Metagenome / Metatranscriptome Family F095066

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F095066
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	63 residues
Representative Sequence	MDAYFVTMDILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSVAEL
Number of Associated Samples	96
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.81 %
% of genes near scaffold ends (potentially truncated)	29.52 %
% of genes from short scaffolds (< 2000 bps)	80.95 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (80.952 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (17.143 % of family members)
Environment Ontology (ENVO)	Unclassified (23.810 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.333 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.54% β-sheet: 0.00% Coil/Unstructured: 38.46%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF14559	TPR_19	11.43
PF13432	TPR_16	2.86
PF01872	RibD_C	1.90
PF00072	Response_reg	0.95
PF13414	TPR_11	0.95
PF00109	ketoacyl-synt	0.95
PF01494	FAD_binding_3	0.95
PF13429	TPR_15	0.95
PF14464	Prok-JAB	0.95
PF08447	PAS_3	0.95
PF06283	ThuA	0.95
PF14329	DUF4386	0.95
PF01016	Ribosomal_L27	0.95
PF12704	MacB_PCD	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.90
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.90
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.90
COG0211	Ribosomal protein L27	Translation, ribosomal structure and biogenesis [J]	0.95
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.95
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.95
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.95
COG4813	Trehalose utilization protein	Carbohydrate transport and metabolism [G]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.95 %
Unclassified	root	N/A	19.05 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.95 %
Unclassified	root	N/A	19.05 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.95 %
Unclassified	root	N/A	19.05 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	74.29 %
Unclassified	root	N/A	19.05 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	60.00 %
Unclassified	root	N/A	19.05 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	56.19 %
Unclassified	root	N/A	19.05 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	55.24 %
Unclassified	root	N/A	19.05 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	55.24 %
Unclassified	root	N/A	19.05 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.86 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	55.24 %
Unclassified	root	N/A	19.05 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.86 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17086509	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1398	Open in IMG/M
2140918008\|ConsensusfromContig51412	Not Available	1449	Open in IMG/M
3300000953\|JGI11615J12901_11032320	Not Available	898	Open in IMG/M
3300005534\|Ga0070735_10000423	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	47105	Open in IMG/M
3300005713\|Ga0066905_101164462	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	687	Open in IMG/M
3300006854\|Ga0075425_100002852	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	17394	Open in IMG/M
3300009029\|Ga0066793_10020040	All Organisms → cellular organisms → Bacteria	3630	Open in IMG/M
3300009092\|Ga0105250_10161516	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	936	Open in IMG/M
3300009093\|Ga0105240_11568757	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	689	Open in IMG/M
3300009098\|Ga0105245_10040795	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	4136	Open in IMG/M
3300009137\|Ga0066709_102525231	Not Available	692	Open in IMG/M
3300009148\|Ga0105243_10081423	Not Available	2643	Open in IMG/M
3300010043\|Ga0126380_10126722	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1589	Open in IMG/M
3300010046\|Ga0126384_10539118	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1012	Open in IMG/M
3300010046\|Ga0126384_10976048	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	770	Open in IMG/M
3300010047\|Ga0126382_10565001	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	929	Open in IMG/M
3300010048\|Ga0126373_10011393	All Organisms → cellular organisms → Bacteria → Proteobacteria	7212	Open in IMG/M
3300010048\|Ga0126373_10714836	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1061	Open in IMG/M
3300010154\|Ga0127503_10742560	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	632	Open in IMG/M
3300010301\|Ga0134070_10014356	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	2529	Open in IMG/M
3300010304\|Ga0134088_10018823	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3039	Open in IMG/M
3300010321\|Ga0134067_10159876	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	808	Open in IMG/M
3300010322\|Ga0134084_10138704	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	809	Open in IMG/M
3300010326\|Ga0134065_10174318	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	765	Open in IMG/M
3300010341\|Ga0074045_10042042	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3356	Open in IMG/M
3300010343\|Ga0074044_10045323	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	3039	Open in IMG/M
3300010358\|Ga0126370_10666091	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	909	Open in IMG/M
3300010358\|Ga0126370_12603721	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	506	Open in IMG/M
3300010359\|Ga0126376_11682238	Not Available	669	Open in IMG/M
3300010360\|Ga0126372_11647469	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	681	Open in IMG/M
3300010361\|Ga0126378_10186541	All Organisms → cellular organisms → Bacteria	2143	Open in IMG/M
3300010361\|Ga0126378_10910759	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	986	Open in IMG/M
3300010366\|Ga0126379_10047744	All Organisms → cellular organisms → Bacteria	3503	Open in IMG/M
3300010366\|Ga0126379_12081182	All Organisms → cellular organisms → Bacteria → Acidobacteria	670	Open in IMG/M
3300010376\|Ga0126381_100401473	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1909	Open in IMG/M
3300010379\|Ga0136449_100635730	Not Available	1808	Open in IMG/M
3300010396\|Ga0134126_12896835	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	519	Open in IMG/M
3300010398\|Ga0126383_13241902	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	531	Open in IMG/M
3300010868\|Ga0124844_1243080	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	636	Open in IMG/M
3300010868\|Ga0124844_1295995	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	549	Open in IMG/M
3300012200\|Ga0137382_10312935	All Organisms → cellular organisms → Bacteria → Acidobacteria	1097	Open in IMG/M
3300012200\|Ga0137382_11072451	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300012349\|Ga0137387_10031475	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3428	Open in IMG/M
3300012362\|Ga0137361_11788253	Not Available	533	Open in IMG/M
3300012478\|Ga0157328_1006538	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	712	Open in IMG/M
3300012485\|Ga0157325_1014190	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	636	Open in IMG/M
3300012492\|Ga0157335_1011138	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	733	Open in IMG/M
3300012499\|Ga0157350_1002884	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1087	Open in IMG/M
3300012500\|Ga0157314_1014756	All Organisms → cellular organisms → Bacteria → Acidobacteria	731	Open in IMG/M
3300012507\|Ga0157342_1020290	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	767	Open in IMG/M
3300012508\|Ga0157315_1016148	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	736	Open in IMG/M
3300012512\|Ga0157327_1034693	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	648	Open in IMG/M
3300012517\|Ga0157354_1009521	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	948	Open in IMG/M
3300012532\|Ga0137373_10712698	All Organisms → cellular organisms → Bacteria → Acidobacteria	747	Open in IMG/M
3300012930\|Ga0137407_12418705	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	502	Open in IMG/M
3300012948\|Ga0126375_10191155	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1334	Open in IMG/M
3300012957\|Ga0164303_10107363	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1397	Open in IMG/M
3300012957\|Ga0164303_10842520	Not Available	636	Open in IMG/M
3300012958\|Ga0164299_10053397	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1902	Open in IMG/M
3300012961\|Ga0164302_10339847	All Organisms → cellular organisms → Bacteria → Acidobacteria	999	Open in IMG/M
3300012971\|Ga0126369_12932719	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	558	Open in IMG/M
3300012984\|Ga0164309_10878189	All Organisms → cellular organisms → Bacteria → Acidobacteria	729	Open in IMG/M
3300012985\|Ga0164308_10675774	Not Available	887	Open in IMG/M
3300012987\|Ga0164307_10154645	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1514	Open in IMG/M
3300012988\|Ga0164306_10795665	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	761	Open in IMG/M
3300012989\|Ga0164305_10916619	All Organisms → cellular organisms → Bacteria → Acidobacteria	738	Open in IMG/M
3300013307\|Ga0157372_11165156	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	891	Open in IMG/M
3300013503\|Ga0120127_10017606	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1245	Open in IMG/M
3300013770\|Ga0120123_1157401	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	541	Open in IMG/M
3300014164\|Ga0181532_10047109	All Organisms → cellular organisms → Bacteria	2865	Open in IMG/M
3300014165\|Ga0181523_10273292	Not Available	960	Open in IMG/M
3300014166\|Ga0134079_10057880	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1383	Open in IMG/M
3300014169\|Ga0181531_10182828	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1271	Open in IMG/M
3300014326\|Ga0157380_11792448	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	673	Open in IMG/M
3300014497\|Ga0182008_10867548	Not Available	529	Open in IMG/M
3300014968\|Ga0157379_11722622	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	614	Open in IMG/M
3300014969\|Ga0157376_10487785	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1209	Open in IMG/M
3300015053\|Ga0137405_1390903	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	2439	Open in IMG/M
3300015075\|Ga0167636_1006222	All Organisms → cellular organisms → Bacteria	1918	Open in IMG/M
3300015261\|Ga0182006_1322724	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	507	Open in IMG/M
3300015262\|Ga0182007_10049468	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1389	Open in IMG/M
3300015262\|Ga0182007_10426259	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	508	Open in IMG/M
3300015357\|Ga0134072_10032556	Not Available	1370	Open in IMG/M
3300015359\|Ga0134085_10030611	Not Available	2093	Open in IMG/M
3300015371\|Ga0132258_10173958	All Organisms → cellular organisms → Bacteria	5194	Open in IMG/M
3300015373\|Ga0132257_100046541	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	4816	Open in IMG/M
3300017926\|Ga0187807_1184080	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300018085\|Ga0187772_10598391	Not Available	784	Open in IMG/M
3300019868\|Ga0193720_1025404	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	843	Open in IMG/M
3300019872\|Ga0193754_1001208	Not Available	2155	Open in IMG/M
3300025474\|Ga0208479_1069319	Not Available	673	Open in IMG/M
3300025906\|Ga0207699_10997267	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	619	Open in IMG/M
3300025928\|Ga0207700_11068241	All Organisms → cellular organisms → Bacteria → Acidobacteria	722	Open in IMG/M
3300027986\|Ga0209168_10000302	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	53704	Open in IMG/M
3300029989\|Ga0311365_11105868	Not Available	683	Open in IMG/M
3300031094\|Ga0308199_1130105	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	582	Open in IMG/M
3300031421\|Ga0308194_10336149	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300031543\|Ga0318516_10438063	Not Available	752	Open in IMG/M
3300031768\|Ga0318509_10785245	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300031780\|Ga0318508_1083342	Not Available	877	Open in IMG/M
3300031833\|Ga0310917_11184374	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	508	Open in IMG/M
3300032174\|Ga0307470_10664222	All Organisms → cellular organisms → Bacteria → Acidobacteria	789	Open in IMG/M
3300032261\|Ga0306920_101190221	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1101	Open in IMG/M
3300032955\|Ga0335076_11020981	Not Available	710	Open in IMG/M
3300033412\|Ga0310810_11237566	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	599	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.05%
Host-Associated	Host-Associated	20.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.29%
Plants	Host-Associated → Plants	20.95%
Aquatic	Environmental → Aquatic	4.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.57%
Freshwater	Environmental → Aquatic → Freshwater	4.76%
Peat	Environmental → Terrestrial → Peat	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.38%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.76%
Loam	Environmental → Terrestrial → Soil → Loam	4.76%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.90%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	51.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.71%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.90%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.95%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.95%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.33%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	6.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.90%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	1.90%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.90%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.90%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.95%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.95%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.95%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.95%
Glacier Forefield Soils	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soils	0.95%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.95%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.95%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.95%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012478	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.9.old.080610	Host-Associated	Open in IMG/M
3300012485	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.7.old.040610	Host-Associated	Open in IMG/M
3300012492	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610	Host-Associated	Open in IMG/M
3300012499	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.yng.030610	Environmental	Open in IMG/M
3300012500	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610	Host-Associated	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012512	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510	Host-Associated	Open in IMG/M
3300012517	Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015075	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G5C, Northern proglacial tributary margin, adjacent to top of river)	Environmental	Open in IMG/M
3300015261	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG	Host-Associated	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019868	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s1	Environmental	Open in IMG/M
3300019872	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a1	Environmental	Open in IMG/M
3300025474	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300029989	III_Fen_N1 coassembly	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01195480	2088090014	Soil	MDAYFVTMDILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSGAEL
Bog_all_C_02429320	2140918008	Soil	MDAYFVTMHILKCPPEAMFRALPLLGTFLKGLIVNDVMVRAANIFEQPRRALSFRTSVAE
JGI11615J12901_110323201	3300000953	Soil	MDACFVTMHILKCPSEPMFPTLIRSLLGTFLKGLIVNDAMVRAANIFEQPRQALSFRKSGAEL*
Ga0070735_1000042321	3300005534	Surface Soil	MDAYFVTMHILKCLPETMFRAPTRSLLETFLKGLIVNDVMVRAANIFKQPTKALSFRTSLAQL*
Ga0066905_1011644622	3300005713	Tropical Forest Soil	RMDAYFVTMDILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVLAANIFEQPRQALSFRTSVAEL*
Ga0075425_1000028522	3300006854	Populus Rhizosphere	MDAYFVTMDILKCPPEAMLRGLIRSLLGTFLKGLIVNDVMVRAANIFEQPRLGLSFRTSVAEL*
Ga0066793_100200402	3300009029	Prmafrost Soil	MDAYFVTMHTLKCPPEAMFRALPLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSVAEL*
Ga0105250_101615161	3300009092	Switchgrass Rhizosphere	MDAYFVTMDILKCPPEAMFRAPIRSLLRTFLKELIVSDVMVREANTFEQPRQALSFRTSGAELSILHG*
Ga0105240_115687571	3300009093	Corn Rhizosphere	MDAYFVTMHILKCPPEAMFRAPIRSLLRTFLKELIVSDVMVREANTFEQPRQALSFRTSGAELSILHG*
Ga0105245_100407951	3300009098	Miscanthus Rhizosphere	MDAYFVTMDILKCLPEAMFRAPIRSLLRTFLKELIVSDVMVREANTFEQPRQALSFRTSGAELSILHG*
Ga0066709_1025252311	3300009137	Grasslands Soil	MDAYFVTMHILKCPPESMFRALPLLGTFLKGLIVNDVMVRAANIFEQPRQALSLRTSVAEL*
Ga0105243_100814233	3300009148	Miscanthus Rhizosphere	MVAYFVTMDILKCPPKAMFRAPIRSLLRTFLKELIVSDVMVREANTFEQPRQALSFRTSGAELSILHG*
Ga0126380_101267222	3300010043	Tropical Forest Soil	MDAYFVTMDILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVLAANIFEQPRQALSFRTSVAEL*
Ga0126384_105391182	3300010046	Tropical Forest Soil	MRAYFVTTHILKCPPEAMFQTLIRYLPGTFRKGLVVNDVMVRVANIFELPKQALRFRTSAAKL*
Ga0126384_109760481	3300010046	Tropical Forest Soil	MDAYFVTMHILEWPPEAMFRTLIRSLLGTFLKGLIVNDVMVRAANIFEQLKQALSFRTLAAEL*
Ga0126382_105650011	3300010047	Tropical Forest Soil	MDACFVTMDILKCPPEAMPRALFRALIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSVAEL*
Ga0126373_100113932	3300010048	Tropical Forest Soil	MNAYSVTMHILKCPPEPIFLIPTRFSLGTFLKESIVNVVMVLAADIFEQLRLYLLNFRTLVAAL*
Ga0126373_107148361	3300010048	Tropical Forest Soil	MDAYFVTMDILKCPPEAMFRALIQSLLGTFLKGLIVNDVMVLAANIFEQPRQALSFRTSVAEL*
Ga0127503_107425601	3300010154	Soil	MDAYFVTMDILKCPPEAMFRTLIRSLLGTFPKGLIVNDVMVRAANIFEQPRQALSFRTSVAEL*
Ga0134070_100143562	3300010301	Grasslands Soil	MDAYFVTMHILKCPPEAMFRALPLLGTFLKGLIVNDVMVRAANIFEQPRQALSLRTSVAEL*
Ga0134088_100188233	3300010304	Grasslands Soil	DAYFVTMHILKCPPEAMFRALPLLGTFLKGLIVNDVMVRAANIFEQPRQALSLRTSVAEL
Ga0134067_101598761	3300010321	Grasslands Soil	MHILKCPPEAMFRALPLLGTFLKGLIVNDVMVRAANIFEQPRQALSLRTSVAEL*
Ga0134084_101387041	3300010322	Grasslands Soil	MDAYFVTMDIPKCPPEAMFRALIRSLLATFLKGLIVNDVMVRAANIFEQPRQALSLRTSVAEL*
Ga0134065_101743181	3300010326	Grasslands Soil	MDAYFVTMHILKCPPEAMFRALPLLGTFLKGLIVNDVMVRAANIFEQLRQALSFRTSVAE
Ga0074045_100420425	3300010341	Bog Forest Soil	MDAYFVTMDILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSVAVL*
Ga0074044_100453232	3300010343	Bog Forest Soil	MDAYFVTMDILKCPPEAMFRAPIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSAAEL*
Ga0126370_106660912	3300010358	Tropical Forest Soil	MDAYFVMMHILKCPPEAMFRALPLQGIFLKGLIVNDVMVRAANIFEQPKQALSFRTSVEEL*
Ga0126370_126037211	3300010358	Tropical Forest Soil	MDAYFVTMDILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVRAANIFEQLKQALSFRTLAAEL*
Ga0126376_116822381	3300010359	Tropical Forest Soil	MDAYFVTMHILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVLAANIFEQPRQALSFRTSVAEL*
Ga0126372_116474691	3300010360	Tropical Forest Soil	MDILRCPPEAMFRTLIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSAAEL
Ga0126378_101865411	3300010361	Tropical Forest Soil	MDAYFVTMDILKCPPEAMFRMLIRSLLGTFLKGLIVIDVMVRAGNIFEQLKQALSFRKLAAEL*
Ga0126378_109107591	3300010361	Tropical Forest Soil	MDAYFVTMHILKCPPEAMFRALIRSLLGSFLKGLIVNDVMVLAANIFEQPRQALSFRTSVAEL*
Ga0126379_100477441	3300010366	Tropical Forest Soil	MDAYFVTMHILEWPPEAMFRTLIRSLLGTFLKGLIVNDVMVRAANIFEQPRRALIFRTSVAEL*
Ga0126379_120811823	3300010366	Tropical Forest Soil	DAYFVTMDILRCPPEAMFRMLIRSLLGTFLKGLIVNDVMVLAANIFEQPRQVPSFRTSVAEL*
Ga0126381_1004014731	3300010376	Tropical Forest Soil	MDAYFVTMDILKCPPEAMFRALIQSLLGTFLKGLIVNDVMVLAANIFEQPRQVPSFRTSVAEL*
Ga0136449_1006357301	3300010379	Peatlands Soil	MDAYFVTINILKCPPEAMFRTLIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSVAVL*
Ga0134126_128968351	3300010396	Terrestrial Soil	MDILKCPPKAMFRAPIRSLLRTFLKELIVSDVMVREANTFEQPRQALSFRTSGAELSILHG*
Ga0126383_132419021	3300010398	Tropical Forest Soil	DSIPVIRRPGDWFRTDAYFVTMDILRCPPEAMFRTLIRSLLGTFRKGLIVNDVMVRAANIFEQPRRAPIFRTSVAEL*
Ga0124844_12430801	3300010868	Tropical Forest Soil	MDAYFVTMDILKCPPEAMFRTLIRSLLIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRSSVAEL*
Ga0124844_12959951	3300010868	Tropical Forest Soil	MDAYFVTMDILKCPPEAMFRALIQSLLGTFLKGLIVNDVMVLAANIFEQPRQVLSFR
Ga0137382_103129352	3300012200	Vadose Zone Soil	CPPEAMFRALPLLGTFLKGLIVNDVMVRAANIFEQPRQALSLRTSVAEL*
Ga0137382_110724511	3300012200	Vadose Zone Soil	CPPEAMFRALPLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSVAEL*
Ga0137387_100314752	3300012349	Vadose Zone Soil	MDAYFVTMHILKCPPEAMFRALPLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSVAEL*
Ga0137361_117882531	3300012362	Vadose Zone Soil	MDAYFVTMDILKCPPEAMFRTLIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSVAEL*
Ga0157328_10065381	3300012478	Arabidopsis Rhizosphere	MDAYFVTTDILKCPPEAMFRALPSLGSFRKGLIVNDVTVRAVNTFEQPRQGLSFRTSVAEL*
Ga0157325_10141901	3300012485	Arabidopsis Rhizosphere	MDAYFVTMDILKCPPEAMFQAPIRSLLGTFLKELIVSDVMVREANTFEQPRQALSFRTSGAELSILHG*
Ga0157335_10111382	3300012492	Arabidopsis Rhizosphere	MDAYFVTMDILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVRAANIFEQPRLGLSFRTSVAEL*
Ga0157350_10028841	3300012499	Unplanted Soil	MDASFVTMDILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVLAANIFEQPRQALSFRTSVAEL*
Ga0157314_10147561	3300012500	Arabidopsis Rhizosphere	TMDILKCPLEAMFRALIRSLLGTFLKGLIVNDVMVRATNIFEQPRQALSFRTSVAEL*
Ga0157342_10202901	3300012507	Arabidopsis Rhizosphere	MDAYFVTMGILKYPPEAMFRALIRSSLGTCLKGLIVNDVMVLAANIFEQPRQALSFRTSAAEL*
Ga0157315_10161481	3300012508	Arabidopsis Rhizosphere	MVAYFVTMDILKCPPKAMFRAPIRSLLRTFLKELIVSDVMVREANIFEQLRQALSFRTSAAEL*
Ga0157327_10346932	3300012512	Arabidopsis Rhizosphere	MDAYFVTMDILKCPPEAMFRAPIRSLLRTFLKELIVSDVMVREANIFAQLRQALSFRTSAAEL*
Ga0157354_10095211	3300012517	Unplanted Soil	MDAYFVTMDILKCPPEAMFRAQTQSLVRTFLKGLIVNDVMVREANIFAQLRQALSFRTSAAEL*
Ga0137373_107126981	3300012532	Vadose Zone Soil	DAYFVTMDILKCPPEAMFRALIRSLLRTFLKGLIVNDVMVRAANIFEQPRQALSLRTSVAEL*
Ga0137407_124187052	3300012930	Vadose Zone Soil	MDAYFVTMDILKCPPEAMFRTLIRSLLGIFLKGLIVNDVMVRAANIFEQPRQALSLRTSVAEL*
Ga0126375_101911552	3300012948	Tropical Forest Soil	MDAYFVTMHILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSVAEL*
Ga0164303_101073632	3300012957	Soil	MDAYFVTMDILKCPPEAMFRAPIRSLLRTFLKELIVSDVMVREANTFEQPRQALSFRTSGAEL
Ga0164303_108425201	3300012957	Soil	MDAYFVTMDILKCPPEAIFRMLIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALNLRTSVAEL*
Ga0164299_100533972	3300012958	Soil	MDAYFVTMHILKCPPEAMFRAPPLLGTFLRGLIVNDVMVRVANIFEQPRQALNLRTSVAEL*
Ga0164302_103398472	3300012961	Soil	YFVTMDILKCPPEAMFRALIRSLLGTFLKGLMVNDVMVRAANIFEQPRQPLSFRTSVAEL
Ga0126369_129327191	3300012971	Tropical Forest Soil	MDAYSVTMDILRCPPEAMFRALILSLLGTFLKGLIANDVMVRAANIFEQPRQALSFRTSAAEL*
Ga0164309_108781892	3300012984	Soil	FVTMDILKCPPEAMFRALIRSLLGTFLKGLIVNDVMLLAANIFEQPKQALSFRTSVAEL*
Ga0164308_106757742	3300012985	Soil	MHAYFVTMHILKCPPEAMFRALIRSLLRIFLKELTVNDVMVRAANMFEQPRQALSFRTSVAELLILHG*
Ga0164307_101546452	3300012987	Soil	MDAYFVTMDILKCPPKAMFRAPIRSLLRTFLKELIVSDVMVREANTFEQPRQALSFRTSGAELSILHG*
Ga0164306_107956651	3300012988	Soil	MDAYFVTMDILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVLAANIFEQLRLQAPSCRTSVAEL*
Ga0164305_109166192	3300012989	Soil	MHAYFVTMHILKCPPEAMFRAPPLLGTFLRGLIVNDVMVRVANIFEQPRQALNLRTSVAEL*
Ga0157372_111651562	3300013307	Corn Rhizosphere	MHACFVTTHILKCPPAAMFRKHRPEATFQALIRSLLRIFLKELTVNDVMVRAANMFEQPRQALRFRT*
Ga0120127_100176062	3300013503	Permafrost	MDAYFVTMDILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSVAEL*
Ga0120123_11574011	3300013770	Permafrost	MDAYFVTMHILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALRFRTSVTEL*
Ga0181532_100471091	3300014164	Bog	MDAYFVTMDILKCPPEAMFRTLIRSLPGTFLKGLIVNDVMVRAANIFKQPRQALSFRTSVAAL*
Ga0181523_102732921	3300014165	Bog	MDAYFVTMDILKCRPEAKFRTLIQSLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSVAAL*
Ga0134079_100578801	3300014166	Grasslands Soil	MDAYFVMMDILKCPLEAMFRALFRTLIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSVAEL*
Ga0181531_101828282	3300014169	Bog	MDAYFVTMNILKCPPEAMFRTLIRSFLGTFLQGLIVNDVMVRAANIFEQPKRALSFRTSLAEL*
Ga0157380_117924482	3300014326	Switchgrass Rhizosphere	IPFIRRPGDWFRMVAYFVTMDILKCPPKAMFRAPIRSLLRTFLKELIVSDVMVREANTFEQPRQALSFRTSGAELSILHG*
Ga0182008_108675481	3300014497	Rhizosphere	MHAFFVTMHILKCPPEAMFRALLLPGSFPKGSIVNDVMVRAASISEQPRQAVSLRTSVAKL*
Ga0157379_117226221	3300014968	Switchgrass Rhizosphere	MDAYFVTMDILKCPPEAMFRAPIRSLLGTFLKELIVSDVMVREANTFEQPRQALSFRTSGAELSILHG*
Ga0157376_104877851	3300014969	Miscanthus Rhizosphere	MDASFVTMDILKCPPEAMFRAQTQSLVRTFLKRLIVNDVMVREANIFAQLRQALSFRTSAAEL*
Ga0137405_13909034	3300015053	Vadose Zone Soil	MDAYFVTMDILKCPPEAMFRTLIRSLLGIFLKGLIVNDVMVRAANIFEQPRQALSFRTSVAEL*
Ga0167636_10062221	3300015075	Glacier Forefield Soils	VTMDILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVRAANILEQPRQALSFRTSVAEL*
Ga0182006_13227241	3300015261	Rhizosphere	MDACFVTMHILKCPTEPMFPTLIRSLLRTFLKVLIVNDVMARAANIFAQPSQALSFRTSRAEL*
Ga0182007_100494681	3300015262	Rhizosphere	MDACFVTIHIVKFPSEPMFPTLIRSLLGTFLKGLIVNDAMVRAANIFGQPRQALSFR
Ga0182007_104262591	3300015262	Rhizosphere	PGGWFRMDACFVTMHILKCPPELMFPTLIRSLLGTFLKGLIVNDAMVRAANIFEQPRQALSFRKSGAEL*
Ga0134072_100325561	3300015357	Grasslands Soil	RMDAYFVTMHILKCPPEAMFRALPLLGTFLKGLIVNDVMARAANIFEQPRRAPRFRTSVAEL*
Ga0134085_100306112	3300015359	Grasslands Soil	MDAYFVTMHILKCPPEAMFGALPLLGTFLKGLIVNDVMVRAANLFEQPRQALSLRTSVAEL*
Ga0132258_101739585	3300015371	Arabidopsis Rhizosphere	MDASFVTMDILKCPPEAMFRAQTQSLVRTFLKGLIVNDVMVREANIFEQLRQALSFRTSAAEL*
Ga0132257_1000465413	3300015373	Arabidopsis Rhizosphere	MDASFVTMDILKCPPEAMFRAQTQSLVRTFLKGLIVNDVMVREANIFAQLRQALSFRTSAAEL*
Ga0187807_11840802	3300017926	Freshwater Sediment	KCPPEAMFRALIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSVAVL
Ga0187772_105983912	3300018085	Tropical Peatland	MDAYFVTMHILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVLAANIFEQPRPALSFRTSVAEL
Ga0193720_10254041	3300019868	Soil	VIRRPGDWFRMDAYFVTMDILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSVAEL
Ga0193754_10012081	3300019872	Soil	MDAYFVTMDILKCPPEVMFRTLIRSLLGTSLKGLIVNDVMVRAANIFEQPRQALSLRTSLAEL
Ga0208479_10693192	3300025474	Arctic Peat Soil	MDAYFVTMDILKCLPEAMFRALIRSLRGTFPKGLIVNDVMVQAVNIFEQPRRALSFRTSVAEL
Ga0207699_109972671	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MHAYFVTMHILKCPPEAMFRAPPLLGTFLRGLIVNDVMVRVANIFEQPRQALNLRT
Ga0207700_110682412	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LKCPREAMFRALMIRSLLGTFLKGLIVNDVMVLEANIFEQPRQALSFRRSVAEL
Ga0209168_1000030234	3300027986	Surface Soil	MDAYFVTMHILKCLPETMFRAPTRSLLETFLKGLIVNDVMVRAANIFKQPTKALSFRTSLAQL
Ga0311365_111058681	3300029989	Fen	VPDSIPLIRRPGDWFRMDAYFVTMDILKCPPEAMFRALIRSLLGTFLKGLIANDVMVRAANIFEQPRQALSFRTSVAEL
Ga0308199_11301052	3300031094	Soil	RRPGDWFRMDAYFVTMDILKCPPEVMFRTLIRSLLGTSLKGLIVNDVMVPAANIFEQLRLQALSFRTSVAEL
Ga0308194_103361492	3300031421	Soil	HILKCPPAAMFRMLIRSLPGTFLKGLIVNDVMVRAANIFEQPRQALNLPTSVAEL
Ga0318516_104380632	3300031543	Soil	MDAYFVTMHILKCPPEAMFRTLIRSLLGTFLKGLIVNDVTVLAANIFEQPRQALSFRTSVAEL
Ga0318509_107852451	3300031768	Soil	ILKCPPEAMFRTLIRSLLGTFLKGLIVNDVMVRAANIFGQPRQALSSPTSVAEL
Ga0318508_10833421	3300031780	Soil	MDAYFVTMDILKCPPEAMFRALIRSLLGTFLKGLIVNDVMVLAANIFEQPKQALSFRTSVAEL
Ga0310917_111843741	3300031833	Soil	MDAYFVTMHILKCPPEAMFRTLIRSLLGTFLKGLIVNDVTVLAANIFEQPRQAL
Ga0307470_106642221	3300032174	Hardwood Forest Soil	ILKCPPEAMFRTLIRSLLGTFLKGLIVNDVMVRAANIFEQPRQALSFRTSVAEL
Ga0306920_1011902212	3300032261	Soil	MDAYFVTMDILKCPPEAMFRTLIRSLLGTFLKGLIVNDVMVRAANIFGQPRQALSSPTSVAEL
Ga0335076_110209812	3300032955	Soil	MPVIRRPGDWFRMDAYFVTMDILKFPPEAMFRALIRSLLGTFLKGLIVNDVMVRAANIFEQPSQALSLRS
Ga0310810_112375662	3300033412	Soil	DWFRMDAYFVTMDILKCPPEAMFRAPIRSLLRTFLKELIVSDVMVREANTFEQPRQALSFRTSGAELSILHG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095066

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences