Metagenome Family F095043

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095043
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	49 residues
Representative Sequence	MSIEKQQDMEVLGVDLSPSMSVKDRFAVRPHVMLNACLSLSWPDNSF
Number of Associated Samples	48
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	62.92 %
% of genes near scaffold ends (potentially truncated)	50.48 %
% of genes from short scaffolds (< 2000 bps)	71.43 %
Associated GOLD sequencing projects	48
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (92.381 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere (71.429 % of family members)
Environment Ontology (ENVO)	Unclassified (96.190 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant surface (71.429 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.33% β-sheet: 0.00% Coil/Unstructured: 74.67%
Feature Viewer

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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00665	rve	0.95
PF00078	RVT_1	0.95
PF10536	PMD	0.95
PF08284	RVP_2	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.95
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.95
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.95
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
All Organisms	root	All Organisms	7.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
cellular organisms	root	All Organisms → cellular organisms	6.67 %
Viruses	superkingdom	All Organisms → Viruses	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	6.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
commelinids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Poales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Poaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
PACMAD clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Panicoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	5.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Andropogonodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae	4.76 %
Panicodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Andropogoneae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae	4.76 %
Paniceae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Sorghinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae	3.81 %
Panicinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Sorghum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum	3.81 %
Panicum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.38 %
Sorghum bicolor	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	3.81 %
Panicum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005290\|Ga0065712_10060909	Not Available	580	Open in IMG/M
3300006881\|Ga0068865_102177678	Not Available	505	Open in IMG/M
3300013297\|Ga0157378_11826944	Not Available	656	Open in IMG/M
3300014486\|Ga0182004_10003438	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae	12589	Open in IMG/M
3300014486\|Ga0182004_10004287	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	11485	Open in IMG/M
3300014486\|Ga0182004_10004458	Not Available	11295	Open in IMG/M
3300014486\|Ga0182004_10007749	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	8738	Open in IMG/M
3300014486\|Ga0182004_10012587	Not Available	6733	Open in IMG/M
3300014486\|Ga0182004_10015678	All Organisms → cellular organisms → Eukaryota	5896	Open in IMG/M
3300014486\|Ga0182004_10021396	Not Available	4831	Open in IMG/M
3300014486\|Ga0182004_10024301	Not Available	4415	Open in IMG/M
3300014486\|Ga0182004_10031310	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	3638	Open in IMG/M
3300014486\|Ga0182004_10036228	Not Available	3238	Open in IMG/M
3300014486\|Ga0182004_10040630	Not Available	2952	Open in IMG/M
3300014486\|Ga0182004_10044692	Not Available	2714	Open in IMG/M
3300014486\|Ga0182004_10045234	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	2685	Open in IMG/M
3300014486\|Ga0182004_10051310	Not Available	2399	Open in IMG/M
3300014486\|Ga0182004_10070369	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	1784	Open in IMG/M
3300014486\|Ga0182004_10077889	All Organisms → Viruses → Predicted Viral	1621	Open in IMG/M
3300014486\|Ga0182004_10231111	Not Available	611	Open in IMG/M
3300014486\|Ga0182004_10240287	Not Available	592	Open in IMG/M
3300014486\|Ga0182004_10251357	Not Available	572	Open in IMG/M
3300014486\|Ga0182004_10279929	Not Available	528	Open in IMG/M
3300014486\|Ga0182004_10286839	Not Available	519	Open in IMG/M
3300014486\|Ga0182004_10298478	Not Available	504	Open in IMG/M
3300015267\|Ga0182122_1016704	Not Available	750	Open in IMG/M
3300015267\|Ga0182122_1042244	Not Available	586	Open in IMG/M
3300015269\|Ga0182113_1094954	Not Available	506	Open in IMG/M
3300015274\|Ga0182188_1048306	Not Available	539	Open in IMG/M
3300015276\|Ga0182170_1018286	Not Available	754	Open in IMG/M
3300015276\|Ga0182170_1051535	Not Available	567	Open in IMG/M
3300015276\|Ga0182170_1059613	Not Available	544	Open in IMG/M
3300015277\|Ga0182128_1035000	Not Available	637	Open in IMG/M
3300015282\|Ga0182124_1070128	Not Available	528	Open in IMG/M
3300015283\|Ga0182156_1067373	Not Available	545	Open in IMG/M
3300015283\|Ga0182156_1087758	Not Available	502	Open in IMG/M
3300015285\|Ga0182186_1069341	Not Available	531	Open in IMG/M
3300015288\|Ga0182173_1024447	Not Available	720	Open in IMG/M
3300015288\|Ga0182173_1081150	Not Available	512	Open in IMG/M
3300015291\|Ga0182125_1053998	Not Available	595	Open in IMG/M
3300015296\|Ga0182157_1066567	Not Available	576	Open in IMG/M
3300015299\|Ga0182107_1028865	Not Available	738	Open in IMG/M
3300015302\|Ga0182143_1019718	Not Available	817	Open in IMG/M
3300015302\|Ga0182143_1056825	Not Available	606	Open in IMG/M
3300015303\|Ga0182123_1024350	Not Available	748	Open in IMG/M
3300015303\|Ga0182123_1051504	Not Available	609	Open in IMG/M
3300015305\|Ga0182158_1063897	Not Available	585	Open in IMG/M
3300015308\|Ga0182142_1056835	Not Available	625	Open in IMG/M
3300015308\|Ga0182142_1114183	Not Available	504	Open in IMG/M
3300015321\|Ga0182127_1106005	Not Available	530	Open in IMG/M
3300015322\|Ga0182110_1109052	Not Available	524	Open in IMG/M
3300015322\|Ga0182110_1112012	Not Available	520	Open in IMG/M
3300015323\|Ga0182129_1076367	Not Available	572	Open in IMG/M
3300015323\|Ga0182129_1083469	Not Available	557	Open in IMG/M
3300015323\|Ga0182129_1088640	Not Available	546	Open in IMG/M
3300015344\|Ga0182189_1131248	Not Available	621	Open in IMG/M
3300015344\|Ga0182189_1150397	Not Available	591	Open in IMG/M
3300015346\|Ga0182139_1164980	Not Available	588	Open in IMG/M
3300015346\|Ga0182139_1182336	Not Available	565	Open in IMG/M
3300015346\|Ga0182139_1236205	Not Available	510	Open in IMG/M
3300015347\|Ga0182177_1186254	Not Available	563	Open in IMG/M
3300015351\|Ga0182161_1197698	Not Available	568	Open in IMG/M
3300015351\|Ga0182161_1245495	Not Available	520	Open in IMG/M
3300015355\|Ga0182159_1290170	Not Available	546	Open in IMG/M
3300015355\|Ga0182159_1310952	Not Available	530	Open in IMG/M
3300015355\|Ga0182159_1335428	Not Available	512	Open in IMG/M
3300017404\|Ga0182203_1107003	Not Available	579	Open in IMG/M
3300017410\|Ga0182207_1067612	Not Available	693	Open in IMG/M
3300017410\|Ga0182207_1163196	Not Available	516	Open in IMG/M
3300017413\|Ga0182222_1062404	Not Available	581	Open in IMG/M
3300017415\|Ga0182202_1128785	Not Available	515	Open in IMG/M
3300017417\|Ga0182230_1073823	Not Available	612	Open in IMG/M
3300017427\|Ga0182190_1110507	Not Available	578	Open in IMG/M
3300017427\|Ga0182190_1123795	Not Available	556	Open in IMG/M
3300017427\|Ga0182190_1154471	Not Available	514	Open in IMG/M
3300017427\|Ga0182190_1156404	Not Available	512	Open in IMG/M
3300017427\|Ga0182190_1159813	Not Available	508	Open in IMG/M
3300017430\|Ga0182192_1077017	Not Available	666	Open in IMG/M
3300017430\|Ga0182192_1130159	Not Available	556	Open in IMG/M
3300017433\|Ga0182206_1093099	Not Available	598	Open in IMG/M
3300017436\|Ga0182209_1021493	Not Available	962	Open in IMG/M
3300017438\|Ga0182191_1157757	Not Available	529	Open in IMG/M
3300017443\|Ga0182193_1057120	Not Available	763	Open in IMG/M
3300017683\|Ga0182218_1100685	Not Available	574	Open in IMG/M
3300017683\|Ga0182218_1145491	Not Available	511	Open in IMG/M
3300017684\|Ga0182225_1053311	Not Available	684	Open in IMG/M
3300017686\|Ga0182205_1087907	Not Available	630	Open in IMG/M
3300017690\|Ga0182223_1120423	Not Available	507	Open in IMG/M
3300025942\|Ga0207689_11394736	Not Available	587	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Phyllosphere	Host-Associated → Plants → Phyllosphere	71.43%
Roots	Host-Associated → Plants → Roots	23.81%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.90%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	71.43%
Unclassified	Host-Associated → Plants → Roots → Unclassified	23.81%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	71.43%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	23.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Miscanthus Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere	71.43%
Root	Host-Associated → Plants → Roots → Unclassified → Unclassified → Root	23.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014486	Endophyte microbial communities from Sorghum bicolor roots, Mead, Nebraska, USA - 072115-40_1 MetaG	Host-Associated	Open in IMG/M
3300015267	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015269	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015274	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015276	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015277	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015282	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015283	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015285	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015288	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015291	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015295	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015296	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015299	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015302	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015303	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015305	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015308	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015321	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015322	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015323	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015344	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015346	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015347	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015351	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015355	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300017404	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017410	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017411	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017413	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017415	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017417	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_07NOV2016_LD1 MG	Host-Associated	Open in IMG/M
3300017427	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017430	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017433	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017436	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017438	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017443	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017682	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_07NOV2016_LD1 MG	Host-Associated	Open in IMG/M
3300017683	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017684	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017686	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017690	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0065712_100609091	3300005290	Miscanthus Rhizosphere	MMVVQQQGMEVLGVNLSPSVSFKDRYAVRPHVMERSLTLSWPD
Ga0068865_1021776781	3300006881	Miscanthus Rhizosphere	MSIEKQQGKEALGVDLSPSVLVKDQFAIRPHVMLNACLSLSWSDNS
Ga0105243_128563761	3300009148	Miscanthus Rhizosphere	PCVNNEKRPDGMMVVQQQGMEVLGVNLSPSVSFKDRFAVRPHVMLNACLSLSWPDNSF*
Ga0157378_118269441	3300013297	Miscanthus Rhizosphere	MSIEKQQDMEVLGVDLSPSMSIKDRFFIRPHVMLNTCLSLSW
Ga0182004_100034388	3300014486	Root	MTIVKQQGMEVLGVNLSPAMLFKDRYVVRPLVMLNACLTLSWPDKSFQP*
Ga0182004_1000428716	3300014486	Root	MIVQQQGMEVLGVNLSPSVSVKDRFAVRPRVMLNACLTLSW
Ga0182004_1000445815	3300014486	Root	VLNNEWRPGGMTIVMQQGKEVLGVNLSPSVSFKDRYAVRPLVMLNACLTLS*
Ga0182004_100053361	3300014486	Root	MIVKQQGMEVLGVDLSPSVSCKDRYAIRRLVMLNGCLTLS*
Ga0182004_100077496	3300014486	Root	MTIVKQQGMEVLGVNLSPSVSFKDRYAVRPLVMLNACLTLSWPDKSF*
Ga0182004_100125874	3300014486	Root	VIVKQQGIEVMGVDLSPSLSVKDRYAVRPLVMLNACLTLSWPDKPFWLRSL*
Ga0182004_100137035	3300014486	Root	MLPWEQPCDNDEWRPGGNAIIKQQGMEVLGVDLSPSVSVKDRYAVRPLVMLNECLTLSWPDKSFRP*
Ga0182004_100156783	3300014486	Root	MTIVKQPGMEVLGVDLSPSMSFKDRYAVHPLVMLNACLTLSLLDKSF*
Ga0182004_100213964	3300014486	Root	GGMMIVKQQGIEVLGVNLSTSMSFKDRYVVRPLVMLSACLTLSWPDKSFRP*
Ga0182004_100243012	3300014486	Root	MNLRSDGMTIVQQQGMEVLGVNLSLSVSVKDQIAVCPHVMLNACLTLSWPDKS*
Ga0182004_100313102	3300014486	Root	MMVVKQQGIEVLGVDLSPSVSFEDRYVVRPLVMLNACLTLSWPDKSFRPKSL*
Ga0182004_100362282	3300014486	Root	MIVKQQGMEVLGVDLSPSVSFKDQYAVCPLVMLNACLTLSWPDKSF*
Ga0182004_100382841	3300014486	Root	VLIMNLRPGGMKIVQQQGMEVLGVNLSPSVSFKDRYVVRPRVMLNACLTLSWPDKSFRP*
Ga0182004_100406304	3300014486	Root	MIVQQQGMEVLGVNLSPSVSVKDRFVVRPRVMLNACLTLSW
Ga0182004_100446921	3300014486	Root	VLIMNLRPSGMMIVKQQGMEVLGVNLSPSVSFKDRYAVCPRVMLNACLTLSWPDKSFRP*
Ga0182004_100452342	3300014486	Root	MTIVKQQGMDVLGVDLSPSVSFKDRYTVRHLVMLNACLTLNWPDKSFRP*
Ga0182004_100513102	3300014486	Root	MIVQQQGMEVLGVNLSPSVSFKDRYAVLPHVMLNACLTLSWPDKSFRP*
Ga0182004_100703692	3300014486	Root	MIVKQQGMEVLGVNLSPSVSFKDRYAVRPLVMLNACLTLSWPDKSFRPRSL*
Ga0182004_100778891	3300014486	Root	PGGMTIVQQQGMEVLGVNLSPSVSFKDRIVVRPRVMLNACLTFSWPDKSFRP*
Ga0182004_102311111	3300014486	Root	GGMTIVQQQGMEVLGVNLSPSVSFKDRFAIRPHVMLNACLSLSWPDKSFRP*
Ga0182004_102402871	3300014486	Root	MMIVQQQGMEVLGVNLSPSVSVKDRFVVRPRVMLNACLTLRWPDNSF*
Ga0182004_102513571	3300014486	Root	MTIVQQQGMGVLGVNLSPSESFKDRIAVRPRVMLNACLSLSWPDKSFRPR
Ga0182004_102799292	3300014486	Root	GMTIVQQQDIEVLGVNLSPSVSFKDRYAVRPRVMLNAYLTLSWPDKSLLTVLNAHI*
Ga0182004_102868391	3300014486	Root	VLIMNLRPDGMTIVQQQDIEVLGVNLSPSVSFKDRYAVRPRVMLNACLTLSWPDKSLLTVLNAHI*
Ga0182004_102984781	3300014486	Root	PGGMTIVKQQGMEVLGVNLSPSVSVKDRFAVRPRVMLNACPPLSWPDKSF*
Ga0182122_10167041	3300015267	Miscanthus Phyllosphere	GKEVLDVDLSLSMLVKDRFDVRPYIMLNACLSLSWPDNSFRP*
Ga0182122_10422441	3300015267	Miscanthus Phyllosphere	VNNEWRPGGMSIEKQQGLEVLGVDLSPYMLVKDLFIVRPHVMLNACLSLSWPDNSFRP*
Ga0182113_10896531	3300015269	Miscanthus Phyllosphere	MIEKQQGMEVLGAYLSPSVSIKDRFTVCPHVMLNACLALSWLDLM
Ga0182113_10949541	3300015269	Miscanthus Phyllosphere	MSIEKQLGMEVLGVDLSPSVSVKDRFAIHPHVMLNACLSLNWP
Ga0182188_10483061	3300015274	Miscanthus Phyllosphere	MSIEKQQDMEVLSVDLSPSVSVKDRFAVRPHVMLNACLALSWPDKSFQPQR*
Ga0182170_10182861	3300015276	Miscanthus Phyllosphere	MIEKQQGMEVLGDYLSPSMSIKDQFVVRPHVLLNAFISLSWPDNSF
Ga0182170_10515351	3300015276	Miscanthus Phyllosphere	EKQQGMEVLGVDLSPSMLVKDRFAICPHVMLNACLSLSWPDNSF*
Ga0182170_10596131	3300015276	Miscanthus Phyllosphere	GMLIEKQQDKEVLGVDLSASMSVKDRFAVCPHVMLNACLSLSWPDNSFQP*
Ga0182128_10350001	3300015277	Miscanthus Phyllosphere	QDMEVLCVDLSLSVSVKDRFTVRPYIILNACLSLSWPDNSF*
Ga0182124_10701281	3300015282	Miscanthus Phyllosphere	GGMSIEKQQGKEALGVYLSPSESFKDRFTVRPHVMLNACLSLSWPDNSF*
Ga0182156_10673731	3300015283	Miscanthus Phyllosphere	NEWRPGGISIEKQQGAEVLGVDLSPSVSVKDQFVVCPHVMLNACLSLSRPDNSF*
Ga0182156_10877581	3300015283	Miscanthus Phyllosphere	MSIEKQQDMEVLGVDLSPSVSVKDRFAICPHVMLNACLALSWPDKLF*
Ga0182186_10280711	3300015285	Miscanthus Phyllosphere	MSIEKQQGKEVLGVDLSPSVSVKDRFVVHPHVMLN
Ga0182186_10693411	3300015285	Miscanthus Phyllosphere	MSIEKQQGMEVLGVDLSPSMLVKDRFTVRPHVMLNACLSLSWPDNSFRP
Ga0182173_10244471	3300015288	Miscanthus Phyllosphere	MIKKQQGMEVLGAYLSPSMSVKDRFTVRPHVMLNACLALSW
Ga0182173_10485031	3300015288	Miscanthus Phyllosphere	VNNEWRPSGMLIEKQQDMEVLGVDLSPSVSVKDRFAMRPHVMLNACLSLSWLDNSF*
Ga0182173_10811501	3300015288	Miscanthus Phyllosphere	MSIEKQQGKEVLGVDLSLSVLVKDRFAVRPHVMLNACLSLSWPNNSFRPAE*
Ga0182125_10539981	3300015291	Miscanthus Phyllosphere	MSIEKQKGKEVLGVDLSPSMSVKDRFVVCHHVMLNACLSLSWPDNSF*
Ga0182175_10143382	3300015295	Miscanthus Phyllosphere	VNNEKGPDGMTIVQQQGMEVLGVNLSPSVSFKDRCAVRPHVMLNACLSLSWLDNSF*
Ga0182175_10773031	3300015295	Miscanthus Phyllosphere	VLTNKTRLGGIVIEKQQGMEVMRAYLSSSVSVKDRFTIRPHVMLNAYLSLSWLDNSF
Ga0182157_10665671	3300015296	Miscanthus Phyllosphere	MSIEKQQGKKVLGVDLSLFVLVKDRFIIRPHVMLNT
Ga0182157_10864492	3300015296	Miscanthus Phyllosphere	MAIEKQQGKEVLGVDLSPSVSVKDQFAVRPHVMLNACLSLSWPNNSFRPQSRVA
Ga0182107_10288652	3300015299	Miscanthus Phyllosphere	MSIEKQQGKEVLGVYLSPSESFKDRFAVRPHVMLNACLSLSWPDNSF
Ga0182143_10197181	3300015302	Miscanthus Phyllosphere	VNIEWRPGEMSIEKQQVKEVLCMDLSPSVSVNGQFVVRPHVMLNACLSLSWSDNSF*
Ga0182143_10568251	3300015302	Miscanthus Phyllosphere	GMSIEKQQGMDVLGVDLSPSVSVKDRFAVHPHVMLNVCLSLSWSDNSF*
Ga0182123_10243501	3300015303	Miscanthus Phyllosphere	MIKKQQGMEVLGAYLSPSVSVKDRFAVRPHVMLNACLALSWSDKSFRP*
Ga0182123_10515041	3300015303	Miscanthus Phyllosphere	MLIEKQQGKEVLGVDLSPSVSVKDRFAVRPHVILNACLSLSCPDNSF*
Ga0182158_10638972	3300015305	Miscanthus Phyllosphere	MSIEKQQYKEVLGVDLSPSVSVMDQFIVRTHVMLNACL
Ga0182142_10568351	3300015308	Miscanthus Phyllosphere	MSIEKQQDMEVLGVDLSPSVSFKNRFAVRPHVMLNACLSLSWSDNSFRPRSRVAQL
Ga0182142_11141831	3300015308	Miscanthus Phyllosphere	PSGIVVEKQQGIEVLGAYLSPSVLIKDRFAIHPQVTLNACLALS*
Ga0182127_11060051	3300015321	Miscanthus Phyllosphere	VNNEWRQGGMSIEKQQGKVVLGVDLSPSVLVKDRFAVCAHIILNACLSLSWPDNSF*
Ga0182110_11090521	3300015322	Miscanthus Phyllosphere	MSIEKQQCMEVLGVDLSPSVSVKDRFAIHPHVMLNACLSLNWPDNSFRPRSRLAQF
Ga0182110_11090801	3300015322	Miscanthus Phyllosphere	VIKKQQGMEVLGAYLSPSVSIKDRFAVCPHVMLNACLALSW
Ga0182110_11120121	3300015322	Miscanthus Phyllosphere	MIKKQQGMEVLGAYLSPFVSVKDPFAVRPHVMLKACLALSCPDPM
Ga0182129_10763671	3300015323	Miscanthus Phyllosphere	MIKKQQGMEVLGAYLSPSVLVKDRFTVRPHIMLNACLALSWLDKSFRS*
Ga0182129_10834691	3300015323	Miscanthus Phyllosphere	MSIEKQQGKEVLGVDLSPSVSVKDQFAVHPHVMLNACLALS*
Ga0182129_10886401	3300015323	Miscanthus Phyllosphere	MLIEKQQDMEVLGVDLSPSVSVKDRFAMRPHVMLNACLSLSWLDNSF*
Ga0182189_11312481	3300015344	Miscanthus Phyllosphere	VIEKQQGMEVLGAYLSPSVSVKDRFAICPHVMLNACLSLSWPDNSF*
Ga0182189_11503971	3300015344	Miscanthus Phyllosphere	MSIEKQQDMEVLGVDLSPSVSVKDRFAVRPHVMLNVCLSLSWSDNSI*
Ga0182139_11649801	3300015346	Miscanthus Phyllosphere	MLIEKQQGKEVLGVDLSPSVLVKDQFVVRPHAMLNACLSLSRLDNSFRP*
Ga0182139_11823361	3300015346	Miscanthus Phyllosphere	MIEKRQGMAVLGAYLSSSVSIKDRFDVRPHVMLNTCLALSWPNP
Ga0182139_12362051	3300015346	Miscanthus Phyllosphere	MSIEKQQCKEDLAVDLSPSVSVKDQFAIRPNVMLNACLSFSWPDNSF*
Ga0182177_10706711	3300015347	Miscanthus Phyllosphere	VIEKQQGIEVLGAYLSPSVSIKDTFAVRPHVILNACLALSWPD
Ga0182177_11862541	3300015347	Miscanthus Phyllosphere	GEILIEKQQGMDVLGVDLSPFVLVKDRCAVRPHVMLNTCLSLSWPDNSFRP*
Ga0182161_11976981	3300015351	Miscanthus Phyllosphere	MSIEKQQGMEVLGVDLSPSMSGKDRFAVRAHVMLNACLSLSWLDNSF*
Ga0182161_12454951	3300015351	Miscanthus Phyllosphere	MSIEKQQGKVVLGVDLSPSVLVKDRFAVCPHVMLNTRLALSRLDKSFRL*
Ga0182159_12901701	3300015355	Miscanthus Phyllosphere	VVQQQGMEVLGVNLSLSVSFKDRYTIRPHVMLNTA*
Ga0182159_13109521	3300015355	Miscanthus Phyllosphere	GGMSIEKQQGKEVLGVDLSPSVSVKDQFAVRPHVMLNACLSLS*
Ga0182159_13354281	3300015355	Miscanthus Phyllosphere	PGGMSIEKQQGKEVLGVDLSPSVSVKDRFAVHPHVMLNACLSLSWPDNSF*
Ga0182203_11070031	3300017404	Miscanthus Phyllosphere	NEWRPGEMSIGKQQGIEVLGVDLSLSVLVKDRFDVRPHVMLNACLSLSWPDNSFRP
Ga0182207_10676121	3300017410	Miscanthus Phyllosphere	MIKKQQGMEVLGAYLSPSMSVKDQFAVRPHVMLKACLALSSPDPMIXS
Ga0182207_11631961	3300017410	Miscanthus Phyllosphere	MSIEKQQGMEVLGVDLSPSMSVKDRFAARPYVMLNASLSHSWPDNSFSTVKP
Ga0182208_10784891	3300017411	Miscanthus Phyllosphere	LCVNNEWRPGGVSIEKQQGMEVLGMDLSPSMSVKDRFTVHPHIMLNACLSLSWPDNSFQPQSRVA
Ga0182222_10624041	3300017413	Miscanthus Phyllosphere	MSIEKQQDKEVLGVDLSPFVSFKDRFVVCPHVMLNTA
Ga0182202_11287851	3300017415	Miscanthus Phyllosphere	MSIEKQQGKEVLGVYLSPSESFKDRFAVRPHVMLNACLSLSWPDNSFRPRSRVAQL
Ga0182202_11332781	3300017415	Miscanthus Phyllosphere	VNNEWRLGGMSIEKQQGMEVLGVDLSPSVLVKDRFAVRPHVMLKACISLSWLDNSFRS
Ga0182230_10549201	3300017417	Miscanthus Phyllosphere	MSIEKQQGTEVLGVDLSPSVSVKDRFAVRPHVMLNACLSLNWLDNSFRPQSRVAQL
Ga0182230_10738231	3300017417	Miscanthus Phyllosphere	MIEKQQGMDVFGAYLSLSVLIKDRFDVRHHVMLNACLTLSWPNLV
Ga0182190_11105071	3300017427	Miscanthus Phyllosphere	VNNKWRPGRMSIEKQQGKEVLGVDLSPSMSVKDRFAVRPHVMLNACLSLCWPDNLF
Ga0182190_11237951	3300017427	Miscanthus Phyllosphere	SIEKQQGKEVLGVDLSPSMSVKDRFVVRPHVMLNACLSLSWPDNSF
Ga0182190_11544711	3300017427	Miscanthus Phyllosphere	MIEKQQGMEVLGSYLSPSMSIKDRFAIHPHVMLNACLAISWPDLVI
Ga0182190_11564041	3300017427	Miscanthus Phyllosphere	MSIEEATRQGGLGVDLSPSVSVKNRFAVHPHVMLNACLSLSWPDNS
Ga0182190_11598131	3300017427	Miscanthus Phyllosphere	MSIENQQGMEVLGVDLSPSVSVKDRFAVRPHVMLNACLSLSWPDNSFRP
Ga0182192_10770171	3300017430	Miscanthus Phyllosphere	MSIEKEQGKEVLGVDLSPSMSVKDRFAARPYVMLNASLSHSWPDN
Ga0182192_11301592	3300017430	Miscanthus Phyllosphere	MSIEKQQGKEVLGVDLSLSVSVKDRFVIRPHVMLNACLSLSWPSSS
Ga0182206_10930991	3300017433	Miscanthus Phyllosphere	MLIEKQQDKEVLGVDLSASMSVKDRFAVCPHVMLNACLSLSCPDNSFRPLS
Ga0182209_10214931	3300017436	Miscanthus Phyllosphere	MSIEKQQDMEVLGVDLSPSMSVKDRFAVRPHVMLNACLSLSWPDNSF
Ga0182191_11577571	3300017438	Miscanthus Phyllosphere	MSIEKQQCKEDLAVDLSPSVSVKDQFAIRPNVMLNACLSFSWPDNSF
Ga0182193_10571201	3300017443	Miscanthus Phyllosphere	MSIEKQQAMEVLGVDLSLSVSVKDRFDVRPHIILNACLSLSWSDNSF
Ga0182229_10596381	3300017682	Miscanthus Phyllosphere	MSIEKQQDMEVLGVDLSPFVSFKDRCAVRPHVMLNACLSLSWLDNSFRP
Ga0182218_11006852	3300017683	Miscanthus Phyllosphere	VIEKQQGMEVLGAYLSPSVSVKDQFDVRPHAMLNACLALSWPDLVIR
Ga0182218_11454911	3300017683	Miscanthus Phyllosphere	IKRRPSGMLIEKQQGMEVLGVDLSPSMSVKDRFVVRPHAMLNASLSLSWPDNSFRP
Ga0182225_10533111	3300017684	Miscanthus Phyllosphere	MSIEKQQGMEVLGVDLSPFVSVKDRFAIRPHAMLNACLSLSWPDNSFQL
Ga0182205_10879071	3300017686	Miscanthus Phyllosphere	LIEKQQGKEVLGVDLSPSMSVKDQFAVRPHVMLNACLSLSWPDNSFRPQS
Ga0182223_11204231	3300017690	Miscanthus Phyllosphere	MSIEKSQDMEVLGVDLSLSVSVKDRFIVHPHVMLNACRSLSWPDNSF
Ga0207689_113947361	3300025942	Miscanthus Rhizosphere	MSIEKQQGKEVLGVYLSPSESFKDRFAVRPHVMLNACLSLSWPDNS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F095043

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences