Metagenome Family F094888

Overview

Basic Information

• Family ID: F094888
• Family Type: Metagenome
• Number of Sequences: 105
• Average Sequence Length: 67 residues
• Representative Sequence: MFNKRKQFKSKKRFDKKGEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKD
• Number of Associated Samples: 66
• Number of Associated Scaffolds: 105

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 1.90 %
• % of genes near scaffold ends (potentially truncated): 25.71 %
• % of genes from short scaffolds (< 2000 bps): 76.19 %
• Associated GOLD sequencing projects: 58
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (95.238 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (32.381 % of family members)
• Environment Ontology (ENVO): Unclassified (87.619 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (87.619 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 22.68%
  β-sheet: 0.00%
  Coil/Unstructured: 77.32%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF01883	FeS_assembly_P	34.29
PF03239	FTR1	24.76
PF00574	CLP_protease	3.81
PF13578	Methyltransf_24	3.81
PF13186	SPASM	2.86
PF13609	Porin_4	0.95
PF10263	SprT-like	0.95
PF04055	Radical_SAM	0.95
PF03480	DctP	0.95
PF04724	Glyco_transf_17	0.95
PF05996	Fe_bilin_red	0.95
PF05118	Asp_Arg_Hydrox	0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	7.62
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	7.62
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	3.81
COG3555	Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily	Posttranslational modification, protein turnover, chaperones [O]	0.95

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.24 %
All Organisms	root	All Organisms	4.76 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.24 %
cellular organisms	root	All Organisms → cellular organisms	2.86 %
Viruses	superkingdom	All Organisms → Viruses	1.90 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.24 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.86 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	1.90 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.24 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.95 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.24 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	1.90 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.95 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.24 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.24 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	1.90 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples	0.95 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.24 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.90 %
uncultured delta proteobacterium HF4000_08N17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium HF4000_08N17	0.95 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001968|GOS2236_1056731	Not Available	1116
3300002408|B570J29032_109497710	Not Available	812
3300003986|Ga0063233_10101262	Not Available	850
3300004125|Ga0066182_10185741	Not Available	522
3300004240|Ga0007787_10377856	Not Available	705
3300004240|Ga0007787_10495296	Not Available	611
3300005582|Ga0049080_10111804	Not Available	926
3300005583|Ga0049085_10246780	Not Available	586
3300005584|Ga0049082_10158301	Not Available	784
3300005584|Ga0049082_10221382	Not Available	644
3300005585|Ga0049084_10288764	Not Available	546
3300008117|Ga0114351_1049423	Not Available	2634
3300008448|Ga0114876_1002979	Not Available	11615
3300008448|Ga0114876_1023098	Not Available	3181
3300009068|Ga0114973_10000190	Not Available	43378
3300009068|Ga0114973_10319612	Not Available	824
3300009068|Ga0114973_10589438	Not Available	571
3300009152|Ga0114980_10001146	Not Available	19044
3300009152|Ga0114980_10006027	Not Available	7986
3300009152|Ga0114980_10234788	Not Available	1073
3300009152|Ga0114980_10402534	Not Available	785
3300009154|Ga0114963_10005463	Not Available	8728
3300009155|Ga0114968_10005942	Not Available	9028
3300009155|Ga0114968_10010549	Not Available	6630
3300009159|Ga0114978_10001227	Not Available	21663
3300009159|Ga0114978_10014468	Not Available	5968
3300009159|Ga0114978_10452899	Not Available	760
3300009161|Ga0114966_10589606	Not Available	621
3300009183|Ga0114974_10628048	Not Available	590
3300009184|Ga0114976_10292110	Not Available	874
3300010354|Ga0129333_10000581	Not Available	30552
3300010354|Ga0129333_11101950	Not Available	663
3300010354|Ga0129333_11361983	Not Available	585
3300010885|Ga0133913_12056797	Not Available	1416
3300010885|Ga0133913_12181646	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1367
3300010885|Ga0133913_12433097	Not Available	1279
3300011010|Ga0139557_1075451	Not Available	562
3300011011|Ga0139556_1034585	Not Available	742
3300012666|Ga0157498_1067488	Not Available	551
3300013004|Ga0164293_10099695	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2232
3300013005|Ga0164292_10288186	Not Available	1128
3300013005|Ga0164292_10993414	Not Available	524
(restricted) 3300013126|Ga0172367_10176516	Not Available	1374
(restricted) 3300013126|Ga0172367_10234907	Not Available	1125
(restricted) 3300013131|Ga0172373_10034582	Not Available	4744
(restricted) 3300013131|Ga0172373_10223527	Not Available	1262
(restricted) 3300013131|Ga0172373_10338056	Not Available	957
(restricted) 3300013132|Ga0172372_10224170	Not Available	1401
3300017701|Ga0181364_1063059	Not Available	571
3300017722|Ga0181347_1164985	Not Available	598
3300017722|Ga0181347_1180733	Not Available	563
3300017723|Ga0181362_1066305	Not Available	736
3300017777|Ga0181357_1078617	All Organisms → cellular organisms → Bacteria	1263
3300017778|Ga0181349_1004971	Not Available	5627
3300017778|Ga0181349_1296241	Not Available	526
3300017784|Ga0181348_1185807	Not Available	755
3300017785|Ga0181355_1235281	Not Available	707
3300017788|Ga0169931_10020021	Not Available	8578
3300019093|Ga0187843_10238841	Not Available	758
3300019784|Ga0181359_1048061	Not Available	1648
3300020151|Ga0211736_10440072	Not Available	1078
3300020151|Ga0211736_10961328	Not Available	3397
3300020159|Ga0211734_11157748	Not Available	704
3300020161|Ga0211726_11061388	Not Available	1854
3300020162|Ga0211735_11327061	Not Available	1195
3300020172|Ga0211729_10634294	Not Available	943
3300020172|Ga0211729_10752546	Not Available	923
3300020172|Ga0211729_11295273	Not Available	798
3300020172|Ga0211729_11385051	Not Available	716
3300020205|Ga0211731_10167889	Not Available	770
3300021424|Ga0194117_10240978	Not Available	875
3300021963|Ga0222712_10188380	Not Available	1361
3300022179|Ga0181353_1045952	Not Available	1150
3300022179|Ga0181353_1051206	Not Available	1081
3300022190|Ga0181354_1126675	Not Available	817
3300023184|Ga0214919_10288486	Not Available	1142
3300027608|Ga0208974_1027860	Not Available	1718
3300027608|Ga0208974_1055820	Not Available	1123
3300027608|Ga0208974_1118814	Not Available	692
3300027734|Ga0209087_1058230	Not Available	1739
3300027734|Ga0209087_1240806	Not Available	672
3300027736|Ga0209190_1027575	Not Available	3090
3300027741|Ga0209085_1010992	Not Available	4535
3300027759|Ga0209296_1042349	Not Available	2425
3300027760|Ga0209598_10085238	Not Available	1520
3300027760|Ga0209598_10234372	Not Available	753
3300027770|Ga0209086_10073755	Not Available	1820
3300027770|Ga0209086_10140571	All Organisms → cellular organisms → Bacteria	1180
3300027770|Ga0209086_10282567	Not Available	717
3300027782|Ga0209500_10001164	Not Available	20504
3300027782|Ga0209500_10004489	Not Available	9220
3300027782|Ga0209500_10167751	Not Available	1017
3300027782|Ga0209500_10343453	Not Available	618
3300027804|Ga0209358_10031878	Not Available	3235
3300027804|Ga0209358_10209525	Not Available	1003
3300027963|Ga0209400_1014060	Not Available	4924
(restricted) 3300027977|Ga0247834_1089522	Not Available	1418
3300031857|Ga0315909_10073877	Not Available	3038
3300031857|Ga0315909_10294714	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → environmental samples → uncultured delta proteobacterium HF4000_08N17	1216
3300031963|Ga0315901_10871458	Not Available	644
3300034062|Ga0334995_0249441	Not Available	1197
3300034102|Ga0335029_0135327	Not Available	1702
3300034102|Ga0335029_0377325	Not Available	865
3300034102|Ga0335029_0680026	Not Available	562
3300034284|Ga0335013_0800485	Not Available	527

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	95.24%
Marine	Environmental → Aquatic → Marine	4.76%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	64.76%
Lentic	Environmental → Aquatic → Freshwater → Lentic	26.67%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	2.86%
Coastal	Environmental → Aquatic → Marine → Coastal	2.86%
Ice	Environmental → Aquatic → Freshwater → Ice	0.95%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.95%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.95%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	64.76%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	26.67%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	2.86%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.86%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.95%

Habitat

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	32.38%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	18.10%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	16.19%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	11.43%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	7.62%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.86%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.86%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	2.86%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.95%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.95%
Freshwater, Surface Ice	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice	0.95%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	0.95%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.95%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.95%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300001968	Marine microbial communities from Lake Gatun, Panama - GS020	Environmental
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental
3300003986	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN (v2)	Environmental
3300004125	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (version 2)	Environmental
3300004240	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN	Environmental
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental
3300005583	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF	Environmental
3300005584	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF	Environmental
3300005585	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF	Environmental
3300008117	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA	Environmental
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental
3300009068	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG	Environmental
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental
3300009154	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG	Environmental
3300009155	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG	Environmental
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental
3300009161	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG	Environmental
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental
3300009184	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG	Environmental
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental
3300010885	northern Canada Lakes Co-assembly	Environmental
3300011010	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice	Environmental
3300011011	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Top - Depth 1m	Environmental
3300012666	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2	Environmental
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental
3300013126 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m	Environmental
3300013131 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m	Environmental
3300013132 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5m	Environmental
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental
3300017722	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N	Environmental
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental
3300017788	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L	Environmental
3300019093	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43	Environmental
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental
3300020159	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1	Environmental
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental
3300020162	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1	Environmental
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental
3300020205	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1	Environmental
3300021424	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surface	Environmental
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental
3300022179	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N	Environmental
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental
3300023184	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503	Environmental
3300027608	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)	Environmental
3300027734	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)	Environmental
3300027736	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)	Environmental
3300027741	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)	Environmental
3300027759	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)	Environmental
3300027760	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)	Environmental
3300027770	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)	Environmental
3300027782	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)	Environmental
3300027804	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)	Environmental
3300027963	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)	Environmental
3300027977 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12m	Environmental
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental
3300034102	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112	Environmental
3300034284	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GOS2236_10567313	3300001968	Marine	MFKKNKRRHRDNKSRNFHGNSTYDSKLHHRSNGSSGYGMKRGVEQDPAELHGSQLQGMLDKWNSRD*
B570J29032_1094977102	3300002408	Freshwater	MFNKRKQFKSKKRFDKKGEHDSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSQLQGMLDKWNSKN*
Ga0063233_101012622	3300003986	Freshwater Lake	MFNKRKQFKSKKKFDKKGEHNSSSTFDSKVHHKGNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKN*
Ga0066182_101857411	3300004125	Freshwater Lake	MFNKRKQFKNKKRFDKKHEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKD*
Ga0007787_103778561	3300004240	Freshwater Lake	MFNKKKQFKKKKNFNNNSTFDSKVHHRSNHSSGYGLKRGVDQDPAELHGSQLQGMLDKWN
Ga0007787_104952961	3300004240	Freshwater Lake	KRYKNKKNKDNNITSTFDSKLHHKSNRSSGYGMKHGVEQDPLELHGSQLQGMLDKWNSKN
Ga0049080_101118042	3300005582	Freshwater Lentic	MFNKRKQFKNKKRFDKKHEHNSSSTFDSKVHHRSNGSSGYGLKRGVEQDPAELHGSSLQGMLDKWNSKD*
Ga0049085_102467802	3300005583	Freshwater Lentic	MFNKRKQFKSKKRFDKKSEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSQLEGMLNKWNSKD*
Ga0049082_101583013	3300005584	Freshwater Lentic	MFNKRKQFKNKKRFDKKHEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSQLEGMLNKWNSKD*
Ga0049082_102213822	3300005584	Freshwater Lentic	MFNKRKRFKSKKRFDKKGEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKN*
Ga0049084_102887641	3300005585	Freshwater Lentic	MFNKRKQFKSKKRFDKKVEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSS
Ga0114351_10494232	3300008117	Freshwater, Plankton	MFKKNKKRFKNNNKNSNITSTFDSKLHHKSNRSSGYGLKHGVEQDPAELHGSQLEGMLNKWNSKD*
Ga0114876_10029793	3300008448	Freshwater Lake	MFNKRKQFKNKKRFDKKHEHNSSSTFDSKVHHRSNRSSGYGMKHGLEQDPAELHGSQLQGMLDKWNSKD*
Ga0114876_10230988	3300008448	Freshwater Lake	MFNKRKQFKNKKRFNKKDEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSQLEGMLNKWNSKD*
Ga0114973_1000019028	3300009068	Freshwater Lake	MFNKKKKFKKNKNFNGSSTYDSKLHHRSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKD*
Ga0114973_103196122	3300009068	Freshwater Lake	MFNKRKQFKSKKRFDKKSEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKN*
Ga0114973_105894382	3300009068	Freshwater Lake	MFNKRKKFKSKKRFDKRGEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSK
Ga0114980_1000114610	3300009152	Freshwater Lake	MFNKRKKFKSKKRFNKKGEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPSELHGSSLQGMLDKWNSKN*
Ga0114980_100060274	3300009152	Freshwater Lake	MFKKNKKRFKNNNKNSNITSTFDSKLHHKSNRSSGYGLKHGVEQDPAELHGSQLQGMLDKWNSKD*
Ga0114980_102347882	3300009152	Freshwater Lake	MFNKRKRFKSKKRFDKKGEHDSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKN*
Ga0114980_104025343	3300009152	Freshwater Lake	MFNKRKQFKNKKKFDKKGEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKN*
Ga0114963_100054637	3300009154	Freshwater Lake	MYDKNKRKKFKKKKNSNDNNSTYDSKLHHRSNRSSGYGMKHGVGQDPAELHGSQLAGMLDKWNSKN*
Ga0114968_1000594214	3300009155	Freshwater Lake	MFNKRKQFKSKKRFDKKGEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKD*
Ga0114968_1001054910	3300009155	Freshwater Lake	MFNKRKKFKSKKRFDKRGEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKD*
Ga0114978_1000122721	3300009159	Freshwater Lake	MFNKRKRFKSKKRFDKKSEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPSELHGSSLQGMLDKWNSKN*
Ga0114978_100144683	3300009159	Freshwater Lake	MFNKRKRFKSKKKFDKKGEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNNKN*
Ga0114978_104528993	3300009159	Freshwater Lake	MFNKRKQFKSKKRFDKKGEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKD*
Ga0114966_105896061	3300009161	Freshwater Lake	MFNKRKQFKSKKRFDKKNEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQCMLDKWNSKD*
Ga0114974_106280482	3300009183	Freshwater Lake	MFNKRKRFKSKKRFDKKSEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKN*
Ga0114976_102921103	3300009184	Freshwater Lake	MFNKRKRFKSKKRFDKKDEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKD*
Ga0129333_1000058124	3300010354	Freshwater To Marine Saline Gradient	MFKKNKKRHKNNRNKNRDISSTFDSKLHHRSKRSSGYGLKHGVEQDPAELHGSQLQGMLDKWNSKD*
Ga0129333_111019503	3300010354	Freshwater To Marine Saline Gradient	MFKKNKKRYKKNKDNTGSTFDSKLHHRSNRSSGYGMKHGVEQDPAELHGSQLQGMLDKWNSKN*
Ga0129333_113619832	3300010354	Freshwater To Marine Saline Gradient	MFKKNKKRHKNKKNRNVSSTFDSKLHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKD*
Ga0133913_120567972	3300010885	Freshwater Lake	MFNKRKQFKSKKRFNKKNEHNSSSTFDSKVHHRSNRSSGYGMKHGVEQDPAELHGSQLEGMLNKWNSKD*
Ga0133913_121816463	3300010885	Freshwater Lake	MFNKRKRFKGKKRFDKKVEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPSELHGSSLQGMLDKWNSKN*
Ga0133913_124330973	3300010885	Freshwater Lake	MFNKRKRFKGKKRVDKKVEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKD*
Ga0139557_10754511	3300011010	Freshwater	NKRKQFKSKKRFDKKSEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKD*
Ga0139556_10345851	3300011011	Freshwater	MFNKRKQFKSKKRFDKKVEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKN*
Ga0157498_10674881	3300012666	Freshwater, Surface Ice	MFNKRKQFKNKKKFSNSNHSHSSNGAGSTFDSKVHHKSNHSSGYGLKRGVEQDPAELHGSSLQGMLDKWNSKD*
Ga0164293_100996953	3300013004	Freshwater	MFNKRKRFKSKKKFDKKSEHDSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKD*
Ga0164292_102881863	3300013005	Freshwater	MFNKRKRFKSKKRFDKKDEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKN*
Ga0164292_109934141	3300013005	Freshwater	MFNKRKQFKNKKRFDKKNEHNSRSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKN*
(restricted) Ga0172367_101765164	3300013126	Freshwater	MFNKRKRSKHKKKFNGKPSHNNGASTYDSKLHHRSNGSSGYGLKRGVEQDPAELHGSQLQGMLDKWNSKN*
(restricted) Ga0172367_102349073	3300013126	Freshwater	KFNGKSSHNNGTSTFDSKLHHRSNGSSGYGLKRGVEQDPAELHGSSLQGLLDKWNIKN*
(restricted) Ga0172373_100345829	3300013131	Freshwater	MYNKKKRFKHKKKFNGKPSHNNGTSTFDSKLHHRSNRSSGYGLKRGVEQDPAELHGSSLQGMLDKWNIKN*
(restricted) Ga0172373_102235273	3300013131	Freshwater	MFNKRKKFKHKKKFNANGNHHQGKDTFDPKIHHRSKGSSGYGLKRDHVSTVEETSGAQLQGMLDKWNSKS*
(restricted) Ga0172373_103380563	3300013131	Freshwater	MFNKKKRFKHKKKFNGKPSHNNGTSTFDSKLHHRSNRSSGYGLKRGVEQDPAELHGSSLRGMLDKWKIKD*
(restricted) Ga0172372_102241703	3300013132	Freshwater	MYNKKKRFKHKKKFNGKPSHNNGTSTFDSKLHHRSNGSSGYGLKRGVEQDPAELHGSSLRGMLDKWNIKN*
Ga0181364_10630591	3300017701	Freshwater Lake	KQFKSKKRFDKKGELNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKD
Ga0181347_11649852	3300017722	Freshwater Lake	MFNKRKQFKSKKRFDKKVEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKN
Ga0181347_11807331	3300017722	Freshwater Lake	MFNKRKRFKSKKRFDKTVEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKN
Ga0181362_10663052	3300017723	Freshwater Lake	MFNKRKQFKNKKRFDKKVEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSQLEGMLNKWNSKD
Ga0181357_10786172	3300017777	Freshwater Lake	MFNKRKQFKNKKRFDKKGEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSQLEGMLNKWNSKD
Ga0181349_100497110	3300017778	Freshwater Lake	MFNKRKQFKSKKRFDKKGELNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSQLEG
Ga0181349_12962411	3300017778	Freshwater Lake	RFDKKVEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKG
Ga0181348_11858072	3300017784	Freshwater Lake	MFNKRKQFKSKKRFDKKVEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLRGMLDKWNSKD
Ga0181355_12352812	3300017785	Freshwater Lake	MFNKRKQFKNKKRFDKKGEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKD
Ga0169931_1002002112	3300017788	Freshwater	MYNKKKRFKHKKKFNGKPSHNNGTSTFDSKLHHRSNGSSGYGLKRGVEQDPAELHGSSLRGMLDKWNIKN
Ga0187843_102388412	3300019093	Freshwater	MFNKRKQFKSKKKFDKKGEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKN
Ga0181359_10480614	3300019784	Freshwater Lake	MFNKRKQFKSKKRFDKKGELNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKD
Ga0211736_104400721	3300020151	Freshwater	NRKRFDKKSEHDSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKD
Ga0211736_109613286	3300020151	Freshwater	MFNKRKKFKHKKKFNGKNNHKHGSSTFDSRVHHRGNGSSGYGLKRGVEQDPAELHGSRLQGMLDKWNSKD
Ga0211734_111577482	3300020159	Freshwater	MFNKRKQFKNKKRFDKKSEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSQLEGILNKWNSKD
Ga0211726_110613881	3300020161	Freshwater	RKQFKSKKRFDKKGEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKD
Ga0211735_113270612	3300020162	Freshwater	MFNKRKQFKSKKRFDKKSEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKD
Ga0211729_106342941	3300020172	Freshwater	MFNKRKRFKGKKRFDKKSEYNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKD
Ga0211729_107525463	3300020172	Freshwater	MFNKRKKFKSKKRFNKKGEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPSELHGSSLQGMLDKWNSKN
Ga0211729_112952731	3300020172	Freshwater	MFNKRKQFKNKKRFNKKDEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKN
Ga0211729_113850512	3300020172	Freshwater	MFNKRKKFKHKKKFNGKNNHKHGSSTFDSRVHHRGNGSSGYGLKRGVEQDPAELHGSRLQGM
Ga0211731_101678892	3300020205	Freshwater	MFNKRKQFKSKKRFDKKDEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKN
Ga0194117_102409781	3300021424	Freshwater Lake	MFNKRKKFKHKKKFNGKNNHGNSTYDSKLHHRSNGSSGYGLKRGVEQDPAELHGSSLRGLLDKWNIKN
Ga0222712_101883802	3300021963	Estuarine Water	MFNKRKKFKHKKKFNGKNNHNHGSSTFDSKVHHRSNGSSGYGLKRGMEQDPAELHGSQLQGMLDKWNSKN
Ga0181353_10459524	3300022179	Freshwater Lake	MFKKNKKRFKNNKNKNSNITSTFDSKIHHKSNRSSGYGLKHGVEQDPAELHGSQLQGMLDKWNSKN
Ga0181353_10512061	3300022179	Freshwater Lake	MFSKRKKFKNKKRFDKKHEHNSSSTFDSKVHHRSNRSSGYGMKHGVEQDPAELHGSQLEGMLDKWNSK
Ga0181354_11266751	3300022190	Freshwater Lake	NKRKQFKNKKRFDKKGEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSQLEGMLNKWNSKD
Ga0214919_102884861	3300023184	Freshwater	MFNKRKKFKSKKRFNKKGEHNSSSTFDSKVHHKSNRSSGYGMKHGIEQDPSELHGSQLQGMLDKWNSKN
Ga0208974_10278604	3300027608	Freshwater Lentic	MFNKRKKFKHKKKFNGKNNHKHGSSTFDSKVHHRGNGSSGYGLKRGVEQDPAELHGSRLQGMLDKWNSKD
Ga0208974_10558201	3300027608	Freshwater Lentic	MFNKRKQFKSKKRFDKKVEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKD
Ga0208974_11188142	3300027608	Freshwater Lentic	MFNKRKQFKNKKRFDKKHEHNSSSTFDSKVHHRSNGSSGYGLKRGVEQDPAELHGSSLQGMLDKWNSKD
Ga0209087_10582305	3300027734	Freshwater Lake	MFKKNKKRFKNNNKNSNITSTFDSKLHHKSNRSSGYGLKHGVEQDPAELHGSQLQGMLDKWNSKD
Ga0209087_12408062	3300027734	Freshwater Lake	MFNKRKQFKNKKKFDKKGEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKN
Ga0209190_10275751	3300027736	Freshwater Lake	MFNKRKQFKSKKRFDKKSEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQ
Ga0209085_10109929	3300027741	Freshwater Lake	MYDKNKRKKFKKKKNSNDNNSTYDSKLHHRSNRSSGYGMKHGVGQDPAELHGSQLAGMLDKWNSKN
Ga0209296_10423492	3300027759	Freshwater Lake	MFNKRKRFKSKKKFDKKGEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNNKN
Ga0209598_100852382	3300027760	Freshwater Lake	MFNKKKKFKKNKNFNGSSTYDSKLHHRSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKD
Ga0209598_102343722	3300027760	Freshwater Lake	MFNKRKQFKNKKRFDKKHEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSQLEGMLNKWNSKD
Ga0209086_100737555	3300027770	Freshwater Lake	MFNKRKQFKSKKRFNKKNEHNSSSTFDSKVHHRSNRSSGYGMKHGVEQDPAELHGSQLEGMLNKWNSKD
Ga0209086_101405711	3300027770	Freshwater Lake	MFNKRKKFKSKKRFDKRGEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKD
Ga0209086_102825672	3300027770	Freshwater Lake	MFNKRKQFKSKKRFDKKNEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKN
Ga0209500_1000116413	3300027782	Freshwater Lake	MFNKRKRFKSKKRFDKKSEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPSELHGSSLQGMLDKWNSKN
Ga0209500_100044893	3300027782	Freshwater Lake	LTESQPVLQLQREMFNKRKRFKSKKKFDKKDEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKN
Ga0209500_101677512	3300027782	Freshwater Lake	MFNKRKQFKSKKRFDKKGEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKD
Ga0209500_103434531	3300027782	Freshwater Lake	FKNKKKFDKKGEHNSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKN
Ga0209358_100318786	3300027804	Freshwater Lake	MFNKKKQFKKKKNFNNNSTFDSKVHHRSNHSSGYGLKRGVDQDPAELHGSQLQGMLDKWNSKD
Ga0209358_102095251	3300027804	Freshwater Lake	MFSKRKKFKNKKRFDKKHEHNSSSTFDSKVHHRSNRSSGYGMKHGVEQDPAELHGSQLQGMLDKWNS
Ga0209400_10140603	3300027963	Freshwater Lake	MFNKRKQFKSKKRFDKKSEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKN
(restricted) Ga0247834_10895225	3300027977	Freshwater	NKRKKFKHKKKFNGNREHKQGTSTFDRKVHHRSNGSSGYGLKRGVEQDPAELHGSSLQGMLDKWNSKS
Ga0315909_100738772	3300031857	Freshwater	MFNKRKQFKNKKRFNKKDEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSQLEGMLNKWNSKD
Ga0315909_102947141	3300031857	Freshwater	KRKQFKNKKRFDKKHEHNSSSTFDSKVHHRSNRSSGYGMKHGLEQDPAELHGSQLQGMLDKWNSKD
Ga0315901_108714582	3300031963	Freshwater	EMFNKRKQFKNKKRFNKKDEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSQLEGMLNKWNSKD
Ga0334995_0249441_1_204	3300034062	Freshwater	MFNKRKQFKNKKRVDNKVEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSK
Ga0335029_0135327_720_929	3300034102	Freshwater	MFNKRKQFKNKKRFDKKHEHNSSSTFDSKVHHRSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKN
Ga0335029_0377325_278_487	3300034102	Freshwater	MFNKRKKFKSKKRFDKRSEHNSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSSLQGMLDKWNSKN
Ga0335029_0680026_385_561	3300034102	Freshwater	MFNKRKQFKNKKRFNRKSEQDSSSTFDSKVHHKSNRSSGYGMKHGVEQDPAELHGSQLE
Ga0335013_0800485_56_265	3300034284	Freshwater	MFNKRKRFKSKKKFDKKSEHDSSSTFDSKVHHKSNRSSGYGLKHGVEQDPAELHGSSLQGMLDKWNSKD