Metagenome Family F094918

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F094918
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	75 residues
Representative Sequence	MDIDVIEKAIKASLEETLKRTRRADEELKKAQQGGRSVGNPKLAEALEEYTRCVDELTYYLKASGRNRDTKA
Number of Associated Samples	56
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.29 %
% of genes near scaffold ends (potentially truncated)	29.52 %
% of genes from short scaffolds (< 2000 bps)	92.38 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (81.905 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Sand → Desert → Soil (47.619 % of family members)
Environment Ontology (ENVO)	Unclassified (46.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (82.857 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122 1FNTS007_00450670 2FNTS067_05985260 3FNTS067_05100620 42209136465 52209357807 6LCrCPGB2aDRAFT_0120691 7LCrCPGB2aDRAFT_0249782 8LCrCPGB2aDRAFT_0297362 9LCrCPGB2aDRAFT_0438652 10Ga0105679_107547451 11Ga0126307_101718811 12Ga0126307_101915902 13Ga0126307_103785102 14Ga0126307_114946471 15Ga0126307_115121171 16Ga0126313_107105332 17Ga0126304_105553121 18Ga0126309_100325751 19Ga0126309_100654732 20Ga0126309_104792172 21Ga0126309_105048852 22Ga0126309_105606822 23Ga0126309_112508361 24Ga0126308_108291011 25Ga0126312_102659582 26Ga0126314_105313732 27Ga0126306_100376172 28Ga0126306_106283211 29Ga0136627_10030589 30Ga0136632_101425802 31Ga0136619_100388663 32Ga0136619_101717322 33Ga0136620_101710662 34Ga0136618_100421944 35Ga0136618_100603875 36Ga0136618_101059791 37Ga0136630_11934831 38Ga0136640_101762342 39Ga0136615_102546392 40Ga0136615_103870301 41Ga0136616_101386132 42Ga0136613_101555771 43Ga0170683_100054574 44Ga0183260_105541982 45Ga0183260_108591051 46Ga0183260_109138821 47Ga0136617_106000372 48Ga0136617_107852551 49Ga0190275_120161922 50Ga0190269_106042231 51Ga0190268_100200082 52Ga0190268_122733581 53Ga0193596_10074861 54Ga0193596_10185062 55Ga0193596_10589361 56Ga0193606_11243731 57Ga0193613_10721322 58Ga0193613_10932581 59Ga0193608_10082583 60Ga0193608_10136652 61Ga0193608_10236632 62Ga0193608_11243931 63Ga0193610_11434191 64Ga0193607_10996981 65Ga0193607_11760331 66Ga0193603_10307512 67Ga0193609_11705012 68Ga0193598_10238132 69Ga0193598_10892741 70Ga0193598_10968862 71Ga0193615_11114901 72Ga0193615_11416441 73Ga0193611_10076407 74Ga0193611_10524953 75Ga0193616_11781771 76Ga0193601_11961352 77Ga0193614_10767032 78Ga0193614_10940192 79Ga0193614_11190541 80Ga0193593_10577533 81Ga0193593_10916532 82Ga0193599_10840222 83Ga0193599_11712921 84Ga0193599_11716201 85Ga0193589_10984252 86Ga0193605_10543722 87Ga0193605_10830872 88Ga0193605_11810191 89Ga0193605_12475171 90Ga0193592_10331171 91Ga0193592_10600051 92Ga0193602_10803442 93Ga0193602_11170501 94Ga0190264_123257281 95Ga0334930_079156_350_577 96Ga0334936_011295_1744_1989 97Ga0334936_022365_1068_1286 98Ga0334936_092862_293_562 99Ga0334936_096269_156_374 100Ga0334936_109007_223_441 101Ga0334915_043639_407_625 102Ga0334929_059300_448_675 103Ga0334925_021011_203_463 104Ga0334925_131139_3_221 105Ga0334935_147829_225_443
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122 1FNTS007_00450670 2FNTS067_05985260 3FNTS067_05100620 42209136465 5Ga0126307_101915902 6Ga0126307_114946471 7Ga0126313_107105332 8Ga0126304_105553121 9Ga0126309_100325751 10Ga0126306_106283211 11Ga0170683_100054574 12Ga0183260_109138821 13Ga0190269_106042231 14Ga0193596_10589361 15Ga0193608_10236632 16Ga0193605_10830872
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 1Ga0193608_11243931 2FNTS007_00450670 3FNTS067_05985260 4FNTS067_05100620 5LCrCPGB2aDRAFT_0120691 6LCrCPGB2aDRAFT_0249782 7Ga0105679_107547451 8Ga0126309_100325751 9Ga0126309_104792172 10Ga0126309_105606822 11Ga0126308_108291011 12Ga0126312_102659582 13Ga0136619_101717322 14Ga0136618_100421944 15Ga0170683_100054574 16Ga0136617_106000372 17Ga0190268_100200082 18Ga0190268_122733581 19Ga0193606_11243731 20Ga0193608_10236632 21Ga0193601_11961352 22Ga0193593_10916532 23Ga0334925_131139_3_221
Powered by MSAViewer

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.00% β-sheet: 0.00% Coil/Unstructured: 39.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
WebGL does not seem to be available. This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser. For a list of supported browsers, refer to http://caniuse.com/#feat=webgl. Load File(s)

Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00313	CSD	1.90
PF14269	Arylsulfotran_2	1.90
PF07098	DUF1360	1.90
PF00571	CBS	1.90
PF07366	SnoaL	0.95
PF04439	Adenyl_transf	0.95
PF13382	Adenine_deam_C	0.95
PF00990	GGDEF	0.95
PF13560	HTH_31	0.95
PF02796	HTH_7	0.95

Showing 1 to 10 of 20 entries

Previous1 2Next

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.95
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.95
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.95

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.90 %
Unclassified	root	N/A	18.10 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.90 %
Unclassified	root	N/A	18.10 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.90 %
Unclassified	root	N/A	18.10 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	76.19 %
Unclassified	root	N/A	18.10 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	74.29 %
Unclassified	root	N/A	18.10 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	69.52 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.95 %
Unclassified	root	N/A	18.10 %

Name	Rank	Taxonomy	Distribution
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.95 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	69.52 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	0.95 %
Unclassified	root	N/A	18.10 %

Name	Rank	Taxonomy	Distribution
Dermacoccaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae	0.95 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	69.52 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	0.95 %
Unclassified	root	N/A	18.10 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	7.62 %
Luteipulveratus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Luteipulveratus	0.95 %
Unclassified	root	N/A	18.10 %
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	50.48 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	0.95 %

Name	Rank	Taxonomy	Distribution
Luteipulveratus halotolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Luteipulveratus → Luteipulveratus halotolerans	0.95 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	50.48 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.95 %
Unclassified	root	N/A	18.10 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	7.62 %

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2119805009\|FNTS007_GKN1E7E02F4CVA	Not Available	522	Open in IMG/M
2119805012\|FNTS067_GJ87FRN01B313P	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	541	Open in IMG/M
2119805012\|FNTS067_GKA24FP01AGO67	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	535	Open in IMG/M
2209111000\|2209129121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	699	Open in IMG/M
2209111000\|2209293808	Not Available	581	Open in IMG/M
3300000095\|LCrCPGB2aDRAFT_c012069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1651	Open in IMG/M
3300000095\|LCrCPGB2aDRAFT_c024978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1109	Open in IMG/M
3300000095\|LCrCPGB2aDRAFT_c029736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1001	Open in IMG/M
3300000095\|LCrCPGB2aDRAFT_c043865	Not Available	793	Open in IMG/M
3300007790\|Ga0105679_10754745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1093	Open in IMG/M

Showing 1 to 10 of 105 entries

Previous1 2 3 4 5…11Next

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	18.10%
Terrestrial	Environmental → Terrestrial	81.90%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	18.10%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.95%
Soil	Environmental → Terrestrial → Soil	80.95%

Habitat	Taxonomy	Distribution
Ice	Environmental → Aquatic → Freshwater → Ice	18.10%
Sand	Environmental → Terrestrial → Soil → Sand	48.57%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	9.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	22.86%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Desert	Environmental → Terrestrial → Soil → Sand → Desert	48.57%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.90%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	18.10%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	9.52%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	5.71%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	3.81%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	18.10%
Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Rock	0.95%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	17.14%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	47.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.95%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.95%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2119805009	Soil microbial communities from sample at FACE Site NTS_007 Nevada Test Site	Environmental	Open in IMG/M
2119805012	Soil microbial communities from sample at FACE Site NTS_067 Nevada Test Site	Environmental	Open in IMG/M
2209111000	Soil microbial communities from Colorado Plateau, Greene Butte sample - Dark Crust, Colorado Plateau, Green Butte	Environmental	Open in IMG/M
3300000095	Soil microbial communities from Colorado Plateau, Green Butte sample - Light Crust, Colorado Plateau, Green Butte 2	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M

Showing 1 to 10 of 56 entries

Previous1 2 3 4 5 6Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FNTS007_00450670	2119805009	Soil	MSGRRVAMDIDVIETAIKASLQETLKRTRQADEELRKAEQGGRSVGTPKLAEALEEYTRCVEELTYYLKASGRNRDTDT
FNTS067_05985260	2119805012	Soil	MDIDVVEQAIKVSLEEALKRMRRADEELKKAQQGRPGRGNPKLAGALEEYTGCVAELTYYLKASERNRDTNS
FNTS067_05100620	2119805012	Soil	MDIDVVERAIKSSLEEALKRMREADAQLTKAQQGGRSDRNLRLAEALEEYNRCLAELTCYLKASGRHRDTDA
2209136465	2209111000	Soil	MDIDVIEKAIKASLEETLKRTRRADEELKKAQQGGRGVGNPELVEALEEYTRCVDELTYYLKASGRNRHTHQPEGPIHRTS
2209357807	2209111000	Soil	MDIDVIETAIKASLQETLKRARRADEELRKAEQGGRSVGTPKLAEALEEXTRCVEELTYYLKASGRNRDTNT
LCrCPGB2aDRAFT_0120691	3300000095	Soil	MDIDVIEKAIKASLEETLKRTRRADEELKKAEQGGRGVGNPKLAEALEEYARCVDELTYYLKASDQNRDANT*
LCrCPGB2aDRAFT_0249782	3300000095	Soil	MDIDFVEKAIKASLEETLKRTRRADEELKKAQQGGRGVGNPELVEALEEYTRCVDELTYYLKASGRNRHTHQPEGPIHRTS*
LCrCPGB2aDRAFT_0297362	3300000095	Soil	MDIDVIEKAIKVSLEETLKRTRRAEEELKKAQQGGRSVGNPKLAEALEEYTRCVDELTYYLKASGRTRDTNT*
LCrCPGB2aDRAFT_0438652	3300000095	Soil	MSGRRVAMDIDVIETAIKASLEETLKRTRRADEELKKLEQGGRGVGTAKLAEALEEYTRCVEELTYYLKASGRNRDTDT*
Ga0105679_107547451	3300007790	Soil	MDIDVVERAIKSSLEDALKRMRQAEARLTKAQQAGRSERNLKLAEALEEYNRCVAELTCYLRASDRERDTDA*
Ga0126307_101718811	3300009789	Serpentine Soil	MDIDVIERAIKSSLETALKRMRDAEARLTKAQQGGRGEGNLKLAEALEEYNGCVAELTYYLKASSRQGDTDA*
Ga0126307_101915902	3300009789	Serpentine Soil	VAVDIDVVEKAIKASLEEALKRARRAEEELKKAEQGGRGVGTPRLAEALEEYTRCVQELTYYLKASDRDRDNDA*
Ga0126307_103785102	3300009789	Serpentine Soil	MGTTRTGMSGRRVAMDIDVVDTAIKASLEETLKRTRRADEELKKAEQGGRSVGTPKLAEALEEYTRCVEELTYYLKASGRNRDTNI*
Ga0126307_114946471	3300009789	Serpentine Soil	MPLRTGARSGGCRIGEDVHADARTGVAMDIDVVDTAIKASLEETLKRTRRAEEELKKAEQGGRGVGTPRLAEALEEYTRCVEELTYYLKASDRDRD
Ga0126307_115121171	3300009789	Serpentine Soil	MDIDVLERAIKTSLEEALKRMRDADAELTKLLQQGGRGERSLKLAEALEEYNRCVAELTYYLKASSRPSQERDTDA*
Ga0126313_107105332	3300009840	Serpentine Soil	MDIDVIERAIKNSLEEALKRMRNAEAQLAKAQQGSRGERNLKLAEALEEYNGCVAELTSYVKASSRQRDTDASEALFTRVRGMGVLRTSP*
Ga0126304_105553121	3300010037	Serpentine Soil	KSGTFTAGITRKVPMDIDVIERAIKSSLETALKRMRDAEARLTKAQQGGRGEGNLKLAEALEEYNGCVAELTYYLKASSRQGDTDA*
Ga0126309_100325751	3300010039	Serpentine Soil	VQEEERTEGGAVDIDVLERTIKSSLEEALKRMRDADAELTKAQQGGRGERNLKLAEALEEYNRCVAELTYYLKASNRQRDTEA*
Ga0126309_100654732	3300010039	Serpentine Soil	VQEEERTEGGAVDIDVLERAIKSSLEEALKRMRDADAELTKAQQAGRGERNLKLAEALEEYNRCVAELSYYLKASNRQRDTEA*
Ga0126309_104792172	3300010039	Serpentine Soil	MDIDVVEKAIKASLEEALKRTRRAEEELKKAEQGGRGVGTPKLAEALEEYTRCVEELTYYLKASDRNRDTEA*
Ga0126309_105048852	3300010039	Serpentine Soil	MDIDVLERAIKTSLEEALKRMRDADAELTKVLQQGGRGERNLKLAEALEEYNRCVAELTYYLKASSRPSQNRDTDA*
Ga0126309_105606822	3300010039	Serpentine Soil	MDIDVLERAIKSSLEEALKRMRDADAQLTKAQQGGPAERNLKLAEALEEYNKCVAELAYYLKASNRHRDTDA*
Ga0126309_112508361	3300010039	Serpentine Soil	VHEDVRTGVAMDIDVIEKAIKASLEEALKRTRRADEELKKAEQGGRGVGNPKLVEALEEYTRCVEELTYYLKASDQNRDTEA*
Ga0126308_108291011	3300010040	Serpentine Soil	MDIDFLERAIKSSLEEALKRMRDADAELTKAQQGGRDERNLNLAEALEEYNRCAAELTYYLKASSHSSQHRDNDP*
Ga0126312_102659582	3300010041	Serpentine Soil	MDIDVIERAIKSSLETALKRMRDAEAQLTKAQQGGRGEGNLKLAEALEEYNGCVAELTYYLKASSRQGDTDA*
Ga0126314_105313732	3300010042	Serpentine Soil	MDIDILERAIKTSLEEALKRMRDADAELTKLLQQGGRGERSLKLAEALEEYNRCVAELTYYLKASSRPSQHRDTDA*
Ga0126306_100376172	3300010166	Serpentine Soil	MDIDVIERAIKSSLETALKRMRDAEARLTKAQQGGRGEGNLKLAEALEEYNGCVAELTYYLKASSRQRDTDPE*
Ga0126306_106283211	3300010166	Serpentine Soil	MDIDILERAIKTSLEEALKRMRDADAELTKLLQQGGRGERDLKLAEALEEYNRCVAELTYYLKASSRPSQNRDTDA*
Ga0136627_10030589	3300012042	Polar Desert Sand	MDIDVIEKAIKASLEETLKRMRRADEELKKAQQGGRSVGNPKLAEALEEYTGCVAELTYYLKASGRNRDTNA*
Ga0136632_101425802	3300012093	Polar Desert Sand	MSGRRVAMDIDVIEKAIKASLEETLKRMRRADEELKKAQQGGRSVGNPKLAEALEEYTGCVAELTYYLKASGRNRDTNA*
Ga0136619_100388663	3300012185	Polar Desert Sand	MSGRRVAMDIDVIEKAIKASLEETLKRTRRADEELKKAQQGGRSVGNPKLAEVLEEYTRCVDELTYYLKASDRNRDTHA*
Ga0136619_101717322	3300012185	Polar Desert Sand	DVIEKAIKASLEETLKRTRRADEELKKAQQGRPGVGNPKLVEALEEYTGCVAELTYYLKASDQNRDTNA*
Ga0136620_101710662	3300012186	Polar Desert Sand	MSGRRVAMDIDVIEKAIKASLEETLKRTRRADEELKKAQQGGRGVGNPKLAEALEEYTRCVDELTYYLKASDRNRDTHA*
Ga0136618_100421944	3300012188	Polar Desert Sand	MDIDVIEKAIKSSLEETLKRMRRADEELKKAQQGGRGEGNPKLVEALEEYTRCVAELTYYLKASGQNRDTNA*
Ga0136618_100603875	3300012188	Polar Desert Sand	SGTTCTKMSGRRVAMDIDVIEKAIKASLEETLKRMRRADEELKKAQQGGRSVGNPKLAEALEEYTGCVAELTYYLKASGRNRDTNA*
Ga0136618_101059791	3300012188	Polar Desert Sand	MDIDVVEKAIKSSLEEALKKMRRADEELKKAQQGRPGVGNPKLVEALEEYTGCVAELTYYLKASDQNRDTNA*
Ga0136630_11934831	3300012529	Polar Desert Sand	AMDIDVIEKAIKASLEETLKRTRRADEELKKAQQGGRGVGNPKLAEVLEEYTRCVDELTYYLKASDRNRDTHA*
Ga0136640_101762342	3300012531	Polar Desert Sand	MSGRRVAMDIDVIEKAIKASLEETLKRTRRADEELKKAQQGGRGVGNPKLAEVLEEYTRCVDELTYYLKASDRNRDTHA*
Ga0136615_102546392	3300012678	Polar Desert Sand	GTTCTKMSGRRVAMDIDVIEKAIKASLEETLKRTRRADEELKKAQQGGRGVGNPKLAEVLEEYTRCVDELTYYLKASDRNRDTHA*
Ga0136615_103870301	3300012678	Polar Desert Sand	MDIDVIEKAIEASLEETLKRMRRADEELKKAQQGGRSVGNPKLAEALEEYTGCVAELTYYLKASG
Ga0136616_101386132	3300012679	Polar Desert Sand	MDIDVIEKAIKASLEETLKRMRRADEALKKAQQGGRGEGNPKLVEALEEYTRCVAELTYYLKASGQNRDTNA*
Ga0136613_101555771	3300012681	Polar Desert Sand	MDIDVIEKAIKASLEETLKRMRRADEELKKAQQGGRSVGNPKLAEALEEYTGCVAELTYYLKASGRNRDTNV*
Ga0170683_100054574	3300013027	Rock	MDVDVVERAIKASLEEALKRARRAEEGLKRAQQGRRGGGGDAKLAEALEEYARCVAELTYYLRSPGRDRDTDA*
Ga0183260_105541982	3300017787	Polar Desert Sand	MDIDVIEKAIKASLEETLKRTRRADEELKKAQQGGRGVGNPKLAEVLEEYTRCVDELTYYLKASDRNRDTHA
Ga0183260_108591051	3300017787	Polar Desert Sand	MSGRRVAMDIDVIEKAIKSSLEETLKRMRRADEELKKAQQGGRGEGNPKLVEALEEYTGCVAELTYYLKASDQNRDTNA
Ga0183260_109138821	3300017787	Polar Desert Sand	MDIDVIEKAIKASLEETLKRMRRADEELKKAQQGGRSVGNPKLAEVLEEYTRCVDELTYY
Ga0136617_106000372	3300017789	Polar Desert Sand	MDIDVVEKAIKSSLEEALKKMRRADEELKKAQQGGRGVGNPKLAEALEEYTRCVDELTYYLKASDRNRDTHA
Ga0136617_107852551	3300017789	Polar Desert Sand	MSGRRVAMDIDVIEKAIKASLEETLKRTRRADEELKKAQQGGRSVGNPKLAEVLEEYTRCVDELTYYLKASDRNRDTHA
Ga0190275_120161922	3300018432	Soil	VDIDVLERAIKSSLEEALKRMRDADAELTKAQQGGRGERNLKLAEALEEYNRCVAELTYYLKASNRQRDTEA
Ga0190269_106042231	3300018465	Soil	MDIDVIERAIKNSLEEALKRMRDAEPQLAKAQQGGRGERNLKLAEALEEYNGCVAELTYYLKASSRQRDPDPDPE
Ga0190268_100200082	3300018466	Soil	MDIDVIERAIKNSLEEALKRMRDAEARLAKAQQGGRGERNLKLAEALEEYNGCVAELTYYLKASSRQRDPDPDPE
Ga0190268_122733581	3300018466	Soil	MDIDVLERAIKTSLEEALKRMRDADAELTKVLQQGGRGERNLKLAEALEEYNRCVAELTYYLKASSRPNQHRDTDA
Ga0193596_10074861	3300018719	Soil	MDIDVIEKAIKASLEETLKRTRRAEEELKKAQQGGRSVGNPKLAEALEEYTRCVDELTYYLKASGRNRDTKA
Ga0193596_10185062	3300018719	Soil	MDIDVVERAIKSSVEEAVKRMREAEAQLTKAQQGGRAGERNSALAEALEEYNRCLAELTYYLKASS
Ga0193596_10589361	3300018719	Soil	VEEAVKRMREAQAQLTKAQQGGRAGERNSALAEALEEYNRCLAELTYYLKASSQQGNTDA
Ga0193606_11243731	3300018839	Soil	MDIDVVERAIKSSVEEAVKRMREAEAQLTKAQQGGRAGERNSALAEALEEYNRCLAELTYYLKASSQQGNTDA
Ga0193613_10721322	3300018866	Soil	MDIDVVERAIKSSVDEAVKRMREAEAQLTKAQQGGRAGERNSALAEALEEYNRCLAELTYYLKASSQQGNTDA
Ga0193613_10932581	3300018866	Soil	MDIDVIEKAIKASLEETLKRTRRAEEELKKAQQGGRSVGNPKLAEALEEYTRCVDELTYYLKASGRTRDTNT
Ga0193608_10082583	3300018875	Soil	MDIDFVEKAIKASLEETLKRTRRADEELNKAQQGGRGVGNPELVEALEEYTRCVDELTYYLKASGRNRHTHQSEGPIHRTS
Ga0193608_10136652	3300018875	Soil	MDIDVIEKAIKVSLEEALKRTRRAEEELKKAQQGGRSVGNPKLAEALEEYTRCVDELTYYLKASGRTRDTNT
Ga0193608_10236632	3300018875	Soil	MSGRRVAMDIDVIETAIKASLEETLKRTRRADEELKKLEQGGRGVGTAKLAEALEEYTRCVEELT
Ga0193608_11243931	3300018875	Soil	MDIDVIEKAIKASLEETLKRTRRADEELKKAQQGGRSVGNPKLAEALEEYTRCVDELTYYLKASGRNRDTKA
Ga0193610_11434191	3300018891	Soil	GRRVAMDIDVIEKAIKVSLEEALKRTRRAEEELKKAQQGGRSVGNPKLAEALEEYTRCVDELTYYLKASGRTRDTNT
Ga0193607_10996981	3300018892	Soil	MDIDVIEKAIKASLEETLKRTRRAEEELKKAQQGGRSVGNPKLAEALEEYTRCVDELTYYLKASGRNRDTNQPEGPIHHTS
Ga0193607_11760331	3300018892	Soil	MDIDVIEAAIKVSLQETLKRTRRADEELKKAEQGGRSVGTPKLAEALEEYTRCVEELTYYLKASDRNRDTNT
Ga0193603_10307512	3300018894	Soil	MDIDVIEKAIKASLEETLKRTRRADEELEKAQQGGRGVGNPKLVEALEEYTRCVDELTYYLKASGRNRDTNQPEGPIHRTS
Ga0193609_11705012	3300018906	Soil	RRVAMDIDVIEKAIKVSLEEALKRTRRAEEELKKAQQGVRSVGNPKLAEALEEYTRCVDELTYYLKASGRTRDTNT
Ga0193598_10238132	3300018910	Soil	MDIDFVEKAIKASLEETLKRTRRADEELKKAQQGGRGVGNPELVEALEEYTRCVDELTYYLKASGRNRHTHQSEGPIHRTS
Ga0193598_10892741	3300018910	Soil	MSGRRVAMDIDVIETAIKASLEETLKRTRRADEELKKLEQGGRGVGTAKLAEALEEYTRCVEELTYYLKASGRNRATDT
Ga0193598_10968862	3300018910	Soil	MDIDVVERAIKSSVDEAVKRMREAEAQLTKAQQGGRAGERNSALAEALEEYNRCLAELTYYLKASSRQGNTDA
Ga0193615_11114901	3300018916	Soil	MDIDVIEKAIKTSLEETLKRTRRADEELKKAQQGGRSVGNPKLAEALEEYTRCVDELTYYLKASGRTRDTNT
Ga0193615_11416441	3300018916	Soil	MDIDVVERAIKSSVEEAVKRMREAQAQLTKAQQGGRAGERNSALAEALEEYNRCLAELTYYLKASSRQGNTDA
Ga0193611_10076407	3300018917	Soil	RRVAMDIDFVEKAIKASLEETLKRTRRADEELNKAQQGGRGVGNPELVEALEEYTRCVDELTYYLKASGRNRHTHQSEGPIHRTS
Ga0193611_10524953	3300018917	Soil	GTTCTKTSGRRVAMDIDVIEKAIKVSLEEALKRTRRAEEELKKAQQGGRSVGNPKLAEALEEYTRCVDELTYYLKASGRTRDTNT
Ga0193616_11781771	3300018918	Soil	MDIDVIEKAIKVSLEEALKRTRRAEEELKKAQQGGRSVGNPKLAEALEEYTRCVDELTYYLK
Ga0193601_11961352	3300018931	Soil	DVVEKAIKTSLEETLKRMRRAEEELKKAQQGGRSVGNPKLVEVLEEYTRCVAELTYYLKASGRNRDTNT
Ga0193614_10767032	3300018933	Soil	MSTKTSGRRVAMDIDVIEKAIKASLEEALKRTRRADEELKKAQQGGRGVGNPKLAEALEEYTRCVDELTYYLKASDRNHDTDA
Ga0193614_10940192	3300018933	Soil	MDIDFVEKAIKASLEETLKRTRRADEELNKAQQGGRGVGNPELVEALEEYTRCVDELTYYLKASGRN
Ga0193614_11190541	3300018933	Soil	MDIDVVERAIKSSVDEAVKRMREAEAQLTKAQQGGRGGERNSTLAEALEEYNRCLAELTYYLKASSRQGNTDA
Ga0193593_10577533	3300018939	Soil	DVIEKAIKVSLEEALKRTRRAEEELKKAQQGGRSVGNPKLAEALEEYTRCVDELTYYLKASGRTRDTNT
Ga0193593_10916532	3300018939	Soil	MDIDVVERAIKSSVDEAVKRTREAEAQLTKAQQGGRAGERNSALAEALEEYNRCLAELTYYLKASSRLKASS
Ga0193599_10840222	3300018946	Soil	MSGRRVAMDIDVIEAAIKVSLQETLKRTRRADEELKKAEQGGRSVGTPKLAEALEEYTRCVEELTYYLKASDRNRDTNT
Ga0193599_11712921	3300018946	Soil	MDIDVIEKAIKVSLEEALKRTRRAEEELKKAQQGGRNVGNPKLAEALEEYTRCVDELTYYLKASGRTRDTNT
Ga0193599_11716201	3300018946	Soil	MDIDVIEKAIKASLEETLKRTRRADEELKKAQQGGRSVGNPKLAEALEEYTRCVDELTYYLKASG
Ga0193589_10984252	3300018962	Soil	EEAVKRMREAQAQLTKAQQGGRAGERNSALAEALEEYNRCLAELTYYLKASSQQGNTDA
Ga0193605_10543722	3300018984	Soil	MDIDVIETAIKVSLQETLKRTRRADEELKKAEQGGRSVGTPKLAEALEEYTRCVEELTYYLKASDRNRDTNT
Ga0193605_10830872	3300018984	Soil	WGAVESGTTCTKTSGRRVAMDIDVIEKAIKVSLEEALKRTRRAEEELKKAQQGGRSVGNPKLAEALEEYTRCVDELTYYLKASGRTRDTNT
Ga0193605_11810191	3300018984	Soil	MDIDVIEKAIKTSLEETLKRTRRADEELEKAQQGGRGVGNPKLVEALEEYTRCVDELTYYLKASGRNRDTNQPEGPIHRTS
Ga0193605_12475171	3300018984	Soil	MDIDVIEKAIKASLEETLKRTRRAEEELKKAEQGGRSVGNPKLAEALEEYTRCVDELTYYLKASDQNRDANT
Ga0193592_10331171	3300019124	Soil	MSGRRVAMDIDVIEKAIKASLEETLKRTRRADEELNKAQQGGRGVGNPELVEALEEYTRCVDELTYYLKASGRNRHTHQSEGPIHRTS
Ga0193592_10600051	3300019124	Soil	TKTSGRRVAMDIDVIEKAIKTSLEETLKRTRRAEEELEKAQQGGRSVGNPKLAEALEEYTRCVDELTYYLKASGRNRDTKA
Ga0193602_10803442	3300019135	Soil	MDIDFVEKAIKASLEETLKRTRRADEELNKAQQGGRGVGNPELVEALEEYTRCVDELTYYLKASSRNR
Ga0193602_11170501	3300019135	Soil	GSRRKVAMDIDVVERAIKSSVEEAVKRMREAQAQLTKAQQGGRAGERNSALAEALEEYNRCLAELTYYLKASSQQGNTDA
Ga0190264_123257281	3300019377	Soil	MDIDFVEKAIKASLEETLKRTRRADEELKKAQQGGRGVGNPELVEALEEYTRCVDELTYYLKASGRNRDTHA
Ga0334930_079156_350_577	3300034005	Sub-Biocrust Soil	VVVHEKGAETKGGAVDIDILERAIKSSLEEALKRMRDADAELTKAQQGGRAERNLKLAEALEEYNRCVAELTYYLK
Ga0334936_011295_1744_1989	3300034007	Biocrust	MKMSGRRVAMDIDVIEKAIKASLEEALKRMRRADEGLKKAQQGGRGGGNPKLAEALEEYTRCVAELTYYLKASGRNRDTDA
Ga0334936_022365_1068_1286	3300034007	Biocrust	MDIDVLERAIKASLEEALKRMRDADAELTKAQQGGRAERDLKLAEALEEYNRCVAELTYYLKASGRHRDTDA
Ga0334936_092862_293_562	3300034007	Biocrust	VVVHEKGAETKGGAVDIDILERAIKSSLEEALKRMRDADAELTKAQQGGRAERNLKLAEALEEYNRCVAELTYYLKASETSGGRRDTDA
Ga0334936_096269_156_374	3300034007	Biocrust	MDIDVLERAIKASLEEALKRMRDADAELTKAQQGGRGERNLKLAEALEEYNRCVAELTYYLKASGRHRDTDA
Ga0334936_109007_223_441	3300034007	Biocrust	MDIDVIEKAIKAALEEALQRTRRADEELKKAQQGGRGVGNPKLVEALEEYTRCVDRLTYYLKASGRNRDTKT
Ga0334915_043639_407_625	3300034132	Hypolithic Biocrust	MDIDVLERAIKASLEEALKRMRDADEELTKAQQGGRGERNLKLAEALEEYNRCVAELTYYLKASGRHRDTDA
Ga0334929_059300_448_675	3300034135	Hypolithic Biocrust	MDIDVLERAIKASLEEALKRMRDADEELTKAQQGGRGERNLKLAEALEEYNRCVAELTYYLKASRDPSQHRDTDA
Ga0334925_021011_203_463	3300034173	Hypolithic Biocrust	VVVHEKGAETKGGAVDIDILERAIKSSLEEALKRMRDADAELTKAQQGGRAERNLKLAEALEEYNRCVAELTYYLKASGRHRDTDA
Ga0334925_131139_3_221	3300034173	Hypolithic Biocrust	VDLDVLERAIKSSLEEALKRMRDADAALTKAQQAGRGERNPKLAEALEEYSRCVAELTYYLKASNRQRGTDA
Ga0334935_147829_225_443	3300034781	Biocrust	MDIDVIEKAIKSSLEETLQRTRRAEEELKKAQQGGRGVGNPKLVEALEEYARCVDELTYYLKASGRNRDTNA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters