NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F095048

Metagenome Family F095048

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095048
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 55 residues
Representative Sequence VKFASGHTRKVDHFTASAITQVHNALNDDNKKKFADMVHKSPEHFMKASDFAFKRAK
Number of Associated Samples 96
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 51.43 %
% of genes from short scaffolds (< 2000 bps) 47.62 %
Associated GOLD sequencing projects 92
AlphaFold2 3D model prediction Yes
3D model pTM-score0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (96.190 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(14.286 % of family members)
Environment Ontology (ENVO) Unclassified
(58.095 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(61.905 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.88%    β-sheet: 2.35%    Coil/Unstructured: 51.76%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.64
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF03420Peptidase_S77 25.71
PF07068Gp23 0.95
PF07244POTRA 0.95
PF01592NifU_N 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG0822Fe-S cluster assembly scaffold protein IscU, NifU familyPosttranslational modification, protein turnover, chaperones [O] 0.95


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A96.19 %
All OrganismsrootAll Organisms3.81 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001842|RCM30_1012830Not Available2052Open in IMG/M
3300001844|RCM35_1156462Not Available586Open in IMG/M
3300003277|JGI25908J49247_10134562Not Available581Open in IMG/M
3300003393|JGI25909J50240_1077392Not Available668Open in IMG/M
3300005527|Ga0068876_10613018Not Available588Open in IMG/M
3300005581|Ga0049081_10212662Not Available690Open in IMG/M
3300005585|Ga0049084_10138585Not Available854Open in IMG/M
3300006875|Ga0075473_10186430Not Available837Open in IMG/M
3300006916|Ga0070750_10340120Not Available635Open in IMG/M
3300007538|Ga0099851_1164259Not Available821Open in IMG/M
3300007541|Ga0099848_1058652Not Available1535Open in IMG/M
3300007960|Ga0099850_1032870Not Available2258Open in IMG/M
3300007960|Ga0099850_1352150Not Available551Open in IMG/M
3300008113|Ga0114346_1051973All Organisms → Viruses → Predicted Viral2040Open in IMG/M
3300008510|Ga0110928_1029310Not Available791Open in IMG/M
3300009182|Ga0114959_10094471All Organisms → Viruses → Predicted Viral1647Open in IMG/M
3300010160|Ga0114967_10277375Not Available869Open in IMG/M
(restricted) 3300013131|Ga0172373_10257492Not Available1147Open in IMG/M
3300013372|Ga0177922_10450989Not Available784Open in IMG/M
3300017722|Ga0181347_1145808Not Available648Open in IMG/M
3300017761|Ga0181356_1155425Not Available706Open in IMG/M
3300017766|Ga0181343_1145803Not Available660Open in IMG/M
3300020141|Ga0211732_1500569Not Available1500Open in IMG/M
3300020179|Ga0194134_10187644Not Available900Open in IMG/M
3300020183|Ga0194115_10099261Not Available1632Open in IMG/M
3300020194|Ga0181597_10197703Not Available977Open in IMG/M
3300020200|Ga0194121_10106352Not Available1775Open in IMG/M
3300020571|Ga0208723_1004501All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2674Open in IMG/M
3300021438|Ga0213920_1066814Not Available718Open in IMG/M
3300021960|Ga0222715_10154118Not Available1420Open in IMG/M
3300021963|Ga0222712_10761948Not Available538Open in IMG/M
3300022926|Ga0255753_1098666Not Available1441Open in IMG/M
3300023172|Ga0255766_10540386Not Available528Open in IMG/M
3300024512|Ga0255186_1004697Not Available1845Open in IMG/M
3300027659|Ga0208975_1061500All Organisms → Viruses → Predicted Viral1135Open in IMG/M
3300027712|Ga0209499_1267987Not Available586Open in IMG/M
3300027733|Ga0209297_1352967Not Available532Open in IMG/M
3300027736|Ga0209190_1231480Not Available742Open in IMG/M
3300027746|Ga0209597_1228629Not Available746Open in IMG/M
3300027756|Ga0209444_10124910Not Available1017Open in IMG/M
3300027763|Ga0209088_10366735Not Available565Open in IMG/M
3300027808|Ga0209354_10071592Not Available1405Open in IMG/M
3300028258|Ga0255214_1017893Not Available1225Open in IMG/M
3300031784|Ga0315899_10833186Not Available840Open in IMG/M
3300032093|Ga0315902_11275081Not Available520Open in IMG/M
3300032116|Ga0315903_10519614Not Available935Open in IMG/M
3300033233|Ga0334722_11315925Not Available505Open in IMG/M
3300033993|Ga0334994_0318298Not Available783Open in IMG/M
3300034020|Ga0335002_0403962Not Available758Open in IMG/M
3300034050|Ga0335023_0558234Not Available586Open in IMG/M
3300034092|Ga0335010_0554270Not Available592Open in IMG/M
3300034096|Ga0335025_0522212Not Available595Open in IMG/M
3300034104|Ga0335031_0858712Not Available501Open in IMG/M
3300034283|Ga0335007_0666525Not Available588Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater14.29%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake13.33%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous9.52%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake8.57%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake7.62%
Marine PlanktonEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton6.67%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic5.71%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater5.71%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater4.76%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater4.76%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton3.81%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh3.81%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater1.90%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment1.90%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.90%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.90%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater0.95%
Water BodiesEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Water Bodies0.95%
FreshwaterEnvironmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater0.95%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.95%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001836Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM27, ROCA_DNA191_0.2um_MCP-N_C_3aEnvironmentalOpen in IMG/M
3300001838Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM33, ROCA_DNA217_0.2um_bLM_C_2aEnvironmentalOpen in IMG/M
3300001839Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM40, ROCA_DNA238_2.0um_Ob_C_3bEnvironmentalOpen in IMG/M
3300001842Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM30, ROCA_DNA203_0.2um_MCP-S_C_2bEnvironmentalOpen in IMG/M
3300001843Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM34, ROCA_DNA218_2.0um_bLM_C_2bEnvironmentalOpen in IMG/M
3300001844Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM35, ROCA_DNA220_0.2um_bLM_C_3aEnvironmentalOpen in IMG/M
3300001851Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3bEnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300003393Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DDEnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005584Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRFEnvironmentalOpen in IMG/M
3300005585Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRFEnvironmentalOpen in IMG/M
3300006875Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300008110Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NAEnvironmentalOpen in IMG/M
3300008113Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NAEnvironmentalOpen in IMG/M
3300008261Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NAEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008448Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigsEnvironmentalOpen in IMG/M
3300008510Microbial Communities in Water bodies, Singapore - Site RAEnvironmentalOpen in IMG/M
3300008999Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545EnvironmentalOpen in IMG/M
3300009026Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575EnvironmentalOpen in IMG/M
3300009181Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaGEnvironmentalOpen in IMG/M
3300009182Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaGEnvironmentalOpen in IMG/M
3300010160Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaGEnvironmentalOpen in IMG/M
3300011995Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300013131 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10mEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017766Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.DEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300018041Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020109Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400mEnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020160Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020179Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0mEnvironmentalOpen in IMG/M
3300020183Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surfaceEnvironmentalOpen in IMG/M
3300020190Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surfaceEnvironmentalOpen in IMG/M
3300020194Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041403US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020200Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015020 Mahale Deep Cast 50mEnvironmentalOpen in IMG/M
3300020568Freshwater microbial communities from Lake Mendota, WI - 22JUN2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020571Freshwater microbial communities from Lake Mendota, WI - 31AUG2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020573Freshwater microbial communities from Lake Mendota, WI - 17JUL2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020603Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015035 Kigoma Deep Cast 150mEnvironmentalOpen in IMG/M
3300021093Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surfaceEnvironmentalOpen in IMG/M
3300021438Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MGEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022213Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1EnvironmentalOpen in IMG/M
3300022926Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaGEnvironmentalOpen in IMG/M
3300023172Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaGEnvironmentalOpen in IMG/M
3300024278Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepC_8dEnvironmentalOpen in IMG/M
3300024492Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_8hEnvironmentalOpen in IMG/M
3300024512Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_0hEnvironmentalOpen in IMG/M
3300025687Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027586Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027712Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027732Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027733Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027736Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027746Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027756Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027763Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027808Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)EnvironmentalOpen in IMG/M
3300028258Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepB_8dEnvironmentalOpen in IMG/M
3300028265Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Law_RepB_8hEnvironmentalOpen in IMG/M
3300031784Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032093Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300033233Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottomEnvironmentalOpen in IMG/M
3300033979Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003EnvironmentalOpen in IMG/M
3300033993Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037EnvironmentalOpen in IMG/M
3300033996Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004EnvironmentalOpen in IMG/M
3300034020Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055EnvironmentalOpen in IMG/M
3300034021Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057EnvironmentalOpen in IMG/M
3300034050Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095EnvironmentalOpen in IMG/M
3300034061Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028EnvironmentalOpen in IMG/M
3300034071Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110EnvironmentalOpen in IMG/M
3300034092Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069EnvironmentalOpen in IMG/M
3300034096Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098EnvironmentalOpen in IMG/M
3300034104Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120EnvironmentalOpen in IMG/M
3300034272Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156EnvironmentalOpen in IMG/M
3300034283Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
RCM27_100112413300001836Marine PlanktonKFATGETRKVDHYTASAITQLHNAVNDENKKKLADMVHKSPSHLMKAADFAFKHAK*
RCM33_100141743300001838Marine PlanktonRKVDHFTASAISQVHKALNDENKKKFADMVHKSPAHLMKAADFAFKHVK*
RCM40_107029313300001839Marine PlanktonVKFATGETRKVDHFTASAISQVHKALNDENKKKFADMVHKSPAHLMKAADFAFKHVK*
RCM30_101283053300001842Marine PlanktonKSAKSVKFATGETRKVDHFTASAISQVHKALNDENKKKFADMVHKSPAHLIKAADFAFKHVK*
RCM34_101250213300001843Marine PlanktonKVDHFTASAISQVHKALNDENKKKFADMVHKSPAHLMKAADFAFKHVK*
RCM35_115646223300001844Marine PlanktonKQAQSVKFASGHTRKVDHFTASAITQVHKSLNDDNKKKFADMVHKSPEHLQKAADFAFKHAK*
RCM31_1012914443300001851Marine PlanktonGETRKVDHYTASAITQVHKALNDENKKKFADMVHKSPAHFTKAADFAFSKSK*
JGI25908J49247_1013456223300003277Freshwater LakeIVAGKQAQSVKFANGQSRKVDHYTASAITQVHKAVNDDNKKKLSDMVHKSPAHFEKVAAFAFSKAK*
JGI25909J50240_107739223300003393Freshwater LakeFASGHTRKVDHFTASALTQVHNALNDDNKKKFAGMVHKSPEHFMKASDFAFKRAK*
Ga0068876_1056507413300005527Freshwater LakeQKVKFASGETRTVDHFTASALTQVHGALNDNNKKKFADMVHKSPGHFTKAADFAFSKSK*
Ga0068876_1061301823300005527Freshwater LakeFGNGQSRKVDHFTASAITQVHKALNDDNKKKFADMVHKSPAHLVKASDFAFSRAK*
Ga0049081_1021266223300005581Freshwater LenticDKQAQTVKFGNGQSKKVDHFTASAITQVHKALNDDNKKKFADMVHKSPAHLAKASDFAFSRAK*
Ga0049082_1017172813300005584Freshwater LenticTVDHYTASALTQVHGALSDDNKKKFSEMVHKSPGHFTKAADFAFSKSK*
Ga0049082_1026398013300005584Freshwater LenticQKVKFASGQTRTVDHYTASALTQVHGALNDDNKKKFAGMVHKSPEHFTKAADFAFSKSK*
Ga0049084_1013858533300005585Freshwater LenticAQSVKFASGHTRKIDHFTASAITQVHKALNDDNKKKFADMVHKSPEHFMKASDFAFKRAK
Ga0075473_1018643013300006875AqueousVNNKQSQSVKFASGHTRKVDHFTASAITQVHKALNDENKKKFADMVHKSPEHLQKAADFAFKQSK*
Ga0070750_1034012023300006916AqueousDHYTASAMTNVHKALKPENAKKYADLVHKSPEHFRKGSDFAFKAHNKK*
Ga0070746_1028334133300006919AqueousVDHYTASAMTNVHKALKPENKQKYADLAHKSPEHFMKASDFAFKAHAKK*
Ga0099851_116425913300007538AqueousKFGNGQTKKVDHYTASAITQVHKAVNDENKKKLADMVHKSPAHLVKVADFAFSKMK*
Ga0099848_105865213300007541AqueousKVDHFTASAITQVHKALNDENKKKFADMVHKSPAHLAKASDFAFKHAK*
Ga0099848_119796613300007541AqueousKQAKSVKFANGQTRKVDHYTASAMTNVHKALKPENAKKYADLVHKSPEHFRKGSDFAFKAHNKK*
Ga0099850_103287053300007960AqueousRVKFADGSTRKVDHFTASAITQVHKALNDDNKKKFADMVHKSPAHLAKAADFAFKRSK*
Ga0099850_131365313300007960AqueousRKVDHYTASAITQVHKALNDENKKKVADMVHKSPAHLAKVADFAFSKMK*
Ga0099850_135215013300007960AqueousRVKFADGSTRKVDHFTASAITQVHKALNDDNKKKFADMVHKSPAHLAKAADFAFKRAK*
Ga0114343_107628513300008110Freshwater, PlanktonGETRKVDHFTASALTQVHKALNDENKKKFADMVHKSPAHFSKASDFAFSKAK*
Ga0114346_105197313300008113Freshwater, PlanktonDKQAQTVKFGNGQSRKVDHFTASAITQVHKALNDDNKKKFADMVHKSPAHLVKASDFAFSRAK*
Ga0114336_102955513300008261Freshwater, PlanktonTVDHFTASALTQVHGALNDNNKKKFADMVHKSPGHFTKAADFAFSKSK*
Ga0114363_120515023300008266Freshwater, PlanktonQTVKFGNGQSRKVDHFTASAITQVHKALNDDNKKKFADMVHKSPAHLVKASDFAFSRAK*
Ga0114876_105932143300008448Freshwater LakeRKIDHFTASALTQVHKALNDDNKKKFADLVHKSPEHFQKASDFAFKHAK*
Ga0110928_102931033300008510Water BodiesKVDHYTASAITQVHNALNDENKKKFADMVHKSAAHLAKASDFAFSRMK*
Ga0102816_102817243300008999EstuarineSGETRTVDHFTASALTQVHGALHDDNKKKFADMVHKSPGHFTKAADFAFSKSK*
Ga0102829_127714813300009026EstuarineKCAAGETRTVDHFTASALTQVHGALNDDNKKKFADMVHKSPGHFTKAADFAFSKSK*
Ga0114969_1012070013300009181Freshwater LakeDHFTASAITQVHKALNDDNKKKFADMVHKSPEHFMKASDFAFKRAK*
Ga0114969_1055348013300009181Freshwater LakeRKVDHFTASALTQVHNALNDQNKKKFADMVHKSPGHFQKAADFAFKRAK*
Ga0114959_1009447113300009182Freshwater LakeVKFASGHTRKVDHFTASAITQVHNALNDDNKKKFADMVHKSPEHFMKASDFAFKRAK*
Ga0114967_1027737533300010160Freshwater LakeSGHTRKVDHFTASALTQVHNALNDDNKKKFADMVHKSPEHFMKASDFAFKRAK*
Ga0153800_102268913300011995FreshwaterYTASAITQVHKALNPLNKKKFADMVHKSPGHFSKASDFAFSKAK*
(restricted) Ga0172373_1025749243300013131FreshwaterKQAQSVKFGNGQSQKVDHYTASAITQVHNALNDENKKKFADMVHKSPAHLAKASDFAFSRAKK*
Ga0177922_1045098933300013372FreshwaterGHTRKVDHYTASAITQVHNALSDDNKKKFSDMVHKSPEHFMKAADFALKRAK*
Ga0177922_1128185213300013372FreshwaterSKKVDHYTASAITQVHKAVNDDNKKKLSDMVHKSPAHFEKVAAFAFSKAK*
Ga0181347_114580813300017722Freshwater LakeKSAQSVKFASGHTRKVDHFTASAITQVHNALNDDNKKKFADMVHKSPEHFMKASDFAFKRAK
Ga0181356_115542513300017761Freshwater LakeGHTRKIDTFTASALTQVHNALNDANKKKFADMVHKSPEHFMKASDFAFKRAK
Ga0181343_114580323300017766Freshwater LakeAKTGNSVKFANGVSRKIDHFTASAITQVHNALNDANKKKLSDMVHKSPEHLAKVADFAFSKRK
Ga0181349_126026923300017778Freshwater LakeSVKFASGHTRKVDHFTASAITQVHNALNDDNKKKFADMVHKSPEHFMKASDFAFKRAK
Ga0181346_110779813300017780Freshwater LakeSAQSVKFASGHTRKVDHFTASALTQVHNALNDDNTKKFADMVHKSPEHYIQASDYAFKRA
Ga0181355_119660933300017785Freshwater LakeSGHTRKIDTFTASALTQVHNALNDANKKKFADMVHKSPEHFMKASDFAFKRAK
Ga0181601_1051718113300018041Salt MarshKSRKVDGFTASAITQVHNALNDENKKKFAAMVHKSPEHFMKASEFAFKES
Ga0181359_113960733300019784Freshwater LakeAQKVKFATGETRKVDQYTASAITQVHKALNPLNKKKFADMVHKSPGHFSKASDFAFSKAK
Ga0194112_1050105733300020109Freshwater LakeVKFANGQTKKVDHYTASAITQVHKAVNDENKKKLADMVHKSPQHFAKVASFAFSKVK
Ga0211732_150056913300020141FreshwaterQSRKVDHFTASAITQVHKALNDDNKNKFADMVHKSPAHLVKASDFAFSRAK
Ga0211733_1040852913300020160FreshwaterKIDHFTASAIVNIHGALNDENKKKFASMIQKSPEHFSKASDFAFKQHK
Ga0211729_1020152713300020172FreshwaterQPVKFASGHSRKIDHFTASALTQVHNALNDDNKKKFADLVHKSPEHFMKASDFAFKHAK
Ga0194134_1018764413300020179Freshwater LakeNKQAQSVKFADGSSRKVDHYTASAITQVHKALNDENKKKFADMVHKSPAHLAKASDFAFSKAK
Ga0194115_1009926143300020183Freshwater LakeTVKFANGQTRKVDHYTASAITQVHNAINDENKKRLANMVHKSPEHLQKVSDFAFKRTAK
Ga0194118_1008157013300020190Freshwater LakeANGQTLKVDHYTASAITQVHNAINNENKKRLADMVHKSPEHLQKVSDFAFKRAAK
Ga0181597_1019770313300020194Salt MarshKVDHYTASAMTNVHKALKPENAKKYADLVHKSPDHFRKGSDFAFKAHNKKXAL
Ga0194121_1010635213300020200Freshwater LakeVNDKQAQSVKFSNGKSQKVDHFTASAITQVHNALNDENKKKFADMVHKSPAHLAKAADFAFRRAK
Ga0208598_102211713300020568FreshwaterTVKFGNGQTRKVDHFTASAITQVHKALNDDNKKKFADMVHKSPAHLVKASDFAFSRAK
Ga0208723_100450153300020571FreshwaterNGQTRKVDHFTASAITQVHKALNDDNKKKFADMVHKSPAHLVKASDFAFSRAK
Ga0208485_104605833300020573FreshwaterNKSAQKVKFASGETRTVDHFTASALTQVHGALNDDNKKKFADMVHKSPGHFTKAADFAFSKSK
Ga0194126_1027712313300020603Freshwater LakeVKFANGQTKKIDHYTASAITQVHKAVNDENKKKLADMVHKSPEHFAKVASFAFSKVK
Ga0194123_1004998363300021093Freshwater LakeRKVDHYTASAITQVHNAANDENKKKLADMVHKSPEHLQKVSDFAFKRAVKHR
Ga0213920_106681433300021438FreshwaterKFASGHTRKIDHFTASALTQVHKALNDENKKKFADLVHKSPEHFQKASDFAFKHAK
Ga0222715_1015411813300021960Estuarine WaterVDHYTASAITQVHKALNDDNKKKFADMVHKSPAHLAKAADFAFKRAK
Ga0222712_1076194823300021963Estuarine WaterTRKIDHFTASALTQVHKALNDDNKKKFADLVHKSPEHFMKASDFAFKHAK
Ga0224500_1019054013300022213SedimentKFGNGQSKKIDHFTASAITQVHNAVNDENKKKLADMIHKSPAHFEKVAAFAFSKAKK
Ga0255753_109866643300022926Salt MarshTASAMTNVHKALKPENAKKYADLVHKSPDHFRKGSDFAFKAHNKK
Ga0255766_1054038613300023172Salt MarshNGQTRKVDHYTASAMTNVHKALKPENAKKYADLVHKSPEHFRKGSDFAFKAHNKK
Ga0255215_102009513300024278FreshwaterRKVDHFTASAIVQVHKALNDDNKKKFADMVHKSPAHFSKASDFAFSKRKXILYRI
Ga0255189_104857923300024492FreshwaterFATGETRKVDHFTASAIVQVHKALNDDNKKKFADMVHKSPAHFSKASDFAFSKRK
Ga0255186_100469713300024512FreshwaterAAQKVKFATGETRKVDHFTASAIVQVHKALNDDNKKKFADMVHKSPAHFSKASDFAFSKRKXILYRI
Ga0208019_102173713300025687AqueousFANGQTRKVDHYTASAMTNVHKALKPENKQKYADLAHKSPEHFMKASDFAFKAHAKK
Ga0208966_116047213300027586Freshwater LenticKVDHYTASAITQVHNALNDDNKKKFADMVHKSPEHFMKAADFAFKRAK
Ga0208975_106150043300027659Freshwater LenticNKQAKSVKFASGHTRKVDHYTASAITNVHNALNDDNKKKFADMVHKSPEHFVKASDFAFSKHK
Ga0209499_126798723300027712Freshwater LakeHTRKVDHFTASALTQVHNALNDDNKKKFADMVHKSPEHFMKASDFAFKRAK
Ga0209442_125234513300027732Freshwater LakeFASGETRTVDHYTASALTQVHGALSDDNKKKFADMVHKSPGHFTKAADFAFSKSK
Ga0209297_135296713300027733Freshwater LakeSVKFASGHTRKVDHYTASAITNVHNALNDDNKKKFANMVHKSPEHFVKASDFAFSKHK
Ga0209190_123148033300027736Freshwater LakeQAQSVKFASGHTREVDHYTASAITNVHNALNEDNKKKFADMVHKSPEHFVKASDFAFSKH
Ga0209597_122862913300027746Freshwater LakeAKPVKFASGHTRKVDHFTASAITQVHSALNDDNKKKFADMVHKSPEHFMKASDFAFKRAK
Ga0209444_1012491043300027756Freshwater LakeRKIDHFTASALTQVHNALNDDNKKKFADLVHKSPEHFMKASDFAFKHAK
Ga0209088_1036673513300027763Freshwater LakeKQAKSVKFASGHTRKVDHFTASAITQVHKALSDDNKKKFADMVHKSPDHLMKAADFAFKHAK
Ga0209354_1007159243300027808Freshwater LakeGHTRKIDHFTAAAITQVHKALNDDNKKKFADMVHKSPEHFMKASDFAFKRAK
Ga0255214_101789313300028258FreshwaterGKAAQKVKFATGETRKVDHFTASAIVQVHKALNDDNKKKFADMVHKSPAHFSKASDFAFSKRKXILYRI
Ga0255197_105043123300028265FreshwaterTGETRKVDHFTASAIVQVHKALNDDNKKKFADMVHKSPAHFSKASDFAFSKRK
Ga0315899_1083318633300031784FreshwaterKIVSAKTGDSVKFGNGVTRKIDHFTASAITQVHNALNDANKKKLADMVHKSPEHLAKVADFAFSKRK
Ga0315909_1052641333300031857FreshwaterRKVDHYTASAITQVHKAVNDDNKKKLSDMVHKSPAHFEKVAAFAFSKAK
Ga0315901_1060859413300031963FreshwaterASGVTRTVDHFTASALTQVHGALNDNNKKKFADMVHKSPGHFTKAADFAFSKSK
Ga0315902_1127508123300032093FreshwaterDKQAQTVKFGNGQSRKVDHFTASAITQVHKALNDDNKKKFADMVHKSPAHLVKASDFAFSRAK
Ga0315903_1051961433300032116FreshwaterGQSSKVDHFTASAITQVHNALNDDNKKKFADMVHKSPAHLAKASDFAFSRAK
Ga0334722_1055542733300033233SedimentHSRKIDHFTASALTQVHNALNDDNKKKFADLVHKSPEHFMKASDFAFKHAK
Ga0334722_1131592513300033233SedimentSAQSVKFASGHTRKVDHYTASAITNVHKALNPENKKKFADMVHKSPEHFVKASDFSFKQH
Ga0334978_0176929_2_1573300033979FreshwaterETRKVDHLTASAITQVHKALNDENKKKFADMVHKSPAHFSKAADFAFSKSK
Ga0334994_0318298_610_7833300033993FreshwaterVKFGSGHSRKIDGYTASAITQVHNALNDENKKKFSDLVHKSPEHFEKASAFAFKHVK
Ga0334979_0320401_1_1773300033996FreshwaterSVKFATGETRKVDHFTASALTQVHKALNDENKKKFADMVHKSPAHFSKASDFAFSKAK
Ga0335002_0403962_577_7563300034020FreshwaterQKVKFGNGQTRTVDHYTASAVTQLHKALNDENKKKVSDMIHKSPEHFSKVASFAFSKVK
Ga0335004_0389631_1_1833300034021FreshwaterSQKFNFGNGQTRTVDHYTASAVTQLHKALNDENKKKVSDMIHKSPEHFSKVASFAFSKVK
Ga0335023_0558234_2_1573300034050FreshwaterQTRKVDHFTASAITQVHKALNDDNKKKFADMVHKSPAHLVKASDFAFSRAK
Ga0334987_0149463_2_1753300034061FreshwaterVKFGNGQTRKVDHFTASAITQVHNALNDDNKKKFADMVHKSPAHLAKASDFAFSRTK
Ga0335028_0484219_1_1593300034071FreshwaterCQSKKVDHFTASAITQVHKALNDDNKKKFADMVHKSPAHLAKASDFAFSRAK
Ga0335010_0233825_899_10963300034092FreshwaterVSNKSAQKVKFASGETRTVDHFTASALTQVHGALNDDNKKKFADMVHKSPGHFTKAADFAFSKSK
Ga0335010_0554270_2_1543300034092FreshwaterSRKIDGYTASAITQVHNALNDENKKKFSDLVHKSPEHFEKASAFAFKHVK
Ga0335025_0522212_3_1763300034096FreshwaterVKFGNGQSRKVDHFTASAITQVHKALNDDNKKKFADMVHKSPAHLVKASDFAFSRAK
Ga0335031_0858712_345_5003300034104FreshwaterHTRKVDHYTASAITQVHNALNDDNKKKFSDMMHKSPEHFMKAADFALKRAK
Ga0335049_0704007_445_6093300034272FreshwaterASGETRTVDHFTASALTQVHGALNDDNKKKFADMVHKSPGHFTKAADFAFSKSK
Ga0335007_0666525_408_5873300034283FreshwaterQTVKFGNGQTRKVDHFTASAITQVHKALNDDNKKKFADMVHKSPAHLVKASDFAFSRAK


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