Metagenome Family F094512

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F094512
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	72 residues
Representative Sequence	MMEFLFQVTLLASIRVKAETQAEAELKLRSALEASEANLGMLDDAPIVVPVEIEGDLDLIEAMENTGEE
Number of Associated Samples	76
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.47 %
% of genes near scaffold ends (potentially truncated)	22.64 %
% of genes from short scaffolds (< 2000 bps)	73.58 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (74.528 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (20.755 % of family members)
Environment Ontology (ENVO)	Unclassified (35.849 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.981 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 14.43% β-sheet: 0.00% Coil/Unstructured: 85.57%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00589	Phage_integrase	30.19
PF12599	DUF3768	4.72
PF00004	AAA	3.77
PF00106	adh_short	1.89
PF01569	PAP2	1.89
PF01243	Putative_PNPOx	1.89
PF12728	HTH_17	1.89
PF01841	Transglut_core	0.94
PF02146	SIR2	0.94
PF13700	DUF4158	0.94
PF01526	DDE_Tnp_Tn3	0.94
PF02665	Nitrate_red_gam	0.94
PF00648	Peptidase_C2	0.94
PF07183	DUF1403	0.94
PF02613	Nitrate_red_del	0.94
PF08281	Sigma70_r4_2	0.94
PF00149	Metallophos	0.94
PF13561	adh_short_C2	0.94
PF07167	PhaC_N	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0846	NAD-dependent protein deacetylase, SIR2 family	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG2180	Nitrate reductase assembly protein NarJ, required for insertion of molybdenum cofactor	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG2181	Nitrate reductase gamma subunit	Energy production and conversion [C]	0.94
COG3243	Poly-beta-hydroxybutyrate synthase	Lipid transport and metabolism [I]	0.94
COG4644	Transposase and inactivated derivatives, TnpA family	Mobilome: prophages, transposons [X]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.47 %
Unclassified	root	N/A	24.53 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.53 %
Unclassified	root	N/A	24.53 %
Viruses	superkingdom	All Organisms → Viruses	0.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.53 %
Unclassified	root	N/A	24.53 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	66.98 %
Unclassified	root	N/A	24.53 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	65.09 %
Unclassified	root	N/A	24.53 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	48.11 %
Unclassified	root	N/A	24.53 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	39.62 %
Unclassified	root	N/A	24.53 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.94 %
Roseiarcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	39.62 %
Unclassified	root	N/A	24.53 %
Roseiarcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus	0.94 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	38.68 %
Unclassified	root	N/A	24.53 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.94 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	37.74 %
Unclassified	root	N/A	24.53 %
Bradyrhizobium sp. LTSP857	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP857	0.94 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.94 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001546\|JGI12659J15293_10000138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	22327	Open in IMG/M
3300001593\|JGI12635J15846_10091225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2205	Open in IMG/M
3300004080\|Ga0062385_10340733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	875	Open in IMG/M
3300004080\|Ga0062385_10445143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	786	Open in IMG/M
3300004082\|Ga0062384_101177925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	556	Open in IMG/M
3300004091\|Ga0062387_100878721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	676	Open in IMG/M
3300004092\|Ga0062389_102688137	Not Available	663	Open in IMG/M
3300004092\|Ga0062389_104122337	Not Available	546	Open in IMG/M
3300004152\|Ga0062386_100091817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2327	Open in IMG/M
3300004152\|Ga0062386_100574427	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300006052\|Ga0075029_100238457	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300006059\|Ga0075017_100314874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1159	Open in IMG/M
3300009510\|Ga0116230_10661288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	786	Open in IMG/M
3300009520\|Ga0116214_1155209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	853	Open in IMG/M
3300009522\|Ga0116218_1498623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	543	Open in IMG/M
3300009618\|Ga0116127_1176205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	525	Open in IMG/M
3300009635\|Ga0116117_1034078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1262	Open in IMG/M
3300009639\|Ga0116122_1118985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	851	Open in IMG/M
3300009665\|Ga0116135_1498419	Not Available	505	Open in IMG/M
3300009683\|Ga0116224_10464913	Not Available	603	Open in IMG/M
3300009698\|Ga0116216_10156935	Not Available	1399	Open in IMG/M
3300009698\|Ga0116216_10275832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1026	Open in IMG/M
3300009700\|Ga0116217_10771223	Not Available	593	Open in IMG/M
3300010339\|Ga0074046_10222966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1179	Open in IMG/M
3300010339\|Ga0074046_10344378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	908	Open in IMG/M
3300010341\|Ga0074045_10202745	All Organisms → cellular organisms → Bacteria	1327	Open in IMG/M
3300010343\|Ga0074044_10887256	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300010379\|Ga0136449_100105338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5761	Open in IMG/M
3300010379\|Ga0136449_100125026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5147	Open in IMG/M
3300010379\|Ga0136449_103328118	Not Available	617	Open in IMG/M
3300010379\|Ga0136449_104613632	Not Available	505	Open in IMG/M
3300014152\|Ga0181533_1042365	All Organisms → cellular organisms → Bacteria	2451	Open in IMG/M
3300014153\|Ga0181527_1019193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4476	Open in IMG/M
3300014159\|Ga0181530_10435146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	662	Open in IMG/M
3300014495\|Ga0182015_10417081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	864	Open in IMG/M
3300014501\|Ga0182024_10006700	All Organisms → cellular organisms → Bacteria → Proteobacteria	25162	Open in IMG/M
3300014501\|Ga0182024_10024950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10588	Open in IMG/M
3300014501\|Ga0182024_10436136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1684	Open in IMG/M
3300014501\|Ga0182024_10770419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1177	Open in IMG/M
3300014638\|Ga0181536_10042143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	3139	Open in IMG/M
3300017935\|Ga0187848_10066982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1690	Open in IMG/M
3300017943\|Ga0187819_10698854	Not Available	572	Open in IMG/M
3300018002\|Ga0187868_1263356	Not Available	578	Open in IMG/M
3300018034\|Ga0187863_10503168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	678	Open in IMG/M
3300018035\|Ga0187875_10733160	Not Available	518	Open in IMG/M
3300018037\|Ga0187883_10208546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1002	Open in IMG/M
3300019786\|Ga0182025_1011766	Not Available	1429	Open in IMG/M
3300021407\|Ga0210383_11345955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	596	Open in IMG/M
3300027604\|Ga0208324_1005364	All Organisms → cellular organisms → Bacteria	4467	Open in IMG/M
3300027692\|Ga0209530_1024801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1804	Open in IMG/M
3300027696\|Ga0208696_1115639	Not Available	883	Open in IMG/M
3300027698\|Ga0209446_1011780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2144	Open in IMG/M
3300027701\|Ga0209447_10008575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2987	Open in IMG/M
3300027729\|Ga0209248_10008722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3198	Open in IMG/M
3300027767\|Ga0209655_10012134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2911	Open in IMG/M
3300027795\|Ga0209139_10007775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4035	Open in IMG/M
3300027795\|Ga0209139_10094107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1054	Open in IMG/M
3300027812\|Ga0209656_10020017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	4100	Open in IMG/M
3300027812\|Ga0209656_10138818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1231	Open in IMG/M
3300027824\|Ga0209040_10055903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2359	Open in IMG/M
3300027824\|Ga0209040_10260833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	864	Open in IMG/M
3300027824\|Ga0209040_10292990	Not Available	796	Open in IMG/M
3300027829\|Ga0209773_10017225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2815	Open in IMG/M
3300027895\|Ga0209624_10001663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	17189	Open in IMG/M
3300027905\|Ga0209415_10127178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2662	Open in IMG/M
3300027908\|Ga0209006_10153106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2023	Open in IMG/M
3300028759\|Ga0302224_10370766	Not Available	580	Open in IMG/M
3300028780\|Ga0302225_10197388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	968	Open in IMG/M
3300029945\|Ga0311330_10598998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	867	Open in IMG/M
3300029951\|Ga0311371_10700361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1273	Open in IMG/M
3300029951\|Ga0311371_12137569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	587	Open in IMG/M
3300029952\|Ga0311346_11028608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	662	Open in IMG/M
3300029952\|Ga0311346_11337944	Not Available	547	Open in IMG/M
3300029954\|Ga0311331_10268082	All Organisms → cellular organisms → Bacteria	1855	Open in IMG/M
3300030043\|Ga0302306_10390991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	531	Open in IMG/M
3300030058\|Ga0302179_10270266	Not Available	749	Open in IMG/M
3300030399\|Ga0311353_11189202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	630	Open in IMG/M
3300030399\|Ga0311353_11550005	Not Available	536	Open in IMG/M
3300030494\|Ga0310037_10093135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1402	Open in IMG/M
3300030503\|Ga0311370_11298541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	779	Open in IMG/M
3300030503\|Ga0311370_11495986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	707	Open in IMG/M
3300030520\|Ga0311372_11185112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	981	Open in IMG/M
3300030520\|Ga0311372_11753107	Not Available	745	Open in IMG/M
3300030580\|Ga0311355_11677567	Not Available	543	Open in IMG/M
3300030580\|Ga0311355_11683729	Not Available	542	Open in IMG/M
3300030618\|Ga0311354_10112195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	3029	Open in IMG/M
3300030618\|Ga0311354_10948859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	798	Open in IMG/M
3300030618\|Ga0311354_11736979	Not Available	544	Open in IMG/M
3300030906\|Ga0302314_11690648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	560	Open in IMG/M
3300031234\|Ga0302325_10952057	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300031236\|Ga0302324_101521719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	868	Open in IMG/M
3300031525\|Ga0302326_11665802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	844	Open in IMG/M
3300031525\|Ga0302326_13471015	Not Available	525	Open in IMG/M
3300031708\|Ga0310686_101908323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1380	Open in IMG/M
3300031708\|Ga0310686_104496597	Not Available	646	Open in IMG/M
3300031708\|Ga0310686_116587451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	836	Open in IMG/M
3300032160\|Ga0311301_10089483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6177	Open in IMG/M
3300032160\|Ga0311301_10112952	All Organisms → cellular organisms → Bacteria → Proteobacteria	5192	Open in IMG/M
3300032160\|Ga0311301_10237775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	3031	Open in IMG/M
3300032160\|Ga0311301_11215229	Not Available	964	Open in IMG/M
3300032515\|Ga0348332_12369840	Not Available	543	Open in IMG/M
3300033402\|Ga0326728_10064644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP857	4990	Open in IMG/M
3300033402\|Ga0326728_10150185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2530	Open in IMG/M
3300033755\|Ga0371489_0109031	All Organisms → Viruses → Predicted Viral	1595	Open in IMG/M
3300033983\|Ga0371488_0142661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1265	Open in IMG/M
3300034091\|Ga0326724_0418858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	705	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.06%
Host-Associated	Host-Associated	0.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.09%
Aquatic	Environmental → Aquatic	33.96%
Plants	Host-Associated → Plants	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	34.91%
Freshwater	Environmental → Aquatic → Freshwater	32.08%
Peat	Environmental → Terrestrial → Peat	29.25%
Sediment	Environmental → Aquatic → Sediment	1.89%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.94%
Peat Moss	Host-Associated → Plants → Peat Moss	0.94%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	32.08%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	29.25%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.43%
Loam	Environmental → Terrestrial → Soil → Loam	4.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	29.25%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	27.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.72%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.89%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.94%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	20.75%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	18.87%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	16.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.72%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.72%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	4.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.77%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.77%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.94%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.94%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300009510	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009618	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M
3300033983	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12659J15293_1000013825	3300001546	Forest Soil	MELTMTEFTFQATLLASIRVMADTQAEAELKVRAALEASDANLGMLDGAPIVVPVEIEGELDLIETIENTSED*
JGI12635J15846_100912251	3300001593	Forest Soil	MADTQAEAELKVRAALEASDANLGMLDGAPIVVPVEIEGELDLIETIENTSED*
Ga0062385_103407332	3300004080	Bog Forest Soil	MTEFTFQATLLASIRVKAKTQAEAELKLRTALEGSDANLGMLDDAPIVVPVEIEGDLDLIDTIESASEE*
Ga0062385_104451431	3300004080	Bog Forest Soil	MREFTLQATLIATIRVTAETRAEAERKLRAALEASDANLGMLDDEPIVVPVEIEGDLDLIETREDTGEEP*
Ga0062384_1011779251	3300004082	Bog Forest Soil	MEFLFQVTLLASIRVKAETQAEAEQKLRAALEASEANLGMLDDRPIVRPVEIEGDLDLIEALENAGEE*
Ga0062387_1008787211	3300004091	Bog Forest Soil	MMEFLFQVTLLASIRVKAETQAEAELKLRAALEASEANLGMLDDTPIVVPVEIEGDLDLIEALENTGEE*
Ga0062389_1026881371	3300004092	Bog Forest Soil	MTEFTFQATLLASIRVMADTQAEAELKVRAALEASDANLGMLDGAPIVVPVEIEGELDLIETIENTSED*
Ga0062389_1041223372	3300004092	Bog Forest Soil	EFTFQATLLASIRVKAKTQAEAELKLRTALEGSDANLGMLDDAPIVVPVEIEGDLDLIDTIESASEE*
Ga0062386_1000918171	3300004152	Bog Forest Soil	MKEFTFQATLLASIRVKAKTRAEAELKLRTALEGSDANLGMLDDAPIVVPVEIEGDLDLIDTIESTSEE*
Ga0062386_1005744272	3300004152	Bog Forest Soil	MMEFMFHVITRVDPRQAETHAEAEQLSAALEGSEANLGMLGDTPIVVPVEIEGDLDLIEAIENAGEE*
Ga0075029_1002384572	3300006052	Watersheds	MREFLFQVTLLASIRVKAETQGEAELKLGAALEASEANLGMLDDTPIVVPVEIEGDLDLIEALENTGEE*
Ga0075017_1003148741	3300006059	Watersheds	MTEFTFQVTLLASIRVKAETQGEAELKLGAALEASEANLGMLDDTPIVVPVEIEGDLDLIEALENTGEE*
Ga0116230_106612881	3300009510	Host-Associated	MREFALQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGDLDLIETREGTGEEPSASRATGCFARGICRSW*
Ga0116214_11552092	3300009520	Peatlands Soil	MSEFMFQVTLLASIRVKAETQAEAELKLRAALEASEANLGMLDDTPIVVPVEIEGDLDLIEATENTGEE*
Ga0116218_14986231	3300009522	Peatlands Soil	MMEFLFQVTLLASIRVKAETQAEAELKLRSALEASEANLGMLDDAPIVVPVEIEGDLDLIEAMENTGEE*
Ga0116127_11762052	3300009618	Peatland	MREFTFQATLLASIRVKAETRAEAEEKLRMALAVSDANLGMLDDALIVVPVEIEGDL
Ga0116117_10340782	3300009635	Peatland	MREFTLQATLIATIRVKAETRAEADQKLHSVLAASDANLGMLDDEPIVVPVEVEGDLDLIETCEDTGEEPLRKWSK*
Ga0116122_11189853	3300009639	Peatland	MREFTFQATLIASIRVKAETRAEAEQKLRVALAASDANLGMLDGAPIVVPVEIEGDLDLIETMESTGEEWRL*
Ga0116135_14984191	3300009665	Peatland	MCNKSTLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGDLDLIETREGTGEEPSASRATGCFARGICRSR*
Ga0116224_104649131	3300009683	Peatlands Soil	MMEFLFQVTLLASIRVKAETQAEAELKLRSALEASEANLGMLDDTPIVVPVEIEGDLDLIEALENTGEE*
Ga0116216_101569351	3300009698	Peatlands Soil	KGPAMMEFLFQVTLLASIRVKAETQAEAELKLRAALEASEANLGMLDDTPIVVPVEIEGDLDLIEATENTGEE*
Ga0116216_102758322	3300009698	Peatlands Soil	MMEFLFQVTLLASIRVNAETQAEAELKLRGALEASEANLGMLDDTPIVVPVEIEGDLDLLEAMENTGEE*
Ga0116217_107712232	3300009700	Peatlands Soil	MMEFLFQVTLLASIPVKAETQGEAELKLRSALEASAANLGMLDDTPIVVPVAIEGDLDLIEALENTGEE*
Ga0074046_102229663	3300010339	Bog Forest Soil	MMREFLFHATLLVSIRVKAETQAEAELKLREALSASDANLGMLDDAPIVVPVEIEGDLDLVETI*
Ga0074046_103443781	3300010339	Bog Forest Soil	MMREFLFHATLLASIRVKAETQAEAELKLREALSASDANLGMLDDAPIVVPVEIEGD
Ga0074045_102027453	3300010341	Bog Forest Soil	MEFLIQVTLLASIPVKAETQAEAELKLRSALEASEANLGMLDDTPIVVPVEIEGDLDLIEALENTGEE*
Ga0074044_108872562	3300010343	Bog Forest Soil	VDASNVEDRFARKEPAMMEFLFHVTLLASIRVKAETQAEAELKLRTALEASEANLGMLDDTPIVVPVEIEGDLDLIEAIENAGEE*
Ga0136449_1001053385	3300010379	Peatlands Soil	MTEFTFQATLLASIRVKAETQAEAEQKLRAALEASEANLGTLDDAPIVVPVEIEGDLDLIE*
Ga0136449_1001250262	3300010379	Peatlands Soil	MMEFLFQVTLLASIRVKAETQAEAELKLRSALEASEANLGMLDDRPIVVPVEIEGDLDLIEALENTGEE*
Ga0136449_1033281181	3300010379	Peatlands Soil	MKEYVFQATLIASIGVKAETRAEADLKLRAALAASEANLGMLDNEPIVCTVEVEGDLDLIEICERSGDE*
Ga0136449_1046136321	3300010379	Peatlands Soil	MKEFTFQATLLASIRVKAETRAEAEQKLRAALMASKANLEMLDATPIVVPVEIEGDLDLIETIESAGEE*
Ga0181533_10423653	3300014152	Bog	EPVMREFTFQATLLASIRVTAETRAEAEQKLRVALAASDASLGMLDDAPVVVPVEIEGDLDLIETVESAGEEWRL*
Ga0181527_10191932	3300014153	Bog	MREFTFQATLLASIRVTAETRAEAEQKLRVALAASDASLGMLDDAPVVVPVEIEGDLDLIETVESAGEEWRL*
Ga0181530_104351461	3300014159	Bog	MREFTFQATLLASIRVKAETRAEAEQKLRVALAASDANLGMLDDAPVVVPVEIEGDLDLTETMESAGEEWRS*
Ga0182015_104170812	3300014495	Palsa	MPEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAARDASLGTLDDEPIVVPVEVEGDLDLIETCEDTSAGPLSK*
Ga0182024_1000670018	3300014501	Permafrost	MERPTPPCPSVETQRESIMKEFTFQATLIASICVEAETQAEAEQKLRVALAASDANLGMLDDAPLVVSVEIEGDLDLIEIMESSGR*
Ga0182024_100249508	3300014501	Permafrost	MTEFTFQATLLASIRVRAETQAEAERKLRAALEAADATLGRLDGSPIVVPVEIEGDLDLIETAEYPREK*
Ga0182024_104361362	3300014501	Permafrost	MREFTLQATLIATIRVKAETRAEAEQKLHSVLAARDASLGTLDDEPIVVPVEVEGELDLIETSEETGEKPVSRATDCSARRMCRSR*
Ga0182024_107704191	3300014501	Permafrost	MKEFTLQATLIATIRVKAETRAEAELKLRGALEASDANLGTLDDEPIVVPVEIEGDFDLIETTEDPGEEPLRN*
Ga0181536_100421436	3300014638	Bog	MREFTFQATLLASIRVKAETRAEAEQKLRVALAASDANLGMLDDAPVVVPVEIEGDLDLIETMESTGEEWRL*
Ga0187848_100669823	3300017935	Peatland	MREFTFQATLLASIRVTAETRAEAEQKLRVALAASDASLGMLDDAPVVVPVEIEGDLDLIETVESAGEEWRL
Ga0187819_106988542	3300017943	Freshwater Sediment	MMEFLFQVTLLASIRVKAEMQAEAELKLRAALEASEANLGMLDDTPIVVPVEIEGDLDLIEAMDNTGEE
Ga0187868_12633561	3300018002	Peatland	MREFTFQATLIASIRVKAETRAEAEQKLRVALAASDANLGMLDDAPIVVPVEIEGDLDLIETVESAGEEWRL
Ga0187863_105031681	3300018034	Peatland	MPEGNQVMREFTLQATLIATIRVKAETEAEAELKLRAALDASEANLGMLDDTPIVVPVEIEGDLDLIEAMENTGEGIVTSSK
Ga0187875_107331601	3300018035	Peatland	MMEFLFQVTLLASIRVKAETQAEAELKLRAALESSEANLGMLDETPIVVPVEIEGDLDLIEAMENTGED
Ga0187883_102085462	3300018037	Peatland	MREFLFQVTLLASIRVKAETEAEAELKLRAALDASEANLGMLDDTPIVVPVEIEGDLDLIEAMENTGEGIVTSSK
Ga0182025_10117662	3300019786	Permafrost	MKEFTFQATLIASICVEAETQAEAEQKLRVALAASDANLGMLDDAPLVVSVEIEGDLDLIEIMESSGR
Ga0210383_113459551	3300021407	Soil	MTEFTFQVTLLGSIRVKAKTQAEAELKLRTALEESDANLGMLDDAPIVVPVEIEGDLDLIEAMENTGEE
Ga0208324_10053643	3300027604	Peatlands Soil	MFQVTLLASIRVKAETQAEAELKLRAALEASEANLGTLDDAPIVVPVEIEGDLDLIE
Ga0209530_10248012	3300027692	Forest Soil	MADTQAEAELKVRAALEASDANLGMLDGAPIVVPVEIEGELDLIETIENTSED
Ga0208696_11156392	3300027696	Peatlands Soil	MSEFMFQVTLLASIRVKAETQAEAELKLRAALEASEANLGMLDDTPIVVPVEIEGDLDLIEATENTGEE
Ga0209446_10117801	3300027698	Bog Forest Soil	GTLRSASKTLIERPRAMCNKSMLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGELDLIETCEDTGKEPLRK
Ga0209447_100085754	3300027701	Bog Forest Soil	LIERPRAMCNKSMLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGELDLIETCEDTGEEPLRK
Ga0209248_100087221	3300027729	Bog Forest Soil	LIERPRAMCNKSMLEGNQVMREFTLQATLIATICVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGELDLIETCKDTGEEPLRK
Ga0209655_100121343	3300027767	Bog Forest Soil	MCNKSMLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGELDLIETCEDTGEEPLRK
Ga0209139_100077754	3300027795	Bog Forest Soil	MCNKSMLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGELDLIETCEDAGKEPLRK
Ga0209139_100941072	3300027795	Bog Forest Soil	MIEFTLQATLIATIRVTAETRAEAERKLRAALEASDANLGMLDDEPIVVPVEIEGDLDLIETREDTGEEP
Ga0209656_100200173	3300027812	Bog Forest Soil	MMEFTFQATLLASIRVKADTEAEAEQKLRAALMASEANLGMLDDTPIVVPVEIEGELDLSETIESTGEK
Ga0209656_101388182	3300027812	Bog Forest Soil	MMEFTFQATLLASIRVKADTEAEAEQKLRAALMASEANLGMLDDTPIVVPVEIEGDLDLSETIESTVEE
Ga0209040_100559032	3300027824	Bog Forest Soil	MREFLFQATLLASIRVRAETQAEAELKLREALSASDANLGMLDDAPIVVPVEIEGDLDLVGTI
Ga0209040_102608333	3300027824	Bog Forest Soil	MMREFLFQATLLASIRVKAETQAEAELKLREALSASDANLGMLDDAPIVVPVEIEGDLDLVETI
Ga0209040_102929902	3300027824	Bog Forest Soil	MMREFLFHATLLASIRVKAETQAEAELKLREALSASDANLGMLDDAPIIVPVEIEGDLDLVEII
Ga0209773_100172253	3300027829	Bog Forest Soil	MCNNSMLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGELDLIETCEDTGEGPLRK
Ga0209624_100016632	3300027895	Forest Soil	MTEFTFQATLLASIRVMADTQAEAELKVRAALEASDANLGMLDGAPIVVPVEIEGELDLIETIENTSED
Ga0209415_101271784	3300027905	Peatlands Soil	MKEYVFQATLIASIGVKAETRAEADLKLRAALAASEANLGMLDNEPIVCTVEVEGDLDLIEICERSGDE
Ga0209006_101531061	3300027908	Forest Soil	MRRSGTLRSASKTLIERPRAMCNKSMLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGELDLIETCEDTGEEPLRK
Ga0302224_103707661	3300028759	Palsa	MMEFTFQVTLIASIRVKAKTRAQAEHKLREALAASDANLGMLDDAPIVVTIEIEGDLDLIDAVESGCVQWPPPAPPLHS
Ga0302225_101973882	3300028780	Palsa	MMEFTFQVTLIASIRVKAKTRAQAEHKLREALAASDANLGMLDEKPIVVTVEIEGDLDLIDAVEGACG
Ga0311330_105989982	3300029945	Bog	MREFTLQATLIATIRVKAETRAKAEQKLHAALAASDANLGTLDDEPIVVPVEVEGDLDLIETCEDTSAGP
Ga0311371_107003611	3300029951	Palsa	MSMYRFQVTLLASIAVEANASVEAERKLREALSASDANLGMLNDEPIVATLEIEGELDLI
Ga0311371_121375691	3300029951	Palsa	VTEFTFQVTLIASIHVKAETRADAEHKLREALAASDVNLGMLDDEPIVVAIEIEGDLDLIDAVQSAGGDPLRVLSL
Ga0311346_110286081	3300029952	Bog	MKEFTLQATLIATIRVKAETRAEAEQKLRAALEASDANLGMLDGEPIVVPVEIEGDLDLIETSE
Ga0311346_113379441	3300029952	Bog	SISVNAETSDEADSKLRTALATSDARLGILDGEPIVVPVEIEGDLDLI
Ga0311331_102680822	3300029954	Bog	MREFTLQATLIATIRVKAETRAKAEQKLHAALAASDANLGTLDDEPIVVPVEVEGDLDLIETCEDTSAGPLSK
Ga0302306_103909912	3300030043	Palsa	MMEFTFQVTLIASIRVKAKTRAQAEHKLREALAASDANLGMLDEKPIVVTVEIEGD
Ga0302179_102702661	3300030058	Palsa	NSVSVLSTEPNMMEFTFQVTLIASIRVKAKTRAQAEHKLREALAASDANLGMLDEKPIVVTVEIEGDLDLIDAVEGACG
Ga0311353_111892022	3300030399	Palsa	MMEFTFQVTLIASIRVKAKTRAQAEHKLREALAASDANLGMLDDAPIVVTIEIEGDLDLIDAVESACVQWPPPAPPLHS
Ga0311353_115500051	3300030399	Palsa	MREFAFQVTLIATIRVKAETRAEAERKLHAALAASDANLGMLDDEPIVVPVEVEGDLDLIETCEDTGEEPLRK
Ga0310037_100931352	3300030494	Peatlands Soil	MMEFLFQVTLLASIRVNAETQAEAELKLRGALEASEANLGMLDDTPIVVPVEIEGDLDLLEAMENTGEE
Ga0311370_112985412	3300030503	Palsa	MTEFTFQVTLVASIRVKAVTTADAEHKLREALARSDANLGMLDDQPIVVTIEIEGDLDLIDAVEGAYG
Ga0311370_114959861	3300030503	Palsa	MTEFTFQVTLIASIRVRAETTADAEHKLREALAASHANLGMLDDQPIVVTIEIEGDLDLI
Ga0311372_111851122	3300030520	Palsa	MKEYTLQATLLASIRVKAKTSAEAEQKLRAALAVSDANLGMLDDAPIVVPVEIEGDLDLIETKEAPGATSTAN
Ga0311372_117531072	3300030520	Palsa	MCNKSILEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGDLDLIETCEDTGEEPLRK
Ga0311355_116775671	3300030580	Palsa	VRAETTADAEHKLREALAASHANLGMLDDKPIVVTAEIEGDLDLIDAVEGACGEPLRVLSLKVQTHSQPERHTCG
Ga0311355_116837291	3300030580	Palsa	QVMKEFTLQATLIATIRVKAETRAEAEQRLRAALEASSDANLGMLDDEPIVVPVEIEGDFDLIETTEDPGEEPLRN
Ga0311354_101121952	3300030618	Palsa	MMEFTFQVTLIASIRVKAKTRAQAEHKLREALAASDANLGMLDEKPIVVTVEIEGDLDMIDAVEGACG
Ga0311354_109488592	3300030618	Palsa	MKEFTLQATLIATIRVKAETRAEAELKLRGALEASDANLGTLDDEPIVVPVEIEGDLDLIETREDTGEEPRDN
Ga0311354_117369791	3300030618	Palsa	FSREPNMTEFTFQVTLIASIHVKAETRADAEHKLREALAASDANLGMLDDEPIVVAIEIEGDLDLIDAVQSAGGEPLRVLSL
Ga0302314_116906481	3300030906	Palsa	MKEYTLQATLLASIRVKAKTSAEAEQKLRTALAVSDANLGMLDDAPIVVPVEIEGDLDLIETKEAPGATSTAN
Ga0302325_109520572	3300031234	Palsa	VTEFTFQVTLIASIHVKAETRADAEHKLREALAASDANLGMLDDEPIVVAIEIEGDLDLIDAVQSAGGEPLRVLSL
Ga0302324_1015217192	3300031236	Palsa	MREFTLQATLIATIRVEAETRAEAERKVRAALAASDANLGTLDDEPIVVPVEIEGDLDLIETSGSPGEQPLGK
Ga0302326_116658022	3300031525	Palsa	MSIKSMLEGKQVMKEFTLQATLIATIRVKAETRAEAEQRLRAALEASSDANLGMLDDEPIVVPVEIEGDFDLIETTEDPGEEPLRN
Ga0302326_134710152	3300031525	Palsa	MMEFLFQVTLLASIRVKAETQAEAELKLRAALEGPEANLGVLDDMPIVAPVEIEGDLDLIEAMENAGEE
Ga0310686_1019083233	3300031708	Soil	MCNKSMLEGNQVMREFTLQATLIATICVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGESDLIETCEDTGEEPLRK
Ga0310686_1044965972	3300031708	Soil	ERPHAMCNKSMLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGMLDDEPIVVPVEIEGELDLIETCEDTGEEPLPE
Ga0310686_1165874511	3300031708	Soil	MREFTLQATLIATIRVKAETRAEAEQKLRAALEASDANLGTFDDEPIVVPVEIEGDLDLIETREDTGEDSLRK
Ga0311301_100894834	3300032160	Peatlands Soil	MTEFTFQATLLASIRVKAKTQAEAELKLRTALEGADANLGMLDDAPIVVPVEIEGDLDLIDTIESASEE
Ga0311301_101129527	3300032160	Peatlands Soil	MMEFLFQVTLLASIRVKAETQAEAELKLRSALEASEANLGMLDDRPIVVPVEIEGDLDLIEALENTGEE
Ga0311301_102377754	3300032160	Peatlands Soil	MTEFTFQATLLASIRVKAETQAEAEQKLRAALEASEANLGTLDDAPIVVPVEIEGDLDLI
Ga0311301_112152292	3300032160	Peatlands Soil	KRPAMMEFLFQVTLLASIPVKAETQAEAELKLRSALEASEANLGMLDDAPIVVPVEIEGDLDLIEAMENTGEE
Ga0348332_123698401	3300032515	Plant Litter	MCNKSMLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGDLDLIETCENTGEEPLRK
Ga0326728_100646445	3300033402	Peat Soil	MTEFTFQATLLASIRVQVETRAEAEQKLRVALAVSDANLGMLDDAPIVVPVEIEGDLDLIETMESAGEESPRG
Ga0326728_101501852	3300033402	Peat Soil	MTEFTFQATLLASIRVTAETRAEAEQKLRVALAASDANLGMLDDAPVVVPVEIEGDLDLIETVESAGEEWRL
Ga0371489_0109031_1411_1593	3300033755	Peat Soil	SIRVNAETRAEAEQKLRVALAASDANLGMLDDAPIVVPVEIEGDLDLIETMESAGEEWRL
Ga0371488_0142661_539_757	3300033983	Peat Soil	MREFTFQATLLASIRVNAETRAEAEQKLRVALAASDANLGMLDDAPIVVPVEIEGDLDLIETMESAGEEWRL
Ga0326724_0418858_1_198	3300034091	Peat Soil	MREFTFQATLLASIRVNAETRAEAEQKLRVALAASDANLGMLDDAPIVVPVEIEGDLDLIETMESA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094512

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences