Metagenome / Metatranscriptome Family F094708

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094708
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	55 residues
Representative Sequence	ALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTW
Number of Associated Samples	64
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	89.52 %
% of genes from short scaffolds (< 2000 bps)	92.38 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (77.143 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere (93.333 % of family members)
Environment Ontology (ENVO)	Unclassified (96.190 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant surface (66.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.67% β-sheet: 0.00% Coil/Unstructured: 45.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00076	RRM_1	1.90
PF00248	Aldo_ket_red	0.95
PF00106	adh_short	0.95
PF01217	Clat_adaptor_s	0.95
PF00112	Peptidase_C1	0.95
PF10609	ParA	0.95
PF06155	GBBH-like_N	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG3536	Uncharacterized conserved protein, DUF971 family	Function unknown [S]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
All Organisms	root	All Organisms	22.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
cellular organisms	root	All Organisms → cellular organisms	22.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	22.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	20.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	20.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	20.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	20.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	17.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	17.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	17.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	17.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	17.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	17.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	17.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
commelinids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids	17.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Poales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	17.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Poaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	13.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
PACMAD clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade	9.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Panicoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	8.57 %
Chloridoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Chloridoideae	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Panicodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae	7.62 %
Andropogonodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae	0.95 %
Eragrostideae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Chloridoideae → Eragrostideae	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Paniceae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	7.62 %
Eragrostidinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Chloridoideae → Eragrostideae → Eragrostidinae	0.95 %
Andropogoneae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Panicinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae	7.62 %
Sorghinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae	0.95 %
Eragrostis	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Chloridoideae → Eragrostideae → Eragrostidinae → Eragrostis	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Panicum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	7.62 %
Eragrostis curvula	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Chloridoideae → Eragrostideae → Eragrostidinae → Eragrostis → Eragrostis curvula	0.95 %
Sorghum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Panicum sect. Hiantes	section	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes	5.71 %
Panicum sect. Panicum	section	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum	0.95 %
Sorghum bicolor	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	0.95 %
Eragrostis curvula	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Chloridoideae → Eragrostideae → Eragrostidinae → Eragrostis → Eragrostis curvula	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	77.14 %
Panicum virgatum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	5.71 %
Panicum hallii	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii	0.95 %
Sorghum bicolor	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	0.95 %
Eragrostis curvula	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Chloridoideae → Eragrostideae → Eragrostidinae → Eragrostis → Eragrostis curvula	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300009980\|Ga0105135_104430	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	892	Open in IMG/M
3300010396\|Ga0134126_11778761	Not Available	676	Open in IMG/M
3300010396\|Ga0134126_12998269	Not Available	510	Open in IMG/M
3300010400\|Ga0134122_10262837	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Panicum → Panicum hallii	1463	Open in IMG/M
3300010400\|Ga0134122_13221886	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	512	Open in IMG/M
3300015280\|Ga0182100_1024409	Not Available	798	Open in IMG/M
3300015284\|Ga0182101_1017070	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	882	Open in IMG/M
3300015293\|Ga0182103_1018921	Not Available	847	Open in IMG/M
3300015293\|Ga0182103_1057789	Not Available	612	Open in IMG/M
3300015293\|Ga0182103_1062120	Not Available	598	Open in IMG/M
3300015301\|Ga0182184_1044961	Not Available	663	Open in IMG/M
3300015310\|Ga0182162_1101301	Not Available	552	Open in IMG/M
3300015311\|Ga0182182_1122913	Not Available	502	Open in IMG/M
3300015312\|Ga0182168_1096454	Not Available	578	Open in IMG/M
3300015313\|Ga0182164_1041051	Not Available	782	Open in IMG/M
3300015317\|Ga0182136_1086468	Not Available	608	Open in IMG/M
3300015318\|Ga0182181_1024071	Not Available	852	Open in IMG/M
3300015319\|Ga0182130_1058883	All Organisms → cellular organisms → Eukaryota	683	Open in IMG/M
3300015320\|Ga0182165_1079038	Not Available	643	Open in IMG/M
3300015327\|Ga0182114_1023715	Not Available	1021	Open in IMG/M
3300015329\|Ga0182135_1116169	Not Available	565	Open in IMG/M
3300015330\|Ga0182152_1019087	Not Available	1054	Open in IMG/M
3300015331\|Ga0182131_1078228	Not Available	661	Open in IMG/M
3300015331\|Ga0182131_1082198	Not Available	649	Open in IMG/M
3300015333\|Ga0182147_1017753	Not Available	1131	Open in IMG/M
3300015335\|Ga0182116_1116400	Not Available	608	Open in IMG/M
3300015337\|Ga0182151_1089997	Not Available	643	Open in IMG/M
3300015337\|Ga0182151_1124449	Not Available	567	Open in IMG/M
3300015338\|Ga0182137_1082473	Not Available	699	Open in IMG/M
3300015338\|Ga0182137_1108468	Not Available	625	Open in IMG/M
3300015339\|Ga0182149_1026725	Not Available	1017	Open in IMG/M
3300015339\|Ga0182149_1126052	Not Available	576	Open in IMG/M
3300015340\|Ga0182133_1128486	Not Available	599	Open in IMG/M
3300015340\|Ga0182133_1141586	Not Available	575	Open in IMG/M
3300015340\|Ga0182133_1172323	Not Available	527	Open in IMG/M
3300015348\|Ga0182115_1128383	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	807	Open in IMG/M
3300015348\|Ga0182115_1285667	Not Available	522	Open in IMG/M
3300015349\|Ga0182185_1216200	Not Available	581	Open in IMG/M
3300015349\|Ga0182185_1239176	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	552	Open in IMG/M
3300015349\|Ga0182185_1265450	Not Available	524	Open in IMG/M
3300015349\|Ga0182185_1273166	Not Available	516	Open in IMG/M
3300015350\|Ga0182163_1005231	All Organisms → cellular organisms → Eukaryota	2396	Open in IMG/M
3300015350\|Ga0182163_1125776	Not Available	790	Open in IMG/M
3300015350\|Ga0182163_1162913	Not Available	695	Open in IMG/M
3300015350\|Ga0182163_1189757	Not Available	643	Open in IMG/M
3300015350\|Ga0182163_1297175	Not Available	505	Open in IMG/M
3300015352\|Ga0182169_1072976	Not Available	1069	Open in IMG/M
3300015352\|Ga0182169_1094327	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	953	Open in IMG/M
3300015352\|Ga0182169_1112968	Not Available	875	Open in IMG/M
3300015352\|Ga0182169_1157710	Not Available	741	Open in IMG/M
3300015352\|Ga0182169_1160601	Not Available	734	Open in IMG/M
3300015352\|Ga0182169_1314283	Not Available	502	Open in IMG/M
3300015353\|Ga0182179_1063531	Not Available	1039	Open in IMG/M
3300015353\|Ga0182179_1122372	Not Available	795	Open in IMG/M
3300015353\|Ga0182179_1213555	Not Available	617	Open in IMG/M
3300015354\|Ga0182167_1057641	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Chloridoideae → Eragrostideae → Eragrostidinae → Eragrostis → Eragrostis curvula	1352	Open in IMG/M
3300015354\|Ga0182167_1126605	Not Available	941	Open in IMG/M
3300015354\|Ga0182167_1137739	Not Available	901	Open in IMG/M
3300015354\|Ga0182167_1205217	Not Available	720	Open in IMG/M
3300015354\|Ga0182167_1235382	Not Available	663	Open in IMG/M
3300015354\|Ga0182167_1285249	Not Available	589	Open in IMG/M
3300017412\|Ga0182199_1057434	Not Available	813	Open in IMG/M
3300017421\|Ga0182213_1130968	Not Available	702	Open in IMG/M
3300017440\|Ga0182214_1158049	Not Available	506	Open in IMG/M
3300017693\|Ga0182216_1001622	Not Available	2984	Open in IMG/M
3300017693\|Ga0182216_1057790	Not Available	851	Open in IMG/M
3300017693\|Ga0182216_1090007	Not Available	722	Open in IMG/M
3300017693\|Ga0182216_1145300	Not Available	599	Open in IMG/M
3300028055\|Ga0268338_1045508	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	500	Open in IMG/M
3300028061\|Ga0268314_1045988	Not Available	535	Open in IMG/M
3300032464\|Ga0214492_1042399	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	883	Open in IMG/M
3300032465\|Ga0214493_1145954	Not Available	549	Open in IMG/M
3300032466\|Ga0214503_1180376	Not Available	659	Open in IMG/M
3300032467\|Ga0214488_1063788	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	816	Open in IMG/M
3300032469\|Ga0214491_1064498	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	885	Open in IMG/M
3300032490\|Ga0214495_1113986	Not Available	616	Open in IMG/M
3300032502\|Ga0214490_1019531	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1399	Open in IMG/M
3300032502\|Ga0214490_1093592	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	687	Open in IMG/M
3300032502\|Ga0214490_1156463	Not Available	513	Open in IMG/M
3300032589\|Ga0214500_1002864	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	3178	Open in IMG/M
3300032757\|Ga0314753_1074611	Not Available	603	Open in IMG/M
3300032790\|Ga0314731_1045924	Not Available	730	Open in IMG/M
3300032791\|Ga0314748_1055450	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	844	Open in IMG/M
3300032791\|Ga0314748_1055461	Not Available	844	Open in IMG/M
3300032791\|Ga0314748_1117249	All Organisms → cellular organisms → Eukaryota	555	Open in IMG/M
3300032812\|Ga0314745_1058835	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	826	Open in IMG/M
3300032823\|Ga0314723_1065809	Not Available	691	Open in IMG/M
3300032843\|Ga0314736_1014293	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1005	Open in IMG/M
3300032844\|Ga0314743_1061564	Not Available	878	Open in IMG/M
3300032844\|Ga0314743_1082522	Not Available	746	Open in IMG/M
3300032875\|Ga0314737_1053488	Not Available	698	Open in IMG/M
3300032913\|Ga0314739_1103565	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	518	Open in IMG/M
3300032934\|Ga0314741_1015811	Not Available	1558	Open in IMG/M
3300032976\|Ga0314752_1034405	Not Available	963	Open in IMG/M
3300033525\|Ga0314758_1179124	Not Available	576	Open in IMG/M
3300033526\|Ga0314761_1145525	Not Available	521	Open in IMG/M
3300033532\|Ga0314767_1168605	Not Available	549	Open in IMG/M
3300033535\|Ga0314759_1281463	Not Available	526	Open in IMG/M
3300033537\|Ga0314766_1177166	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	773	Open in IMG/M
3300033542\|Ga0314769_1240515	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	608	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	96.19%
Environmental	Environmental	3.81%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	96.19%
Terrestrial	Environmental → Terrestrial	3.81%

Habitat	Taxonomy	Distribution
Phyllosphere	Host-Associated → Plants → Phyllosphere	95.24%
Soil	Environmental → Terrestrial → Soil	3.81%
Unclassified	Host-Associated → Plants → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	95.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	3.81%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	95.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.81%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Switchgrass Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere	93.33%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.81%
Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere	1.90%
Switchgrass Associated	Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300009980	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300015280	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015284	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015293	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015301	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015310	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015311	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015312	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015313	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015317	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015318	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015319	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015320	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015326	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015327	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015329	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015330	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015331	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015333	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015335	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015337	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015338	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015339	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015340	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015348	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015349	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015350	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015352	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015353	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015354	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017412	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017414	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017421	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017440	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017693	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300028055	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_07AUG2017_LD1	Host-Associated	Open in IMG/M
3300028061	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_05JUN2017_LD1	Host-Associated	Open in IMG/M
3300032464	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032465	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032466	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_12SEP2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032467	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_31MAY2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032469	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032490	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032502	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032589	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032757	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032790	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032791	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032812	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032823	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032843	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032844	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032875	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032913	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032934	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032976	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033525	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_28AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033526	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033532	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033535	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033537	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_18SEP2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033542	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0105135_1044303	3300009980	Switchgrass Associated	ALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTW*
Ga0134126_117787611	3300010396	Terrestrial Soil	MPTALEAGFSQVAKNCQVFYQTVGGVFLTFLPKIKDGNSICQTAGDALRGCLNPGAKI*
Ga0134126_129982691	3300010396	Terrestrial Soil	APRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDDNSICQTAADALMQF*
Ga0134122_102628371	3300010400	Terrestrial Soil	LEAGFSQVAKNCQVFCQTVGGVFLMFLPKIKDDNSICQTIEDALSTKCLSNLAD*
Ga0134122_132218861	3300010400	Terrestrial Soil	APRAYIYALEAGFSQVAKNCQIFYQTVGGVFLTFLPKIKNGNLICQTAGDALSL*
Ga0182100_10244091	3300015280	Switchgrass Phyllosphere	IYALEAGFSQVVKNCQVFCQTVGGVFLTFLPKIKDSNSICQTAGDALIVWHFYLSNI*
Ga0182101_10170701	3300015284	Switchgrass Phyllosphere	ALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIRDVNSICQTAGDALSGYSLGTTDLGQAL*
Ga0182103_10189211	3300015293	Switchgrass Phyllosphere	RAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALKMLSRASPRVPNIHS*
Ga0182103_10577891	3300015293	Switchgrass Phyllosphere	LEAGFSQVAKNCQVFCQTVGGVFLMFLSKIKDDNSICKTAGDALWL*
Ga0182103_10621201	3300015293	Switchgrass Phyllosphere	NHDANRAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLSKIKDDNSICQTAGDALSG
Ga0182184_10449611	3300015301	Switchgrass Phyllosphere	TRNHDANRAPRAYIYALETGFSQIAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTEPHLNPFAKKACQI*
Ga0182162_11013011	3300015310	Switchgrass Phyllosphere	NHDANRAPRAYIYALEAGFFQIAKNCQVFCQTVGGVFLTFLPKIKDDNSIC*
Ga0182182_11229131	3300015311	Switchgrass Phyllosphere	NRAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIRDGNSICQTAGDALT*
Ga0182168_10964541	3300015312	Switchgrass Phyllosphere	MPNICALKAGFSQVAKNCQVFCQTVGKIFLMFLPKIKDGNSICQTVGDALTR
Ga0182164_10410511	3300015313	Switchgrass Phyllosphere	AYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALRSYRTSNVCY*
Ga0182136_10864681	3300015317	Switchgrass Phyllosphere	MPTARRARIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALRQLL*
Ga0182181_10240711	3300015318	Switchgrass Phyllosphere	RAYICALEADFSQVAKNCQVFYQTVGGVFLTFLPKIKDSKSICQTAGDALSIHVENVDVLNT*
Ga0182130_10588831	3300015319	Switchgrass Phyllosphere	APRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDVNSICQTAGDALSPYTLIQL
Ga0182165_10790381	3300015320	Switchgrass Phyllosphere	LEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDDNSICQTAG
Ga0182166_10698982	3300015326	Switchgrass Phyllosphere	ISFSPSHLTRNHDANRARRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNLICQTAGDALTK*
Ga0182166_11181231	3300015326	Switchgrass Phyllosphere	HLTRNHDANRAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTARDALTSPIG*
Ga0182114_10237152	3300015327	Switchgrass Phyllosphere	RAYIYALEPGFSQVAKNCQVFCQTVGEVFLTFLPKIKDGNSICQTAGDALTTPHQNEP*
Ga0182135_11161691	3300015329	Switchgrass Phyllosphere	ALEAGFSQVAKNCQIFYLTVEGVFLTFLPKIKDDNSIWQTARDALRQCKPFEL*
Ga0182152_10190871	3300015330	Switchgrass Phyllosphere	YALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDDNSICQTVGDALTK*
Ga0182131_10782281	3300015331	Switchgrass Phyllosphere	IYALEAGFSQVAKNYQVFCQIVVGVFLIFLTKIKDDNSICQTAGDALMQF*
Ga0182131_10821981	3300015331	Switchgrass Phyllosphere	DANRAPRAYIYALEADFSQVAKNCQVFYQTVGGVFLIFLTKIKDGNLICQTAGDALR*
Ga0182147_10177531	3300015333	Switchgrass Phyllosphere	RAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDAQHSS*
Ga0182116_11164001	3300015335	Switchgrass Phyllosphere	LEAGFFQVAKNCQVFCQTVGGLFLTFLPKIKDGNSICQTAGDALSC*
Ga0182151_10664991	3300015337	Switchgrass Phyllosphere	SPSHLTRNHDDNRAPRAYIYALEAGFSQVAKICQVFCQTVGGIFLTFLPKIKDGNSICHTAGDAL*
Ga0182151_10899971	3300015337	Switchgrass Phyllosphere	AYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLLKIKDGNSICQTAGDALTIHKNENLIIL
Ga0182151_11244491	3300015337	Switchgrass Phyllosphere	APRAYIYALEAGFSQVAKNYQVFCQTVGGVFLTFLPKIKDDNSICQTADVSMCNFKLRS*
Ga0182137_10824731	3300015338	Switchgrass Phyllosphere	TRNHDANRAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLMFLPKIKDGNSICQTLGDALS*
Ga0182137_11084681	3300015338	Switchgrass Phyllosphere	NHDANRAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQNAGDALRIAKRL*
Ga0182149_10267252	3300015339	Switchgrass Phyllosphere	IYALEAGFSQVAKNCQVFCQIVGGVFLTFLPKIKDGNSICQTAGDALRGRFGALLIS*
Ga0182149_11260521	3300015339	Switchgrass Phyllosphere	ALEPGFSQVAKNCQVFCQTVEGVFLTFFPKIKNGSSICQTAGDALTTPHQNEP*
Ga0182133_11284861	3300015340	Switchgrass Phyllosphere	RAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTARDALTKGDVSLTCHCQDG*
Ga0182133_11415862	3300015340	Switchgrass Phyllosphere	TRNHDANRAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLMFLPKIKDGNSICQTAGDALSTFTTKLLTLYFLFF*
Ga0182133_11723231	3300015340	Switchgrass Phyllosphere	AYIYALEAGFSQVAKNCQILYLTVGGVFLTFLPKIKNNNSICQTAGDALRQCKPFQL*
Ga0182115_11283831	3300015348	Switchgrass Phyllosphere	AYIYALEAGFSQVAKNCQVFCQIVGGVFLTFLPKIKDGNSICQNLGDALSAVGLSSKEKK
Ga0182115_12856672	3300015348	Switchgrass Phyllosphere	TRNHDANRAPRAYIYALEADFFQIAKNCQVFCQIVGGVFLMFLPKIKDDTSICQTGDARA
Ga0182185_12162001	3300015349	Switchgrass Phyllosphere	NRAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLMFLPKIKDDNSICQTIGDALINL*
Ga0182185_12391761	3300015349	Switchgrass Phyllosphere	IYTLEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICRTLGDALRFR*
Ga0182185_12654501	3300015349	Switchgrass Phyllosphere	FSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTLLHETVL*
Ga0182185_12731662	3300015349	Switchgrass Phyllosphere	YIYALEAGFSQVAKNCQVFCQTVGEVFLTFLPKIKDANSICQTAGML*
Ga0182163_10052311	3300015350	Switchgrass Phyllosphere	YIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDVNSICQTAGDALSPYTLIQL*
Ga0182163_11257761	3300015350	Switchgrass Phyllosphere	IYALEAGFFQVVKNYQIFCQTVGGIFLTLLSKIKNGNSICQTAGDALTN*
Ga0182163_11629132	3300015350	Switchgrass Phyllosphere	APRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDDNSICQTAGDALTY*
Ga0182163_11897571	3300015350	Switchgrass Phyllosphere	ALEAGFSQVAKNCQVFCQTVGGVFLTFLSKIKDGNSICQTAADALTSLFLLPPQIYEEI*
Ga0182163_12971751	3300015350	Switchgrass Phyllosphere	TRNHDANRAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTCAIKV*
Ga0182169_10729761	3300015352	Switchgrass Phyllosphere	ALEAGFSQVAKNCQVFCQTVGGVFLMFLPKIKDDNSICQTAGDALSFGANNF*
Ga0182169_10943272	3300015352	Switchgrass Phyllosphere	IYALEAGFSQVAKNCQVFCQTIGGVFLMFLPKIKDDNSICQIAGDGLTKI*
Ga0182169_11129681	3300015352	Switchgrass Phyllosphere	YIYTLEAGFSQVAKNCQVFCQTVGRVFLIFLPKIKNGNSICQTAGHALRL*
Ga0182169_11577101	3300015352	Switchgrass Phyllosphere	TRNHDANRAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTLLHETVL*
Ga0182169_11606012	3300015352	Switchgrass Phyllosphere	SQVAKNCQVFCQTVGGVFLTFLPKIKDDNSICQTAGDALSFKRD*
Ga0182169_13142831	3300015352	Switchgrass Phyllosphere	ANRAPRAYIYTLEAGFSQVAKNCQVFCQTVGRVFLMFLPKIKDGNSICIPSN*
Ga0182179_10635311	3300015353	Switchgrass Phyllosphere	ALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTVGDALRKLRIT*
Ga0182179_11223722	3300015353	Switchgrass Phyllosphere	AGFSQVAKNCQVFCQTIGGVFLMFLPKIKNDNSICQTLGDALI*
Ga0182179_12135551	3300015353	Switchgrass Phyllosphere	LTRNHDANRAPRAYIYALEAGFSQVAKICEVFCQTVGGVFLMFLPKIKDGNSICQTDGDAIST*
Ga0182167_10576411	3300015354	Switchgrass Phyllosphere	NRAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKNDNSIC*
Ga0182167_11266053	3300015354	Switchgrass Phyllosphere	RAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDARSPRWQPRFFI
Ga0182167_11377391	3300015354	Switchgrass Phyllosphere	NRAPHAYIYALEAGFSQVAKNCQVFCETVGGVFLTFLPKIKDGNSICQNAGDALKIAKRL
Ga0182167_12052171	3300015354	Switchgrass Phyllosphere	IYALEAGFSQVAKNCQVFCQTVGGVFLMFLPKIKDDNSICQTLEDALS*
Ga0182167_12353822	3300015354	Switchgrass Phyllosphere	PRAYICALEADFSQVAKNCQVFCQTVRGIFLMFLLKIKDGNSICQTAGDALNL*
Ga0182167_12852491	3300015354	Switchgrass Phyllosphere	ALEAGFSQVAKNCQLFCQTVGEIFLTFLLKIKDGNSICQTDGDAT*
Ga0182199_10574341	3300017412	Switchgrass Phyllosphere	IYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDAK
Ga0182195_10418883	3300017414	Switchgrass Phyllosphere	SGLYIYALEAGFFQVVKNCQVFYQTVGEVFLIFLLKIKNGNSICQTAADALTTPTRVLLLSPAQHR
Ga0182213_11309681	3300017421	Switchgrass Phyllosphere	TRNHDANRAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALSNLNAGL
Ga0182214_11580491	3300017440	Switchgrass Phyllosphere	YALEAGFSQVAKNCEVFCQTVGGVFLTFLPKIKDGNSICQTLGDALVRFESHAMVQIVSS
Ga0182216_10016222	3300017693	Switchgrass Phyllosphere	YALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDDNSICQTARDALTSMVDGKKW
Ga0182216_10577901	3300017693	Switchgrass Phyllosphere	AGFSQVAKNCQVFCQTVGGVFLTFFAKIKNDNSICQTAEHALRL
Ga0182216_10900072	3300017693	Switchgrass Phyllosphere	SQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALSNLNAGL
Ga0182216_11453001	3300017693	Switchgrass Phyllosphere	APRAYIYALEAGFSQVAKNCQTVGGVFLTFLPKIKNGNSICQTAGDALVSN
Ga0268338_10455081	3300028055	Phyllosphere	GFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALRYLLANHEL
Ga0268314_10459881	3300028061	Phyllosphere	IYALEAGFFQVAKNCQVFCQTVGGVFLMFLPKIKDGNSICQTAGDALRSYRTSNVCY
Ga0214492_10423991	3300032464	Switchgrass Phyllosphere	TRNYDANRAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTLLHETVL
Ga0214493_10634632	3300032465	Switchgrass Phyllosphere	YIYALEAGFFQVAKNCQVFCQTVVGVFLTFLPKIKDGNSICQTAGDALSTPWRLALL
Ga0214493_11459541	3300032465	Switchgrass Phyllosphere	SQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTLLHETVL
Ga0214503_11803762	3300032466	Switchgrass Phyllosphere	AGFSQVAKNCQVFCQTVGGVFLTFLSKIKDGNSICQTAGDALSLQY
Ga0214488_10637881	3300032467	Switchgrass Phyllosphere	VAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTLLHETVL
Ga0214491_10644981	3300032469	Switchgrass Phyllosphere	ALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDDNSICQTAGDALTMLKWTTQRN
Ga0214495_11139862	3300032490	Switchgrass Phyllosphere	FSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTLLHETVL
Ga0214490_10195311	3300032502	Switchgrass Phyllosphere	YALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDDNSICQTAGDALTMLKWTTQRN
Ga0214490_10935922	3300032502	Switchgrass Phyllosphere	RNHDANRAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALNKKK
Ga0214490_11564631	3300032502	Switchgrass Phyllosphere	VLEADFSQVVKNYQVFCQTIGGVFLTFLPKIKDGNSICQTAGDALSG
Ga0214500_10028644	3300032589	Switchgrass Phyllosphere	AGFSQVAKNCQVFCQTVGEVFLTFLPKIKDGNSICQTAGDALSMQDA
Ga0314753_10746111	3300032757	Switchgrass Phyllosphere	LEAGFSQVAKNYQVFCQTIGGVFLTFLQKFKDGNSICQTLGDALSFSVSV
Ga0314731_10459242	3300032790	Switchgrass Phyllosphere	VPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALSTPWRLAL
Ga0314748_10554501	3300032791	Switchgrass Phyllosphere	APRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTLLHETVL
Ga0314748_10554612	3300032791	Switchgrass Phyllosphere	LEAGFSQVAKNYQVFCQTVGGLFLTFLPKIKDGNSICQTAGDALS
Ga0314748_11172491	3300032791	Switchgrass Phyllosphere	NRAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLMFLPKIKDGNLICQTTGDALKFLF
Ga0314745_10588352	3300032812	Switchgrass Phyllosphere	GFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTLLHETVL
Ga0314723_10658091	3300032823	Switchgrass Phyllosphere	EAGFSQVAKNCQVFCQTVGGVFLTFLPKIKNGNSICQTAGDALTLLHETVL
Ga0314736_10142931	3300032843	Switchgrass Phyllosphere	PRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTTGKKTNSTSVT
Ga0314743_10615641	3300032844	Switchgrass Phyllosphere	AYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALSTPWRLALL
Ga0314743_10825221	3300032844	Switchgrass Phyllosphere	NRAPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTCAIKV
Ga0314737_10534881	3300032875	Switchgrass Phyllosphere	IYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTLLHETVL
Ga0314739_11035652	3300032913	Switchgrass Phyllosphere	LEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDDNSICQTAGDALTMLKWTTQRN
Ga0314741_10158112	3300032934	Switchgrass Phyllosphere	NHDANRVPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTCAIKV
Ga0314752_10344052	3300032976	Switchgrass Phyllosphere	ADFSEIAKNCQIFCQTVGGVFLTFLPKIKDGNSIYQTAEDALTVQLNY
Ga0314758_11791242	3300033525	Switchgrass Phyllosphere	DANRVPRAYIYALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTCAIKV
Ga0314761_11455251	3300033526	Switchgrass Phyllosphere	ALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTLLHETVL
Ga0314767_11686051	3300033532	Switchgrass Phyllosphere	LTRNHDANRAPRAYIYALEAGFFQVVKNYQVFCQTVGGVFLTFLSKIKDGNSICRTLEML
Ga0314759_12814631	3300033535	Switchgrass Phyllosphere	YALEAGFSQVAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTLLHETVL
Ga0314766_11771661	3300033537	Switchgrass Phyllosphere	SQLAKNCQVFCQTVGGVFLTFLPKIKDGNSICQTAGDALTTGKKTNSTSVT
Ga0314769_12405151	3300033542	Switchgrass Phyllosphere	LEAGFSQVAKNCQVFCQTVGGVFLTFLLKIKDGNSICQTAGDALTMYLI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094708

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences