Metagenome Family F094569

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094569
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	58 residues
Representative Sequence	MATVKGIYELIKKDQLEGKEINSFEQAIVDAVEAEQSTTTKEVNLTFIKNKDGGEDGNN
Number of Associated Samples	72
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	82.08 %
% of genes near scaffold ends (potentially truncated)	24.53 %
% of genes from short scaffolds (< 2000 bps)	88.68 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.377 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (19.811 % of family members)
Environment Ontology (ENVO)	Unclassified (47.170 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (81.132 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.68% β-sheet: 0.00% Coil/Unstructured: 56.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00239	Resolvase	4.72
PF02493	MORN	3.77
PF13481	AAA_25	2.83
PF00589	Phage_integrase	2.83
PF00145	DNA_methylase	0.94
PF07045	DUF1330	0.94
PF10723	RepB-RCR_reg	0.94
PF05656	DUF805	0.94
PF05433	Rick_17kDa_Anti	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	4.72
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	4.72
COG2849	Antitoxin component YwqK of the YwqJK toxin-antitoxin module	Defense mechanisms [V]	3.77
COG4642	Uncharacterized conserved protein	Function unknown [S]	3.77
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.94
COG3152	Uncharacterized membrane protein YhaH, DUF805 family	Function unknown [S]	0.94
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.38 %
All Organisms	root	All Organisms	39.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.38 %
cellular organisms	root	All Organisms → cellular organisms	38.68 %
Viruses	superkingdom	All Organisms → Viruses	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.38 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.68 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	29.25 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	6.60 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.89 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.38 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.42 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6.60 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.89 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.38 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	16.98 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	6.60 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.89 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.94 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.38 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	16.04 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	6.60 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1.89 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.94 %
Pelagibacterales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacterales incertae sedis	0.94 %
Pseudoalteromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.38 %
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	14.15 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	6.60 %
unclassified Pelagibacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae	1.89 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1.89 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.94 %
Candidatus Fonsibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacterales incertae sedis → Candidatus Fonsibacter	0.94 %
Pseudoalteromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.38 %
Candidatus Pelagibacter ubique	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	8.49 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	6.60 %
Pelagibacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium	1.89 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1.89 %
unclassified Candidatus Fonsibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacterales incertae sedis → Candidatus Fonsibacter → unclassified Candidatus Fonsibacter	0.94 %
unclassified Pseudoalteromonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → unclassified Pseudoalteromonas	0.94 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.38 %
Candidatus Pelagibacter ubique	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	8.49 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	6.60 %
Pelagibacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium	1.89 %
Candidatus Fonsibacter sp. PEL4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacterales incertae sedis → Candidatus Fonsibacter → unclassified Candidatus Fonsibacter → Candidatus Fonsibacter sp. PEL4	0.94 %
Maribacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter	0.94 %
Pseudoalteromonas sp. SM9913	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → unclassified Pseudoalteromonas → Pseudoalteromonas sp. SM9913	0.94 %
unclassified Flavobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae	0.94 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.38 %
Candidatus Pelagibacter ubique	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	8.49 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	6.60 %
Pelagibacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium	1.89 %
unclassified Maribacter	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter	0.94 %
Flavobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	0.94 %
Candidatus Fonsibacter sp. PEL4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacterales incertae sedis → Candidatus Fonsibacter → unclassified Candidatus Fonsibacter → Candidatus Fonsibacter sp. PEL4	0.94 %
Pseudoalteromonas sp. SM9913	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → unclassified Pseudoalteromonas → Pseudoalteromonas sp. SM9913	0.94 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.38 %
Candidatus Pelagibacter ubique	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	8.49 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	6.60 %
Pelagibacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium	1.89 %
Maribacter sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	0.94 %
Flavobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	0.94 %
Candidatus Fonsibacter sp. PEL4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacterales incertae sedis → Candidatus Fonsibacter → unclassified Candidatus Fonsibacter → Candidatus Fonsibacter sp. PEL4	0.94 %
Pseudoalteromonas sp. SM9913	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → unclassified Pseudoalteromonas → Pseudoalteromonas sp. SM9913	0.94 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001419\|JGI11705J14877_10095630	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	885	Open in IMG/M
3300001748\|JGI11772J19994_1010854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1545	Open in IMG/M
3300001948\|GOS2228_1022089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1630	Open in IMG/M
3300001958\|GOS2232_1023990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1702	Open in IMG/M
3300004097\|Ga0055584_102347531	Not Available	541	Open in IMG/M
3300005432\|Ga0066845_10420003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	517	Open in IMG/M
3300005510\|Ga0066825_10350149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	543	Open in IMG/M
3300005512\|Ga0074648_1088531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1131	Open in IMG/M
3300005611\|Ga0074647_1007289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2353	Open in IMG/M
3300005611\|Ga0074647_1039404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300005971\|Ga0066370_10266641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300006351\|Ga0099953_1435768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	750	Open in IMG/M
3300006802\|Ga0070749_10363870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	802	Open in IMG/M
3300006802\|Ga0070749_10762283	Not Available	515	Open in IMG/M
3300006810\|Ga0070754_10362161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	640	Open in IMG/M
3300006867\|Ga0075476_10277187	Not Available	593	Open in IMG/M
3300006867\|Ga0075476_10287949	Not Available	579	Open in IMG/M
3300006874\|Ga0075475_10126962	Not Available	1134	Open in IMG/M
3300007114\|Ga0101668_1089035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	660	Open in IMG/M
3300007133\|Ga0101671_1054176	Not Available	584	Open in IMG/M
3300007344\|Ga0070745_1348908	Not Available	519	Open in IMG/M
3300007538\|Ga0099851_1001636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9480	Open in IMG/M
3300007538\|Ga0099851_1092324	Not Available	1158	Open in IMG/M
3300007538\|Ga0099851_1201144	Not Available	725	Open in IMG/M
3300007540\|Ga0099847_1119374	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	795	Open in IMG/M
3300007542\|Ga0099846_1001348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10175	Open in IMG/M
3300007623\|Ga0102948_1029270	Not Available	1818	Open in IMG/M
3300007640\|Ga0070751_1292033	Not Available	609	Open in IMG/M
3300007725\|Ga0102951_1019159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2179	Open in IMG/M
3300007725\|Ga0102951_1075936	Not Available	964	Open in IMG/M
3300007725\|Ga0102951_1166607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → unclassified Pseudoalteromonas → Pseudoalteromonas sp. SM9913	621	Open in IMG/M
3300007960\|Ga0099850_1303194	Not Available	606	Open in IMG/M
3300008012\|Ga0075480_10472240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	607	Open in IMG/M
3300009000\|Ga0102960_1106461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1020	Open in IMG/M
3300009000\|Ga0102960_1283418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	585	Open in IMG/M
3300009000\|Ga0102960_1284470	Not Available	584	Open in IMG/M
3300009000\|Ga0102960_1351559	Not Available	520	Open in IMG/M
3300009001\|Ga0102963_1029861	Not Available	2280	Open in IMG/M
3300009001\|Ga0102963_1084404	Not Available	1299	Open in IMG/M
3300009001\|Ga0102963_1282667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	654	Open in IMG/M
3300009001\|Ga0102963_1311601	Not Available	619	Open in IMG/M
3300009001\|Ga0102963_1350026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	580	Open in IMG/M
3300009071\|Ga0115566_10195955	Not Available	1236	Open in IMG/M
3300009193\|Ga0115551_1296625	Not Available	707	Open in IMG/M
3300009472\|Ga0115554_1426779	Not Available	517	Open in IMG/M
3300009476\|Ga0115555_1079544	Not Available	1428	Open in IMG/M
3300010297\|Ga0129345_1300842	Not Available	555	Open in IMG/M
3300010299\|Ga0129342_1049394	All Organisms → cellular organisms → Bacteria → Proteobacteria	1654	Open in IMG/M
3300010299\|Ga0129342_1150521	Not Available	848	Open in IMG/M
3300010299\|Ga0129342_1214466	Not Available	680	Open in IMG/M
3300010299\|Ga0129342_1315893	Not Available	535	Open in IMG/M
3300010368\|Ga0129324_10037070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	2293	Open in IMG/M
3300012920\|Ga0160423_10455220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	872	Open in IMG/M
3300012928\|Ga0163110_10682138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	800	Open in IMG/M
3300017824\|Ga0181552_10213285	Not Available	990	Open in IMG/M
3300017964\|Ga0181589_10834981	Not Available	569	Open in IMG/M
3300018048\|Ga0181606_10133214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1517	Open in IMG/M
3300018416\|Ga0181553_10079124	All Organisms → cellular organisms → Bacteria → Proteobacteria	2080	Open in IMG/M
3300018416\|Ga0181553_10515647	Not Available	637	Open in IMG/M
3300018416\|Ga0181553_10648704	Not Available	555	Open in IMG/M
3300018417\|Ga0181558_10220114	Not Available	1076	Open in IMG/M
3300018420\|Ga0181563_10434646	Not Available	744	Open in IMG/M
3300018876\|Ga0181564_10040793	All Organisms → cellular organisms → Bacteria	3242	Open in IMG/M
3300018876\|Ga0181564_10200532	Not Available	1160	Open in IMG/M
3300018876\|Ga0181564_10446048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	699	Open in IMG/M
3300018876\|Ga0181564_10691642	Not Available	537	Open in IMG/M
3300019765\|Ga0194024_1135188	Not Available	574	Open in IMG/M
3300020053\|Ga0181595_10387905	Not Available	545	Open in IMG/M
3300020288\|Ga0211619_1034173	Not Available	703	Open in IMG/M
3300020392\|Ga0211666_10213463	Not Available	739	Open in IMG/M
3300020400\|Ga0211636_10170337	Not Available	854	Open in IMG/M
3300020403\|Ga0211532_10272456	Not Available	657	Open in IMG/M
3300020408\|Ga0211651_10271253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	646	Open in IMG/M
3300020418\|Ga0211557_10415818	Not Available	596	Open in IMG/M
3300020433\|Ga0211565_10225054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	816	Open in IMG/M
3300020433\|Ga0211565_10386198	Not Available	611	Open in IMG/M
3300020470\|Ga0211543_10325552	Not Available	744	Open in IMG/M
3300020471\|Ga0211614_10510380	Not Available	533	Open in IMG/M
3300021425\|Ga0213866_10341155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	743	Open in IMG/M
3300021957\|Ga0222717_10483242	Not Available	670	Open in IMG/M
3300021957\|Ga0222717_10624367	Not Available	562	Open in IMG/M
3300021957\|Ga0222717_10664751	Not Available	537	Open in IMG/M
3300021958\|Ga0222718_10078506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacterales incertae sedis → Candidatus Fonsibacter → unclassified Candidatus Fonsibacter → Candidatus Fonsibacter sp. PEL4	1998	Open in IMG/M
3300021958\|Ga0222718_10108132	Not Available	1628	Open in IMG/M
3300021958\|Ga0222718_10598634	Not Available	517	Open in IMG/M
3300021959\|Ga0222716_10360038	Not Available	858	Open in IMG/M
3300021959\|Ga0222716_10388816	Not Available	814	Open in IMG/M
3300021960\|Ga0222715_10041576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3231	Open in IMG/M
3300021960\|Ga0222715_10436839	Not Available	708	Open in IMG/M
3300021964\|Ga0222719_10168787	Not Available	1526	Open in IMG/M
3300021964\|Ga0222719_10494184	Not Available	736	Open in IMG/M
3300022176\|Ga0212031_1092419	Not Available	517	Open in IMG/M
3300022200\|Ga0196901_1183252	Not Available	680	Open in IMG/M
3300022909\|Ga0255755_1331600	Not Available	518	Open in IMG/M
3300022928\|Ga0255758_10318621	Not Available	653	Open in IMG/M
3300023273\|Ga0255763_1209790	Not Available	759	Open in IMG/M
3300025655\|Ga0208795_1033249	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1611	Open in IMG/M
3300025655\|Ga0208795_1108897	Not Available	733	Open in IMG/M
3300025687\|Ga0208019_1002075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10285	Open in IMG/M
3300025695\|Ga0209653_1022071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium	2920	Open in IMG/M
3300025695\|Ga0209653_1037240	Not Available	1994	Open in IMG/M
3300025695\|Ga0209653_1120133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	817	Open in IMG/M
3300025695\|Ga0209653_1151601	Not Available	681	Open in IMG/M
3300025879\|Ga0209555_10093122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium	1303	Open in IMG/M
3300025889\|Ga0208644_1043246	Not Available	2566	Open in IMG/M
3300026138\|Ga0209951_1132580	Not Available	501	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	81.13%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	17.92%
Freshwater	Environmental → Aquatic → Freshwater	0.94%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	26.42%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	21.70%
Unclassified	Environmental → Aquatic → Marine → Unclassified	20.75%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	17.92%
Oceanic	Environmental → Aquatic → Marine → Oceanic	5.66%
Pelagic	Environmental → Aquatic → Marine → Pelagic	3.77%
Volcanic	Environmental → Aquatic → Marine → Volcanic	1.89%
River	Environmental → Aquatic → Freshwater → River	0.94%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	26.42%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	20.75%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	15.09%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	15.09%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	6.60%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	2.83%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	2.83%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	1.89%
Epilimnion	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion	1.89%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.94%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment	0.94%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	19.81%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	15.09%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	11.32%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	9.43%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	9.43%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	6.60%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	5.66%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	3.77%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	3.77%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	2.83%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	1.89%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment	1.89%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment	1.89%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.94%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	0.94%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.94%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.94%
Volcanic Co2 Seeps	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seeps	0.94%
Volcanic Co2 Seep Seawater	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater	0.94%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001419	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m)	Environmental	Open in IMG/M
3300001748	Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m)	Environmental	Open in IMG/M
3300001948	Marine microbial communities from Chesapeake Bay, Maryland, USA - GS012	Environmental	Open in IMG/M
3300001958	Marine microbial communities from Gulf of Mexico, USA - GS016	Environmental	Open in IMG/M
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental	Open in IMG/M
3300005432	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78	Environmental	Open in IMG/M
3300005510	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45	Environmental	Open in IMG/M
3300005512	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water	Environmental	Open in IMG/M
3300005611	Saline surface water microbial communities from Etoliko Lagoon, Greece	Environmental	Open in IMG/M
3300005971	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A	Environmental	Open in IMG/M
3300006351	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0045m	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01	Environmental	Open in IMG/M
3300006867	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA	Environmental	Open in IMG/M
3300006874	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA	Environmental	Open in IMG/M
3300007114	Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', waterEBis4	Environmental	Open in IMG/M
3300007133	Seawater microbiome, Papua New Guinea CO2 seep, Dobu 'bubble', water-ds	Environmental	Open in IMG/M
3300007344	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007540	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG	Environmental	Open in IMG/M
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental	Open in IMG/M
3300007623	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG	Environmental	Open in IMG/M
3300007640	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28	Environmental	Open in IMG/M
3300007725	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MG	Environmental	Open in IMG/M
3300007960	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG	Environmental	Open in IMG/M
3300008012	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA	Environmental	Open in IMG/M
3300009000	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG	Environmental	Open in IMG/M
3300009001	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG	Environmental	Open in IMG/M
3300009071	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405	Environmental	Open in IMG/M
3300009193	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321	Environmental	Open in IMG/M
3300009472	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404	Environmental	Open in IMG/M
3300009476	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407	Environmental	Open in IMG/M
3300010297	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA	Environmental	Open in IMG/M
3300010299	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA	Environmental	Open in IMG/M
3300010368	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300017824	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017964	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018048	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)	Environmental	Open in IMG/M
3300018416	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018417	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018420	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018876	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019765	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG	Environmental	Open in IMG/M
3300020053	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041401AS metaG (spades assembly)	Environmental	Open in IMG/M
3300020288	Marine microbial communities from Tara Oceans - TARA_B100000161 (ERX556132-ERR599045)	Environmental	Open in IMG/M
3300020392	Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)	Environmental	Open in IMG/M
3300020400	Marine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)	Environmental	Open in IMG/M
3300020403	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)	Environmental	Open in IMG/M
3300020408	Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)	Environmental	Open in IMG/M
3300020418	Marine microbial communities from Tara Oceans - TARA_B100002051 (ERX556028-ERR599136)	Environmental	Open in IMG/M
3300020433	Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)	Environmental	Open in IMG/M
3300020470	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)	Environmental	Open in IMG/M
3300020471	Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)	Environmental	Open in IMG/M
3300021425	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022176	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)	Environmental	Open in IMG/M
3300022200	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)	Environmental	Open in IMG/M
3300022909	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG	Environmental	Open in IMG/M
3300022928	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG	Environmental	Open in IMG/M
3300023273	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG	Environmental	Open in IMG/M
3300025655	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025687	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025695	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)	Environmental	Open in IMG/M
3300025879	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_DNA (SPAdes)	Environmental	Open in IMG/M
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental	Open in IMG/M
3300026138	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG (SPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11705J14877_100956304	3300001419	Saline Water And Sediment	MATIKGIYELIKKDQQEGKKINSFEQAIVDAVEAEQSPTTKEVNLTFIKNKDGGNNGNS*
JGI11772J19994_10108544	3300001748	Saline Water And Sediment	MATIKGIYELIKKDQREGKEINSFEQAIVDTVEAEQSTTTKEVSLTFIKNKDGGEDGNN*
GOS2228_10220895	3300001948	Marine	MATIKGIYELIKKDQLEGKEIGVLERSILDAVEAEQSKTTKEVNITFIKNKDGGEDGHN*
GOS2232_10239904	3300001958	Marine	MATVKGIYNLIKQDQLKGIKISVMDQAIIDACEAENSKTTKEVNLTFIKYKKDGGENGNN
Ga0055584_1023475311	3300004097	Pelagic Marine	MATIKGVYELIKKDQLEGKDIGVLEQSILNAVEAEKSKTTKEVNITFIKNKDGGDNGNG*
Ga0066845_104200031	3300005432	Marine	MATVRGVYNLIKDRQKKGIKIGVLEQAIVDAVEAEQSKTTKEINVTFIKNKKEDDDHNS*
Ga0066825_103501491	3300005510	Marine	MATVKGIYNLIKQDQLKGIKISVMDQAIIDACEADNSKTTKEVNLTFI
Ga0074648_10885315	3300005512	Saline Water And Sediment	MATIKGIYELIKKDQLEGKKINSFEQAIVDAVEAEQSPTTKEVNLTFIKNNDGGEDGHN*
Ga0074647_10072895	3300005611	Saline Water And Sediment	MATIKGIYELIKKDQLEGKEINSFEQAIVDAVEAEQSPTTKEVNLTFIKNKDGGEDGHN*
Ga0074647_10394042	3300005611	Saline Water And Sediment	MATIKGIYELIKKDQREGKEINSFEQAIVDTAEAEQSTTTKEVSLTFIKNKDGGEDGNN*
Ga0066370_102666413	3300005971	Marine	IKQDQLKGIKISVMDQAIIDACEAENSKTTKEVNLTFIKYKKDGGENGNN*
Ga0099953_14357683	3300006351	Marine	LIKQDQLKGIKISVMDQAIIDACEAENSKTTKEVNLTFIKYKKDGGENGNN*
Ga0070749_103638704	3300006802	Aqueous	IYELIKKDQLEGKKINSFEQAIVDAVEAEQSPTTKEVNLTFIKNNNGGEDGHN*
Ga0070749_107622832	3300006802	Aqueous	MATIKGIYELIKKDQLEGKEINSFEQAIVDAVEAEQSTTTKEVNITFIKNRDRGDNGNS*
Ga0070754_103621612	3300006810	Aqueous	MATIKGIYELIKKDQLEGKIINSFEQAIVDAVEAEQSPTTKEVNLTFIKNKELREDGHK*
Ga0075476_102771871	3300006867	Aqueous	KGIYELIKKDQREGKEINSFEQAIVDAVEAEQSTTTKEVSLTFIKNKDGGEDGNN*
Ga0075476_102879492	3300006867	Aqueous	MATIKGIYELIKKDQLEGKKINSFEQAIVDAVEAEQSTTTKEVKITFIKNKDGGEDGHN*
Ga0075475_101269622	3300006874	Aqueous	MATVKGLYDLIKKDQLEGKEIGVLERSILDAVEAEQSKTTKEVNITFIKNKDGGDNGNS*
Ga0101668_10890352	3300007114	Volcanic Co2 Seep Seawater	MATVEGVYNLIKDRQKKGIKIGVLEQAIVDAVESEQSKTTKEVNLTFIKYKKDGSENGNN
Ga0101671_10541762	3300007133	Volcanic Co2 Seeps	MATVKGIYNLIKQDQLKSIKISVMDQAIIDACEAENSKTTKEVNLTFIKYKKDGGENGNN
Ga0070745_13489081	3300007344	Aqueous	MATVKDLYDLIKKDQLEGKEIGVLEQSILDAVETKQFKTTKEVNITFIKNREGGDNGNS*
Ga0099851_10016362	3300007538	Aqueous	MATIKGIYELIKKDQLEGKEINSFEQAIVDAVEAEQSTTTKEVNFTFIKNKYGGEDGNS*
Ga0099851_10923242	3300007538	Aqueous	MATIKGIYELIKKDQLEGKEINSFEQAIIDAVEAEQSTTTKEVNITFIKNRDRGDNGNS*
Ga0099851_12011441	3300007538	Aqueous	INAKGGNMATIKGIYELIKKDQLEGKKINPFEQAIVDAVEAEQSTTTKEVNITFIKNREGGDNGNS*
Ga0099847_11193741	3300007540	Aqueous	NMATIKGIYELIKKDQLEGKEINQFEQAIVDAVEAEQSPTTKEINLTFIKKKNGGENGNS
Ga0099846_100134811	3300007542	Aqueous	MATIKGIYELIKKDQLEGKKINLFEQAIVDAVEAEQSTTTKEVNLTFIKNKYGGEDGNS*
Ga0102948_10292706	3300007623	Water	MATIKGIYELIKKDQLEGKEIGLFEQSILDAVEAEQSKTTKEVNVTFIKNVNGGDDGNN*
Ga0070751_12920332	3300007640	Aqueous	MATIKGVYELIKKDQLEGKEINSFEQAIVDAVETEQSTTTKEVSLTFIKNKDGGEDGNN*
Ga0102951_10191591	3300007725	Water	MATIKGIYELIKKDQREGKKINSFEQAIVDAVEAEQSTTTKEVKITFIKNKDGGEDGNN*
Ga0102951_10759362	3300007725	Water	MATIKGVYELIKKDQLEGKDIGVLEQSILDAVEAEKSKTTKEVNITFIKNKDGGDNGNS*
Ga0102951_11666072	3300007725	Water	MATIKGIYELIKKDQLEGKEIGLFEQSILDAVEAEQSKTTKEVKVTFIKNVNGGDDGNN*
Ga0099850_13031941	3300007960	Aqueous	MATVKGLYDLIKKDQLEGKEIGVLEQSILDAVETKQFKTTKEVNITFIKNREGGDNGNS*
Ga0075480_104722403	3300008012	Aqueous	MATIKGIYELIKRDQLEGKKINSFEQAIVDAVEAEQSTTTKEVNLTFIKNKDGGEDGHN*
Ga0102960_11064612	3300009000	Pond Water	MATIKGVYELIKKDQLEGKEINSFEQAIVDAVEAEQSTTTKEVNLTFIKNKDGGKDGNC*
Ga0102960_12834183	3300009000	Pond Water	MATIKGIYELIKKDELEGKKINSFEQAIVDAVEAEQSLTTKKVNLTFIKNKDGGKDGHN*
Ga0102960_12844701	3300009000	Pond Water	GGNMATIKGIYELIKKDQLEGKEIGIFEQSILDAVEAEQSKSTKEVHVSFIKNKSSGEGSNGNS*
Ga0102960_13515591	3300009000	Pond Water	MATIKGIYELIKKDQLEGKEINSFEQAIVDAVEAEQSTTTKEVNITFIKNRDRGDNGN
Ga0102963_10298612	3300009001	Pond Water	MATIKGIYELIKKDQLEGKEINSFEQAIVDAVEAEQSTTTKEVNLTFIKNKDRGDDGNS*
Ga0102963_10844043	3300009001	Pond Water	MATIKGIYELIKKDQLEGKEIGIFEQSILDAVEAEQSKSTKEVHVSFIKNKSSGEGSNGNS*
Ga0102963_12826673	3300009001	Pond Water	MATIKGIYELIKKDQLEGKKINSFEQAIVDAVEAEQSPTTKEVNLTFIKNKDGGEDGHN*
Ga0102963_13116011	3300009001	Pond Water	MATIKGVYELIKKDQLEGKDIGVLEQSILDAVEAEKSKTTKEVNITFIKNKDGGDNGNG*
Ga0102963_13500261	3300009001	Pond Water	MATIKGVYELIKKDQLEGKEVNSFEQAIVDAVEAEQSITTKEVNLTFIKNKDGGEDGNC*
Ga0115566_101959551	3300009071	Pelagic Marine	MATIKGIYELIKKDQLEGKEIGLFEQSILDAIEVEKSKTTKEVNVTFIKNVNGGDNGNG*
Ga0115551_12966251	3300009193	Pelagic Marine	IKKDQLEGKEIGLFEQSILDAIEVEKSKTTKEVNVTFIKNVNGGDNGNG*
Ga0115554_14267791	3300009472	Pelagic Marine	MATIKGIYELIKKDQLEGKEIGLFEQSILDAIEVEKSKTTKEVNVTFIKNVNGGD
Ga0115555_10795444	3300009476	Pelagic Marine	MATIKGIYELIKKDQLEGKEIGLFEQSILDAIEVEQSKTTKEVNVTFIKNVNGDDNGNG*
Ga0129345_13008421	3300010297	Freshwater To Marine Saline Gradient	GGNMATIKGIYELIKKDQLEGKEIGLFEQSILDAVEAEQSKTTKEVNVTFIKNVNGGDDGNN*
Ga0129342_10493942	3300010299	Freshwater To Marine Saline Gradient	MATIKGIYELIKKDQLEGKEIGLFEQSILDAVEAEQSKTTKEVNVTFIKNVNGGDNGNN*
Ga0129342_11505211	3300010299	Freshwater To Marine Saline Gradient	MATIKGIYELIKKDQLEGKEINSFEQAIIDAVEAEQSTTTKEVNITFIKN
Ga0129342_12144661	3300010299	Freshwater To Marine Saline Gradient	NMATIKGIYELIKKDQLEGKEINSFEQAIVDAVEAEQSTTTKEVNFTFIKNKYGGEDGNS
Ga0129342_13158931	3300010299	Freshwater To Marine Saline Gradient	MATVKGLYDLIKKDQLEGKEIGVLERSILDAVEAEQSKTTKEVNITFIKNKDGGENGNS*
Ga0129324_100370703	3300010368	Freshwater To Marine Saline Gradient	MATIKGIYELIKKDQLEGKEIGIFEQSILDAVEAEQSKSTKEVNVTFIKNVNGGDNGNN*
Ga0160423_104552202	3300012920	Surface Seawater	MATVKGIYNLIKQDQLKGIKISVIDQAIIDACEADNSKTTKEVNLTFIKYKKDGGENGNN
Ga0163110_106821381	3300012928	Surface Seawater	MATVRGVYNLIKDRQKKGIKIGVLEQAIVDAVEAEQSKTTKEINVTFIKNKKEDDDGNS*
Ga0181552_102132853	3300017824	Salt Marsh	MATIKGIYELIKKDQLEGKEINSFEQAIVDAVEAEQSTTTKEVNITFIKNRDRGDNGNS
Ga0181589_108349811	3300017964	Salt Marsh	MATIKGIYELIKKDQLEGKKINPFEQAIVDEVEAEQSTTTKEVNITFIKNRDRGDNGNS
Ga0181606_101332144	3300018048	Salt Marsh	MATIKGIYKLIKKDQLEGKEIGLFEQSILDAVEAEQSKTTKEVNVTFIKNVNGGDNGNN
Ga0181553_100791243	3300018416	Salt Marsh	MATIKGIYELIKKDQLEGKKINSFEQAIVDAVEAEQSTTTKEVNITFIKNRDRGDNGNS
Ga0181553_105156473	3300018416	Salt Marsh	MATVKGIYELIKKDQLEGKEINSFEQAIVDAVEAEQSTTTKEVNLTFIKNKDGGEDGNN
Ga0181553_106487041	3300018416	Salt Marsh	MATIKGIYELIKKDQLEGKEIGLFEQSILDAVEAEQSKTTKEVHVSFIKNKSSGGGSNDN
Ga0181558_102201143	3300018417	Salt Marsh	MATIKGIYELIKKDQLEGKKINPFEQAIVDAVEAEQSTTTKEVNITFIKNRDRGDNGNS
Ga0181563_104346463	3300018420	Salt Marsh	MATIKGIYELIKKDQLEGKEINSFEQAIVDAVEAEHSTTTKEVNITFIKNRDRGDNGNS
Ga0181564_100407932	3300018876	Salt Marsh	MATIKGIYELIKKDQLEGKKINSFEQAIVDAVEAEQSATTKQVNFTFIKNKDKKD
Ga0181564_102005326	3300018876	Salt Marsh	NNAKGGNMATIKGIYELIKKDQLEGKEIGLFEQSILDAVEAEQSKKTKEVNVTFIKNVNGGDDGNN
Ga0181564_104460481	3300018876	Salt Marsh	MATVKGLYDLIKKDQLKGKEINSFEQAIVDAFEAEQSRTTKEVNISFIKNKDGGDNGNS
Ga0181564_106916423	3300018876	Salt Marsh	MATIKGIYKLIKKDQREGKEINSFEQAIVDAVEAEQSPTTKEINLTFIKNIDGGEDGNN
Ga0194024_11351883	3300019765	Freshwater	MATIKGIYELIKKDQLEGKKINPFEQAIVDAVEAEQSPTTKEINLTFIKNIDGGEDGNN
Ga0181595_103879053	3300020053	Salt Marsh	MATIKGIYELIKKDQLEGKEIGLFEQSILDAVEAEQSKKTKEVNVTFIKNVNGGDDGNN
Ga0211619_10341733	3300020288	Marine	MATIKGIYNLIKQDQLKGIKISVMDQAIIDAVESEQSKTTKEVNLTFIKYKKDGGENGNN
Ga0211666_102134632	3300020392	Marine	MATIKGIYNLIKQDQLKGIKISVMDQAIIDACEAENSKTTKEVNLTFIKYKKDGGENGNN
Ga0211636_101703371	3300020400	Marine	MATVKGIYNLIKQDQLKGIKISVMDQAIIDACEAENSKTTKEVNLTFIQYKKDGGENGNN
Ga0211532_102724562	3300020403	Marine	MATIKGIYNLIKQDQLKGIKISVMDQAIIDACEADNSKTTKEVNLTFIKYKKDGGENGNN
Ga0211651_102712533	3300020408	Marine	MATVKGIYNLIKQDQLKGIKISVMDQAIIDACEADNSKTTKEVNLTFIKYKKDGGENGNN
Ga0211557_104158181	3300020418	Marine	MATVKGIYNLIKQDQLKGIKISVMDQAIIDAVESEQSKTTKEVNLTFIKYKKDGGENGNN
Ga0211565_102250543	3300020433	Marine	IKQDQLKGIKISVMDQAIIDACEAENSKTTKEVNLTFIKYKKDGGENGNN
Ga0211565_103861982	3300020433	Marine	MATIKGIYNLIKQDQLKGIKISVMDQAIIDACEAENSKTTKEVNLTFIKYKKDGSENGNN
Ga0211543_103255521	3300020470	Marine	MATVEGVYNLIKDRQKKGIKIGVLEQAIVDAVESEQSKTTKEVNLTFIKYKKDGGENGNN
Ga0211614_105103802	3300020471	Marine	IYNLIKQDQLKGIKISVMDQAIIDAVESEQSKTTKEVNLTFIKYKKDGGENGNN
Ga0213866_103411552	3300021425	Seawater	MATIKGIYELIKKDQLEGKEIGLFEQSILDAVEAEQSKTTKEVNVTFIKNVNGGDNGNN
Ga0222717_104832421	3300021957	Estuarine Water	ELIKKDQLEGKDIGVLEQSILDAVEAEKSKTTKEVNITFIKNKDGGDNGNS
Ga0222717_106243671	3300021957	Estuarine Water	MATIKGIYELIKKDQLEGKEIGLFEQSILDAVEAEQSKTTKEVNVTFIKNVNGGDDGNN
Ga0222717_106647512	3300021957	Estuarine Water	MATIKGVYELIKKDQLEGKDIGVLEQSILDAVEAEKSKTTKEVNITFIKNKDGGDNGNG
Ga0222718_100785061	3300021958	Estuarine Water	MATIKSIYELIKKDQQEGKEINSFEQAIVDTVEAEQSTTTKEVSLTFIKNKDGGEDGNN
Ga0222718_101081322	3300021958	Estuarine Water	MATIKGIYELIKKDQLEGKEIGIFEQSILDAVEAEQSKSTKEVHVSFIKNKSSGEGSNGN
Ga0222718_105986341	3300021958	Estuarine Water	MATIKGIYELIKKDQLEGKKINPFEQAIVDAVEAEQSTTTKEVSLTFI
Ga0222716_103600382	3300021959	Estuarine Water	MATIKGIYELIKKDQLEGKEINSFEQAIVDAVEAEQSTTTKEVNLTFIKNKDRGDDGNS
Ga0222716_103888163	3300021959	Estuarine Water	MATIKGVYELIKKDQLEGKDMGVLEQSILDAVEAEKSKTTKEVNITFIK
Ga0222715_100415761	3300021960	Estuarine Water	MATIKGVYELIKKDQLEGKEINSFEQAIVDAVEAEQSTTTKEVNLTFIKNKDGGNNGDS
Ga0222715_104368392	3300021960	Estuarine Water	MATIKGIYELIKKDQLEGKKINPFEQAIVDAVEAEQSTTTKEVNITFIKNKDGGDNGNS
Ga0222719_101687871	3300021964	Estuarine Water	MATIKGIYELIKKDQLEGKKINPFEQAIVDAVEAEQSTTTKEVSLTFIKNKDGGEDGNN
Ga0222719_104941842	3300021964	Estuarine Water	MATIKGIYELIKKDQLQGKEINSFEQAIVDAVEAEQSTSTKEVNLTFIKNKDLGNNGNS
Ga0212031_10924191	3300022176	Aqueous	AKGGNMATIKGIYELIKKDQLEGKEINSFEQAIIDAVEAEQSTTTKEVNITFIKNRDRGDNGNS
Ga0196901_11832523	3300022200	Aqueous	MATIKGIYELIKKDQLEGKEINSFEQAIIDAVEAEQSTTTKEVNITFIKNRDRGDNGNS
Ga0255755_13316001	3300022909	Salt Marsh	MATIKGIYELIKKDQLEGKEINSFEQAIVDAVEAEQSTSTKEVNLTFIKNRDRGEDGNS
Ga0255758_103186213	3300022928	Salt Marsh	NMATIKGIYELIKKDQLEGKEIGLFEQSILDAVEAEQSKTTKEVNVTFIKNVNGGDDGNN
Ga0255763_12097902	3300023273	Salt Marsh	MATIKGIYKLIKKDQLEGKEINSFEQAIVDAVEAEQSTTTKEVNITFIKNRDRGDNGNS
Ga0208795_10332492	3300025655	Aqueous	MATIKGIYELIKKDQLEGKEINSFEQAIVDAVEAEQSTTTKEVNFTFIKNKYGGEDGNS
Ga0208795_11088971	3300025655	Aqueous	GNMATIKGIYELIKKDQLEGKEINSFEQAIVDAVEAEQSTTTKEVNITFIKNRDRGDNGN
Ga0208019_100207519	3300025687	Aqueous	NAKGGNMATIKGIYELIKKDQLEGKEINSFEQAIVDAVEAEQSTTTKEVNFTFIKNKYGGEDGNS
Ga0209653_10220716	3300025695	Marine	MATIKGIYELIKKDQLEGKKINSFEQAIVDAVEAEQSTTTKEANLTFIKNKDGGKDGYN
Ga0209653_10372406	3300025695	Marine	MATIKGIYELIKKDQLEGKEIGLFEQSILDAVEAEQSKTTKEVNVTFIKDVNGVDDGNN
Ga0209653_11201333	3300025695	Marine	MATIKGIYELIKKDQLEGKEINSFEQAIVNAVEAEQSTTTKEVNIAFIKNKDGGEDGNC
Ga0209653_11516011	3300025695	Marine	IYELIKKDQQEGKEINSFEQAIVDAVEAEQSTTTKEVNLTFIKNKYGGEDGNS
Ga0209555_100931224	3300025879	Marine	MATIKGIYELIKKDQREGKKINSFEQTIVDAVEAEQSPITKEVNLTFIKNKDGGEDGHN
Ga0208644_10432461	3300025889	Aqueous	MATIKGIYELIKKDQLEGKEINSFEQAIVDAVEAEQSTTTKEVNITFVKNRDRGDNGNS
Ga0209951_11325801	3300026138	Pond Water	MATIKGIYELIKKDQREGKKINSFEQAIVNAVEAEQSPTTKEVNLTFIKNKDGGEDGHN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094569

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences