Metagenome / Metatranscriptome Family F094581

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094581
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	52 residues
Representative Sequence	ADAIGLSRDDAERMLDTLWRRRLVIRYDSAYVAVGSATEPMRLDA
Number of Associated Samples	96
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.06 %
% of genes from short scaffolds (< 2000 bps)	87.74 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.642 % of family members)
Environment Ontology (ENVO)	Unclassified (33.962 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.113 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.81% β-sheet: 10.96% Coil/Unstructured: 71.23%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01568	Molydop_binding	50.00
PF01053	Cys_Met_Meta_PP	37.74
PF00005	ABC_tran	6.60
PF02687	FtsX	1.89
PF01769	MgtE	0.94
PF01261	AP_endonuc_2	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	37.74
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	37.74
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	37.74
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	37.74
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	37.74
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	37.74
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	37.74
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	37.74
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	37.74
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	37.74
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	37.74
COG1824	Permease, similar to cation transporters	Inorganic ion transport and metabolism [P]	0.94
COG2239	Mg/Co/Ni transporter MgtE (contains CBS domain)	Inorganic ion transport and metabolism [P]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	90.57 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	90.57 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	36.79 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	33.96 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	36.79 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	33.96 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	36.79 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	33.96 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	33.96 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	2.83 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	1.89 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	33.96 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2.83 %
Gemmatimonas phototrophica	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas phototrophica	0.94 %
unclassified Gemmatimonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas	0.94 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	33.96 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2.83 %
Gemmatimonas sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	0.94 %
Gemmatimonas phototrophica	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas phototrophica	0.94 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000880\|AL20A1W_1113437	All Organisms → cellular organisms → Bacteria	2127	Open in IMG/M
3300000887\|AL16A1W_10371814	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300001330\|A305W6_1097228	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	524	Open in IMG/M
3300001361\|A30PFW6_1202182	All Organisms → cellular organisms → Bacteria	1242	Open in IMG/M
3300001661\|JGI12053J15887_10221729	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300001664\|P5cmW16_1033596	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300001664\|P5cmW16_1065846	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	607	Open in IMG/M
3300004479\|Ga0062595_102182223	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	542	Open in IMG/M
3300005343\|Ga0070687_100530460	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300005364\|Ga0070673_100340440	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300005434\|Ga0070709_11485998	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	550	Open in IMG/M
3300005439\|Ga0070711_100863950	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	770	Open in IMG/M
3300005536\|Ga0070697_101382738	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	628	Open in IMG/M
3300005539\|Ga0068853_100034957	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	4267	Open in IMG/M
3300005545\|Ga0070695_100154619	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1604	Open in IMG/M
3300005546\|Ga0070696_100882395	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	741	Open in IMG/M
3300005560\|Ga0066670_10792620	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	574	Open in IMG/M
3300005568\|Ga0066703_10756173	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300005616\|Ga0068852_101792476	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	636	Open in IMG/M
3300005719\|Ga0068861_100225873	All Organisms → cellular organisms → Bacteria	1585	Open in IMG/M
3300005887\|Ga0075292_1006446	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1437	Open in IMG/M
3300005938\|Ga0066795_10054897	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1176	Open in IMG/M
3300006034\|Ga0066656_10079359	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1956	Open in IMG/M
3300006173\|Ga0070716_100473717	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	918	Open in IMG/M
3300006800\|Ga0066660_10395438	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1139	Open in IMG/M
3300009012\|Ga0066710_104638465	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	514	Open in IMG/M
3300009029\|Ga0066793_10566261	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	648	Open in IMG/M
3300009098\|Ga0105245_11738918	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	676	Open in IMG/M
3300009137\|Ga0066709_100983998	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1234	Open in IMG/M
3300009143\|Ga0099792_10503629	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	759	Open in IMG/M
3300009177\|Ga0105248_12015314	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	656	Open in IMG/M
3300010039\|Ga0126309_10764021	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	627	Open in IMG/M
3300010301\|Ga0134070_10219711	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	702	Open in IMG/M
3300010371\|Ga0134125_10799167	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1038	Open in IMG/M
3300010396\|Ga0134126_12854454	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	523	Open in IMG/M
3300012010\|Ga0120118_1121709	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	629	Open in IMG/M
3300012203\|Ga0137399_10292907	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1343	Open in IMG/M
3300012206\|Ga0137380_10247355	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1608	Open in IMG/M
3300012207\|Ga0137381_10687619	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	889	Open in IMG/M
3300012208\|Ga0137376_11483653	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	569	Open in IMG/M
3300012210\|Ga0137378_11193964	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	676	Open in IMG/M
3300012211\|Ga0137377_11209963	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	685	Open in IMG/M
3300012285\|Ga0137370_11031093	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	506	Open in IMG/M
3300012351\|Ga0137386_10481390	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	894	Open in IMG/M
3300012356\|Ga0137371_10250495	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1383	Open in IMG/M
3300012361\|Ga0137360_10615535	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	930	Open in IMG/M
3300012483\|Ga0157337_1010913	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	710	Open in IMG/M
3300012683\|Ga0137398_10053729	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2396	Open in IMG/M
3300012685\|Ga0137397_10252279	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1314	Open in IMG/M
3300012685\|Ga0137397_10935295	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	641	Open in IMG/M
3300012907\|Ga0157283_10062778	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	892	Open in IMG/M
3300012927\|Ga0137416_10089902	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2283	Open in IMG/M
3300012929\|Ga0137404_11127835	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	720	Open in IMG/M
3300012930\|Ga0137407_12382608	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	506	Open in IMG/M
3300012944\|Ga0137410_10632238	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	887	Open in IMG/M
3300012955\|Ga0164298_10932268	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	635	Open in IMG/M
3300013105\|Ga0157369_12431789	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	530	Open in IMG/M
3300013307\|Ga0157372_11211555	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	872	Open in IMG/M
3300013765\|Ga0120172_1002217	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	7385	Open in IMG/M
3300013770\|Ga0120123_1012562	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1642	Open in IMG/M
3300014058\|Ga0120149_1001635	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	4318	Open in IMG/M
3300014058\|Ga0120149_1030133	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1306	Open in IMG/M
3300015241\|Ga0137418_11097270	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	567	Open in IMG/M
3300018027\|Ga0184605_10004394	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas phototrophica	4992	Open in IMG/M
3300018054\|Ga0184621_10170462	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	783	Open in IMG/M
3300018061\|Ga0184619_10193006	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	935	Open in IMG/M
3300018066\|Ga0184617_1043166	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1120	Open in IMG/M
3300018076\|Ga0184609_10362714	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	676	Open in IMG/M
3300020001\|Ga0193731_1007078	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2853	Open in IMG/M
3300020018\|Ga0193721_1069887	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	916	Open in IMG/M
3300020070\|Ga0206356_10068200	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	684	Open in IMG/M
3300021344\|Ga0193719_10116723	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1160	Open in IMG/M
3300021344\|Ga0193719_10224879	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	798	Open in IMG/M
3300021968\|Ga0193698_1012709	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1073	Open in IMG/M
3300022534\|Ga0224452_1007084	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2807	Open in IMG/M
3300024249\|Ga0247676_1033666	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	824	Open in IMG/M
3300025918\|Ga0207662_10762582	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	681	Open in IMG/M
3300025920\|Ga0207649_10747583	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	761	Open in IMG/M
3300025922\|Ga0207646_10155682	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2061	Open in IMG/M
3300025932\|Ga0207690_11028132	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	686	Open in IMG/M
3300026075\|Ga0207708_10088405	All Organisms → cellular organisms → Bacteria	2387	Open in IMG/M
3300026271\|Ga0209880_1031790	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1227	Open in IMG/M
3300026300\|Ga0209027_1307903	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	511	Open in IMG/M
3300026532\|Ga0209160_1021423	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4311	Open in IMG/M
3300026552\|Ga0209577_10497358	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	814	Open in IMG/M
3300027591\|Ga0209733_1081149	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	833	Open in IMG/M
3300027886\|Ga0209486_10980991	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	566	Open in IMG/M
3300028536\|Ga0137415_10057390	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3760	Open in IMG/M
3300028711\|Ga0307293_10151929	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	737	Open in IMG/M
3300028711\|Ga0307293_10309527	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	501	Open in IMG/M
3300028715\|Ga0307313_10108040	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	847	Open in IMG/M
3300028768\|Ga0307280_10157483	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	787	Open in IMG/M
3300028793\|Ga0307299_10278084	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	629	Open in IMG/M
3300028799\|Ga0307284_10153661	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	889	Open in IMG/M
3300028799\|Ga0307284_10169293	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	849	Open in IMG/M
3300028799\|Ga0307284_10202703	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	780	Open in IMG/M
3300028819\|Ga0307296_10669698	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	567	Open in IMG/M
3300028828\|Ga0307312_10509912	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	794	Open in IMG/M
3300028875\|Ga0307289_10255305	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	721	Open in IMG/M
3300028876\|Ga0307286_10286912	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	607	Open in IMG/M
3300028884\|Ga0307308_10185885	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	995	Open in IMG/M
3300028884\|Ga0307308_10243833	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	861	Open in IMG/M
3300028885\|Ga0307304_10085412	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1237	Open in IMG/M
3300028885\|Ga0307304_10321669	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	687	Open in IMG/M
3300028885\|Ga0307304_10337923	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	671	Open in IMG/M
3300030991\|Ga0073994_10027907	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	964	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.62%
Host-Associated	Host-Associated	10.38%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.96%
Plants	Host-Associated → Plants	10.38%
Aquatic	Environmental → Aquatic	5.66%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.60%
Sediment	Environmental → Aquatic → Sediment	5.66%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.87%
Loam	Environmental → Terrestrial → Soil → Loam	11.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.66%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	46.23%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	10.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.43%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.49%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.77%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.87%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	10.38%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.66%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.94%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000880	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-65cm-20A)- 1 week illumina	Environmental	Open in IMG/M
3300000887	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina	Environmental	Open in IMG/M
3300001330	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-5cm)- 6 month illumina	Environmental	Open in IMG/M
3300001361	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-PF)- 6 month illumina	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001664	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - 5cm_reassembled	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005887	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012483	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.yng.040610	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013765	Permafrost microbial communities from Nunavut, Canada - A30_80cm_6M	Environmental	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021968	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c1	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300024249	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026271	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191 (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AL20A1W_11134371	3300000880	Permafrost	EIISQLGAGVGADVADAIGLSSDDAERMLDTLWRRRLLIRYDNAYVAVGSATIPSQATRLDA*
AL16A1W_103718141	3300000887	Permafrost	LSPEHAQRMLDTLWRRRLVIRHDNGYVAVGSAAAPVEPMRLDA*
A305W6_10972282	3300001330	Permafrost	ISHLGAGVSADVAEVADATGLSREHAERMLDILWRRRLVIRHDNGYVAVGSATAAVGPMRVDA*
A30PFW6_12021821	3300001361	Permafrost	HAERMLDTLWRRRLVIRHDNGYVAVGGAAARVQPMRLDA*
JGI12053J15887_102217293	3300001661	Forest Soil	GVSADVAEVADATGLSREHAERMLNILWRRRLVIRHENGYVAVGSATGAVEPMRLDA*
P5cmW16_10335964	3300001664	Permafrost	ADATGLSREHAERMLDILWRRRLVIRHDNGYVAVGSATAAVGPMRADA*
P5cmW16_10658463	3300001664	Permafrost	ADATGLSREHAERMLDILWRRRLVIRHDNGYVAVGSATVSPEPMRLDA*
Ga0062595_1021822231	3300004479	Soil	WEIISQLGTGVGADVADAIGLSRVDADRMLDTLWRRRLLIRYDNAYVAVGSATVESQPTRLDV*
Ga0070687_1005304601	3300005343	Switchgrass Rhizosphere	AVADVAERTGLSRDVTERMLDMLWRRRLLIRYDDGYVAVGSATARPEPQLDA*
Ga0070673_1003404401	3300005364	Switchgrass Rhizosphere	AGAVADIAEATGLSSDAAERMLDTLWRRRLLIRYDDGYVAVGSATTRAEPLRLDA*
Ga0070709_114859981	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	GTGVGADVADAIGLSRVDADRMLDTLWRRRLLIRYDNAYVAVGSATVESQPTRLDA*
Ga0070711_1008639503	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	LSRVDADRMLDTLWRRRLLIRYDNAYVAVGSATVESQPTRLDV*
Ga0070697_1013827381	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	ADVADVIGLSRDAAERMLDTLWRRRLLIRYDNAYVAVGSATGASAPASLDT*
Ga0068853_1000349571	3300005539	Corn Rhizosphere	SCEAADRMLDTLWRRRLVIRHDSAYVAVGSATTPAESARLDA*
Ga0070695_1001546193	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	RKAWEIISQLGAGVGADVADATGLSCEAADRMLDTLWRRRLVIRHDSAYVAVGSATTPAESARLDA*
Ga0070696_1008823953	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	EATGLSRDAAERMLDTLWRRRLLIRYDDGYVAVGSATIRTEPMRLDA*
Ga0066670_107926201	3300005560	Soil	AAQRTLDLLWRRRLLIRYDDAYVAVGSATIRSEPMRLDA*
Ga0066703_107561731	3300005568	Soil	RSAWEIISHLGAGVSADVIEVADATGLSLERAERMLDTLWRRRLVIRHDNGYVAVGSATAPVEPMRLDA*
Ga0068852_1017924763	3300005616	Corn Rhizosphere	QLGAGVSADVADAIGLSPDAAERTLEKLWRRRLLIRHDHGYVAVGSASAPSQQMRLDA*
Ga0068861_1002258731	3300005719	Switchgrass Rhizosphere	IISQLGAGAVADVAERTGLSRDVTERMLDMLWRRRLLIRYDDGYVAVGSATARPEPQLDA
Ga0075292_10064463	3300005887	Rice Paddy Soil	DVADAIGLSPDDAERMLEKLWRRRLLIRHDDGYVAVGCASTPAQQVRLDA*
Ga0066795_100548973	3300005938	Soil	DDAERMLDTLWRRRLLIRYDNAYVAVGSASIPSPPTRLDP*
Ga0066656_100793594	3300006034	Soil	DAAQRTLDLLWRRRLLIRYDDAYVAVGSATIRSEPMRLDA*
Ga0070716_1004737173	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	AWEIISQLGTGVGADVADAIGLSRVDADRMLDTLWRRRLLIRYDNAYVAVGSATVESQPTRLDA*
Ga0066660_103954381	3300006800	Soil	ADATGLSRDAAERMLDTLWRRRLVIRYDDGYVAVGSATIRSEPLRLDA*
Ga0066710_1046384651	3300009012	Grasslands Soil	AGASSDVADAIGLSRDDAERTLDKLWRRRLLIRHENGYVAVGSASAPSEPMRLDA
Ga0066793_105662611	3300009029	Prmafrost Soil	GIVDVDERRAWEIISQLGAGAGADVADGTGLSPEHAERMLDILWRRRLVIRHDDGYVAVSSATAPVQPMRLDA*
Ga0105245_117389183	3300009098	Miscanthus Rhizosphere	DIAEATGLSSDAAERMLDTLWRRRLLIRYDDGYVAVGSATTRAEPLRLDA*
Ga0066709_1009839983	3300009137	Grasslands Soil	SDVADAIGLSADDAERTLDKLWRRRLLIRHDNGYVAVGSASAASQPMRLDA*
Ga0099792_105036291	3300009143	Vadose Zone Soil	EIISHLGAGVSADVAEVADATGLSRERAERMLNILWRRRLVIRHENGYVAVGSATAALEPMRLDA*
Ga0105248_120153141	3300009177	Switchgrass Rhizosphere	EATGLSSDAAERMLDTLWRRRLLIRYDDGYVAVGSATTRAEPLRLDA*
Ga0126309_107640211	3300010039	Serpentine Soil	DAERMLDTLWRRRLVIRHDNGYVAVGNAVLPNEPARIDA*
Ga0134070_102197113	3300010301	Grasslands Soil	QLGAGASSDVADVIGLSRDDAERTLDKLWRRRLLIRHDDGYVAVGSASAPSEPMRLDA*
Ga0134125_107991671	3300010371	Terrestrial Soil	RMLDTLWRRRLLIRYDDGYVAVGSATVRAEPMRLDA*
Ga0134126_128544541	3300010396	Terrestrial Soil	VDADRMLDTLWRRRLLIRYDNAYVAVGSATVESQPTRLDA*
Ga0120118_11217093	3300012010	Permafrost	ADVADAIGLSSDDAERMLDTLWRRRLLIRYDNGYVAVGSATIPSQPTRLDA*
Ga0137399_102929071	3300012203	Vadose Zone Soil	VADATGLSRGDAELMLDKLWRRRLLIRYDNAYVAVGSATITSAAMRLDA*
Ga0137380_102473551	3300012206	Vadose Zone Soil	AERMLDTLWRRRLVIRYDDGYVAVGSATIRSEPMRLA*
Ga0137381_106876191	3300012207	Vadose Zone Soil	RTLDKLWRRRLLIRHDNGYVAVGSASAPSEPMRLDA*
Ga0137376_114836532	3300012208	Vadose Zone Soil	AWEIISQLGSGVSADVADAIGLSRDDAERMLDTLWRRRLVIRYDSAYVAVGSATEPMRLDA*
Ga0137378_111939641	3300012210	Vadose Zone Soil	DALGHSPDAAERALDKLWRGRVPIRHKNAYVAVGSASAPSEPMRLDA*
Ga0137377_112099633	3300012211	Vadose Zone Soil	RDAAELMLDTLWRRRLVIRYDNAYVAVGNATVGSEPMRLDA*
Ga0137370_110310931	3300012285	Vadose Zone Soil	LGAGASADVADAIGLSPADAERMLDKLWRRRLLIRYDKGYVAVGSATVPSEPMRLDA*
Ga0137386_104813901	3300012351	Vadose Zone Soil	LSRDDAERTLDKLWRRRLLIRHDNGYVAVGSASAPSEPMRLDA*
Ga0137371_102504953	3300012356	Vadose Zone Soil	SSDVADAIGLSRDDAERTLDKLWRRRLLIRHENGYVAVGSASAPSEPMRLDA*
Ga0137360_106155353	3300012361	Vadose Zone Soil	HLGAGVSADVADVIGLSRDAAERMLDTLWRRRLLIRYDNAYVAVGSATGASASTSLDT*
Ga0157337_10109131	3300012483	Arabidopsis Rhizosphere	DIAEATGLSREAAERMLDTLWRRRLLIRYDDGYVAVGSATTRTEPLRLDA*
Ga0137398_100537291	3300012683	Vadose Zone Soil	EIISQLGTGVGADDADAIGLSRVDADRMLDTLWRRRLLIRYDNAYVAVGSATVDSQPTRLDA*
Ga0137397_102522791	3300012685	Vadose Zone Soil	IVGVNERKAWEIISQLGSGVSADVADAIGLSPADAETMLDTLWRRRLVIRYDSAYVAVGSAVEPMRLDA*
Ga0137397_109352953	3300012685	Vadose Zone Soil	GLSRDDAELMLDTLWRRRLVIRYGSAYVAVGSATIVSQPMGLDA*
Ga0157283_100627783	3300012907	Soil	LGAGAVADVAERTGLSRDVTERMLDMLWRRRLLIRYDDGYVAVGSTTARPEPRLDA*
Ga0137416_100899024	3300012927	Vadose Zone Soil	ATGLSRDDAEIMLDKLWRRRLLIRYDNAYVAVGSATITSAAMRLDA*
Ga0137404_111278353	3300012929	Vadose Zone Soil	IGVSRVDAELMLDKLWRRRLLIRYDNAYVAVGSATISSPTMRLDA*
Ga0137407_123826082	3300012930	Vadose Zone Soil	AAERMLDTLWRRRLLIRYDDGYVAVGSATARTEPMGLDA*
Ga0137410_106322381	3300012944	Vadose Zone Soil	AGVGADVADATGLSRDDAEIMLDKLWRRRLLIRYDNAYVAVGSATITSAAMRLDA*
Ga0164298_109322683	3300012955	Soil	AIGLSTDDTERTLEKLWRRRLLIRHDHGYVAVGSASAPVPEARLDA*
Ga0157369_124317892	3300013105	Corn Rhizosphere	MLDTLWRRRLVIRHDSAYVAVGSATTPAESARLDA*
Ga0157372_112115551	3300013307	Corn Rhizosphere	AERTLEKLWRRRLLIRHDHGYVAVGSASAPSQQMRLDA*
Ga0120172_10022171	3300013765	Permafrost	VADAIGLSSDDAERMLDTLWRRRLLIRYDNAYVAVGSATIPSQATRLDA*
Ga0120123_10125621	3300013770	Permafrost	LSREHAERMLDILWRRRLVIRHDNGYVAVGSATAAVGPMRVDA*
Ga0120149_10016351	3300014058	Permafrost	LGAGVGADVADAIGLSSDDAERMLDTLWRRRLLIRYDNAYVAVGSATIPSQATRLDA*
Ga0120149_10301333	3300014058	Permafrost	VSRLGAGASADVADATGLSREHAERMLDTLWRRRLLIRHDNGYVAVGSATAPVEPMRLDA
Ga0137418_110972701	3300015241	Vadose Zone Soil	DAEIMLDKLWRRRLLIRYDNAYVAVGSATITSAAMRLDA*
Ga0184605_100043941	3300018027	Groundwater Sediment	KAWEIISQLGSGVSADVADAIGLSRDDAERMLDTLWRRRLVIRYDSAYVAVGSATVPMRLDA
Ga0184621_101704621	3300018054	Groundwater Sediment	VSADVADAIGLSRDDAERMLDTLWRRRLVIRYDSAYVAVGSATVPMRLDA
Ga0184619_101930061	3300018061	Groundwater Sediment	ADAIGLSRDDAERMLDTLWRRRLVIRYDSAYVAVGSATVPMRLDA
Ga0184617_10431663	3300018066	Groundwater Sediment	SQLGSGVSADVADAIGLSRDDAEQMLDTLWRRRLVIRYDSAYVAVGSATEPMRLDA
Ga0184609_103627143	3300018076	Groundwater Sediment	AIGLSRDDAERMLDMLWRRRLVIRYDNGYVAVGSATGTTQPMRLDS
Ga0193731_10070781	3300020001	Soil	ADGESRLVGIVGVKERKAWEIISQLGSGVSADVADAIGLSRDDAEQMLDTLWRRRLVIRYDSAYVAVGSATVPMRLDA
Ga0193721_10698873	3300020018	Soil	RMLDTLWRRRLLIRYDNAYVAVGSATGGSTQMRLDA
Ga0206356_100682003	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	VGADVADATGLSCEAADRMLDTLWRRRLVIRHDSAYVAVGSATTPAESARLDA
Ga0193719_101167231	3300021344	Soil	GLEERQAWEIISQLGTGVGADVADAIGLSRVDADRMLDTLWRRRLLIRYDNAYVAVGSATVDSQPTRLDA
Ga0193719_102248793	3300021344	Soil	AERMLDTLWRRRLLIRYDNGYVAVGSATIPSHPSSLDA
Ga0193698_10127091	3300021968	Soil	RAWEIISQLGAGVGADVADAIGLSSDAADRMLDMLWRRRLLIRYDNAYVAVGAAVVPTHPSSLGA
Ga0224452_10070841	3300022534	Groundwater Sediment	VADAIGLSRDDAERMLDTLWRRRLVIRYDSAYVAVGSATIPSHPIRLDS
Ga0247676_10336663	3300024249	Soil	ADVADAIGLSRVDADRMLDTLWRRRLLIRYDNAYVAVGSATVESQPTRLDA
Ga0207662_107625823	3300025918	Switchgrass Rhizosphere	GAVADVAERTGLSRDVTERMLDMLWRRRLLIRYDDGYVAVGSATARPEPQLDA
Ga0207649_107475831	3300025920	Corn Rhizosphere	GVGADVADAAGISCEAADRTLDTLWRRRLVIRHDSGYVAVGSATAPAQSVRLDA
Ga0207646_101556821	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	SHLGAGVSADVADVIGLSRDAAERMLDTLWRRRLLIRYDNAYVAVGSATGASAPASLDT
Ga0207690_110281323	3300025932	Corn Rhizosphere	DVADAAGISCEAADRTLDTLWRRRLVIRHDSGYVAVGSATAPAQSVRLDA
Ga0207708_100884051	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	AGAVADVAEATGLSRDAAERMLDTLWRRRLLIRYDDGYVAVGSATTRTEPMRLDA
Ga0209880_10317903	3300026271	Soil	ISQLGTGISADVADAIGLSRDDAERMLDTLWRRRLLIRYDNAYVAVGSASIPSQPTRLDP
Ga0209027_13079031	3300026300	Grasslands Soil	EATGLSSDAAERMLDTLWRRRLVIRYDDGYVAVGSATTRSEPQRLDA
Ga0209160_10214236	3300026532	Soil	GLSRDAAERMLDTLWRRRLLIRYDDGYVAVGSATTRSEPLRLDA
Ga0209577_104973581	3300026552	Soil	TKATGLSKDAAERMLDTLWRRRLLIRYDDGYVAVGTATPRSESQRLDA
Ga0209733_10811493	3300027591	Forest Soil	MLDTLWRRRLLIRYDKGYVAVGSATGTSTPMRLDA
Ga0209486_109809913	3300027886	Agricultural Soil	ATAIGLSDDAAERMLDTLWRRRLVIRYDDGYVAVGSVTAPPQETRLDA
Ga0137415_100573901	3300028536	Vadose Zone Soil	ATGLSRDDAEIMLDKLWRRRLLIRYDNAYVAVGSATITSAAMRLDA
Ga0307293_101519291	3300028711	Soil	ISRLGSGVSADVAEAIGLSPADAESMLDTLWRRRLVIRYDSAYVAVGSAAEPSRLDA
Ga0307293_103095272	3300028711	Soil	GSRLVGIVGVKERKAWEIISQLGSGVSADVADAIGLSRDDAEQMLDTLWRRRLVIRYDSAYVAVGSATEPMRLDA
Ga0307313_101080401	3300028715	Soil	RKAWEIISQLGSGVSADVADAIGLSRDDAEQMLDTLWRRRLVIRYDSAYVAVGSATVPMRLDA
Ga0307280_101574831	3300028768	Soil	SGVSADVADAIGLSRDDAERMLDTLWRRRLVIRYDSAYVAVGSATEPMRLDA
Ga0307299_102780841	3300028793	Soil	GSGVSADVADAIGLSPADAERMLDTLWRRRLVIRYDSAYVAVGSAAEPSRLDA
Ga0307284_101536611	3300028799	Soil	DAIGLSRDDAERMLDTLWRRRLVIRYDNGYVAVGSATIPSVPMRLDA
Ga0307284_101692933	3300028799	Soil	SRLVGIVGVKERKAWEIISQLGSGVSADVADAIGLSRDDAERMLDTLWRRRLVIRYDSAYVAVGSATEPMRLDA
Ga0307284_102027033	3300028799	Soil	AEVADATGLSREHAERMLNILWRRRLVIRHENGYIAVGSATGAVEPMRLDA
Ga0307296_106696981	3300028819	Soil	EIISQLGSGVSADVAEAIGLSRDDAERMLDTLWRRRLVIRYDSAYVAVGSATEPMRLDA
Ga0307312_105099123	3300028828	Soil	NISQLGSGVSADVADAIGLSPADAESMLDTLWRRRLVIRYDSAYVAVGSAAEPMRLDA
Ga0307289_102553051	3300028875	Soil	IGLSRDDAERMLDTLWRRRLVIRYDSAYVAVGSATEPMRLDA
Ga0307286_102869122	3300028876	Soil	RLVGIVGVKERKAWEIISQLGSGVSADVADAIGLSPADAESMLDTLWRRRLVIRYDSAYVAVGSAAEPMRLDA
Ga0307308_101858851	3300028884	Soil	ADAIGLSRDDAERMLDTLWRRRLVIRYDSAYVAVGSATEPMRLDA
Ga0307308_102438333	3300028884	Soil	VEERKAWEIISQLGAGISADVADATGISRDDAERMLDTLWRRRLVIRYDNAYVAVGSASVGTDSMRLDA
Ga0307304_100854121	3300028885	Soil	RRAWEIISQLGTGVGADVADAIGLSRVDADRMLDTLWRRRLLIRYDNAYVAVGSATVDSQPTRLDA
Ga0307304_103216693	3300028885	Soil	ADATGISCEAADRTLDTLWRRRLVIRHDSAYVAVGSATAPAESMRLDA
Ga0307304_103379233	3300028885	Soil	RAWEIISHLGAGVSADVAEVIGLTSDAAERMLDTLWRRRLLIRYDNAYVAVGSATGGSTQMRLDA
Ga0073994_100279073	3300030991	Soil	GLSRVDADRMLDTLWRRRLLIRYDNAYVAVGSATVDSQPTRLDA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094581

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences