NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F094958

Metagenome / Metatranscriptome Family F094958

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F094958
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 48 residues
Representative Sequence MNFGYLIVVASNNDIDYLKLAYALALSIKNTQKPGYDKVALVI
Number of Associated Samples 94
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 98.04 %
% of genes near scaffold ends (potentially truncated) 97.14 %
% of genes from short scaffolds (< 2000 bps) 86.67 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (96.190 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(17.143 % of family members)
Environment Ontology (ENVO) Unclassified
(46.667 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(58.095 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 21.13%    β-sheet: 0.00%    Coil/Unstructured: 78.87%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.46
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF07484Collar 0.95



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A96.19 %
All OrganismsrootAll Organisms3.81 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002835|B570J40625_100438858Not Available1252Open in IMG/M
3300003395|JGI25917J50250_1012326Not Available2093Open in IMG/M
3300003412|JGI25912J50252_10107289Not Available669Open in IMG/M
3300003429|JGI25914J50564_10072923Not Available881Open in IMG/M
3300003616|JGI25928J51866_1077226Not Available740Open in IMG/M
3300003616|JGI25928J51866_1115407Not Available563Open in IMG/M
3300004096|Ga0066177_10279305Not Available704Open in IMG/M
3300004097|Ga0055584_100096525Not Available2940Open in IMG/M
3300004124|Ga0066178_10026672Not Available1365Open in IMG/M
3300004124|Ga0066178_10229287Not Available537Open in IMG/M
3300005517|Ga0070374_10430398Not Available662Open in IMG/M
3300005662|Ga0078894_10587722Not Available993Open in IMG/M
3300007523|Ga0105052_10509217Not Available779Open in IMG/M
3300007539|Ga0099849_1310246Not Available568Open in IMG/M
3300008450|Ga0114880_1264731Not Available526Open in IMG/M
3300008469|Ga0115369_10026074Not Available2389Open in IMG/M
3300008962|Ga0104242_1065667Not Available606Open in IMG/M
3300008996|Ga0102831_1039272Not Available1596Open in IMG/M
3300009001|Ga0102963_1083640Not Available1306Open in IMG/M
3300009001|Ga0102963_1209687Not Available776Open in IMG/M
3300009152|Ga0114980_10453041Not Available733Open in IMG/M
3300009158|Ga0114977_10738368Not Available522Open in IMG/M
3300009184|Ga0114976_10538607Not Available598Open in IMG/M
3300010299|Ga0129342_1007093Not Available4845Open in IMG/M
3300010299|Ga0129342_1103025Not Available1069Open in IMG/M
3300010300|Ga0129351_1364823Not Available541Open in IMG/M
3300010370|Ga0129336_10228817Not Available1050Open in IMG/M
3300011010|Ga0139557_1043820Not Available770Open in IMG/M
3300012012|Ga0153799_1058357Not Available704Open in IMG/M
3300012013|Ga0153805_1096666Not Available502Open in IMG/M
3300012663|Ga0157203_1020157Not Available980Open in IMG/M
3300012667|Ga0157208_10012746Not Available1157Open in IMG/M
3300012667|Ga0157208_10016705Not Available991Open in IMG/M
(restricted) 3300013130|Ga0172363_10082704Not Available2275Open in IMG/M
3300017710|Ga0181403_1109363Not Available578Open in IMG/M
3300017722|Ga0181347_1057059Not Available1170Open in IMG/M
3300017985|Ga0181576_10405969Not Available849Open in IMG/M
3300018049|Ga0181572_10413361Not Available841Open in IMG/M
3300018418|Ga0181567_10718378Not Available637Open in IMG/M
3300018421|Ga0181592_10675695Not Available692Open in IMG/M
3300018424|Ga0181591_10140343Not Available1943Open in IMG/M
3300018790|Ga0187842_1087302Not Available952Open in IMG/M
3300020159|Ga0211734_11157974Not Available1806Open in IMG/M
3300020161|Ga0211726_10684641Not Available1691Open in IMG/M
3300020172|Ga0211729_10747761Not Available787Open in IMG/M
3300020205|Ga0211731_10772235Not Available547Open in IMG/M
3300020207|Ga0181570_10116336Not Available1497Open in IMG/M
3300021376|Ga0194130_10067881Not Available2446Open in IMG/M
3300021958|Ga0222718_10533983All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Ralstonia phage RsoM2USA561Open in IMG/M
3300021960|Ga0222715_10632589Not Available548Open in IMG/M
3300021961|Ga0222714_10512108Not Available614Open in IMG/M
3300021962|Ga0222713_10573989Not Available662Open in IMG/M
3300021963|Ga0222712_10708469Not Available566Open in IMG/M
3300023087|Ga0255774_10480331Not Available535Open in IMG/M
3300023105|Ga0255782_10144789Not Available1221Open in IMG/M
3300023108|Ga0255784_10425943Not Available625Open in IMG/M
3300024291|Ga0228660_1093481Not Available588Open in IMG/M
3300024481|Ga0256330_1022213Not Available1341Open in IMG/M
3300024481|Ga0256330_1080418Not Available690Open in IMG/M
3300024505|Ga0255150_1010217Not Available1642Open in IMG/M
3300024572|Ga0255268_1124296Not Available643Open in IMG/M
3300025695|Ga0209653_1132321Not Available757Open in IMG/M
3300026130|Ga0209961_1078859Not Available587Open in IMG/M
3300026187|Ga0209929_1099894Not Available754Open in IMG/M
3300026455|Ga0255155_1011470All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium CG_4_9_14_3_um_filter_33_161628Open in IMG/M
3300027144|Ga0255102_1077345Not Available523Open in IMG/M
3300027295|Ga0255126_1053549Not Available776Open in IMG/M
3300027608|Ga0208974_1140773Not Available619Open in IMG/M
3300027621|Ga0208951_1105435Not Available766Open in IMG/M
3300027644|Ga0209356_1187151Not Available563Open in IMG/M
3300027689|Ga0209551_1032035Not Available1766Open in IMG/M
(restricted) 3300027728|Ga0247836_1141314Not Available1060Open in IMG/M
3300027734|Ga0209087_1332572Not Available530Open in IMG/M
3300027759|Ga0209296_1342827Not Available578Open in IMG/M
3300027763|Ga0209088_10345513Not Available589Open in IMG/M
3300027769|Ga0209770_10258840Not Available672Open in IMG/M
3300027798|Ga0209353_10266620Not Available733Open in IMG/M
3300027892|Ga0209550_10459402Not Available774Open in IMG/M
3300027892|Ga0209550_10673275Not Available599Open in IMG/M
3300027917|Ga0209536_102919219Not Available553Open in IMG/M
3300027963|Ga0209400_1323774Not Available581Open in IMG/M
(restricted) 3300027970|Ga0247837_1024243All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4746Open in IMG/M
3300027973|Ga0209298_10316382Not Available605Open in IMG/M
3300027974|Ga0209299_1327851Not Available527Open in IMG/M
(restricted) 3300027977|Ga0247834_1206377Not Available738Open in IMG/M
3300028178|Ga0265593_1079765Not Available893Open in IMG/M
3300028196|Ga0257114_1339406Not Available508Open in IMG/M
3300028396|Ga0228643_1122279Not Available598Open in IMG/M
3300031519|Ga0307488_10067898Not Available2691Open in IMG/M
3300031700|Ga0302130_1120112Not Available831Open in IMG/M
3300031784|Ga0315899_11602720Not Available540Open in IMG/M
3300031857|Ga0315909_10002505Not Available23510Open in IMG/M
3300031857|Ga0315909_10072990All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3061Open in IMG/M
3300032050|Ga0315906_10047850Not Available4480Open in IMG/M
3300032050|Ga0315906_11194418Not Available552Open in IMG/M
3300032093|Ga0315902_11225497Not Available537Open in IMG/M
3300034018|Ga0334985_0469865Not Available733Open in IMG/M
3300034061|Ga0334987_0535113Not Available706Open in IMG/M
3300034104|Ga0335031_0263630Not Available1137Open in IMG/M
3300034104|Ga0335031_0492610Not Available747Open in IMG/M
3300034106|Ga0335036_0905013Not Available500Open in IMG/M
3300034108|Ga0335050_0404806Not Available612Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake17.14%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater9.52%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake9.52%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh8.57%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater6.67%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater6.67%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater5.71%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water4.76%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient3.81%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater2.86%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water2.86%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic1.90%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake1.90%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.90%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater0.95%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.95%
Surface IceEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice0.95%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater0.95%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater0.95%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.95%
Marine SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment0.95%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine0.95%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.95%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.95%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.95%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.95%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.95%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment0.95%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater0.95%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water0.95%
WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water0.95%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300003395Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SNEnvironmentalOpen in IMG/M
3300003412Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DDEnvironmentalOpen in IMG/M
3300003429Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SNEnvironmentalOpen in IMG/M
3300003616Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DNEnvironmentalOpen in IMG/M
3300004096Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 2)EnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004124Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (version 2)EnvironmentalOpen in IMG/M
3300005517Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)EnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300007523Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03EnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300008450Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigsEnvironmentalOpen in IMG/M
3300008469Marine sediment microbial communities from shallow-sea hydrothermal vent, Milos, Greece - WM1EnvironmentalOpen in IMG/M
3300008962Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5EnvironmentalOpen in IMG/M
3300008996Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747EnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009158Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaGEnvironmentalOpen in IMG/M
3300009184Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaGEnvironmentalOpen in IMG/M
3300010299Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300010370Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNAEnvironmentalOpen in IMG/M
3300011010Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface IceEnvironmentalOpen in IMG/M
3300012012Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012013Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface IceEnvironmentalOpen in IMG/M
3300012663Freshwater microbial communities from Indian River, Ontario, Canada - S50EnvironmentalOpen in IMG/M
3300012667Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15EnvironmentalOpen in IMG/M
3300013130 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2EnvironmentalOpen in IMG/M
3300017710Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28EnvironmentalOpen in IMG/M
3300017722Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017985Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018049Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018418Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018421Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018424Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018790Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_41EnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300020161Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020205Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1EnvironmentalOpen in IMG/M
3300020207Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101406AT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300021376Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surfaceEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300023087Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaGEnvironmentalOpen in IMG/M
3300023105Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaGEnvironmentalOpen in IMG/M
3300023108Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaGEnvironmentalOpen in IMG/M
3300024291Seawater microbial communities from Monterey Bay, California, United States - 74DEnvironmentalOpen in IMG/M
3300024481Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_0h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024505Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8hEnvironmentalOpen in IMG/M
3300024572Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025695Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026130Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026187Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026455Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepC_8hEnvironmentalOpen in IMG/M
3300027144Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_0hEnvironmentalOpen in IMG/M
3300027295Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepA_8dEnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027621Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027644Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027689Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027728 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14mEnvironmentalOpen in IMG/M
3300027734Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027759Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027763Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027769Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027798Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027892Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027917Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)EnvironmentalOpen in IMG/M
3300027963Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027970 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14.5mEnvironmentalOpen in IMG/M
3300027973Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027974Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027977 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12mEnvironmentalOpen in IMG/M
3300028178Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_36mEnvironmentalOpen in IMG/M
3300028196Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10mEnvironmentalOpen in IMG/M
3300028396Seawater microbial communities from Monterey Bay, California, United States - 55DEnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031700Marine microbial communities from Western Arctic Ocean, Canada - CB9_surfaceEnvironmentalOpen in IMG/M
3300031784Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300032093Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117EnvironmentalOpen in IMG/M
3300034018Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021EnvironmentalOpen in IMG/M
3300034061Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028EnvironmentalOpen in IMG/M
3300034104Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120EnvironmentalOpen in IMG/M
3300034106Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131EnvironmentalOpen in IMG/M
3300034108Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2014-rr0157EnvironmentalOpen in IMG/M
3300034284Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
B570J40625_10043885813300002835FreshwaterMNFGYLIVVASNPDVDYLKLAYALALSIKNTQKPGYDKVALVIDN
JGI25917J50250_101232643300003395Freshwater LakeMNFGYLLIVAEHESIDYLQLAYGLALSIKNTQREGYDRVAIVIDDKTKIEKLTSPWVF
JGI25912J50252_1010728923300003412Freshwater LakeMNFGYLIVVASNNDIDYLKLAYALALSIKNTQKPGYDKVALVIDNPQLVDNLK
JGI25914J50564_1007292313300003429Freshwater LakeMNFGYLLFVAHNDDIDYLKCAYALALSIKTTQKPGYDRVALVID
JGI25928J51866_107722613300003616Freshwater LakeMNFGYLIVVSTNAEIDYLKLAYALALSIKNTQQPGYDQVALV
JGI25928J51866_111540723300003616Freshwater LakeMNFGYLLFVAHNDDIDYLKCAYALALSIKTTQKPGYDRVALVIDNKESLEKLT
Ga0066177_1027930523300004096Freshwater LakeMNFGYLLIVAEHESIDYLQLAYGLALSIKNTQREGYDRVAIVIDDKTKIEKLTSPW
Ga0055584_10009652553300004097Pelagic MarineMKFGYLIIVNDKQDTDYAKLAYALALSIKNTQKEGYDKVALVINDK
Ga0066178_1002667233300004124Freshwater LakeMNFGYLIVVASNNDIDYLKLAYALALSIKNTQKPGYDKVALVIDNPQLVDNLKS
Ga0066178_1022928713300004124Freshwater LakeMNFGYLIVVSTNTEIDYLKLAYALALSIKNTQQPGYDQVALVIDNLELVSRLKSP
Ga0070374_1043039813300005517Freshwater LakeMNFGYLIFVAIHPDIDYLKLAYALALSIKNTQKPGYDRVALVINDKTPVDEL
Ga0078894_1058772223300005662Freshwater LakeMNFGYLLVIAEHESINYLQLAYGLALSIKNTQREGYDRVAIVIDDKTKIEKLT
Ga0105052_1050921713300007523FreshwaterMSFGYLLVVAEHESVDYLKLAYGLALSIKNTQREGYDSVALVIDNKQKLSELTSAWVFDH
Ga0099849_131024613300007539AqueousMNFGYLLIVNEKDDVNYARMAYALALSIKNTQKEGYDKVALVINDKKK
Ga0114880_126473123300008450Freshwater LakeMNFGYLIIVSSNNNIDYLKLAYALALSIKNTQRDG
Ga0115369_1002607413300008469Marine SedimentMTFGYLLVVSTSDKADYLSMAYALALSIKNTQKEGYDKVALVIDDLSAVKKLKLPW
Ga0104242_106566723300008962FreshwaterMNFGYLLVVAEHDSIDYLQLAYGLALSIKNTQREGYDRVAIVIDDKTKIEQ
Ga0102831_103927213300008996EstuarineMNFGYLLFVAHNDDIDYLKCAYALALSIKTTQKPGYDRVALVIDNKESLAKLSSP
Ga0102963_108364033300009001Pond WaterMNFGYLIVVNENNKHHYSRLAYALALSIKNTQKPG
Ga0102963_120968713300009001Pond WaterMKFGYLIIVNDKQDTDYAKLAYALALSIKNTQKEGYDKVALVINDKTR
Ga0114980_1045304123300009152Freshwater LakeMNFGYLLVVADHESIDYLQLAYGLALSIKNTQQEGYDRVAIVIDDKTKIEKLT
Ga0114977_1073836823300009158Freshwater LakeMNFGYLLFVSHNDDIDYLKCAYALALSIKTTQKPGYDRVALIIDNKESLA
Ga0114976_1053860713300009184Freshwater LakeMNFGYLLVVADHESIDYLQLAYGLALSIKNTQQEGYDRV
Ga0129342_100709313300010299Freshwater To Marine Saline GradientMTFGYLLIVSEKADTNYARMAYALALSIKNTQKEGYDKVALVINDRKRLEGFTSTWVFDEIIEW
Ga0129342_110302523300010299Freshwater To Marine Saline GradientMTFGYLIIVNDKGDTDYAKLAYALALSIKNTQREGYDKVALVINDKNRIKNFTSTWVFDE
Ga0129351_136482323300010300Freshwater To Marine Saline GradientMSFGYLIVVSDKDDTNYARLAYALALSIKNTQKEGFDKVALVIDDPERI
Ga0129336_1022881723300010370Freshwater To Marine Saline GradientMNFGYLLFVSHHDTIDYLKMAYALALSIKNTQKPGYDKVAIVIDDGSK
Ga0139557_104382023300011010FreshwaterMNFGYLLVVAEHDSIDYLQLAYGLALSIKNTQREGYDRVAIVIDDKTKIEKLT
Ga0153799_105835723300012012FreshwaterMNFGYLLFVAHNDDIDYLKCAYALALSIKTTQKPGYD
Ga0153805_109666623300012013Surface IceMTFGYLIVISKNDSVDYLKLAYALALSIKNTQREGFDKVALITD
Ga0157203_102015713300012663FreshwaterMNFGYLIFVAAHPDIDYLKLAYALALSIKNTQKPGYDKVALVINDKTLVN
Ga0157208_1001274633300012667FreshwaterMKFGYLIFVATHEKTDYLKLAYALALSIKNTQKEGYNQVALV
Ga0157208_1001670513300012667FreshwaterMNFGYLIVVSESDSCDYLKLAYALALSIKATQREGFDKVALVTNNKSAV
(restricted) Ga0172363_1008270443300013130SedimentMNFGYLLVVSYHPDIDYLKMAYALALSIKNTQKPGFDKIA
Ga0181403_110936323300017710SeawaterMTFGYLIIVNDTDTSNYTKLAYTLALSIKNTQKEGFDKVALVINDKTKVESYTSTWVFDE
Ga0181347_105705913300017722Freshwater LakeMNFGYLIVVASNNDIDYLKLAYALALSIKNTQKPGYDKVALVI
Ga0181348_116458013300017784Freshwater LakeMNFGYLLFVAHNDDIDYLKCAYALALSIKTTQKPGYDRVALIIDNKESLATLLSPWV
Ga0181576_1040596933300017985Salt MarshMKFGYLIFVNETHESNYYDLAYALALSIKNTQKEGYDNVSLVIND
Ga0181572_1041336113300018049Salt MarshMNFGYLIFVNESGDSNYSKLAYALALSIKNTQKEGYDKVALVIND
Ga0181567_1071837813300018418Salt MarshMTFGYLIIVNDKEDTNYLNLAYALALSIKNTQKEGYDKVALVVDDKERLKNLT
Ga0181592_1067569513300018421Salt MarshMNFGYLIFVNESSDTNYSRLAYALALSIKNTQKEGYDKVA
Ga0181591_1014034343300018424Salt MarshMTFGYLIIVNDKEDTNYLNLAYALALSIKNTQKEGYDKVALVVDDKERLKNLTSPWVFDE
Ga0187842_108730213300018790FreshwaterMKFGYLIIVAEHETIDYVQLAYGLALSIKNTQRPGFDQVA
Ga0211734_1115797413300020159FreshwaterMNFGYLLFVKKSPDTDYLKLAYALALSIKHTQKPGYDKVALVI
Ga0211726_1068464143300020161FreshwaterMNFGYLIVVAKHDEIDYTQLAYALALTIKNTQKPGYDQVAVVTDDPKRI
Ga0211729_1074776113300020172FreshwaterLIVVAEHDEIDYTQLAYALALTIKNTQKPGYDQVAVVTDDPKRISKLNSSW
Ga0211731_1077223523300020205FreshwaterMTFGYLIVISKNDSVDYLKLAYALALSIKNTQREGFDKVAL
Ga0181570_1011633613300020207Salt MarshMNFGYLIVVAEHNEIEYAKLAYALALSIKNTQKQGYD
Ga0194130_1006788143300021376Freshwater LakeVKFGYLLVVAENEFVDYLQLAYALAISIKNTQKPGFDQVALVISDRQKLNDLNSS
Ga0222718_1053398323300021958Estuarine WaterMTFGYLIIVNDKNDTNYLNLAYALALSIKNTQKEGYDKVALVIDNKDRLKNLTSP
Ga0222715_1063258913300021960Estuarine WaterMSFGYLIVVSDKDDTNYARLAYALALSIKNTQKEGFDKVALVID
Ga0222714_1051210823300021961Estuarine WaterMNFGYLLIVSEHESIDYLKLAYALALSIKNTQREGYDKVA
Ga0222713_1057398923300021962Estuarine WaterMNFGYLMFVAAHPDIDYVKLAYAAALSIKNTQKEGY
Ga0222712_1070846913300021963Estuarine WaterMTFGYLIVVSSNSSIDYLQCAYAAALSIKNTQKPGYDQVA
Ga0255774_1048033123300023087Salt MarshMTFGYLIVVSDKQDTDYAKLAYALALSIKNTQREGYDKVALVINDKNRIKN
Ga0255782_1014478933300023105Salt MarshMNFGYLIIVSEKPETNYSRLAYALALSIKNTQKEGYDKVALVINDKKHIENFTST
Ga0255784_1042594323300023108Salt MarshMTFGYLIIVNDKEDTNYLNLAYALALSIKNTQKEGYDKVALVVDDKERLKNLTSP
Ga0228660_109348123300024291SeawaterMNFGYLIVVATSEEYNYAQMAYALALSIKNTQKEGYDKVALVIDDKTQIENFE
Ga0256330_102221333300024481FreshwaterMNFGYLLIVAENKTVDYLQLAYALALSIKNTQKEGYDKVAIVID
Ga0256330_108041813300024481FreshwaterMSFGYLLIVASHPDVDYLRLAYALALSIKNTQRPGYDQVALVIDNAEDVKQLKSSW
Ga0255150_101021743300024505FreshwaterMTFGYLIVVAKHETIDYTKLAYSLALSIKNTQKWGYNNVAL
Ga0255268_112429623300024572FreshwaterMTFGYLIVVAKHETIDYTKLAYSLALSIKNTQKWGYNNVALVTDDVSAVEQL
Ga0209653_113232113300025695MarineMNFGYLIFVAEHETIPYDRLAYALALSIKATQKPGYDKVALVIDDPD
Ga0209961_107885913300026130WaterMNFGYLIVVSDKETSNYARLAYALALSIKNTQREGYDKVALVINDKSRIESFT
Ga0209929_109989413300026187Pond WaterMKFGYLIIVNDKQDTDYAKLAYALALSIKNTQKEGYDKVALVIND
Ga0255155_101147013300026455FreshwaterMSFGYLLIVASHPDVDYLRLAYALALSIKNTQRPGYDQVALVIDNAEDVKQLK
Ga0255102_107734513300027144FreshwaterMNFGYLLFVSHNDDIDYLKCAYALALSIKTTQKPGYDRVALIIDNKESLATLLS
Ga0255126_105354913300027295FreshwaterMKFGYLLIVAEHETVDYLQLAYALALSIKNTQKQGFDQVALVIDSK
Ga0208974_114077313300027608Freshwater LenticMNFGYLLFVKTSQNTDYLKLGYALALSIKHTQKPGYDKVALVIDDPSLLKKLN
Ga0208951_110543523300027621Freshwater LenticMNFGYLLFVAHNDDIDYLKCAYALALSIKTTQKPGYDRV
Ga0209356_118715113300027644Freshwater LakeMNFGYLIVVASNNDIDYLKLAYALALSIKNTQKPGYDKVALVIDNP
Ga0209551_103203543300027689Freshwater LakeMNFGYLIVVASNNDIDYLKLAYALALSIKNTQKPGYDKVALVIDNPQLVDNLKSPWV
(restricted) Ga0247836_114131413300027728FreshwaterMNFGYLIFVAAHPDIDYLKLAYALALSIKNTQKPGYDKVALVINDRSAVDALT
Ga0209087_122431623300027734Freshwater LakeMSFGYLIIVSTSDNADYLELAYGLALSIKHTQKPGYDQVAL
Ga0209087_133257223300027734Freshwater LakeMNFGYLLIVSHSDTVDYLQLAYGLALSIKNTQKPGYDKVAL
Ga0209296_134282723300027759Freshwater LakeMNFGYLLIVSHSDTVDYLQLAYGLALSIKNTQKPGYDKVALVI
Ga0209088_1034551323300027763Freshwater LakeMNFGYLIFVAAHPDIDYLKLAYAAALSIKNTQKPGYDKVALVINDKSLVN
Ga0209770_1025884023300027769Freshwater LakeMNFGYLIVVSSNSEVDYLKLAYALALSIKNTQRPGYDK
Ga0209353_1026662023300027798Freshwater LakeMNFGYLLVVAEHESIDYLQLAYGLALSIKNTQREGYDRVAIVIDDKTKIEKLTSPWV
Ga0209550_1045940213300027892Freshwater LakeMNFGYLLFVSHNDDIDYLKCAYALALSIKTTQKPG
Ga0209550_1067327513300027892Freshwater LakeMNFGYLLFVAHHNDIDYLKCAYALALSIKTTQRPGYD
Ga0209536_10291921913300027917Marine SedimentMNFGYLIVVSDKGTSNYARLAYALALSIKNTQREGYDKVALV
Ga0209400_132377423300027963Freshwater LakeMNFGYLIVVSSNKEVDYLKLAYALALSIKNTQKPGYDKVALVIDNPEPIKN
(restricted) Ga0247837_102424363300027970FreshwaterMKFGYLLVVAEHETVDYLQLAYALALSIKNTQKQGFDQVALVIDTKDKLKAIKSP
Ga0209298_1031638213300027973Freshwater LakeMNFGYLLIVAEHESIDYLQLAYGLALSIKNTQREGYDRV
Ga0209299_132785113300027974Freshwater LakeMNFGYLLFVKTSQNTDYLKLAYALALSIKHTQKPGYDKVALV
(restricted) Ga0247834_120637713300027977FreshwaterMKFGYLLFVAEHETVDYLQLAYALALSIKNTQKPGFDQVALITENKQKLSQL
Ga0265593_107976523300028178Saline WaterMNFGYLIIVSTTESADYLQMAYALALSIKNTQKDGYNRVALIIDDKSQIDKLN
Ga0257114_133940623300028196MarineMIDFGYLIIVNEGNDTNYTRLAYALALSIKNTQKEGYDKVALVINDKQHIKNFTSTWVFD
Ga0228643_112227913300028396SeawaterMNFGYLIVVATSEEYNYAQMAYALALSIKNTQKEEHMPF
Ga0307488_1006789813300031519Sackhole BrineMNFGYLLIVAEHKSVDYLQLAYALALSIKNTQREGYDKVALVIDSKD
Ga0302130_112011213300031700MarineMNFGYLIVVATSAEHNYAQLAYALALSIKNTQKPGYDKVALVIDDKSQIENFNSP
Ga0315899_1160272023300031784FreshwaterMNFGYLLFVAHNDDIDYLKCAYALALSIKTTQKPGYDRVALVIDNKESLAK
Ga0315909_10002505103300031857FreshwaterMNFGYLIVVASNKDIDYLKLAYALALSIKNTQKPGYD
Ga0315909_1007299013300031857FreshwaterMKFGYLLITSKNESVNYNKLAYALALSIKNTQKEGY
Ga0315906_1004785013300032050FreshwaterMNFGYLIVVASNKDIDYLKLAYALALSIKNTQKPGYDNVALVIDNPQLVDN
Ga0315906_1119441813300032050FreshwaterMNFGYLIFASNENLDYLKMAYCLAISIKNTQKAGYDKVALVIDDKS
Ga0315902_1122549713300032093FreshwaterMNFGYLIFVAQHQSIDYLKLAYALALSIKNTQQEGYDKVALVIDDKKQID
Ga0334985_0469865_610_7323300034018FreshwaterMKFGYLIIVAEHETIDYVQLAYGLALSIKNTQRPGFDQVAL
Ga0334987_0535113_540_7043300034061FreshwaterMNFGYLLIVAEHDTVDYLSMAYALALSIKNTQKPGYDKVALVIDDQSKLQKLKSP
Ga0335031_0263630_1_1263300034104FreshwaterMSFGYLLIVSEHDSVDYLNLAYALAISIKNTQKPGYDQVALV
Ga0335031_0492610_1_1473300034104FreshwaterMNFGYLLIVSHSDTVDYLQLAYGLALSIKNTQKPGYDKVALVIDDKEKV
Ga0335036_0905013_1_1563300034106FreshwaterMNFGYLIVVAEHDEIDYTQLAYALALTIKNTQKPGYDQVAVVTDNPKRISKL
Ga0335050_0404806_3_1193300034108FreshwaterMNFGYLIVVAEHDEVDYTQLAYALALTIKNTQKPGYDQV
Ga0335013_0082906_2_1783300034284FreshwaterMNFGYLLIVSHSDTVDYLQLAYGLALSIKNTQKPGYDKVALVIDDKEKVEQLKSPWVFD


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