Metagenome / Metatranscriptome Family F095016

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095016
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	51 residues
Representative Sequence	VPAIYTLAIFEIASADWAVLGACLALAVAVMLFIFYIQPDASDLAPHRSKLD
Number of Associated Samples	86
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.94 %
% of genes near scaffold ends (potentially truncated)	92.38 %
% of genes from short scaffolds (< 2000 bps)	82.86 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (39.048 % of family members)
Environment Ontology (ENVO)	Unclassified (41.905 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.762 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.75% β-sheet: 0.00% Coil/Unstructured: 51.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF03918	CcmH	80.00
PF16327	CcmF_C	14.29
PF03100	CcmE	1.90
PF01578	Cytochrom_C_asm	1.90

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG3088	Cytochrome c-type biogenesis protein CcmH/NrfF	Posttranslational modification, protein turnover, chaperones [O]	80.00
COG2332	Cytochrome c biogenesis protein CcmE	Posttranslational modification, protein turnover, chaperones [O]	1.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.33 %
Unclassified	root	N/A	6.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.33 %
Unclassified	root	N/A	6.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.33 %
Unclassified	root	N/A	6.67 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	86.67 %
Unclassified	root	N/A	6.67 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	26.67 %
Unclassified	root	N/A	6.67 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	25.71 %
Unclassified	root	N/A	6.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	25.71 %
Unclassified	root	N/A	6.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.90 %

Name	Rank	Taxonomy	Distribution
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	7.62 %
Unclassified	root	N/A	6.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	6.67 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_109499374	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1047	Open in IMG/M
3300001593\|JGI12635J15846_10063754	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2751	Open in IMG/M
3300002906\|JGI25614J43888_10024743	All Organisms → cellular organisms → Bacteria → Acidobacteria	1906	Open in IMG/M
3300002906\|JGI25614J43888_10058383	All Organisms → cellular organisms → Bacteria → Acidobacteria	1134	Open in IMG/M
3300003219\|JGI26341J46601_10111468	All Organisms → cellular organisms → Bacteria → Acidobacteria	789	Open in IMG/M
3300005176\|Ga0066679_10141723	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1498	Open in IMG/M
3300005176\|Ga0066679_10642183	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300005187\|Ga0066675_10569573	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	850	Open in IMG/M
3300005332\|Ga0066388_107247785	All Organisms → cellular organisms → Bacteria → Acidobacteria	557	Open in IMG/M
3300005447\|Ga0066689_10094899	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1700	Open in IMG/M
3300005537\|Ga0070730_10226074	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1242	Open in IMG/M
3300005538\|Ga0070731_10933910	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300005764\|Ga0066903_100218450	All Organisms → cellular organisms → Bacteria → Acidobacteria	2885	Open in IMG/M
3300005764\|Ga0066903_105978543	All Organisms → cellular organisms → Bacteria → Acidobacteria	638	Open in IMG/M
3300006034\|Ga0066656_10174255	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300006046\|Ga0066652_102007125	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300006047\|Ga0075024_100089655	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1336	Open in IMG/M
3300006914\|Ga0075436_100539466	All Organisms → cellular organisms → Bacteria → Acidobacteria	856	Open in IMG/M
3300007076\|Ga0075435_100048519	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3412	Open in IMG/M
3300007255\|Ga0099791_10272817	All Organisms → cellular organisms → Bacteria → Acidobacteria	804	Open in IMG/M
3300009012\|Ga0066710_100595291	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1677	Open in IMG/M
3300009038\|Ga0099829_11800407	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300009089\|Ga0099828_10260235	All Organisms → cellular organisms → Bacteria → Acidobacteria	1557	Open in IMG/M
3300009090\|Ga0099827_11983339	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300010336\|Ga0134071_10493380	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300010361\|Ga0126378_12862920	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300010362\|Ga0126377_12107346	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300010398\|Ga0126383_13607966	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300011120\|Ga0150983_11199581	All Organisms → cellular organisms → Bacteria → Acidobacteria	866	Open in IMG/M
3300011269\|Ga0137392_11437153	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300011270\|Ga0137391_10778767	All Organisms → cellular organisms → Bacteria → Acidobacteria	790	Open in IMG/M
3300012096\|Ga0137389_10251003	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1487	Open in IMG/M
3300012189\|Ga0137388_11900458	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300012202\|Ga0137363_10027284	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3905	Open in IMG/M
3300012202\|Ga0137363_10763347	All Organisms → cellular organisms → Bacteria → Acidobacteria	820	Open in IMG/M
3300012202\|Ga0137363_11403893	All Organisms → cellular organisms → Bacteria → Acidobacteria	588	Open in IMG/M
3300012203\|Ga0137399_10084389	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2420	Open in IMG/M
3300012203\|Ga0137399_10166841	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1769	Open in IMG/M
3300012205\|Ga0137362_11386825	All Organisms → cellular organisms → Bacteria → Acidobacteria	589	Open in IMG/M
3300012206\|Ga0137380_10631791	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	934	Open in IMG/M
3300012209\|Ga0137379_11538282	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300012211\|Ga0137377_11554033	All Organisms → cellular organisms → Bacteria → Acidobacteria	587	Open in IMG/M
3300012285\|Ga0137370_10202985	All Organisms → cellular organisms → Bacteria	1163	Open in IMG/M
3300012349\|Ga0137387_10963132	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300012361\|Ga0137360_10935918	All Organisms → cellular organisms → Bacteria → Acidobacteria	747	Open in IMG/M
3300012362\|Ga0137361_11380625	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300012363\|Ga0137390_10549310	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1126	Open in IMG/M
3300012363\|Ga0137390_10630086	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1038	Open in IMG/M
3300012363\|Ga0137390_10882712	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	849	Open in IMG/M
3300012363\|Ga0137390_11673158	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300012385\|Ga0134023_1068971	All Organisms → cellular organisms → Bacteria → Acidobacteria	622	Open in IMG/M
3300012404\|Ga0134024_1018471	All Organisms → cellular organisms → Bacteria → Acidobacteria	880	Open in IMG/M
3300012405\|Ga0134041_1192359	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300012683\|Ga0137398_10333131	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1025	Open in IMG/M
3300012925\|Ga0137419_11617773	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300012925\|Ga0137419_11864268	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300012927\|Ga0137416_10521127	All Organisms → cellular organisms → Bacteria → Acidobacteria	1026	Open in IMG/M
3300012927\|Ga0137416_11710609	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
3300012929\|Ga0137404_10168171	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1837	Open in IMG/M
3300012975\|Ga0134110_10093509	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1211	Open in IMG/M
3300015054\|Ga0137420_1087266	All Organisms → cellular organisms → Bacteria → Acidobacteria	648	Open in IMG/M
3300015264\|Ga0137403_10276005	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1583	Open in IMG/M
3300017823\|Ga0187818_10016835	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3122	Open in IMG/M
3300017943\|Ga0187819_10850666	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300018468\|Ga0066662_12732481	All Organisms → cellular organisms → Bacteria → Acidobacteria	523	Open in IMG/M
3300019789\|Ga0137408_1133139	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300019789\|Ga0137408_1450597	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2651	Open in IMG/M
3300020170\|Ga0179594_10015015	All Organisms → cellular organisms → Bacteria	2247	Open in IMG/M
3300020581\|Ga0210399_10130080	All Organisms → cellular organisms → Bacteria → Acidobacteria	2072	Open in IMG/M
3300020581\|Ga0210399_10551192	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300020582\|Ga0210395_11080540	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300021046\|Ga0215015_10464005	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1114	Open in IMG/M
3300021046\|Ga0215015_10763486	All Organisms → cellular organisms → Bacteria → Acidobacteria	667	Open in IMG/M
3300021168\|Ga0210406_10941920	All Organisms → cellular organisms → Bacteria → Acidobacteria	647	Open in IMG/M
3300021178\|Ga0210408_10052489	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3187	Open in IMG/M
3300021474\|Ga0210390_11160354	All Organisms → cellular organisms → Bacteria → Acidobacteria	625	Open in IMG/M
3300021477\|Ga0210398_10812513	All Organisms → cellular organisms → Bacteria → Acidobacteria	752	Open in IMG/M
3300021477\|Ga0210398_11259977	All Organisms → cellular organisms → Bacteria → Acidobacteria	582	Open in IMG/M
3300022724\|Ga0242665_10171245	All Organisms → cellular organisms → Bacteria → Acidobacteria	699	Open in IMG/M
3300025915\|Ga0207693_10949981	All Organisms → cellular organisms → Bacteria → Acidobacteria	658	Open in IMG/M
3300025916\|Ga0207663_11295021	All Organisms → cellular organisms → Bacteria → Acidobacteria	587	Open in IMG/M
3300026304\|Ga0209240_1113173	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	945	Open in IMG/M
3300026538\|Ga0209056_10271749	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1191	Open in IMG/M
3300026540\|Ga0209376_1033391	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3183	Open in IMG/M
3300026557\|Ga0179587_10665847	All Organisms → cellular organisms → Bacteria → Acidobacteria	685	Open in IMG/M
3300027297\|Ga0208241_1081796	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300027846\|Ga0209180_10763423	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300027875\|Ga0209283_10800096	All Organisms → cellular organisms → Bacteria → Acidobacteria	580	Open in IMG/M
3300028381\|Ga0268264_10999815	All Organisms → cellular organisms → Bacteria → Acidobacteria	843	Open in IMG/M
3300030693\|Ga0302313_10267904	All Organisms → cellular organisms → Bacteria → Acidobacteria	683	Open in IMG/M
3300030940\|Ga0265740_1005972	All Organisms → cellular organisms → Bacteria → Acidobacteria	1000	Open in IMG/M
3300031753\|Ga0307477_10730558	All Organisms → cellular organisms → Bacteria → Acidobacteria	661	Open in IMG/M
3300031754\|Ga0307475_11153456	All Organisms → cellular organisms → Bacteria → Acidobacteria	605	Open in IMG/M
3300031947\|Ga0310909_11516663	All Organisms → cellular organisms → Bacteria → Acidobacteria	533	Open in IMG/M
3300031962\|Ga0307479_12033451	All Organisms → cellular organisms → Bacteria → Acidobacteria	523	Open in IMG/M
3300032174\|Ga0307470_11375534	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300032205\|Ga0307472_100368678	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1187	Open in IMG/M
3300032515\|Ga0348332_14286476	All Organisms → cellular organisms → Bacteria → Acidobacteria	646	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.14%
Host-Associated	Host-Associated	2.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.33%
Aquatic	Environmental → Aquatic	3.81%
Plants	Host-Associated → Plants	2.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.43%
Freshwater	Environmental → Aquatic → Freshwater	2.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.90%
Sediment	Environmental → Aquatic → Sediment	0.95%
Peat	Environmental → Terrestrial → Peat	0.95%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.86%
Loam	Environmental → Terrestrial → Soil → Loam	8.57%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.95%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.95%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	51.43%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.10%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.86%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.95%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	39.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.57%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.57%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.86%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.90%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.95%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.95%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.95%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012385	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012404	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012405	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027297	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030693	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2	Environmental	Open in IMG/M
3300030940	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1094993743	3300000955	Soil	LPVLATLQITSSDWAVFGACVALAAATVLVIFYIRPDASDLAPHRSKLDQL
JGI12635J15846_100637541	3300001593	Forest Soil	MVPALYTVAIFQIASADWAVLGACMALAVATMLFIFYIQPDASDLAPHRTKLDQ
JGI25614J43888_100247433	3300002906	Grasslands Soil	MAGAYLNLAAVLISSADGAVLGLCLALAVATLLFIFYIQPDASDLAPRRSKLDQLM
JGI25614J43888_100583833	3300002906	Grasslands Soil	MAGAYLNLAAVLISSADGAVLGACLALAVATLLFIFYIQPDASDLAPRRSKLDQLM
JGI26341J46601_101114683	3300003219	Bog Forest Soil	VPLPTLAASLVASTDWLALGACLALAVATLVFLFFIQADASDLAPHRTSLDQ
Ga0066679_101417233	3300005176	Soil	MVLALLAFANFEIASADWAVLGACLALAVAVLLFIFYIQPDASDLAPHRTKLDQLL
Ga0066679_106421833	3300005176	Soil	MAVVFLNLVAAFAISSADGAVLGACLALAVSTLLFIFYIQPDASDLAPHRSKLDQLME
Ga0066675_105695733	3300005187	Soil	MVPALYPLAIFLIASGDWAVLGACLALAIATVLFIFYIQPDASDLAPHRTRLDQ
Ga0066388_1072477851	3300005332	Tropical Forest Soil	LSGFLIAAAQITSSDWAVLGACAALAVATGLFIFYIRPDASDLAP
Ga0066689_100948993	3300005447	Soil	MVLPVYTLAIFLIASADWAVLGACLALAVATLLFIFYIQPDASDLAPHRTKLDQLL
Ga0070730_102260741	3300005537	Surface Soil	LSAALAAALLVDSLAASPQVTPADWGVLGACFALAAATGLFIFYIQPDASDLAPHRSRLDQLLERR
Ga0070731_109339102	3300005538	Surface Soil	LSLALFANVLFVLTSSDGAVLGACLALAMATVLFIFYIQPDASDLAPHRTKLD
Ga0066903_1002184501	3300005764	Tropical Forest Soil	LVQLLLALFSTEIRPNDLAVLGACLALAAATGLFVFYIRPDASDLAPHRSKLDQL
Ga0066903_1059785432	3300005764	Tropical Forest Soil	LSGLELAAAQITSSEWAVLGACAALAAATGLFIFHIRPDASDLAPHRS
Ga0066656_101742551	3300006034	Soil	MVLPVYTLAIFLIASADWAVLGACLALAVATLLFIFYIQPDASDLAPHRTKLDQ
Ga0066652_1020071251	3300006046	Soil	VPVLFSVASFEIASGDWAVLGACLALAAATLLFIFYIQPDAS
Ga0075024_1000896551	3300006047	Watersheds	MATLLNLSGVIVLGSSDWAVLGACLALAIVTLLFIFYIQPDASDLAPHRSKL
Ga0075436_1005394661	3300006914	Populus Rhizosphere	LFCLLLATSQIASSDWAVLGACFALAAATGLFIFYIRPDASDLAPHRSKLD
Ga0075435_1000485191	3300007076	Populus Rhizosphere	LLVSLLAAAQISSADWAVLGACFALAAATGLFIFYIRPDASDLAPHRSKLDQLL
Ga0099791_102728171	3300007255	Vadose Zone Soil	MVPTLCAIAAVEIASGDWVILGACLALAVAVGLFIFYIQPDASDLA
Ga0066710_1005952911	3300009012	Grasslands Soil	VKLLPALVAFLITSADWAVVGACLTLAISTILFIFYIQPDASDLAPRRTKLDQL
Ga0099829_118004072	3300009038	Vadose Zone Soil	VPAIYTLAIFEIASADWAVLGACLALAVAVMLFIFYIQPDASDLAPH
Ga0099828_102602353	3300009089	Vadose Zone Soil	VPAIYTLAIFEIASADWAILGACLALAVATMLFIFYLQPDASDLAPHRSKLDQLLER
Ga0099827_119833392	3300009090	Vadose Zone Soil	VKLLPALVAFLITSADWAVVGACLTLAISTILFIFYIQPDASDLAPRRTKLDQ
Ga0134071_104933801	3300010336	Grasslands Soil	MAPTLYILATLEIASGDLAILGACVALAIAVGLFIFYIQPDASDLAPH
Ga0126378_128629202	3300010361	Tropical Forest Soil	MEAIPLVAILLNDSGNWAVLGACLMLAVAIALFIFYIQPDASDLAPHRTRLDQLLER
Ga0126377_121073461	3300010362	Tropical Forest Soil	MAPAALAAQIPSGDWAVLGACFALAAATFLFIFYIRPDASDLAPHRSALDQLL
Ga0126383_136079661	3300010398	Tropical Forest Soil	LVGFLIAAAQIASSDWAVLGACVALAAATGLFIFYIRPDPSDLAPHRS
Ga0150983_111995811	3300011120	Forest Soil	LILTVGTPIAAFLITSVDWAVLGACLALAFATGLFIFYIQPDASDLAPHRSKLDQLLE
Ga0137392_114371532	3300011269	Vadose Zone Soil	MVAAFYTLAIFVINSADWAMLGACLALAAATVLFIFYIQPDASDLAP
Ga0137391_107787671	3300011270	Vadose Zone Soil	MVAALYTFAIFVINSADWAVLGACLALAAATVLFIFYIQPDASDLA
Ga0137389_102510033	3300012096	Vadose Zone Soil	MVFALYTAALFLIASADWAVLGACLALAVATMLLIFYIQPDASDLA
Ga0137388_119004581	3300012189	Vadose Zone Soil	MVPAINTLAIFEIASADWAVLGACLALAVAVMLFIFYIQPDASDLAPHRSKLDQ
Ga0137363_100272845	3300012202	Vadose Zone Soil	MATAFSMLAALEIGSRDWAVLGACVALAAAVLLFIFYIQPDASDLAPHRTKLDQLL
Ga0137363_107633471	3300012202	Vadose Zone Soil	MVAALYTLAIFLIASGDWAVLGACLALAVATMLFVVYIQRDASDLAPHRTKLD
Ga0137363_114038932	3300012202	Vadose Zone Soil	MVLALYTLAIFLIASADWAVLGACLALAVATLLFIFYIQPDASDLAPHRTRLDQLL
Ga0137399_100843891	3300012203	Vadose Zone Soil	LAAAFLISSADSAVLGACLALAIATLLFIFYIQPDASDLAPHRSKLDHLME
Ga0137399_101668411	3300012203	Vadose Zone Soil	LVAPFLVFAIFVIASEDWAVLGACLALAVAAMLFIFYIQPDASDL
Ga0137362_113868252	3300012205	Vadose Zone Soil	VPAIYTLAIFEIASADWAVLGACLALAVAVMLFIFYIQPDASDLAPHR
Ga0137380_106317913	3300012206	Vadose Zone Soil	MVPALYTLAIFLIASGDWAVLGACLALAVATLLFIFYIQPDASDLAP
Ga0137379_115382822	3300012209	Vadose Zone Soil	MMPALYTSALFVIGSGDWAVLGACLALAVAVMLFVFYIQPDASDL
Ga0137377_115540331	3300012211	Vadose Zone Soil	MMVPALYSLAIFLIASGDWAVLGACLALAIATMLFIFYIQPDASDLAPH
Ga0137370_102029851	3300012285	Vadose Zone Soil	VTVLLTFASFEIASADWAVLGACLALAAATLLFIFYIQPDASDLAPHRTRLDQL
Ga0137387_109631322	3300012349	Vadose Zone Soil	MAIFLIASADWAVLGACLALAVAVVLFIFYIQPDASDLAPHRTK
Ga0137360_109359182	3300012361	Vadose Zone Soil	MVPTLYTLATLEIGSGDWAILGACLALAVAVGLFIFYIQPDASDLAPHRTKLDQLL
Ga0137361_113806251	3300012362	Vadose Zone Soil	MAVVFLNLVAAFAISSADGAVLGACLALAVSTLLFIFYIQPDASDLAPHRSKL
Ga0137390_105493103	3300012363	Vadose Zone Soil	MVPALYSLSIFLIASGDWAVLGACLALAVATMLFIFYIQPDASDLAP
Ga0137390_106300863	3300012363	Vadose Zone Soil	VPALYTRANFEVASADWAVLVACLALAVATMLFIFYIQPDASDLAPHR
Ga0137390_108827121	3300012363	Vadose Zone Soil	VPAIYTLAIFEIASADWAVLGACLALAVAVMLFIFYIQPDASDLAP
Ga0137390_116731582	3300012363	Vadose Zone Soil	MVPAIYALAIFEIASADWAVLGACLALAVAVMLFIFYIQPDASDLAP
Ga0134023_10689711	3300012385	Grasslands Soil	MMVPALYPLAIFLIASGDWAVLGACLALAIATVLFIFYIQPDASDLAPHRTR
Ga0134024_10184713	3300012404	Grasslands Soil	MMVPALYPLAIFLIASGDWAVLGACLALAIATVLFIFYIQPDASDLAPHRTRLDQLLERR
Ga0134041_11923591	3300012405	Grasslands Soil	MMVPALYPLAIFLIASGDWAVLGACLALAIATMLFIFYIQPDASDLAPHR
Ga0137398_103331313	3300012683	Vadose Zone Soil	MTVVFLNLFAAFTISSADGAVLGACLALAVSTLLFIFYIQPDASDLAPHRSKLDHLMERR
Ga0137413_113291422	3300012924	Vadose Zone Soil	VAFFTLFAASVIASGDWVVLGACVALAVATMLFIFYIQPD
Ga0137419_114326311	3300012925	Vadose Zone Soil	MVLYTLLAVSVIASGDWAVLGACVALAVATMLFIFYIQPDASDL
Ga0137419_116177731	3300012925	Vadose Zone Soil	VVVAFLLFAMFVIASEDWAVLGACLALAVATMLFIFYIQPDASDLAPHRTKLDQL
Ga0137419_118642682	3300012925	Vadose Zone Soil	MLPALYSLSIFLIASGDWAVLGACLALAVATMLFVFYIQPDASDLAPHRTKLDQLL
Ga0137416_105211271	3300012927	Vadose Zone Soil	MVAALCSLAIYLIESADWAVLGACLALAVAVMLFIFYIQ
Ga0137416_117106092	3300012927	Vadose Zone Soil	MAGVFLNLAAAFLLSSADGAVLGACLALAIATLLFIFYIQPDASDLAPHRSKLDQL
Ga0137404_101681711	3300012929	Vadose Zone Soil	MLFAAGPDWAIYGACLGLAAAVFLFIFYIQPDASDLAPHRTKLDQLLE
Ga0134110_100935091	3300012975	Grasslands Soil	MMVPALYPLAIFLIASGDWAVLGACLALAIATVLFIFYIQPDAS
Ga0137420_10872661	3300015054	Vadose Zone Soil	VPALYTVAIFLIASGDWAVLGACLALAVATMLFIFYIQPDASDLAPHRTKLSCA
Ga0137403_102760053	3300015264	Vadose Zone Soil	MAATFSIFATFEIASGDWAILGACLALAVAVVLFLFHIQPDACDLA
Ga0187818_100168351	3300017823	Freshwater Sediment	VALFSTLAALPLASSDWAVLGACLALAVATLVFIFYIQPDASDLA
Ga0187819_108506662	3300017943	Freshwater Sediment	VALIFAQAALPLASSDWAVLGACLALAVATLVFIFYIQPDASDLAPHRT
Ga0066662_127324812	3300018468	Grasslands Soil	VPTLCAIAAVEIASGDWAILGACLALAVAVGLFIFYIQPDASDLAPHRTR
Ga0137408_11331393	3300019789	Vadose Zone Soil	MLPLFHSLTMIEAASGDWAIVGACLALALAVGLFIFYIQPDASDLAPHRTKRDQ
Ga0137408_14505971	3300019789	Vadose Zone Soil	MLPLFHSLTMIEAASGDWAIVGACLALALAVGLFIFYIQPDASDLAPHRTKLDQ
Ga0179594_100150153	3300020170	Vadose Zone Soil	MVPALLTFVTFETASADWAVLGACLALAVATLLFIFYIQPDASDLAPH
Ga0210399_101300801	3300020581	Soil	VPAISALAMVEIASADWAILGACLALAVAVILFIFYIQPDASDL
Ga0210399_105511923	3300020581	Soil	MLPLFLSLATIEIATRDGAILGACLALALAVGLFIFYIQPDASDLAPHRTKLDQ
Ga0210395_110805402	3300020582	Soil	VTLFNVFAVLEIGSADWAVLGACLALAVATVLFIFYIQPDASDLAPHRTKL
Ga0215015_104640053	3300021046	Soil	MAPPLAVSASFLLPSADWAVLGACLALAVATLLFIFYIHPDASDLASHRSKLD
Ga0215015_107634862	3300021046	Soil	MAPLLHLFAAVILASADWAVLGACLALAIATLLFIFYINPDASDLAPHRSKLDQLLE
Ga0210406_109419202	3300021168	Soil	MTCFFFFPLAATVITSADAAVLGACLALAISTLLFIFYIQPDASDLAPHRSKLDQLM
Ga0210408_100524894	3300021178	Soil	VTLFYMFAVLEIGSADWAVLGACLALAVATMLFIFYIQPDASDLAPHRTKL
Ga0210390_111603542	3300021474	Soil	LTVGTPIAAFLITSVDWAVLGACLALAFATGLFIFYIQPDASDLAPH
Ga0210398_108125132	3300021477	Soil	LTIVTTTTVFLIASADWAVIGACLALAIATGLFIFYIQPDASDLAPHRSKLDQLLER
Ga0210398_112599771	3300021477	Soil	LTATIATSIFLITSADWSVLGACMALALATGLFIFYIQPDASDLAPRRSKLDQLLER
Ga0242665_101712452	3300022724	Soil	VTLATILAIVSIASADWAVLGACVALAVATMLFIFYIQPDASDLA
Ga0207684_109108052	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VAIVLLFAVSVIASEDWVVLSACVALAVATMLFIFYIQPDASDL
Ga0207693_109499812	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LIAVPVAVFLKIGSADGAVLGACLALAAATLLFIFYIQPDASDLAPRRSKLDQLM
Ga0207663_112950211	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MALEIAVLMISSGDGAVLGACLALAAATILFIFYIQQDASDLAPHRSKLD
Ga0209240_11131733	3300026304	Grasslands Soil	MAGAYLNLAAVLISSADGAVLGACLALAVATLLFIFYIQPDASDLAPRRSKLDQ
Ga0209056_102717493	3300026538	Soil	MVPALYLLAIFLIASGDWAVLGACLALAVATMLFVFYIQPDASDLAPHRTKLDQL
Ga0209376_10333911	3300026540	Soil	MVPALYPLAIFLIASGDWAVLGACLALAIATMLFIFYIQPDASDLAPHRTRLDQLLERR
Ga0179587_106658472	3300026557	Vadose Zone Soil	MAVVFLNLVAASAISSTDGAVLGACLALAVATLLFIFYIQPDASDLAPHRSKLDQLM
Ga0208241_10817961	3300027297	Forest Soil	LTPVICIAVFLITSADWAVLGACLALALATGLFIFYIQPDASDLAPHRSKL
Ga0209180_107634231	3300027846	Vadose Zone Soil	VPAIYTLAIFEIASADWAVLGACLALAVAVMLFIFYIQPDASDLAPHRSKLD
Ga0209283_108000962	3300027875	Vadose Zone Soil	MAVVFLNLVAVFEISSADGAVLGACLALAVATLLFIFYIQPDASDLAPHRSKLDHL
Ga0268264_109998152	3300028381	Switchgrass Rhizosphere	LFCSLLATSQIVSSDWAVLGACFALAAATGLFIFYIRPDASDLAPHRS
Ga0302313_102679042	3300030693	Palsa	MAPVPIVFAAFLEITSTDGAILGACLALAVATTLFIFYIQPDASDLAPRRSQLDQLLER
Ga0265740_10059721	3300030940	Soil	LTFVTATTVFLIASADWAVIGACLALAIATGLFIFYIQPDASDLAPHRSKLDQLLER
Ga0307469_108079423	3300031720	Hardwood Forest Soil	VTFFLLFAVSVITSEDWVVLGACVALAVATMLFIFYIQPDASDL
Ga0307469_111430862	3300031720	Hardwood Forest Soil	LTGFTIIATYLITSADWVVLGACLALALATGLFIFYIQPDASDLA
Ga0307469_115471812	3300031720	Hardwood Forest Soil	VAFFTLFAASVIASGDWVVLGACAALAVATMLFIFYIQPDAS
Ga0307477_107305582	3300031753	Hardwood Forest Soil	MAPAIHSLAIFEIGSADWAVLGACLALAVAVMLFIFYIQPDASDLA
Ga0307475_111534562	3300031754	Hardwood Forest Soil	MVAALCSLAIFLIESADWAVLGACLALAVAVMLFIFYIQPD
Ga0310909_115166632	3300031947	Soil	VAGTPAFAAMLAASGDWAVLGACLMLAAAVTLFIFYIQPDASDLAPHRTRLDQLLE
Ga0307479_120334512	3300031962	Hardwood Forest Soil	MQTTLYTIAAIEIASGDWAILGACAALAIAALLFIFYIQPDASDLAPH
Ga0307470_102010871	3300032174	Hardwood Forest Soil	MAVVVLNLVAAFLISSADGAVLGACLALAVATLLFIFYIQPDASDLAPHRS
Ga0307470_113755342	3300032174	Hardwood Forest Soil	MPPLAFAAFLAVPAEWAIIGACLGLAAAVFLFIFYIQPDASDLAPHRTKLD
Ga0307472_1003686781	3300032205	Hardwood Forest Soil	MAMLLNLSGVIVLSSADWAVLGACLALAIVTLLFIFYIHPDASDLAPHRSKLDQL
Ga0348332_142864761	3300032515	Plant Litter	LTVGTPIAAFLITSADWAVLGACLALAFATGLFIFYIQPDASDLAPHRSKLD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095016

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences