NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F095032

Metagenome Family F095032

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F095032
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 48 residues
Representative Sequence VILLTDLHDLAVRQGDETGFQLTMEELRKTHAAKDSFLRRLTKAKL
Number of Associated Samples 84
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 5.71 %
% of genes near scaffold ends (potentially truncated) 93.33 %
% of genes from short scaffolds (< 2000 bps) 84.76 %
Associated GOLD sequencing projects 78
AlphaFold2 3D model prediction Yes
3D model pTM-score0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (73.333 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog
(48.571 % of family members)
Environment Ontology (ENVO) Unclassified
(52.381 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(46.667 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 52.70%    β-sheet: 0.00%    Coil/Unstructured: 47.30%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.63
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF02661Fic 13.33
PF01381HTH_3 5.71
PF00589Phage_integrase 1.90
PF05973Gp49 1.90
PF02265S1-P1_nuclease 0.95
PF13586DDE_Tnp_1_2 0.95
PF00929RNase_T 0.95
PF08240ADH_N 0.95
PF13565HTH_32 0.95
PF07369DUF1488 0.95
PF13581HATPase_c_2 0.95
PF02768DNA_pol3_beta_3 0.95
PF13744HTH_37 0.95
PF00561Abhydrolase_1 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG3657Putative component of the toxin-antitoxin plasmid stabilization moduleDefense mechanisms [V] 1.90
COG4679Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin systemDefense mechanisms [V] 1.90
COG0592DNA polymerase III sliding clamp (beta) subunit, PCNA homologReplication, recombination and repair [L] 0.95


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms73.33 %
UnclassifiedrootN/A26.67 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300006893|Ga0073928_10455919All Organisms → cellular organisms → Bacteria925Open in IMG/M
3300009627|Ga0116109_1109441All Organisms → cellular organisms → Bacteria598Open in IMG/M
3300010341|Ga0074045_10143518All Organisms → cellular organisms → Bacteria1626Open in IMG/M
3300010343|Ga0074044_11151832All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300014153|Ga0181527_1292372All Organisms → cellular organisms → Bacteria → Acidobacteria644Open in IMG/M
3300014156|Ga0181518_10520168Not Available561Open in IMG/M
3300014168|Ga0181534_10788638Not Available561Open in IMG/M
3300014491|Ga0182014_10016908All Organisms → cellular organisms → Bacteria6481Open in IMG/M
3300014492|Ga0182013_10078729Not Available2320Open in IMG/M
3300014492|Ga0182013_10342734All Organisms → cellular organisms → Bacteria821Open in IMG/M
3300014493|Ga0182016_10065040Not Available2741Open in IMG/M
3300014496|Ga0182011_10325570All Organisms → cellular organisms → Bacteria1015Open in IMG/M
3300014499|Ga0182012_10723004All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora chokoriensis634Open in IMG/M
3300014501|Ga0182024_11527421Not Available761Open in IMG/M
3300014502|Ga0182021_10900059All Organisms → cellular organisms → Bacteria1064Open in IMG/M
3300014655|Ga0181516_10181721All Organisms → cellular organisms → Bacteria → Acidobacteria1067Open in IMG/M
3300014655|Ga0181516_10627333All Organisms → cellular organisms → Bacteria → Acidobacteria555Open in IMG/M
3300014657|Ga0181522_10143666All Organisms → cellular organisms → Bacteria1393Open in IMG/M
3300014658|Ga0181519_10176822All Organisms → cellular organisms → Bacteria1352Open in IMG/M
3300014658|Ga0181519_10237565All Organisms → cellular organisms → Bacteria1140Open in IMG/M
3300014838|Ga0182030_11195436All Organisms → cellular organisms → Bacteria → Acidobacteria650Open in IMG/M
3300018037|Ga0187883_10531423All Organisms → cellular organisms → Bacteria → Acidobacteria607Open in IMG/M
3300018047|Ga0187859_10041544All Organisms → cellular organisms → Bacteria2458Open in IMG/M
3300022877|Ga0224527_1000788All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae18875Open in IMG/M
(restricted) 3300023060|Ga0224519_1051482All Organisms → cellular organisms → Bacteria → Acidobacteria521Open in IMG/M
3300023091|Ga0224559_1001105All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria15422Open in IMG/M
3300023258|Ga0224535_1117847Not Available564Open in IMG/M
3300025404|Ga0208936_1004651All Organisms → cellular organisms → Bacteria1619Open in IMG/M
3300025574|Ga0208717_1056892All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola916Open in IMG/M
3300026456|Ga0255351_1092327All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300026502|Ga0255350_1028123All Organisms → cellular organisms → Bacteria1466Open in IMG/M
3300027634|Ga0209905_1023691All Organisms → cellular organisms → Bacteria882Open in IMG/M
3300028070|Ga0255353_1053395Not Available813Open in IMG/M
3300028070|Ga0255353_1080291All Organisms → cellular organisms → Bacteria → Acidobacteria570Open in IMG/M
3300028552|Ga0302149_1071969All Organisms → cellular organisms → Bacteria889Open in IMG/M
3300028560|Ga0302144_10224851All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300028566|Ga0302147_10169958All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300028574|Ga0302153_10040302Not Available1561Open in IMG/M
3300028745|Ga0302267_10266093All Organisms → cellular organisms → Bacteria737Open in IMG/M
3300028762|Ga0302202_10191857Not Available1054Open in IMG/M
3300028779|Ga0302266_10154296All Organisms → cellular organisms → Bacteria896Open in IMG/M
3300028781|Ga0302223_10279567All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300028783|Ga0302279_10337409All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300028785|Ga0302201_10088159Not Available1424Open in IMG/M
3300028785|Ga0302201_10177580All Organisms → cellular organisms → Bacteria → Acidobacteria897Open in IMG/M
3300028785|Ga0302201_10278016All Organisms → cellular organisms → Bacteria672Open in IMG/M
3300028788|Ga0302189_10046820All Organisms → cellular organisms → Bacteria2182Open in IMG/M
3300028801|Ga0302226_10279341Not Available705Open in IMG/M
3300028813|Ga0302157_10377592Not Available759Open in IMG/M
3300028867|Ga0302146_10222356All Organisms → cellular organisms → Bacteria742Open in IMG/M
3300028873|Ga0302197_10067605All Organisms → cellular organisms → Bacteria1902Open in IMG/M
3300028873|Ga0302197_10183761All Organisms → cellular organisms → Bacteria985Open in IMG/M
3300028873|Ga0302197_10206646All Organisms → cellular organisms → Bacteria914Open in IMG/M
3300028874|Ga0302155_10126862All Organisms → cellular organisms → Bacteria1130Open in IMG/M
3300029907|Ga0311329_10691548Not Available663Open in IMG/M
3300029908|Ga0311341_10005169All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae15038Open in IMG/M
3300029908|Ga0311341_10028915All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4732Open in IMG/M
3300029908|Ga0311341_10503048All Organisms → cellular organisms → Bacteria → Acidobacteria690Open in IMG/M
3300029910|Ga0311369_10438972All Organisms → cellular organisms → Bacteria1124Open in IMG/M
3300029911|Ga0311361_11128974All Organisms → cellular organisms → Bacteria637Open in IMG/M
3300029911|Ga0311361_11157895All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300029913|Ga0311362_10076309All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4691Open in IMG/M
3300029913|Ga0311362_10454180All Organisms → cellular organisms → Bacteria1218Open in IMG/M
3300029916|Ga0302148_1105165All Organisms → cellular organisms → Bacteria800Open in IMG/M
3300029917|Ga0311326_10436626All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300029918|Ga0302143_1069096Not Available819Open in IMG/M
3300029919|Ga0302141_1010768Not Available2526Open in IMG/M
3300029919|Ga0302141_1029501Not Available1505Open in IMG/M
3300029922|Ga0311363_11112056All Organisms → cellular organisms → Bacteria677Open in IMG/M
3300029922|Ga0311363_11248169All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300029939|Ga0311328_10772213All Organisms → cellular organisms → Bacteria → Acidobacteria644Open in IMG/M
3300029943|Ga0311340_11441190All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300029945|Ga0311330_10407042All Organisms → cellular organisms → Bacteria1125Open in IMG/M
3300029953|Ga0311343_10194352All Organisms → cellular organisms → Bacteria2119Open in IMG/M
3300029953|Ga0311343_11177690All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300029954|Ga0311331_10294561All Organisms → cellular organisms → Bacteria1734Open in IMG/M
3300029955|Ga0311342_10947800All Organisms → cellular organisms → Bacteria → Acidobacteria644Open in IMG/M
3300029985|Ga0302280_1025988All Organisms → cellular organisms → Bacteria2736Open in IMG/M
3300029992|Ga0302276_10332252Not Available647Open in IMG/M
3300030004|Ga0302186_10063158Not Available1473Open in IMG/M
3300030020|Ga0311344_10370666All Organisms → cellular organisms → Bacteria1332Open in IMG/M
3300030044|Ga0302281_10090443Not Available1436Open in IMG/M
3300030044|Ga0302281_10119452All Organisms → cellular organisms → Bacteria1190Open in IMG/M
3300030044|Ga0302281_10270443Not Available686Open in IMG/M
3300030045|Ga0302282_1181426Not Available806Open in IMG/M
3300030049|Ga0302191_10063111Not Available1578Open in IMG/M
3300030051|Ga0302195_10102875All Organisms → cellular organisms → Bacteria1428Open in IMG/M
3300030058|Ga0302179_10373265Not Available628Open in IMG/M
3300030507|Ga0302192_10111278All Organisms → cellular organisms → Bacteria1263Open in IMG/M
3300030508|Ga0302185_10095901All Organisms → cellular organisms → Bacteria1072Open in IMG/M
3300030508|Ga0302185_10109086All Organisms → cellular organisms → Bacteria988Open in IMG/M
3300030508|Ga0302185_10201936All Organisms → cellular organisms → Bacteria → Acidobacteria678Open in IMG/M
3300030518|Ga0302275_10006737All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae10818Open in IMG/M
3300030518|Ga0302275_10477203All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300030646|Ga0302316_10056189Not Available1755Open in IMG/M
3300030687|Ga0302309_10378444Not Available690Open in IMG/M
3300031259|Ga0302187_10397298Not Available653Open in IMG/M
3300031259|Ga0302187_10517575All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales544Open in IMG/M
3300031524|Ga0302320_10770914All Organisms → cellular organisms → Bacteria1072Open in IMG/M
3300032562|Ga0316226_1360455All Organisms → cellular organisms → Bacteria540Open in IMG/M
3300033402|Ga0326728_10157430All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2436Open in IMG/M
3300033743|Ga0334844_122057All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Aminobacter → Aminobacter aminovorans518Open in IMG/M
3300033823|Ga0334837_022069Not Available2261Open in IMG/M
3300033982|Ga0371487_0329263All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium679Open in IMG/M
3300034065|Ga0334827_085683Not Available1067Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog48.57%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil10.48%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog7.62%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen6.67%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa6.67%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog5.71%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland1.90%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.90%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.90%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen1.90%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.90%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater0.95%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.95%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.95%
Thawing PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost0.95%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.95%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300009627Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_10EnvironmentalOpen in IMG/M
3300010341Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300014153Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaGEnvironmentalOpen in IMG/M
3300014156Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaGEnvironmentalOpen in IMG/M
3300014168Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaGEnvironmentalOpen in IMG/M
3300014491Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaGEnvironmentalOpen in IMG/M
3300014492Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaGEnvironmentalOpen in IMG/M
3300014493Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaGEnvironmentalOpen in IMG/M
3300014496Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaGEnvironmentalOpen in IMG/M
3300014499Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014502Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014655Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaGEnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300014658Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaGEnvironmentalOpen in IMG/M
3300014838Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300018037Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10EnvironmentalOpen in IMG/M
3300018047Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10EnvironmentalOpen in IMG/M
3300022877Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T0EnvironmentalOpen in IMG/M
3300023060 (restricted)Peat soil microbial communities from Stordalen Mire, Sweden - IR.B.S.T0EnvironmentalOpen in IMG/M
3300023091Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34EnvironmentalOpen in IMG/M
3300023258Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 30-34EnvironmentalOpen in IMG/M
3300025404Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025574Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 shallow (SPAdes)EnvironmentalOpen in IMG/M
3300026456Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r2EnvironmentalOpen in IMG/M
3300026502Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r1EnvironmentalOpen in IMG/M
3300027634Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812S1MEnvironmentalOpen in IMG/M
3300028070Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T25EnvironmentalOpen in IMG/M
3300028552Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_1EnvironmentalOpen in IMG/M
3300028560Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2EnvironmentalOpen in IMG/M
3300028566Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2EnvironmentalOpen in IMG/M
3300028574Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_2EnvironmentalOpen in IMG/M
3300028745Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3EnvironmentalOpen in IMG/M
3300028762Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3EnvironmentalOpen in IMG/M
3300028779Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_2EnvironmentalOpen in IMG/M
3300028781Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3EnvironmentalOpen in IMG/M
3300028783Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3EnvironmentalOpen in IMG/M
3300028785Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_2EnvironmentalOpen in IMG/M
3300028788Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2EnvironmentalOpen in IMG/M
3300028801Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3EnvironmentalOpen in IMG/M
3300028813Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3EnvironmentalOpen in IMG/M
3300028867Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_3EnvironmentalOpen in IMG/M
3300028873Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1EnvironmentalOpen in IMG/M
3300028874Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1EnvironmentalOpen in IMG/M
3300029907I_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300029908II_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029910III_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300029911III_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029913III_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029916Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_1EnvironmentalOpen in IMG/M
3300029917I_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029918Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_1EnvironmentalOpen in IMG/M
3300029919Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_2EnvironmentalOpen in IMG/M
3300029922III_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300029939I_Bog_E3 coassemblyEnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029945I_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029953II_Bog_E3 coassemblyEnvironmentalOpen in IMG/M
3300029954I_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029955II_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029985Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_1EnvironmentalOpen in IMG/M
3300029992Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_3EnvironmentalOpen in IMG/M
3300030004Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_1EnvironmentalOpen in IMG/M
3300030020II_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300030044Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2EnvironmentalOpen in IMG/M
3300030045Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_3EnvironmentalOpen in IMG/M
3300030049Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_1EnvironmentalOpen in IMG/M
3300030051Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_2EnvironmentalOpen in IMG/M
3300030058Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1EnvironmentalOpen in IMG/M
3300030507Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2EnvironmentalOpen in IMG/M
3300030508Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_2EnvironmentalOpen in IMG/M
3300030518Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2EnvironmentalOpen in IMG/M
3300030646Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_2EnvironmentalOpen in IMG/M
3300030687Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1EnvironmentalOpen in IMG/M
3300031259Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_3EnvironmentalOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300032562Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18017EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M
3300033743Peat soil microbial communities from Stordalen Mire, Sweden - 714 E1 5-9EnvironmentalOpen in IMG/M
3300033823Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34EnvironmentalOpen in IMG/M
3300033982Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fractionEnvironmentalOpen in IMG/M
3300034065Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Ga0073928_1045591913300006893Iron-Sulfur Acid SpringQPKDYDRAVLLLADLHDLAVRQEDETGFQLTMEELRKTHAAKESFLGRLTKAKL*
Ga0116109_110944113300009627PeatlandPKDYERAVILLVDLYDLAVRHGDETRFQLTMEELRQTHAGKGAFLRRLAKANL*
Ga0074045_1014351813300010341Bog Forest SoilVEAYIQKRQPKDYERAVILLVDLYDLAVRQGDETGFQLTMEELRKTHAAKGAFLRRLSKANL*
Ga0074044_1115183223300010343Bog Forest SoilDLAVRQGDETGFQLTMEELRKTHAAKGAFLRRLSKANL*
Ga0181527_129237213300014153BogVALLSNLRDLAVRQGGEDEFHLTMEDLRKTHSAKDSFLRRLAKAKL*
Ga0181518_1052016823300014156BogDLAVRQGGEDEFHMTMEDLRKTHSAKDSFLRRLAKAKL*
Ga0181534_1078863813300014168BogLHELAVRQEDEPGFQLTMEELRKTHAAKGAFLRRLAEAKL*
Ga0182014_1001690873300014491BogYEQAVILLVDLHDLAVRQRDETGFQLTVEELRKTHAAKSAFLRRLAKANL*
Ga0182013_1007872923300014492BogVRQGDETGFQLTMEELRQTHAAKGAFLRRLAKANL*
Ga0182013_1034273423300014492BogLFRSLFRGRENIQQRQPKDYERAVILLMDLHDLAVRQEDETGFQLTMEELRKTHAAKGAFLRRLAKANL*
Ga0182016_1006504013300014493BogAVILLVDLYDLAVRQGDETVFQLTMEELRQTHAAKGAFLRRLAKANL*
Ga0182011_1032557013300014496FenLLTDLRDLAVRRGRESVFLSALEKLRKTHAAKDTFLRKLTKAKL*
Ga0182012_1072300413300014499BogIGQRQPKDYEKAVILLVNLHDLALRQGDETGFQLTVEELRKTHAARSAFLRRLAKANL*
Ga0182024_1152742123300014501PermafrostKQVEANIEKRQPKDYDRAVVLLLDLHDLAVRQEDETGFQLTMEELRKTHAAKGAFLRRLAKANL*
Ga0182021_1090005923300014502FenAVALLSNLRDLAVRQGGEDEFHLTMEDLRKTHSAKDSFLRRPVKAKL*
Ga0181516_1018172113300014655BogPNDYDRAVILLTDLHDLAVRQGDETGFQLTMEELRITHAAKGSFLRRLTKAKL*
Ga0181516_1062733323300014655BogLHDLAVRQGGEDEFLLTMEELRKTHAAKDSLLRRLTKAKL*
Ga0181522_1014366613300014657BogDLHDLAVRQRDEMGFQLTVEELRKTHAAKSAFLRRLAKANL*
Ga0181519_1017682233300014658BogVRKGDETGFQLTMEELRETHAAKDSFLRRLTKAKL*
Ga0181519_1023756513300014658BogNDYDRAVILLTDLHDLAVRQGGEDEFLLTLEELHKAHAAKDSFLRRLTKAKL*
Ga0182030_1119543613300014838BogHDLAVRQGDETGFQLTMEELRKTHAAKDSFLRRLTKAKL*
Ga0187883_1053142323300018037PeatlandVILLTDLHDLAVRQGGEDEFLLTMEELRKTHAAKDSFLRRLTKAKL
Ga0187859_1004154463300018047PeatlandLHDLAVRQGDETGFQLTIEELRKTHAAKDSFLRRLTKAKL
Ga0224527_1000788173300022877SoilLAVRQGDETGFQLTMEELRKTHAAKDSFLRRLTKAKL
(restricted) Ga0224519_105148213300023060SoilKRQPNDYDRAVILLTDLHDLAVRQGDETGFQLTMEELRKTHAAKDSFLRRLTKANL
Ga0224559_100110523300023091SoilVDAYIQKRQPNDYDRAVMLLKNLHDLAVRQGGEDEFHLIMDDLRKTHAAKESFLRRLEKAKL
Ga0224535_111784713300023258SoilVMLLKNLHDLAVRQGGEDEFHLIMDDLRKTHAAKESFLRRLEKAKL
Ga0208936_100465153300025404PeatlandDLAVRQGGEDEFLLTMEELRKTHAAKDSFLRRLTKAKL
Ga0208717_105689223300025574Arctic Peat SoilVVLLTDLHDLAIHQKSESEFQEALEMLRKTHAAKETFLRRLTKAKL
Ga0255351_109232723300026456SoilHDLAVRQGGEDEFHLTMEDLRKTHAAKESFLRRLAKAKL
Ga0255350_102812323300026502SoilEVDAYIQKRQPNDYDRAVMLLSNLHDLAVRQGGEDEFHLTMDDLRKTHAAKESFLRRLAKAKL
Ga0209905_102369133300027634Thawing PermafrostQQRQPKDYERAVILLMDLHDLAVRQEDEFGFQFTMEELRKTHAAKGAFLRRLAKANL
Ga0255353_105339513300028070SoilAVILLADLHDLAVRQGDETGFQLTMEELRKTHAAKDSFLRRLTKANL
Ga0255353_108029113300028070SoilLLTDLHDLAVRQGGEDEFLLTMEELRKTHAAKDSFLHRLTKAKL
Ga0302149_107196913300028552BogNDYDRAVMLLSNLHDLAVRQGGEDEFHLTMDDLRKTHAAKESFLRRLANAKL
Ga0302144_1022485113300028560BogLLVDLHDLAVRQGDETGFQLTMEELCQTHAAKGAFLRRLAKANL
Ga0302147_1016995813300028566BogYDLAVRQGDETGFQLTMEELRQTHAAKGAFLRRLAKANL
Ga0302153_1004030223300028574BogLYDLAVRQGDETGFQLTMEELRQTHAAKGAFLRRLAKANL
Ga0302267_1026609323300028745BogLLSNLHDLAVRQGGEDEFHLTMDDLRKTHAAKESFLRRLANAKL
Ga0302202_1019185713300028762BogLLTDLRDLAVRQGGEDEFLLTMEELRKTHAAKDSFLRRLTKAKL
Ga0302266_1015429623300028779BogVDLYDLAVRQGDETGFQLTMEELRQTHAAKGAFLRRLAKANL
Ga0302223_1027956723300028781PalsaPKDYERAVILLVDLYDLAVRQGDETGFQLTMQEIRKTHAAKGAFLRRLAKANL
Ga0302279_1033740923300028783BogAVMLLSNLHDLAVRQGGEDEFHLTMDDLRKTHAAKESFLRRLANAKL
Ga0302201_1008815923300028785BogLHDLAVRQEDEFGFQFTMEELRKTHAAKGAFLRRLAKANL
Ga0302201_1017758023300028785BogVILLTDLHELAVRQLDETGFQLTMEELRKTHAAKDTFLRRLTK
Ga0302201_1027801613300028785BogKREKEVWKQVDAYIQKRQPNDYDRAVMLLSNLHDLAVRQGGEDEFHLTMDDLRKTHAAKESFLRRLANAKL
Ga0302189_1004682033300028788BogPNDYDRAVMLLSNLHDLAVRQGGEDEFHLTMDDLRKTHAAKESFLRRLANAKL
Ga0302226_1027934113300028801PalsaILLADLHDLAVRQGDETGFQLTMEELRQTHAAKGAFLRRLAKANL
Ga0302157_1037759223300028813BogRAVILLTDLHDLAVRQGGEDEFLLAMEELRKTHAAKDSFLRRLTRAKL
Ga0302146_1022235613300028867BogSLFVKGDETGFQLTMEELRQTHAAKGAFLRRLAKANL
Ga0302197_1006760513300028873BogVDLHDLAVRHRDETGFQLTVEELRKTHAAKSAFLRRLAKANL
Ga0302197_1018376123300028873BogVWKQVDAYIQKRQPNDYDRAVMLLSNLHDLAVRQGGEDEFHLTMEDLRRTHSAKDSFLRRLAKAKL
Ga0302197_1020664623300028873BogAALLLADLHDLAVRQGDETGFQLTMEELRKRHLAKETFLRRLTQAKL
Ga0302155_1012686213300028874BogERAVNLLVDLHELAVRQGDETGFQLRMEELRKTHAAKSAFLRWLAKANL
Ga0311329_1069154813300029907BogQAVILLVDLHDLAVRQRDETGFQLTVEELRKTHAAKSAFLRRLAKANL
Ga0311341_10005169153300029908BogDLYDLAVRQGDETGFQLTMEELRQTHAAKGAFLRRLAKANL
Ga0311341_1002891583300029908BogNDYDRAVILLTDLHDLAVRQGGEDEFLLAMEELRKTHAAKDSFLRRLTRAKL
Ga0311341_1050304823300029908BogRAVILLTDLHDLAVRQGGEDEFLLTMEELRKTHAAKDSFLRRLTKAKL
Ga0311369_1043897213300029910PalsaVILLMDLHDLAVRQGDETGFQLRMEELRKTHAAKSTFLGRLAKANL
Ga0311361_1112897423300029911BogRGRENIQQRQPKDYERAVILLMDLHDLAVRQEDETGFQLTMEELRKTHAAKGAFLRRLAKANL
Ga0311361_1115789523300029911BogVMLLSNLHDLAVRQGGEDEFHLTMDDLRKTHAAKESFLRRLANAKL
Ga0311362_1007630913300029913BogAVRQGGEDEFLLAMEELRKTHAAKDSFLRRLTRAKL
Ga0311362_1045418023300029913BogRTCTRQFSAVPIQKRQPKDYERAVILLVDLYDLAVRQGDETGFQLTMEELRQTHAAKGAFLRRLAKANL
Ga0302148_110516523300029916BogAYIQKRQPNDYDRAVMLLSNLHDLAVRQGGEDEFHLTMDDLRKTHAAKESFLRRLANAKL
Ga0311326_1043662623300029917BogDRAALLLADLHDLAVRQGDETGFQLTMEELRKRHLAKETFLRRLTQAKL
Ga0302143_106909613300029918BogLLVNLHDLALRQGDETGFQLTVEELRKTHAARSAFLRRLAKANL
Ga0302141_101076833300029919BogHDLAVRQGDETGFQLTMEELRQTHAAKGAFLRRLAKANL
Ga0302141_102950113300029919BogDLHDLAIRQEDETGFQLTMEELRKTHAAKGAFLRRLAKANL
Ga0311363_1111205623300029922FenRAVMLLSNLHDLAVRQGGEDEFHLTMDDLRKTHAAKESFLRRLANAKL
Ga0311363_1124816923300029922FenREKEVWKQVDAYIQKRQPNDYDRAVMLLSNLHDLAVRQGGEDEFHLTMEDLRRTHSAKDSFLRRLAKAKL
Ga0311328_1077221323300029939BogILLADLHDLAVRQGDETGFQLTMEELRKTHAAKDSFLRRLTKAKL
Ga0311340_1144119013300029943PalsaDMHDLAVRQGDETGFQLRMEELRKTHAAKSTFLGRLAKANL
Ga0311330_1040704213300029945BogERAVILLVDLHDLAVRQGDETGFQLTMEELCQTHAAKGAFLRRLAKANL
Ga0311343_1019435223300029953BogVILLTDLHELAVRQLDETGFQLTMEELRKTHAAKDTFLRRLTKAKL
Ga0311343_1117769013300029953BogYIQKRQPNDYDRAVMLLSNLHDLAVRQGGEDEFHLTMEDLRRTHSAKDSFLRRLAKAKL
Ga0311331_1029456113300029954BogKREKEVWKQVDAYIQKRQPNDYDRAVMLLSNLHDLAVRQGGEDEFHLTMEDLRRTHSAKDSFLRRLAKAKL
Ga0311342_1094780013300029955BogVRQGGEDEFLLTMEELRKTHAAKDSFLRRLTKAKL
Ga0302280_102598823300029985FenIQKRQPKDYERAVILLVDLYDLAVRQGDETGFQLTMEELRQTHAAKGAFLRRLAKANL
Ga0302276_1033225213300029992BogTDLHELAVRQLDETGFQLTMEELRKTHAAKDTFLRRLTKAKL
Ga0302186_1006315813300030004BogDLAVRQGDETGFQLTMEELRQTHAAKGAFLRRLAKANL
Ga0311344_1037066613300030020BogVYEQAVILLVDLHDLAVRQRDETGFQLTVEELRKTHAAKSAFLRRLAKANL
Ga0302281_1009044323300030044FenVILLTDLHDLAVRQGDETGFQLTMEELRKTHAAKDSFLRRLTKAKL
Ga0302281_1011945223300030044FenKEVWKQVDAYIQKRQPNDYDRAVMLLSNLHDLAVRQGGEDEFHLTMEDLRRTHSAKDSFLRRLAKAKL
Ga0302281_1027044313300030044FenLLTDLHDLAVRQGDETGFQWTMEELRKTHAAKNSFLRRLTKAKL
Ga0302282_118142623300030045FenILLIDLHDLSVRQENETGFQLTMEELRKTHAAKGAFLRRLAKANL
Ga0302191_1006311143300030049BogDLHDLAVRHRDETGFQLTVEELRKTHAAKSAFLRRLAKANL
Ga0302195_1010287523300030051BogVILLVDLYDLAVRQGDETGFQLTMEELRQTHAAKGAFLRRLAKANL
Ga0302179_1037326523300030058PalsaDLAVRQGDETAFQLTMEELRKTHAAKSAFLRRLAKANL
Ga0302192_1011127823300030507BogLAVRQGGEDEFHLTMDDLRKTHAAKESFLRRLANAKL
Ga0302185_1009590123300030508BogVRQGDETGFQLTMEELRQTHAAKGAFLRRLAKANL
Ga0302185_1010908613300030508BogDRAVMLLSNLHDLAVRQGGEDEFHLTMDDLRKTHAAKESFLRRLANAKL
Ga0302185_1020193613300030508BogLTDLHDLAVRQGGEDEFLLTMEELRKTHAAKDSFLRRLTKAKL
Ga0302275_1000673713300030518BogLIDLHDLSVRQENETGFQLTMEELRKTHAAKGAFLRRLAKANL
Ga0302275_1047720323300030518BogIQKRQPNDYDRAVMLLSNLHDLAVRQGGEDEFHLTMDDLRKTHAAKESFLRRLANAKL
Ga0302316_1005618923300030646PalsaILLVDLYDLAVRQGDETGFQLTMEELRQTHAAKGAFLRRLAKANL
Ga0302309_1037844413300030687PalsaQPKDYDRAIILLTDLHDLAVRQGDETSFQLTMEELRKTHAAKGAFLRRLTQAKL
Ga0302187_1039729813300031259BogLHDLAVRQGDETGFQWTMEELRKTHAAKNSFLRRLTKAKL
Ga0302187_1051757513300031259BogILLMDLHDLAVRQEDEFGFQFTMEELRKTHAAKGAFLRRLAKANL
Ga0302320_1077091413300031524BogPNDYDRAVMLLSNLHDLAVRQGGEDEFHLTMDDLRKTHAAKESFLRRLAKAKL
Ga0316226_136045523300032562FreshwaterRQPKDYERAVILLMDLHDLAVSQEDETGFQLTMEELRKTHAAKGAFLRRLAKANL
Ga0326728_1015743033300033402Peat SoilYDRAVILLTDLRDLAVRRGRESVFQSALAKLRKTHAAKDTFLRRLTKAKL
Ga0334844_122057_339_4763300033743SoilMLLKDLHDLAVRQGGEDEFHLIMDDLRKTHAAKESFLRRLAKAKL
Ga0334837_022069_2055_22613300033823SoilFRSLFRGRENIQQRQPKDYERAVILLMDLHDLAVRQEDETGFQLTMEELRKTHAAKGAFLRRLAKANL
Ga0371487_0329263_2_1453300033982Peat SoilAVILLTDLRDLAVRRGHESVFQSALAKLRKTHAAKDTFLRRLTKAKL
Ga0334827_085683_924_10673300034065SoilAVILLTDLRDLAVRQGGEDEFLLTMEELRKTHAAKDSFLRRLTKAKL


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.