Metagenome / Metatranscriptome Family F094882

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094882
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	53 residues
Representative Sequence	MSDLYMEVEQMLAEGEHPSRIARRLGIPLSMVYDVLESMPADDEIATEVGEIG
Number of Associated Samples	74
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	42.86 %
% of genes near scaffold ends (potentially truncated)	12.38 %
% of genes from short scaffolds (< 2000 bps)	69.52 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (66.667 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (50.476 % of family members)
Environment Ontology (ENVO)	Unclassified (89.524 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (96.190 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64 1JGI25926J51410_10409711 2JGI25924J51412_10103972 3JGI25923J51411_10779892 4Ga0065167_10527352 5Ga0007791_101982101 6Ga0007794_101622312 7Ga0007794_102653422 8Ga0007798_101494951 9Ga0007800_101264772 10Ga0007758_113335111 11Ga0007792_101786723 12Ga0070374_103880433 13Ga0114364_10224677 14Ga0102831_12152562 15Ga0114973_100022657 16Ga0114973_100445403 17Ga0114973_101182383 18Ga0114962_100266123 19Ga0114962_102064982 20Ga0114980_100571311 21Ga0114963_100259643 22Ga0114963_102374783 23Ga0114963_107387471 24Ga0114977_100060613 25Ga0114977_102412282 26Ga0114977_104872851 27Ga0114978_100442333 28Ga0114978_106010311 29Ga0114981_106484562 30Ga0114970_105084423 31Ga0114975_100091893 32Ga0114975_101614541 33Ga0114975_105477442 34Ga0114979_107629451 35Ga0114969_100741302 36Ga0114959_103888121 37Ga0114974_104517453 38Ga0114958_103234803 39Ga0114964_101936122 40Ga0114960_105962412 41Ga0114967_100727412 42Ga0114967_103547091 43Ga0136644_103268192 44Ga0133913_101634441 45Ga0133913_104885202 46Ga0133913_127771032 47Ga0139557_10014252 48Ga0153698_100621 49Ga0164294_1000877511 50Ga0164294_100221295 51Ga0164294_105711153 52Ga0164295_100212773 53Ga0170791_129238351 54Ga0181338_10290603 55Ga0181364_10626641 56Ga0181362_11014911 57Ga0181344_10395772 58Ga0181356_11958711 59Ga0181356_12114401 60Ga0181358_10385302 61Ga0181358_11995171 62Ga0181357_12940602 63Ga0187843_100435043 64Ga0181361_1219681 65Ga0181359_10087854 66Ga0181359_10252073 67Ga0181359_10442872 68Ga0181354_10828783 69Ga0181354_12501031 70Ga0181351_11324192 71Ga0214917_101434562 72Ga0214921_103564593 73Ga0214923_104968041 74Ga0214919_1000555915 75Ga0214919_103384242 76Ga0214919_103850922 77Ga0244775_108297211 78Ga0208495_10680791 79Ga0208864_10947092 80Ga0208916_104427772 81Ga0209553_11109752 82Ga0209188_10101583 83Ga0209188_10405855 84Ga0209499_11181003 85Ga0209297_100148310 86Ga0209087_10346942 87Ga0209087_10661962 88Ga0209087_12596422 89Ga0209190_12164062 90Ga0209085_10449176 91Ga0209189_12471042 92Ga0209084_12803131 93Ga0209296_12366793 94Ga0209088_100076112 95Ga0209088_100241373 96Ga0209500_100298503 97Ga0209354_101466131 98Ga0209354_102283633 99Ga0209191_10194041 100Ga0209191_10963402 101Ga0209191_11355142 102Ga0209401_10287503 103Ga0209401_11777361 104Ga0209298_101479933 105Ga0315905_111454441
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64 1JGI25926J51410_10409711 2Ga0007794_101622312 3Ga0114967_100727412 4Ga0114967_103547091
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64 1JGI25926J51410_10409711 2Ga0007794_101622312 3Ga0114967_100727412 4Ga0114967_103547091
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 69.81% β-sheet: 0.00% Coil/Unstructured: 30.19%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF13609	Porin_4	17.14
PF04055	Radical_SAM	3.81
PF02310	B12-binding	3.81
PF14743	DNA_ligase_OB_2	1.90
PF00462	Glutaredoxin	1.90
PF05488	PAAR_motif	0.95
PF10504	DUF2452	0.95
PF02867	Ribonuc_red_lgC	0.95

Showing 1 to 8 of 8 entries

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COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	0.95
COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	Intracellular trafficking, secretion, and vesicular transport [U]	0.95

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	33.33 %
Unclassified	root	N/A	66.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	14.29 %
Unclassified	root	N/A	66.67 %
Viruses	superkingdom	All Organisms → Viruses	19.05 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	14.29 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	17.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.90 %
Unclassified	root	N/A	66.67 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	9.52 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	17.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.90 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.90 %
Unclassified	root	N/A	66.67 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	9.52 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.90 %
Unclassified	root	N/A	66.67 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	17.14 %

Name	Rank	Taxonomy	Distribution
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1.90 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	17.14 %
Legionellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales	0.95 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	9.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.90 %
Unclassified	root	N/A	66.67 %

Name	Rank	Taxonomy	Distribution
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1.90 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	16.19 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	9.52 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.90 %
Unclassified	root	N/A	66.67 %
unclassified Legionellales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales	0.95 %

Name	Rank	Taxonomy	Distribution
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	1.90 %
Candidatus Parcubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria	9.52 %
Legionellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.90 %
Unclassified	root	N/A	66.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	16.19 %

Name	Rank	Taxonomy	Distribution
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	1.90 %
Legionellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.90 %
Unclassified	root	N/A	66.67 %
unclassified Parcubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria	9.52 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	16.19 %

Name	Rank	Taxonomy	Distribution
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	1.90 %
Candidatus Parcubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	9.52 %
Legionellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.90 %
Unclassified	root	N/A	66.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	16.19 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003490\|JGI25926J51410_1040971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	829	Open in IMG/M
3300003491\|JGI25924J51412_1010397	All Organisms → cellular organisms → Bacteria	1749	Open in IMG/M
3300003493\|JGI25923J51411_1077989	Not Available	567	Open in IMG/M
3300004693\|Ga0065167_1052735	Not Available	673	Open in IMG/M
3300004772\|Ga0007791_10198210	Not Available	574	Open in IMG/M
3300004774\|Ga0007794_10162231	Not Available	668	Open in IMG/M
3300004774\|Ga0007794_10265342	Not Available	509	Open in IMG/M
3300004775\|Ga0007798_10149495	Not Available	534	Open in IMG/M
3300004776\|Ga0007800_10126477	Not Available	625	Open in IMG/M
3300004790\|Ga0007758_11333511	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1484	Open in IMG/M

Showing 1 to 10 of 105 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	97.14%
Marine	Environmental → Aquatic → Marine	2.86%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	0.95%
Ice	Environmental → Aquatic → Freshwater → Ice	0.95%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.95%
Lake	Environmental → Aquatic → Freshwater → Lake	62.86%
Lentic	Environmental → Aquatic → Freshwater → Lentic	31.43%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.95%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.95%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	62.86%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	31.43%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.95%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.95%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.95%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	9.52%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	8.57%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.90%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.95%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.95%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	0.95%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	50.48%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	22.86%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.95%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003490	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN	Environmental	Open in IMG/M
3300003491	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD	Environmental	Open in IMG/M
3300003493	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN	Environmental	Open in IMG/M
3300004693	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA7.5M (version 2)	Environmental	Open in IMG/M
3300004772	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M	Environmental	Open in IMG/M
3300004774	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M	Environmental	Open in IMG/M
3300004775	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA17M	Environmental	Open in IMG/M
3300004776	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA14M	Environmental	Open in IMG/M
3300004790	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004805	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA6M	Environmental	Open in IMG/M

Showing 1 to 10 of 74 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25926J51410_10409711	3300003490	Freshwater Lake	MSKMSDLYMEVEQMLAEGEHPSRIARRLGIPLSMVYDVLESMPADDEIATEVGEIG*
JGI25924J51412_10103972	3300003491	Freshwater Lake	MSKMSDLYMEVEQMLAEGEHPSRIARRLGIPVSMVYDVLESMPADDEIATEVGEID*
JGI25923J51411_10779892	3300003493	Freshwater Lake	MSKMSDLYMEVEQMLAEGEHPSRIARRLGIPLSMVYDVLESMPADDEIATEVGEIGPELFKLL
Ga0065167_10527352	3300004693	Freshwater	MSDLYMEVETMLNEGEHPSRIARRLGVPLSMVYDVLESMPADDEIATRVGEIGPLLFKLL
Ga0007791_101982101	3300004772	Freshwater	MSDLYMEVETMLNEGEHPARIARRLGIPLSTVYDVLESMPADDEIATGVGEIG*
Ga0007794_101622312	3300004774	Freshwater	MLAEGEHPARIARRLGIPLSTVYDVLESMPAEDEIVTSVGEIG*
Ga0007794_102653422	3300004774	Freshwater	MSKMSDLYMEVETMLNEGEHPARIARRLGIPLSTVYDVLESMPADDEIATGVGEIG*
Ga0007798_101494951	3300004775	Freshwater	MSKMSDLYMEVEQMLAEGEHPARIARRLGIPLSTVYDVLESMPADDEIATGVGEIG*
Ga0007800_101264772	3300004776	Freshwater	MSKMSDLYMEVETMLNEGEHPSRIARRLGVPLGMVYDVLESMPAEDEIATGVGEIGPLLPEML
Ga0007758_113335111	3300004790	Freshwater Lake	MSDLYMEVEQMLAEGENPSLIARRLGIPLSMVYDVLESMPAEDEIATEVGEIG*
Ga0007792_101786723	3300004805	Freshwater	YMEVETMLNEGEHPARIARRLGIPLSTVYDVLESMPADDEIATGVGEIG*
Ga0070374_103880433	3300005517	Freshwater Lake	MSDLYMEVEQMLAEGEHPSRIARRLGIPLSMVYDVLESMPADDEIATEVGE
Ga0114364_10224677	3300008267	Freshwater, Plankton	MEVEQMLAEGENPSRIARRLGIPLSMVYDVLESMPAEDEIATEVGEIG*
Ga0102831_12152562	3300008996	Estuarine	MEVEQMLAEGEHPARIARRLGVPLSMVYDVLESMPADDEIATEVGEIG*
Ga0114973_100022657	3300009068	Freshwater Lake	MSKMSDLYMEVETMLAEGEHPARIARRLGLPLGMVYDVLESMPAEDEVDQ*
Ga0114973_100445403	3300009068	Freshwater Lake	MSKMSDLYMEVEQMLAEGEHPSRIARRLGIPPSMVYDVLESMPAEDEIATGVGEIG*
Ga0114973_101182383	3300009068	Freshwater Lake	MEVEQMLAEGEHPSRIARRLGIPLSMVYDVLESMPAEDEIATEVGEIG*
Ga0114962_100266123	3300009151	Freshwater Lake	MSKMSDLYMEVETMLHEGEHPARIARRLGVPLSMVYDVLESMPADDEIATGVGEIG*
Ga0114962_102064982	3300009151	Freshwater Lake	MSKMSDLYMEVEIMLNEGEHPARIARRLGVPLSMVYDVLESMPADDEIATEVGEIG*
Ga0114980_100571311	3300009152	Freshwater Lake	MSKMSDLYMEVELMLAEGENPVRIARRLGIPLSMVYDVLESMPAEDEIATEIGEIG*
Ga0114963_100259643	3300009154	Freshwater Lake	MSKMSDLYMEVETMLAEGEHPARIARRLGIPLSMVYDVLESMPAHDEIATGVGEIG*
Ga0114963_102374783	3300009154	Freshwater Lake	MSKMSDLYMEVETMLNEGEHPARIARRLGVPLGMVYDVLESMPADDEIATEVGEIG*
Ga0114963_107387471	3300009154	Freshwater Lake	MSKMSDLYMEVETMLHEGEHPARIARRLGVPLSMVYDVLESMPADDEIATG
Ga0114977_100060613	3300009158	Freshwater Lake	MSKMSDLYMEIELMLEEGENPVRIARRLGIPLSMVYDVLESMPAEDEIATEVGEIG*
Ga0114977_102412282	3300009158	Freshwater Lake	MEVEQMLAEGEHPSRIARRLGIPVSMVYDVLESMPAEDEIATGVCEIG*
Ga0114977_104872851	3300009158	Freshwater Lake	MSKMSDLYMEVETMLNEGEHPARIARRLGVPLSMVYDVLESMPAEDEIATQVGEIG*
Ga0114978_100442333	3300009159	Freshwater Lake	MEVETMLHEGEHPARIARRLGVPLSMVYDVLESMPADDEIATEVGKIG*
Ga0114978_106010311	3300009159	Freshwater Lake	MEVEQMLAEGEHPSRIARRLGIPVSMVYDVLESMPAEDEIATGVGEIG
Ga0114981_106484562	3300009160	Freshwater Lake	MSKMSDLYMEVETMLHEGEHPARIARRLGVPLSMVYDVLESMPADDEIATEVGKIG*
Ga0114970_105084423	3300009163	Freshwater Lake	MEVELMLAEGEHPSRIARRLGIPLSMVYDVLESMPAEDEIATRVGEIG*
Ga0114975_100091893	3300009164	Freshwater Lake	MEVEQMLAEGEHPSRIARRLGIPVSMVYDVLESMPAEDEIATGVGEIG*
Ga0114975_101614541	3300009164	Freshwater Lake	MSKMSDLYMEVELMLSEGENPVRIARRLGIPLSMVYDVLESMPAEDEIATQVGEIG*
Ga0114975_105477442	3300009164	Freshwater Lake	MSKMSDLYMEVEQMLQEGEHPARIARRLGIPLSMVYDVLESMPAEEEIATEVGEIG*
Ga0114979_107629451	3300009180	Freshwater Lake	MSKMSDLYMEVEQMLAEGEHPSRIARRLGIPVSMVYDVLESMPAEDEIATGVGEIG*
Ga0114969_100741302	3300009181	Freshwater Lake	MSKMSDLYMEVELMLEEGEHPARIARRLGIPLSMVYDVLESMPAEDEIATEVGKIG*
Ga0114959_103888121	3300009182	Freshwater Lake	MSKMSDLYMEVETMLAEGEHPARIARRLGVPLSMVYDVLESMPADDEIATEVG
Ga0114974_104517453	3300009183	Freshwater Lake	MSKMSDLYMEVETMLNEGDHPSRIARRLGIPLGMVYDVLESMPADDEIATGVGEIG*
Ga0114958_103234803	3300009684	Freshwater Lake	MSKMSDLYMEVETMLAEGEHPARIARRLGVPLSMVYDVLESMPADDEIATEVGEIG*
Ga0114964_101936122	3300010157	Freshwater Lake	MEVETMLAEGEHPSRIARRLGVPLGMVYDVLESMPEDDEIATEVGKIG*
Ga0114960_105962412	3300010158	Freshwater Lake	MSKMSDLYMEVETMLAEGEHPARIARRLGVPLSMVYDVLESMPAEDEIATGVGKIG*
Ga0114967_100727412	3300010160	Freshwater Lake	MEVEQMLAEGEHPSRIARRLGLPLGMVYDVLESMPAEDEVDQ*
Ga0114967_103547091	3300010160	Freshwater Lake	PARIARRLGIPLSMVYDVLESMPAHDEIATGVGKIG*
Ga0136644_103268192	3300010334	Freshwater Lake	MEVEQMLAEGEHPSRIARRLGIPLSMVYDVLESMPAEDEIATGVGKIG*
Ga0133913_101634441	3300010885	Freshwater Lake	MEVELMLEEGEHPARIARRLGIPLSMVYDVLESMPAHDEIATGVGKIG*
Ga0133913_104885202	3300010885	Freshwater Lake	MEVEQMLQEGEHPARIARRLGIPLSMVYDVLESMPAEEEIATEVGEIG*
Ga0133913_127771032	3300010885	Freshwater Lake	MSKMSDLYMEVENMLAEGEHPARIARRLGIPLGMVYDVLESMPAHDEIATGVGEIG*
Ga0139557_10014252	3300011010	Freshwater	MSKMSDLYMEVEQMLAEGEHPSRIARRLGIPVSMVYDVLESMPADDEIATEVGEIG*
Ga0153698_100621	3300011335	Freshwater	MEVEQMLAEGEHPARIARRLGIPLSTVYDVLESMPEEDEIATGVGEFG*
Ga0164294_1000877511	3300013006	Freshwater	MSKMSDLYMEVEQMLAEGEHPSRIARRLGIPVGMVYDVLESMPAEDEIATEVGEIG*
Ga0164294_100221295	3300013006	Freshwater	MSKMSDLYMEVEQMLAEGEHPSRIARRLGIPLSMVYDVLESMPAEDEIATEVGKIG*
Ga0164294_105711153	3300013006	Freshwater	MSKMSDLYMEVELMLEEGEHPARIARRLGIPVSMVYDVLESMPAEDEIATGVGEIG*
Ga0164295_100212773	3300013014	Freshwater	MEVEQMLAEGEHPSRIARRLGIPVGMVYDVLESMPAEDEIATEVGEIG*
Ga0170791_129238351	3300013295	Freshwater	MSKMSDLYMEVETMLNEGEHPARIARRLGVPLSMVYDVLESMPADDEIATEVGEIG*
Ga0181338_10290603	3300015050	Freshwater Lake	MEVEQMLAEGENPSRIARRLGIPLNMVYDVLESMPADDEIATEVGEIG*
Ga0181364_10626641	3300017701	Freshwater Lake	MSKMSDLYMEVEQMLAEGEHPSRIARRLGIPVSMVYDVLESMPADDEIATEVGEIDXPVLFKLL
Ga0181362_11014911	3300017723	Freshwater Lake	MSDLYMEVEQMLAEGEHPSRIARRLGIPVSMVYDVLESMPADNEI
Ga0181344_10395772	3300017754	Freshwater Lake	MSDLYMEVEQMLAEGEHPSRIARRLGIPLSMVYDVLESMPADDEIATGVGEIG
Ga0181356_11958711	3300017761	Freshwater Lake	MSKMSDLYMEVEQMLAEGEHPARIARRLGIPLSMVYDVLESMPADDEIATGFGEIGXPELLELL
Ga0181356_12114401	3300017761	Freshwater Lake	MSKMSDLYMEVEQMLAEGEHPSRIARRLGIPLSMVYDVLESMPAEDEIATEVGEIGXPVLLKLL
Ga0181358_10385302	3300017774	Freshwater Lake	MSDLYMEVEQMLAEGENPSRIARRLGIPLSMVYDVLESMPAEDEIATEVGEIG
Ga0181358_11995171	3300017774	Freshwater Lake	MSKMSDLYMEVEQMLAEGEHPSRIARRLGIPLSMVYDVLESMPAEDEIATEVGKIGXPVLLKLL
Ga0181357_12940602	3300017777	Freshwater Lake	MSDLYMEVEQMLQEGEHPSRIARRLGIPLSMVYDVLESMPADDEIATEVGEIGXPVFSEL
Ga0187843_100435043	3300019093	Freshwater	MSDLYMEVEQMLAEGEHPARIARRLGIPLSMVYDVLESMPADDEIATEVGEIG
Ga0181361_1219681	3300019783	Freshwater Lake	MSKMSDLYMEVEQMLAEGENPSRIARRLGIPLSMVYDVLESMPAEDEIATEVGEIGXPVLLKLL
Ga0181359_10087854	3300019784	Freshwater Lake	MSDLYMEVEQMLAEGEHPSRIARRLGIPLSMVYDVLESMPADDEIATEVGEIG
Ga0181359_10252073	3300019784	Freshwater Lake	MSDLYMEVEQMLAEGEHPSRIARRLGIPLSMVYDVLESMPAEDEIATEVGKIG
Ga0181359_10442872	3300019784	Freshwater Lake	MSDLYMEVEQMLQEGEHPSRIARRLGIPLSMVYDVLESMPADDEIATEVGEIG
Ga0181354_10828783	3300022190	Freshwater Lake	MSKMSDLYMEVEQMLAEGEHPSRIARRLGIPLSMVYDVLESMPAEDEIATEVGKIG
Ga0181354_12501031	3300022190	Freshwater Lake	MSKMSDLYMEVEQMLAEGEHPSRIARRLGIPVSMVYDVLESMPADDEIATEVGKIDXPVLFKLL
Ga0181351_11324192	3300022407	Freshwater Lake	MSDLYMEVEQMLAEGEHPSRIARRLGIPVSMVYDVLESMPADDEIATEVGEID
Ga0214917_101434562	3300022752	Freshwater	MSDLYMEVETMLAEGEHPARIARRLDVPLSMVYDVLESMPAEDEIATEVGEIG
Ga0214921_103564593	3300023174	Freshwater	MSDLYMEVETMLAEGEHPARIARRLGVPLSMVYDVLESMPAEDEIATGVGEIG
Ga0214923_104968041	3300023179	Freshwater	MSKMSDLYMEVELMLAEGENPVRIARRLGIPLSMVYDVLESMPAEDEIATEVGKIG
Ga0214919_1000555915	3300023184	Freshwater	MSDLYMEVELMLAEGENPVRIARRLGIPLSMVYDVLESMPAEDEIATEVGKIG
Ga0214919_103384242	3300023184	Freshwater	MSDLYMEVETMLNEGEHPARIARRLGVPLSMVYDVLESMPAEDEIATGVGEIG
Ga0214919_103850922	3300023184	Freshwater	MSDLYMEVETMLAEGEHPARIARRLGIPLSTVYDVLESMPAEDEIATQVGEIG
Ga0244775_108297211	3300024346	Estuarine	MSDLYMEVEQMLAEGEHPARIARRLGVPLSMVYDVLESMPADDEIATEVGEIG
Ga0208495_10680791	3300025476	Freshwater	MSDLYMEVEQMLAEGEHPARIARRLGIPLSTVYDVLESMPEDDEIATQVGEIG
Ga0208864_10947092	3300025578	Freshwater	MSDLYMEVETMLNEGEHPARIARRLGIPLSTVYDVLESMPEEDEIATRVGEIG
Ga0208916_104427772	3300025896	Aqueous	MSDLYMEVELMLAEGEHPTRIARRLGIPLSMVYDVLESMPAEDEIATEVGEIG
Ga0209553_11109752	3300027688	Freshwater Lake	MSKMSDLYMEVEQMLAEGEHPSRIARRLGIPVSMVYDVLESMPADDEIATEVGEIG
Ga0209188_10101583	3300027708	Freshwater Lake	MSDLYMEVETMLNEGEHPARIARRLGVPLGMVYDVLESMPADDEIATEVGEIG
Ga0209188_10405855	3300027708	Freshwater Lake	MSDLYMEVETMLHEGEHPARIARRLGVPLSMVYDVLESMPADDEIATGVGEIG
Ga0209499_11181003	3300027712	Freshwater Lake	MSDLYMEVETMLAEGEHPARIARRLGVPLSMVYDVLESMPADDEIATGVGEIG
Ga0209297_100148310	3300027733	Freshwater Lake	MSDLYMEIELMLEEGENPVRIARRLGIPLSMVYDVLESMPAEDEIATEVGEIG
Ga0209087_10346942	3300027734	Freshwater Lake	MSDLYMEVETMLNEGEHPARIARRLGVPLSMVYDVLESMPAEDEIATQVGEIG
Ga0209087_10661962	3300027734	Freshwater Lake	MSDLYMEVEQMLAEGEHPSRIARRLGIPVSMVYDVLESMPAEDEIATGVGEIG
Ga0209087_12596422	3300027734	Freshwater Lake	MSKMSDLYMEVELMLSEGENPVRIARRLGIPLSMVYDVLESMPAEDEIATQVGEIGXPLLLELL
Ga0209190_12164062	3300027736	Freshwater Lake	MLAEGEHPSRIARRLGIPLSMVYDVLESMPAEDEIATRVGEIG
Ga0209085_10449176	3300027741	Freshwater Lake	MSKMSDLYMEVETMLNEGEHPARIARRLGVPLGMVYDVLESMPADDEIATEVGEIG
Ga0209189_12471042	3300027747	Freshwater Lake	MSDLYMEVETMLHEGEHPARIARRLGVPLSMVYDVLESMPADDEIATRVGEIG
Ga0209084_12803131	3300027749	Freshwater Lake	MSKMSDLYMEVETMLAEGEHPARIARRLGVPLSMVYDVLESMPADDEIATEVGEIGXPLLLELL
Ga0209296_12366793	3300027759	Freshwater Lake	AEGEHPSRIARRLGIPLSMVYDVLESMPAEDEIATGVGKIG
Ga0209088_100076112	3300027763	Freshwater Lake	MSDLYMEVEQMLAEGEHPSRIARRLGIPVSMVYDVLESMPAEDEIATEVGEIG
Ga0209088_100241373	3300027763	Freshwater Lake	MSDLYMEVELMLAEGENPVRIARRLGIPLSMVYDVLESMPAEDEIATEIGEIG
Ga0209500_100298503	3300027782	Freshwater Lake	MSDLYMEVETMLHEGEHPARIARRLGVPLSMVYDVLESMPADDEIATEVGKIG
Ga0209354_101466131	3300027808	Freshwater Lake	MSDLYMEVEQMLAEGEHPSRIARRLGIPVSMVYDVLESMPADDEIATEVGEIG
Ga0209354_102283633	3300027808	Freshwater Lake	EGEHPSRIARRLGIPVSMVYDVLESMPADDEIATEVGEIG
Ga0209191_10194041	3300027969	Freshwater Lake	MSDLYMEVETMLHEGEHPARIARRLGVPLSMVYDVLESMPADDEIATEVGKI
Ga0209191_10963402	3300027969	Freshwater Lake	MSDLYMEVELMLSEGENPVRIARRLGIPLSMVYDVLESMPAEDEIATQVGEIG
Ga0209191_11355142	3300027969	Freshwater Lake	MSDLYMEVEQMLQEGEHPARIARRLGIPLSMVYDVLESMPAEEEIATEVGEIG
Ga0209401_10287503	3300027971	Freshwater Lake	MSDLYMEVEQMLAEGEHPSRIARRLGIPPSMVYDVLESMPAEDEIATGVGEIG
Ga0209401_11777361	3300027971	Freshwater Lake	MSDLYMEVEQMLAEGEHPSRIARRLGIPLSMVYDVLESMPAEDE
Ga0209298_101479933	3300027973	Freshwater Lake	MSKMSDLYMEVELMLAEGENPVRIARRLGIPLSMVYDVLESMPAEDEIATEIGEIG
Ga0315905_111454441	3300032092	Freshwater	VEQMLAEGENPSRIARRLGIPLSMVYDVLESMPAEDEIATEVGEIG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094882

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences