157369_10632666	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300013306\|Ga0163162_11904086	Not Available	681	Open in IMG/M
3300013306\|Ga0163162_12428721	Not Available	603	Open in IMG/M
3300014969\|Ga0157376_10560380	Not Available	1132	Open in IMG/M
3300015371\|Ga0132258_13264173	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300015372\|Ga0132256_100107176	All Organisms → cellular organisms → Bacteria → Proteobacteria	2733	Open in IMG/M
3300015373\|Ga0132257_100166652	All Organisms → cellular organisms → Bacteria → Proteobacteria	2591	Open in IMG/M
3300015373\|Ga0132257_100366202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1745	Open in IMG/M
3300015374\|Ga0132255_101891728	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300015374\|Ga0132255_103777596	Not Available	643	Open in IMG/M
3300015374\|Ga0132255_105733394	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Hypotrichia → Euplotida → Euplotidae → Moneuplotes → Moneuplotes crassus	525	Open in IMG/M
3300017792\|Ga0163161_10795393	Not Available	794	Open in IMG/M
3300019361\|Ga0173482_10113825	Not Available	1002	Open in IMG/M
3300025916\|Ga0207663_11056986	Not Available	652	Open in IMG/M
3300025923\|Ga0207681_10791296	Not Available	792	Open in IMG/M
3300025935\|Ga0207709_11404400	Not Available	578	Open in IMG/M
3300025939\|Ga0207665_10364004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1094	Open in IMG/M
3300025960\|Ga0207651_10196703	All Organisms → cellular organisms → Bacteria	1612	Open in IMG/M
3300025961\|Ga0207712_11791822	Not Available	550	Open in IMG/M
3300026118\|Ga0207675_100382422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1384	Open in IMG/M
3300027907\|Ga0207428_10077365	All Organisms → cellular organisms → Bacteria	2604	Open in IMG/M
3300028380\|Ga0268265_10750612	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300028809\|Ga0247824_10714603	Not Available	612	Open in IMG/M
3300028889\|Ga0247827_10746815	Not Available	643	Open in IMG/M
3300031720\|Ga0307469_10102112	Not Available	2018	Open in IMG/M
3300031720\|Ga0307469_10649364	Not Available	950	Open in IMG/M
3300031720\|Ga0307469_10696544	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300031740\|Ga0307468_101020599	Not Available	730	Open in IMG/M
3300031740\|Ga0307468_101197534	Not Available	684	Open in IMG/M
3300031858\|Ga0310892_10034299	Not Available	2388	Open in IMG/M
3300031858\|Ga0310892_10145663	Not Available	1366	Open in IMG/M
3300031913\|Ga0310891_10057973	Not Available	1103	Open in IMG/M
3300031943\|Ga0310885_10301371	Not Available	828	Open in IMG/M
3300032003\|Ga0310897_10027373	Not Available	1892	Open in IMG/M
3300032013\|Ga0310906_10144165	Not Available	1379	Open in IMG/M
3300032075\|Ga0310890_10269174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1209	Open in IMG/M
3300032205\|Ga0307472_100892982	Not Available	822	Open in IMG/M
3300032205\|Ga0307472_100989404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	787	Open in IMG/M
3300032770\|Ga0335085_10823322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1019	Open in IMG/M
3300032828\|Ga0335080_11942938	Not Available	571	Open in IMG/M
3300032892\|Ga0335081_10400062	Not Available	1767	Open in IMG/M
3300033551\|Ga0247830_10743708	Not Available	779	Open in IMG/M
3300033551\|Ga0247830_11385549	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Hypotrichia → Euplotida → Euplotidae → Moneuplotes → Moneuplotes crassus	562	Open in IMG/M
3300033551\|Ga0247830_11551620	Not Available	530	Open in IMG/M
3300034667\|Ga0314792_242137	Not Available	523	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.00%
Host-Associated	Host-Associated	40.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.14%
Plants	Host-Associated → Plants	40.00%
Aquatic	Environmental → Aquatic	2.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.14%
Freshwater	Environmental → Aquatic → Freshwater	2.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.10%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.76%
Loam	Environmental → Terrestrial → Soil → Loam	3.81%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.10%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	12.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.43%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.81%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	12.38%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.62%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.81%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.95%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2065487018	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012475	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.old.080610	Host-Associated	Open in IMG/M
3300012483	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.yng.040610	Host-Associated	Open in IMG/M
3300012498	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410	Host-Associated	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034667	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPINP_02686870	2065487018	Soil	MLKTLVGLAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASH
JGI1027J11758_117492211	3300000789	Soil	MLRKTLVALAATTSLALGAAVLTPAMANYAPCDENPAATGCPGDYDVTKESFYVAPHIYKAASHE
Ga0062593_1006298142	3300004114	Soil	MLRKTLVALAATTSLALGAAVLTPAMANYAPCDENPAATGCPRNYDVTKESFYVAPHIYKVASHEQSRAARYHG*
Ga0062589_1004582511	3300004156	Soil	MLRKTLVALAATTSLALGAAVLTPAMANYAPCDENPAATGCPRNYDVTKESFYVAPHIYKAASHEQSRAARYHG*
Ga0062590_1002266012	3300004157	Soil	MLRKTLVALAATTSLALGAAVLTPAMANYAPCDENPAATGCPRNYDVTKESFYVAPHIYKAASHEQSRAARHHG*
Ga0062595_1013007431	3300004479	Soil	MLRQVLVAFTAIALLTVGSAALTPAMANYAFCDENPAAKGCPGNYDVTNEAFHVASHSHKQAPFGRHARR*
Ga0062595_1015325731	3300004479	Soil	ASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEQSRAARHHG*
Ga0062595_1021574061	3300004479	Soil	MLRQALVAFIATGSLAVGAAALTPAMANYDRCYENPATGCPGNYDVTKKPFHVASHSHKEAPFGQSR*
Ga0062592_1020383051	3300004480	Soil	MLRKTLVALAATTSLALGAAVLTPAMANYAPCDENPAATGCPGDYDVTKESFYVAPHIYKAASHEQSRAARHHG*
Ga0062594_1018675822	3300005093	Soil	MLRKTLVALAATGSLAVSAAALTPAMANYDRCYENPAATGCPGNYDVTKEAFYVALHKGASHEQSRAARHNG*
Ga0070668_1004395022	3300005347	Switchgrass Rhizosphere	MLKTLVGLAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHERAARHHG*
Ga0070659_1006986871	3300005366	Corn Rhizosphere	MLRKTLVALAAAASLAVGASALTPAMANYDRCYENPAATGCPGNYDVTKEAFYVAPHKGASHEQSRAARHNG*
Ga0070705_1004093311	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MLRKSLVALVATASLAVGAAALTPAMANYDYCYENPAAVGCPGNYDVTKEAFYVPSHSYKTASHEQSHAARHNG*
Ga0070697_1011475231	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MLRKTLVALAATVSLTAGVATLTPAMANYDRCYENPAATGCPGDYNPKEPFVAPQSYKRPSHEHLLHEQTAAFSFGESR*
Ga0068853_1018655342	3300005539	Corn Rhizosphere	MLRKTLVALAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEAFYVAPHKGASHEQSRAARHNG*
Ga0068866_111545591	3300005718	Miscanthus Rhizosphere	GLAAIASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEQSRAARHHG*
Ga0068861_1024134041	3300005719	Switchgrass Rhizosphere	MLKTLVGLAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHESAARHHG*
Ga0068862_1016702482	3300005844	Switchgrass Rhizosphere	MLRKSLVALVATASLAVGAAALTPAMANYDYCYENPAAVGCPGNYDVTKEAFYVPPHSYKTASHEQSHAARHNG*
Ga0075433_104842792	3300006852	Populus Rhizosphere	MLRQALVAFIATGSLAVGAAALTPAMANYDRCYESPAATGCPGNYDVTKKPFHVASHSHKEAPFGQSR*
Ga0075434_1007064031	3300006871	Populus Rhizosphere	MLRKTLVALAATGSLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEQSRAARHHG*
Ga0075424_1006544902	3300006904	Populus Rhizosphere	MLRKTLVALAATGSLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEPSSAARHRG*
Ga0111539_110840331	3300009094	Populus Rhizosphere	DMLRKTLVALAATGSLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYVAAHGYKGASHEQSRAARHNG*
Ga0105245_118590821	3300009098	Miscanthus Rhizosphere	MLRQVLVAFTAIASLTAGAAALTPAMANYAFCDENPAAKGCPGNYDVTNEAFHVASHSHKQAPFGRHARR*
Ga0105243_112662402	3300009148	Miscanthus Rhizosphere	MLKTLVGLAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEQSRAARHHG*
Ga0105243_113502142	3300009148	Miscanthus Rhizosphere	MLRKSLVALVATASLAVGAAALTPAMANYDYCYENPAAVGCPGNYDVTKEASYVPPHSYKSASHEQSHAARHNG*
Ga0111538_106468741	3300009156	Populus Rhizosphere	MLRQVLVAFTAIASLTVGAAALTPAMANYAFCDENPAAKGCLGNYDVTNEAFHVASHSHKQAPFGRHARR*
Ga0111538_112436262	3300009156	Populus Rhizosphere	MLKTLVGLAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEPSPAARHRG*
Ga0111538_118969921	3300009156	Populus Rhizosphere	MLRKTLVALAATGSLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYVAAHGYKGASHEQSRAARHNG*
Ga0075423_130128331	3300009162	Populus Rhizosphere	MLRKTLVALVATASLAVGAAALTPAMANYDYCYENPAAVGCPGNYDVTKEAFYVPPHSYKTASHEQSHAARHNG*
Ga0105249_117152642	3300009553	Switchgrass Rhizosphere	MLKTLVGLAATASLAVGAAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHERAARHHG*
Ga0127503_103280612	3300010154	Soil	MLRTTLVALAATASLAVSAAAFTPAMANYDFCYENPSAVGCPGNYDVTKEAFYVAPHGYRGASHEQSRALGHHG*
Ga0127503_110897212	3300010154	Soil	LRRTDMLKTLVGLAAIASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEPSPAARHRG*
Ga0127503_111137201	3300010154	Soil	MLRKTLVALAATVSLTAGAATLTPAMANYDRCYENPAATGCPGNYDVTKESFYVAPHSYKGASHEQGTAVRHHG*
Ga0134128_112417442	3300010373	Terrestrial Soil	MLRKSLVALVATASLAVGAAALTPAMANYDYCYENPAAVGCPGNYDVTKEASYVPPHSYKTASHEQSHAARHNG*
Ga0105239_116214481	3300010375	Corn Rhizosphere	TEMLRKTLVALAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEAFYVAPHKGASHEQSRAARHNG*
Ga0134123_117455152	3300010403	Terrestrial Soil	MLRKSLVALVATASLAVGAAALTPAMANYDYCYENPAAVGCPGNYDVTKEAFYVPPHSYKTASHEQSHAAR
Ga0105246_100258995	3300011119	Miscanthus Rhizosphere	MLRKTLVALAATGSLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEQFYVAPHSLKGASYEQSPAARHGGYPSA
Ga0157317_10042862	3300012475	Arabidopsis Rhizosphere	MLRKTLVALAATGSLAVGVAALTPAMANYDRCYENPAATGCPGNYDVTKEAFYVAPHKGASHEQSRAARHNG*
Ga0157337_10356791	3300012483	Arabidopsis Rhizosphere	MLRKTLVALVATASLAVGAAALTPAMANYDYCYENPAAVGCPGNYDVTKEAFYVAPHSYKTASHEQSHAARHNG*
Ga0157345_10257772	3300012498	Arabidopsis Rhizosphere	MLRNTLVALAATASLAVGAASLTPAMANSDRCYENPAATGCPGNYDVTKEAFYVCHKGASHEQSSAARHNG*
Ga0157306_103437191	3300012912	Soil	PIKPPFLRRTDMLRKTLVALAATTSLALGAAVLTPAMANYAPCDENPAATGCPGDYDVTKESFYVAPHIYKAASHEQSRAARHHG*
Ga0157302_105085021	3300012915	Soil	KTLVALAATTSLALGAAVLTPAMANYAPCDENPAATGCPGDYDVTKESFYVAPHIYKAASHEQSRAARHHG*
Ga0164300_110433641	3300012951	Soil	MLKTLVRLAAIASLAVGAAALTPAMANYDRCYENPAATSCPGNYDVTKEPFYTAPHGHKAASHEPSHAARHHG*
Ga0164303_100510262	3300012957	Soil	MLRKTLVALAAAASLAVGASALTPAMANYDRCYENPAATGCPGNYDVTKEPFYVAPHGYKGASHEQSHAVRHNG*
Ga0164303_104538492	3300012957	Soil	MLKTLVGLAATSSLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEPSPAARHRG*
Ga0164299_100014434	3300012958	Soil	MLRKTLVALAATVSLTAGVATLTPAMANYDRCYENPAATGCPGNYDVTKESFYVAPHSYKGASHDQGTAVRHHG*
Ga0164299_103412582	3300012958	Soil	MLRKTLVALAATASLAVGASALTPAMANYDRCYENPAATGCPGNYDVTKEAFYVAPHKGASHEQSRAARHNG*
Ga0164299_106745262	3300012958	Soil	MLKTLVGLAAIASLAVGAAALTPAMANYDRCYEHPAATRCPGNYDVTKEPFYTAPHGHKAASH*
Ga0164301_103081252	3300012960	Soil	MLKTLVGLAATASLAVGAAALTPAMANYDRCYENPAATSCPGNYDVTKEPFYTAPHGHKAASHELSPAARHRG*
Ga0164301_108584311	3300012960	Soil	VCDAAPIKPPFLRRTDMLKTLVGLAATSSLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEQSRAARHHG*
Ga0164301_116018202	3300012960	Soil	MLRKTLVALVAAASLAVGAAALTPAMANYDYCYENPAAVGCPGNYDVTKEASYVPPHSYKTASHEQSHAARHNG*
Ga0164301_118878982	3300012960	Soil	MLKKALVALTATASLAMGAAAITPAMANYLHCYENPSATDCPGNYDVTKEAFYVAPLSYKGTSHGRAARHHASDGLAGR*
Ga0164302_102362251	3300012961	Soil	MLKTLVGLAAIASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEQSRAARHHG*
Ga0164302_106260681	3300012961	Soil	MLRKTLVALAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEPSPAARHRG*
Ga0164309_100378564	3300012984	Soil	MLRKTLVALAATVSLTAGVATLTPAMANYDRCYENPAATGCPGNYDVTKESFYVAPHSYKGASHEQGTAVRHHG*
Ga0164308_119033291	3300012985	Soil	MLKTLVGLAATASLAMGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEPSPAARHRG*
Ga0164304_104372971	3300012986	Soil	MLRKTLVALAATVSLTAGAATLTPAMANYDRCYENPAATGCPGNYDVTKESFYVAPHSYKGASHEQGTAVR
Ga0164304_104386102	3300012986	Soil	MLRKTLVALAATVSRTAGAATLTPAMANYDSCYENPAATGCPGNYDVTKEAFYVAASHGRAARRYASDGLAGR*
Ga0164306_106718691	3300012988	Soil	MLKTLVGLAAIASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEPSHAARHHG*
Ga0164306_112179902	3300012988	Soil	VRGSLVALVATPSLAVGAAALTPAMANYDYCYENPAAVGCPGNYDVTKEASYVPPHSYKTASHEQSHAARHNG*
Ga0157369_106326661	3300013105	Corn Rhizosphere	MLRKTLVALAATGSLAVGVAALTPAMANYDRCYENPAATGCPGDYNPKEPFVAPQSYKRPSHEHLLHEQTAAFS
Ga0163162_119040861	3300013306	Switchgrass Rhizosphere	KSLVALVATASLAVGAAALTPAMANYDYCYENPAAVGCPGNYDVTKEASYVPPHSYKTASHEQSHAARHHG*
Ga0163162_124287211	3300013306	Switchgrass Rhizosphere	MLRQVLVAFAAIASLTVGAAALTPAMANYAFCDENPAAKGCLGNYDVTNEAFHVASHSHKQAPFGRHARR*
Ga0157376_105603802	3300014969	Miscanthus Rhizosphere	MLRKTLVALAATTSLALSAGALTPAMANYAPCDENPAATGCPGNYDVTKEAFYVAPHNDKAASHEKIGAARHHG*
Ga0132258_132641732	3300015371	Arabidopsis Rhizosphere	MLRKTLVALVATASLAVGAAALTPAMANYDYCYENPAAVGCPGNYDVTKEAFYVPPHSYKTASHEQSHAARHSG*
Ga0132256_1001071761	3300015372	Arabidopsis Rhizosphere	MLRKTLVALVATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYVAPHGYKGASHEQSHAVRHNG*
Ga0132257_1001666523	3300015373	Arabidopsis Rhizosphere	MLRKTLVALVATASLAVAAAALTPAMANYDYCYENPAAVGCPGNYDVTKEAFYVAPHSYKTASHEQSHAARHNG*
Ga0132257_1003662022	3300015373	Arabidopsis Rhizosphere	MLKTLVGLAAAASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHNPKAASHEQSRAARHNG*
Ga0132255_1018917281	3300015374	Arabidopsis Rhizosphere	FLRRTDMLRKTLVALVATASPAVGAAALTPAMANYDYCYETPAAVGCPGNYDVTKEAFYVAPHSYKTASHEQSHAARHNG*
Ga0132255_1037775962	3300015374	Arabidopsis Rhizosphere	LAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEAFYVAPHKGASHEQSRAARHNG*
Ga0132255_1057333941	3300015374	Arabidopsis Rhizosphere	LAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYVAPHGYKGASHEQSHAVRHNG*
Ga0163161_107953932	3300017792	Switchgrass Rhizosphere	MLKTLVGLAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEQSRAARHHG
Ga0173482_101138251	3300019361	Soil	MLRKTLVALAATTSLALGAAVLTPAMANYAPCDENPAATGCPRNYDVTKESFYVAPHIYKAASHEQSRAARHHG
Ga0207663_110569861	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MLRKTLVALAAAASLTAGAATLTPATANYAPCDENPAATGCPGNYDVTKESFYVAPHNSKAASHEQRPAARHHG
Ga0207681_107912962	3300025923	Switchgrass Rhizosphere	MLRKSLVALVATASLAVGAAALTPAMANYDYCYENPAAVGCPGNYDVTKEASYVPPHSYKTASHEQSHAARHNG
Ga0207709_114044001	3300025935	Miscanthus Rhizosphere	MLKTLVGLAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEAFYVPPHSYKTASHEQSHAARHNG
Ga0207665_103640043	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MLRKTLVALAATGSLAVGVAALTPAMANYDRCDENPAATGCPGNYDVTKESFYVAPHNSKAASHEQRPAARHHG
Ga0207651_101967032	3300025960	Switchgrass Rhizosphere	MLRKTLVALAATGSLAVGVAALTPAMANYDRCDENPAAKGCLGNYDVTNEAFHVASHSHKQAPFGRHARR
Ga0207712_117918222	3300025961	Switchgrass Rhizosphere	MLKTLVGLAATASLAVGAAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEQSR
Ga0207675_1003824222	3300026118	Switchgrass Rhizosphere	MLRKTLVALAATGSLAVGAAVLTPAMANYDFCYENPAATGCPGNYNVTKEPFYVAPHGHKGASHEQSRAARHNG
Ga0207428_100773653	3300027907	Populus Rhizosphere	MLKTLVGLAATASLAVGAAALTPAMANYDRCYENPATGCPGNYDVTKKPFHVASHSHKEAPFGQSR
Ga0268265_107506121	3300028380	Switchgrass Rhizosphere	MLRKSLVALVATASLAVGAAALTPAMANYDYCYENPAAVGCPGNYDVTKEAFYVPPHSYKTASHEQSHAARHNG
Ga0247824_107146031	3300028809	Soil	MLRKTLVALAATGSLTVGAAALTPAMANYDFCYENPAATGCPGNYDVTKEAFYVAPHGYKGASHEQSRALGNHG
Ga0247827_107468151	3300028889	Soil	MLKTLVGLAATASLAVGAAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPYGHKAASHEPSPAARHRG
Ga0307469_101021121	3300031720	Hardwood Forest Soil	MLKTLVGLAATASLAVGAAAALTPAMANYDRCYENPAATACPGNYDVTKEPFYTAPHGHKAASHEPSPAARHRG
Ga0307469_106493642	3300031720	Hardwood Forest Soil	MLRTTLVALAATASLAVSAAAFTPAMANYDFCYENPSAVGCPGNYDVTKEAFYVAPHSYRGASHEQSRALGHHG
Ga0307469_106965441	3300031720	Hardwood Forest Soil	MLRKTLVALVATASLAVSAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYVAPHGYKGASHEQSRAARHNG
Ga0307468_1010205991	3300031740	Hardwood Forest Soil	MLRKTLVALAATGSLAVGAAALTPAMANYDFCYENPAATGCPGNYDVTKEPFYVAPHGHKGASHEQSRAARHNG
Ga0307468_1011975341	3300031740	Hardwood Forest Soil	MLKTLVGLAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEPSPAARHRG
Ga0310892_100342992	3300031858	Soil	MLRKTLVALAAAASLAVGASALTPAMANYDRCYENPAATGCPGNYDVTKEPFYVAPHGYKGASMSRATRCVTTASGVSRLVRR
Ga0310892_101456631	3300031858	Soil	MLRKTLVALAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEAFYVAPHKGASHEQSRAARHNG
Ga0310891_100579731	3300031913	Soil	MLKTLVGLAAAASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYVAPHGYKGASHEQSHAVRHNG
Ga0310885_103013711	3300031943	Soil	AFVATASLVVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYVAPHGYKGASHEQSHAVRHNG
Ga0310897_100273732	3300032003	Soil	MLRKTLVALAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYVAPHGYKGASHEQSRAARHNG
Ga0310906_101441652	3300032013	Soil	MLRKTLVALAATGSLAVSAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYVAPHGYKGASHEQSHAVRHNG
Ga0310890_102691741	3300032075	Soil	MLRKTLVALAATGSLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYTAPHGHKAASHEQSRAARHHG
Ga0307472_1008929821	3300032205	Hardwood Forest Soil	MLRKTLVALVAPASLVVGAAVLTPAMANYDRCYENPAATGCPGNYDVTKEPFYVAPHGYKGASHEQSHAVRHNG
Ga0307472_1009894041	3300032205	Hardwood Forest Soil	MLRKTLVALAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYVAPHGYKGAA
Ga0335085_108233221	3300032770	Soil	MLRKTLVALAATASLAVGAAARTPAMANYDHCYENPAATDCPGNTDVTKESFYVAPHGYKGASNQQSSAARHRG
Ga0335080_119429381	3300032828	Soil	MLRNTLIALTAGASLAMGAAALTPAMANYPACAENPAVSGCPGNYDVTKESFYVAPHGYTGASHKPSHTARR
Ga0335081_104000621	3300032892	Soil	MLRKALLALVATASLAMGAAALTPAMANYPHCTENPAATDCPGNTDVTKESFYVAPHSYKGASHQQSRAASPSGLATATLLARH
Ga0247830_107437081	3300033551	Soil	MLKTLVGLAATASLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEAFYVAPHKGASHEQSRAARHNG
Ga0247830_113855491	3300033551	Soil	IDMLRKTLVTLAATGSLAVGAAALTPAMANYDRCYENPAATGCPGNYDVTKEPFYVAPHGYKGASPRGASQRLVTVT
Ga0247830_115516201	3300033551	Soil	MLRKTLVALAATGSLAVGAAALTPAMANYDFCYENPAATGCPGNYDVTKEAFYVAPHGYKGAPHEQSRAARHNG
Ga0314792_242137_68_292	3300034667	Soil	MLRKTLVALAAAASLAVGASALTPAMANYDRCYENPAATGCPGNYDVTKEPFYVAPHGYKGASHEQSHAVRHNG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095073

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences