Metagenome / Metatranscriptome Family F094478

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094478
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	121 residues
Representative Sequence	MIENGEPAEISASSTAAPSCYRVSVLSGSLEISARLKDADDLELLMRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTLT
Number of Associated Samples	97
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	59.43 %
% of genes near scaffold ends (potentially truncated)	41.51 %
% of genes from short scaffolds (< 2000 bps)	88.68 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (59.434 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.642 % of family members)
Environment Ontology (ENVO)	Unclassified (21.698 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (33.962 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.09% β-sheet: 9.40% Coil/Unstructured: 76.51%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01869	BcrAD_BadFG	20.75
PF00188	CAP	0.94
PF00285	Citrate_synt	0.94
PF00115	COX1	0.94
PF00024	PAN_1	0.94
PF00903	Glyoxalase	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0372	Citrate synthase	Energy production and conversion [C]	0.94
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
All Organisms	root	All Organisms	40.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
cellular organisms	root	All Organisms → cellular organisms	40.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	39.62 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	35.85 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	32.08 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.94 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	21.70 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	7.55 %
Chitinophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia	0.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	21.70 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	7.55 %
Chitinophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales	0.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	21.70 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	7.55 %
Chitinophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	0.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	21.70 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	7.55 %
Terrimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Terrimonas	0.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.43 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	21.70 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	7.55 %
Terrimonas ferruginea	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Terrimonas → Terrimonas ferruginea	0.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_876868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1534	Open in IMG/M
2189573004\|GZGWRS402HC52S	Not Available	527	Open in IMG/M
3300000043\|ARcpr5yngRDRAFT_c011963	Not Available	732	Open in IMG/M
3300000953\|JGI11615J12901_10259071	Not Available	720	Open in IMG/M
3300003349\|JGI26129J50193_1016126	Not Available	551	Open in IMG/M
3300004643\|Ga0062591_101381932	Not Available	697	Open in IMG/M
3300005162\|Ga0066814_10034056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	777	Open in IMG/M
3300005164\|Ga0066815_10103452	Not Available	537	Open in IMG/M
3300005168\|Ga0066809_10155127	Not Available	596	Open in IMG/M
3300005169\|Ga0066810_10037304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	898	Open in IMG/M
3300005185\|Ga0066811_1009277	Not Available	702	Open in IMG/M
3300005340\|Ga0070689_101669009	Not Available	579	Open in IMG/M
3300005440\|Ga0070705_100915751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	706	Open in IMG/M
3300005536\|Ga0070697_100244504	Not Available	1533	Open in IMG/M
3300005614\|Ga0068856_101639766	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Terrimonas → Terrimonas ferruginea	656	Open in IMG/M
3300005719\|Ga0068861_100615432	Not Available	999	Open in IMG/M
3300005719\|Ga0068861_102615607	Not Available	509	Open in IMG/M
3300006059\|Ga0075017_101212182	Not Available	591	Open in IMG/M
3300006163\|Ga0070715_10194259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1027	Open in IMG/M
3300006172\|Ga0075018_10161981	Not Available	1039	Open in IMG/M
3300006196\|Ga0075422_10525385	Not Available	540	Open in IMG/M
3300006852\|Ga0075433_10334026	Not Available	1340	Open in IMG/M
3300006854\|Ga0075425_101291993	Not Available	827	Open in IMG/M
3300006871\|Ga0075434_100268861	Not Available	1724	Open in IMG/M
3300006904\|Ga0075424_102845252	Not Available	503	Open in IMG/M
3300006914\|Ga0075436_101069716	Not Available	607	Open in IMG/M
3300007076\|Ga0075435_101288424	Not Available	640	Open in IMG/M
3300009091\|Ga0102851_12723026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	567	Open in IMG/M
3300009100\|Ga0075418_11067734	Not Available	874	Open in IMG/M
3300009156\|Ga0111538_10443976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1644	Open in IMG/M
3300009157\|Ga0105092_10384884	Not Available	797	Open in IMG/M
3300009162\|Ga0075423_11221827	Not Available	802	Open in IMG/M
3300009168\|Ga0105104_10345242	Not Available	823	Open in IMG/M
3300009553\|Ga0105249_10837562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	985	Open in IMG/M
3300010043\|Ga0126380_10021869	All Organisms → cellular organisms → Bacteria → Proteobacteria	3087	Open in IMG/M
3300010154\|Ga0127503_10821081	Not Available	530	Open in IMG/M
3300010362\|Ga0126377_10043968	Not Available	3859	Open in IMG/M
3300010396\|Ga0134126_12157176	Not Available	608	Open in IMG/M
3300010397\|Ga0134124_11668552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	669	Open in IMG/M
3300010399\|Ga0134127_10864640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	957	Open in IMG/M
3300012494\|Ga0157341_1014775	Not Available	712	Open in IMG/M
3300012503\|Ga0157313_1017629	Not Available	694	Open in IMG/M
3300012510\|Ga0157316_1071661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	524	Open in IMG/M
3300012897\|Ga0157285_10243422	Not Available	587	Open in IMG/M
3300012948\|Ga0126375_10007381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4381	Open in IMG/M
3300012951\|Ga0164300_10005638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3589	Open in IMG/M
3300012955\|Ga0164298_10537371	Not Available	789	Open in IMG/M
3300012955\|Ga0164298_11582509	Not Available	515	Open in IMG/M
3300012957\|Ga0164303_10006609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3771	Open in IMG/M
3300012957\|Ga0164303_10916637	Not Available	615	Open in IMG/M
3300012958\|Ga0164299_10006536	Not Available	4035	Open in IMG/M
3300012958\|Ga0164299_10619720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	743	Open in IMG/M
3300012960\|Ga0164301_10368572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	994	Open in IMG/M
3300012984\|Ga0164309_10037351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2723	Open in IMG/M
3300012985\|Ga0164308_11478441	Not Available	623	Open in IMG/M
3300012986\|Ga0164304_10694923	Not Available	772	Open in IMG/M
3300012987\|Ga0164307_10569355	Not Available	868	Open in IMG/M
3300012987\|Ga0164307_11389416	Not Available	591	Open in IMG/M
3300013296\|Ga0157374_11004403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	854	Open in IMG/M
3300013306\|Ga0163162_13261356	Not Available	520	Open in IMG/M
3300015077\|Ga0173483_10280174	Not Available	807	Open in IMG/M
3300015371\|Ga0132258_10526176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2960	Open in IMG/M
3300017792\|Ga0163161_10873523	Not Available	760	Open in IMG/M
3300017974\|Ga0187777_10808795	Not Available	670	Open in IMG/M
3300018028\|Ga0184608_10013435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2844	Open in IMG/M
3300018052\|Ga0184638_1313710	Not Available	529	Open in IMG/M
3300018054\|Ga0184621_10015831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2249	Open in IMG/M
3300018072\|Ga0184635_10258945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	688	Open in IMG/M
3300018076\|Ga0184609_10286490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	771	Open in IMG/M
3300018081\|Ga0184625_10035492	All Organisms → cellular organisms → Bacteria → Proteobacteria	2459	Open in IMG/M
3300019361\|Ga0173482_10106520	Not Available	1027	Open in IMG/M
3300022756\|Ga0222622_10631351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	775	Open in IMG/M
3300025934\|Ga0207686_10902814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	713	Open in IMG/M
3300025961\|Ga0207712_11400297	Not Available	626	Open in IMG/M
3300026118\|Ga0207675_101186091	Not Available	784	Open in IMG/M
3300027378\|Ga0209981_1044164	Not Available	669	Open in IMG/M
3300027526\|Ga0209968_1079468	Not Available	589	Open in IMG/M
3300027543\|Ga0209999_1036539	Not Available	917	Open in IMG/M
3300027617\|Ga0210002_1042477	Not Available	774	Open in IMG/M
3300027703\|Ga0207862_1081765	Not Available	972	Open in IMG/M
3300027717\|Ga0209998_10002902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3841	Open in IMG/M
3300027876\|Ga0209974_10160837	Not Available	814	Open in IMG/M
3300028589\|Ga0247818_10210665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1278	Open in IMG/M
3300028796\|Ga0307287_10183411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	795	Open in IMG/M
3300031093\|Ga0308197_10328163	Not Available	574	Open in IMG/M
3300031094\|Ga0308199_1068027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	731	Open in IMG/M
3300031114\|Ga0308187_10267882	Not Available	628	Open in IMG/M
3300031170\|Ga0307498_10015150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1646	Open in IMG/M
3300031184\|Ga0307499_10084115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	845	Open in IMG/M
3300031226\|Ga0307497_10066893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1312	Open in IMG/M
3300031226\|Ga0307497_10481877	Not Available	609	Open in IMG/M
3300031231\|Ga0170824_108006127	Not Available	597	Open in IMG/M
3300031231\|Ga0170824_116932356	Not Available	510	Open in IMG/M
3300031474\|Ga0170818_111508438	Not Available	564	Open in IMG/M
3300031740\|Ga0307468_100599074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	899	Open in IMG/M
3300031740\|Ga0307468_101751116	All Organisms → cellular organisms → Bacteria → Proteobacteria	586	Open in IMG/M
3300031943\|Ga0310885_10100817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1310	Open in IMG/M
3300032017\|Ga0310899_10385249	Not Available	669	Open in IMG/M
3300032075\|Ga0310890_10782685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	754	Open in IMG/M
3300032122\|Ga0310895_10241328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	831	Open in IMG/M
3300032174\|Ga0307470_11858393	Not Available	511	Open in IMG/M
3300032180\|Ga0307471_100964448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1020	Open in IMG/M
3300032180\|Ga0307471_102582843	Not Available	643	Open in IMG/M
3300033513\|Ga0316628_103932359	Not Available	532	Open in IMG/M
3300033551\|Ga0247830_10510688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	946	Open in IMG/M
3300034667\|Ga0314792_192189	All Organisms → cellular organisms → Bacteria → Proteobacteria	569	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.81%
Host-Associated	Host-Associated	30.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.55%
Plants	Host-Associated → Plants	30.19%
Aquatic	Environmental → Aquatic	12.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.21%
Sediment	Environmental → Aquatic → Sediment	8.49%
Freshwater	Environmental → Aquatic → Freshwater	3.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.49%
Loam	Environmental → Terrestrial → Soil → Loam	4.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.94%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.49%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.55%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.64%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.60%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	6.60%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.89%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.94%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2189573004	Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)	Environmental	Open in IMG/M
3300000043	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere	Host-Associated	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300003349	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005185	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012494	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.yng.030610	Host-Associated	Open in IMG/M
3300012503	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_R	Host-Associated	Open in IMG/M
3300012510	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.9.old.080610	Host-Associated	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027378	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027526	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027543	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034667	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02508480	2088090014	Soil	MLCDGLTILRATVQMTVEGDEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILVEVDQPEPEILTLT
FG2_01416190	2189573004	Grass Soil	MIENGEPAEVSASSTAAPSCYRVTVLSGSLEISARLKDADDLELLMRVLQANKALFTKADKLEPEILAKTDRPATKLSTSQSETQALVKADRPKAKTKANGSARKFLTAVDQSDPE
ARcpr5yngRDRAFT_0119631	3300000043	Arabidopsis Rhizosphere	MIENGEPAEVSASSTAAPSCYRVSVLSGSLEISARLKDADDLELLMRVLEANKALFTKADKLEPEILARTDRPATKLSTSQSETQALAKADRPKAKTKANGSARK
JGI11615J12901_102590711	3300000953	Soil	MLCDGLTILRATVQMTVEGDEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEPEILTLT*
JGI26129J50193_10161261	3300003349	Arabidopsis Thaliana Rhizosphere	MLCDGLTILRATVQMTVEGDEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAK
Ga0062591_1013819321	3300004643	Soil	MLCDGLTILRATVQMTVEGDEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVAR
Ga0066814_100340561	3300005162	Soil	MIENGELVAMVAASSTAAPSCYRVSLLSGSLEVSARLKSADDLELLMRVLEANKVLFNKAEGSKPAILARTDRPATKLSTSQSETQALTKEDRPKAKGSTKANESAPKVLADRSEDEILTLT*
Ga0066815_101034521	3300005164	Soil	MIENGEPVAMVAASSTAAPSCYRVSLLSGSLEVSARLKSADDLELLMRVLEANKVLFNKAEGLEPAILARTDRPATKLSTSQSETQALAKADRAKAKGSTKANGSASNGLADADRSEDEILTLT*
Ga0066809_101551271	3300005168	Soil	MIENGELVAMVAASSTAAPSCYRVSLLSGSLEVSARLKSADDLELLMRVLEANKVLFTKADRLEAEILAKIDRPATKLSTSQSETQALTKEDRPKAKGSTKANESAPKVLADRSEDEILTLT*
Ga0066810_100373041	3300005169	Soil	MIENGELVAMVAASSTAAPSCYRVSLLSGSLEVSARLKSADDLELLMRVLEANKVLFNKAEGLEPAILARTDRPATKLSTSQSETQALTKEDRPKAKGSTKANGSAPKVLADRSEDEILTLT*
Ga0066811_10092771	3300005185	Soil	MIENGELVAMVAASSTAAPSCYRVSLLSGSLEVSARLKSADDLELLMRVLEANKVLFNKAEGLEPAILARTDRPATKLSTSQSETQALTKEDRPKAKGSTKANESAPKVLADRSEDEILTLT*
Ga0070689_1016690091	3300005340	Switchgrass Rhizosphere	HALQYKGQSEWAAKGGEMIENGEPAEISASSTAAPSCYRVSVLSGSLEISARLKDADDLELLIRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTLT
Ga0070705_1009157511	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	KGGEMIENGEPAEISASSTAAPSCYRVSVLSGSLEISARLKDADDLELLIRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTLT*
Ga0070697_1002445043	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MIENGDPAAMVAASSIAAPSCYRVSVLSGSLEISARLKSADDLELLMRVLEANKVLFTKADRLEPEILAKTDRPATKLSTSQSETQALVKADRPKAKTSAKANGSAPKVLAEVDQSEPEILTLT*
Ga0068856_1016397661	3300005614	Corn Rhizosphere	MIENGEPAEISASSTAAPSCYRVSVLSGSLEISARLKDADDLELLIRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTLT*
Ga0068861_1006154323	3300005719	Switchgrass Rhizosphere	MIENRVPTGTVVESSTAAPSCYRVSVLSGSLEISARLKSADDLELLMKVLEANKALFTKADKLEPEISAKADRLATKSTGQSETQSLVKGNRPKAKTKANGSARTFLTELDQSEPEILTLT*
Ga0068861_1026156071	3300005719	Switchgrass Rhizosphere	MIENGEPAEVSASSTAAPSCYRVSVLSGSLEVSARLKNADDLELLIRVLEANNALFTEADKLEPEILAKTDRPAINVFTSQSERKASEKADRPKAKTKANGSARKFLTVDRSEDEILTLT
Ga0075017_1012121821	3300006059	Watersheds	MDLSKRVLSYFVNHTLPRSHSLRATVQMAVEGEMIENVEPATMVAASSTATVGTAAPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKVLFADRFNPEISAKTDRPSTEFSRNLSDTSVVVKADRLTTKPSAKANGSARKVLAEVDRSEPEILTLT*
Ga0070715_101942592	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MIENGEPVSMVAASSTATPSCYRVSLLSGSLEVSARLKNADDLELLMRVPEANKVLFAKADKLEPEILAKTDRPATKLSTSQSETQALEKADRPKAKTKANGSARKFLTEVDRSEDEILTLT*
Ga0075018_101619813	3300006172	Watersheds	CYRVSVLSGSLEVSARLKSAHDLELLMRVLEANKVLFTKERLEPENSAKMNRPATEVSTGQSAKVKANRPTTKTSAKANGSEVDRSEPEILTLT*
Ga0075422_105253852	3300006196	Populus Rhizosphere	VGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEPEILTLT*
Ga0075433_103340262	3300006852	Populus Rhizosphere	MLCDGLTILRATVQMTVEGDEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEPEILVASAPAGALCFN*
Ga0075425_1012919931	3300006854	Populus Rhizosphere	VGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEPEIL
Ga0075434_1002688614	3300006871	Populus Rhizosphere	EMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEPEILVASAPAGALFV*
Ga0075424_1028452521	3300006904	Populus Rhizosphere	MLCDGLTISRATVQMTVEGDEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPE
Ga0075436_1010697161	3300006914	Populus Rhizosphere	MLCDGLTILRATVQMTVEGDEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEPEILVASAPAGALFV*
Ga0075435_1012884242	3300007076	Populus Rhizosphere	TVEGDEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEPEILTLT*
Ga0102851_127230261	3300009091	Freshwater Wetlands	SLLSGSLEVSARLKSAEDLELLVRVLEANKALFTKADKLEPQILADADRPATKLSTSQSETQALMKADRPKAKTKANGSARKFLTEVDRSEDEILTLT*
Ga0075418_110677341	3300009100	Populus Rhizosphere	MFCDGLTILRATVQMTVEGDQMNENEETASSRATGIAVPSCYRVSVLSGSLEVSARLKDADDLELLMRVLEANKALFAKADRLEPEAKTDRPAMKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEPEILTLT*
Ga0111538_104439762	3300009156	Populus Rhizosphere	MIENGEPAEVSASSTAAPSCYRVSVLSGSLEISARLKDADDLELLIRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTLT*
Ga0105092_103848841	3300009157	Freshwater Sediment	AAPSCYRVSVLSGSLEISARLKSADDLELLMRVLEANKVLFTKADRLEPEILAKTDRPAIKLSTGQSDRQALVKADRPKAKTSAKANGSAPKVLAEVDQSEPEILTLT*
Ga0075423_112218271	3300009162	Populus Rhizosphere	MLCDGLTILRATVQMTVEGDEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLNKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEPEILVASAPAGAL
Ga0105104_103452422	3300009168	Freshwater Sediment	VSSIEFYRFERMARASVAVLSGSLEISARLKSADDLELLMRVLEANKVLFTKADRLEPEILAKTDRPAIKLSTSQSERQALVKADRPKAKTSAKANGSAPKVLAEVDQSEPEILTLT*
Ga0105249_108375622	3300009553	Switchgrass Rhizosphere	MIETESCYRVSVLSGSLEISARLKSADDLELLVRVLEANKALFTKADKLKPQILADADRPATKLSTSQSETQALMKADRPKAKTKANGSARKCLTEVDRAEDEILTLT*
Ga0126380_100218697	3300010043	Tropical Forest Soil	MIENGEPAATVAASSTAPSCYRVSLLSGSLEVSARLKSADDLDLFVRVLEANKALFTKAEKLESQILADADQPAVKADRPKAKTKTNGSARKFLTEVDQSEQEILTLT*
Ga0127503_108210811	3300010154	Soil	MLCHGLTFSKSSVLVEGDEMIETESCYRVSVLSGSLEISARLKSADDLELLVRVLEANKALFTKADKLEPQILADADRPATKLSTTQSETQALVKAAHPRQKRRRTDQRVSF*
Ga0126377_100439683	3300010362	Tropical Forest Soil	MIENGEPAATVAASSTAPSCYRVSLLSGSLEVSARLKSADDLDLFVRVLEANKALFTKADKLESQILADTDQPAVKADRPKAKTRTNGSARKFLTEVDQSEQEILTLT*
Ga0134126_121571761	3300010396	Terrestrial Soil	MIENGEPAEISASSTAAPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADKSTSHSETQALEKADRPKAKTKANGSARKFLTEVDRSEDEILTLT
Ga0134124_116685521	3300010397	Terrestrial Soil	MIENGEPAEISASYTAAPSCYRVSVLSGSLEISARLKDADDLELLIRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTLT*
Ga0134127_108646401	3300010399	Terrestrial Soil	MIENGEPAEISASSTAAPSCYRVSVLSGSLEISARLKDADDLELLIRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEI
Ga0157341_10147751	3300012494	Arabidopsis Rhizosphere	MIENGEPAEVSASSTAAPSCYRVSVISGSLEISARLKDADDLELLMRVLEANKALFTKADKLEPEILARTDRPATKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTLT*
Ga0157313_10176291	3300012503	Arabidopsis Rhizosphere	MIENGEPAEVSASSTAAPSCYRVSVLSGSLEISARLKDADDLELLMRVLEANKALFTKADKLEPEILARTDRPATKLSTSQSETQALAKADRPKAKTKANGSARKFLTEV
Ga0157316_10716612	3300012510	Arabidopsis Rhizosphere	STAAPSCYRVSVLSGSLEISARLKDADDLELLMRVLEANKALFTKADKLEPEILARTDRPATKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTLT*
Ga0157285_102434222	3300012897	Soil	MFCDGLTILRATVQMTVEGDEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAK
Ga0126375_100073813	3300012948	Tropical Forest Soil	MIENGEPAATVAASSTAPSCYRVSLLSGSLEVSARLKSADDLDLFVRVLEANKALFTKAEKLESQILADADHPAVKADRPKAKTKTNGSARKFLTEVDQSEQEILTLT*
Ga0164300_100056383	3300012951	Soil	MIENGEPVSMVAASSTATPSCYRVSLLSGSLEVSARLKNADDLELLMRVLEANKALFAKADKSTSHSETQALEKADRPKAKTKANGSARKFLTEVDRSEDEILTLT*
Ga0164298_105373712	3300012955	Soil	MIETESCYRVSVLSGSLEISARLKSADDLELLVRVLEANKALFSKADKLEPQILMDADRPATKLSTTQSETQALLKADRSKAKTKVNGSARKFLTEVDQSDPEILTLT*
Ga0164298_115825091	3300012955	Soil	MIENGEPVSMVAASSTATPSCYRVSLLSGSLEVSARLKNADDLELLMRVLEANKALFAKADKSTSHSETQALEKADRPKAKTKANGSARKFLTEVD
Ga0164303_100066095	3300012957	Soil	MIENGEPAEISASYTAAPSCYRVSVLSGSLEISARLKDADDLELLIRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKAERPKAKTKANGSARKFLTEVDRSEDEILTLT*
Ga0164303_109166371	3300012957	Soil	MIENGEPVAMVAASSTATPSCYRVSLLSGSLEVSARLKNADDLELLMRVLEANKALFAKADKLEPEILAKTDRPATKLSTSQSETQALEKADRPKAKTKANGSARKFLTEVDQSDPEILTLT*
Ga0164299_100065366	3300012958	Soil	MIENGEPAEISASYTAAPSCYRVSVLSGSLEISARLKDADDLELLMRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTLT*
Ga0164299_106197201	3300012958	Soil	MIENGEPVAMVAASSTATPSCYRVSLLSGSLEVSARLKNADDLELLMRVLEANKALFAKADKSTSHSETQALEKADRPKAKTKANGSARKFLTEVDRSEDEILTLT*
Ga0164301_103685722	3300012960	Soil	MIENGEPVAVAASSTAAPSCYRVSVLSGSLEMSARLKSADDLELLMRVLEANKVLFTKADKLESEILAKTDRPAIKLSTSQSESQALAKADRPKAKTSAKANGSAPKVLAEVDRSEDEILTLT*
Ga0164309_100373514	3300012984	Soil	MIENGEPAEISASSTAAPSCYRVSVLSGSLEISARLKDADDLELLMRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTLT*
Ga0164308_114784411	3300012985	Soil	MIETESCYRVSVLSGSLEISARLKSADDLELLVRVLEANKALFIKADKLEPQILADADRPATKLSTTQSETQALVKADRPKAKMKANGSARKFLTEVDQSDPEILTLT*
Ga0164304_106949231	3300012986	Soil	MVAASSTSTPSGYRVSLLSGSLEVSARLKNADDLELLMRVLEANKALFARADKLEPEILAKTDRPATKLSTSQSETQALEKADRPKAKTKANGSARKFLTEVDQSDPEILTLT*
Ga0164307_105693551	3300012987	Soil	MIENGEPVAMVAVSCTAAPSCYRVSLLSGSLEVSARLKSADDLELLVRVLEANKALFTKADKLKPQILADADRPATKLSTTQSETQALLKADRPKAKTKANGSARKFLTEVDQSDPEILTLT*
Ga0164307_113894161	3300012987	Soil	MIENGEPAAMVAASSTAAPSCYRVSLLSGSLEVSARVKSADDLDLLMRVLEANKALFTKADNLEPQILADADRPAPKLSTTQSETQALVKADRPKAKTKANGSARKFLTEVDRPEEEILTLT*
Ga0157374_110044031	3300013296	Miscanthus Rhizosphere	MIENGEPVAMVAASSTAAPSCYRVSVLSGSLEISARLKDADDLELLIRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTLT*
Ga0163162_132613561	3300013306	Switchgrass Rhizosphere	MIENGEPAEVSASSTAAPSCYRVSVLSGSLEISARLKNADDLELLMRVLQANKALFTKANKLEPEILAKTDRPATKLSTSQSETQALEKADRPKAKTKANGSARKFLT
Ga0173483_102801742	3300015077	Soil	DEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKTDRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEPEILTLT*
Ga0132258_105261762	3300015371	Arabidopsis Rhizosphere	MIENGELVAMVAASSTAAPSCYRVSLFSGSLEVSARLKSADDLELLMRVLEANKVLFNKAEGLEPAILASTDRPATKLSTSQSGTQALTKEDRPKAKGSTKANGSAPKLLADRSEDEILTLT*
Ga0163161_108735232	3300017792	Switchgrass Rhizosphere	MLETESSYRVSVLSGSLEISARLKSADDLELLVEPQILADADRPATKLSTTQSETQALVNSDRPKAKTKANGSARKFLTEVDQSAPEILTLT
Ga0187777_108087951	3300017974	Tropical Peatland	MIETATVETAAPSCYRVSVLSGSLEVSARLKSAHDLELLMRVLEANKVLFTKANRLEPENSAKMDRLATEASARQSAEVKVTPPTTKTSVKANGSAHKPLAEVEQSESEILTLT
Ga0184608_100134354	3300018028	Groundwater Sediment	MIENGEPAEVSASSTAASSCYRVSVLSGSLEISARLKNADDLELLMRVLQANKALFTKADKLEPEILAKTDRPAIKLSTSQSETQALAKADRPKAKTKPNGSARKFLTEVDRSEDEILTL
Ga0184638_13137101	3300018052	Groundwater Sediment	MIENGELVAMVAASSTAAPSCYRVSLLSGSLEVSARLKSADDLELLMRVLEANKVLFNKAEGLEPAILARTDRPATKLSTSQSETQALTKEDRPKAKGSTKANGSAPKVLADRSEDEILTLT
Ga0184621_100158311	3300018054	Groundwater Sediment	MIENGEPAEVSASSTAASSCYRVSVLSGSLEISARLKNADDLELLMRVLQANKALFTKADKLEPEILAKTDRPATKLSTSQSETQALAKADRPKAKTKPNGSARKFLTEVDRSEDEILTL
Ga0184635_102589451	3300018072	Groundwater Sediment	AASSTAAPSCYRVSLLSGSLEVSARLKSADDLELLMRVLEANKVLFNKAEGLEPAILARTDRPATKLSTSQSETQALTKEDRPKAKGSTKANGSAPKVLADRSEDEILTLT
Ga0184609_102864902	3300018076	Groundwater Sediment	EGDEMIETESCYRVSVLSGSLEISARLKSADDLELLVRVLEANKALFTKADKLEPEILAKTDRPATKLSTSQSETQALAKADLPKAKTKPNGSARKFLTEVDRSEDEILTLT
Ga0184625_100354924	3300018081	Groundwater Sediment	MIENGELVAMVAASSTAAPSCYRVSLLSGSLEVSARLKSADDLELLMRVLEANKVLFNKAEGLEPAILARTDRPATKLSTSQSATQGLTKEDRPKAKGSTKANGSAPKVLADRSEDEILTLT
Ga0173482_101065202	3300019361	Soil	MIETESCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEPEILVASAPAGALCFN
Ga0222622_106313511	3300022756	Groundwater Sediment	MIENGEPAEVSASSTAASSCYRVSVLSGSLEISARLKNAGDLELLMRVLQANKALFTKADKLEPEILAKTDRPATKLSTSQSETQALAKADRPKAKTKPNGSARKFLTEVDRSEDEILTL
Ga0207686_109028142	3300025934	Miscanthus Rhizosphere	MIENGEPAEISASSTAAPSCYRVSVLSGSLEISARLKDADDLELLIRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTL
Ga0207712_114002971	3300025961	Switchgrass Rhizosphere	MIENGEPVAMVAASSTAAPSCYRVSLLSGSLEVSARLKSADDLELLMRVLEANKVLFTKADRLEPEILAKTDRPATKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEIL
Ga0207675_1011860911	3300026118	Switchgrass Rhizosphere	MIENGEPVAMVAASSTAAPSCYRVSLLSGSLEVSARLKSADDLELLMRVLEANKVLFTKADKLEPQILADADRPATKLSTSQSETQALMKADRPKAKTKANGSARKFLTEVDRAEDEILTLT
Ga0209981_10441641	3300027378	Arabidopsis Thaliana Rhizosphere	CSECSYILLTMLCDGLTILRATVQMTVEGDEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALCAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEPEILTLT
Ga0209968_10794682	3300027526	Arabidopsis Thaliana Rhizosphere	MLCDGLTILRATVQMTVEGDEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEPEILVASAPAGAL
Ga0209999_10365392	3300027543	Arabidopsis Thaliana Rhizosphere	MLCDGLTILRATVQMTVEGDEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEPEILVASAPAGALFV
Ga0210002_10424772	3300027617	Arabidopsis Thaliana Rhizosphere	MLCDGLTILRATVQMTVEGDEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEPEILVASAPAGALCFN
Ga0207862_10817651	3300027703	Tropical Forest Soil	MVENGEPAGSVTAPSTATMGAVAPSCYRISVLSGSLEVSARLKNADDLQLLMRVLEANKVLFTKAGRSEPEVSAKADRATKSSAKAVQLEAEALVKAHRPTTKTSAKANRSEPEVLAKADSLEPEVLTLT
Ga0209998_100029023	3300027717	Arabidopsis Thaliana Rhizosphere	MTVEGDEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEPEILVASAPAGALFV
Ga0209974_101608371	3300027876	Arabidopsis Thaliana Rhizosphere	MLCDGLTILRATVQMTVEGDEMDENEETASSRATVGIAVPSCYRVSVLSGSLEVSARLKNADDLELLMRVLEANKALFAKADRLEPEAKTDRPAIKLSTAQSETHVVARAGRPKTKTSAKANGSLSKILAEVDQPEP
Ga0247818_102106652	3300028589	Soil	MIENGELVAMVAASSTAAPSCYRVSLLSGSLEVSARLKSADDLELLMRVLEANKVLFNKSEGLEPAILARTDRPATKLSTSQSETQALTKEDRPKAKGSTKANGSAPKVLADRSEDEILTLT
Ga0307287_101834113	3300028796	Soil	MIENGEPAEVSASSTAASSCYRVSVLSGSLEISARLKNADDLELLMRVLQANKALFTKADKLEPEILAKTDRPATKLSTSQSETQALAKADRPKAKTKPNGSARKFLTEVDRL
Ga0308197_103281631	3300031093	Soil	KGDEMIENGEPAEVSASSTAASSCYRVSVLSGSLEISARLKNADDLELLMRVLQANKALFTKADKVEPEILAKTDRPATKLSTSQSETQALAKADRPKAKTKPNGSARKFLTEVDRSEDEILTLT
Ga0308199_10680271	3300031094	Soil	MIEIGEPAEVSASSTAASSCYRVSVLSGSLEISARLKDADDLELLMRVLQANKALFTKTDKVEPEILAKTDRPATKLSTSQSETQALAKADRPKAKTKPNGSALKFLTEVDRSEDEILTL
Ga0308187_102678821	3300031114	Soil	MIENGEPAEVSASSTAASSCYRVSVLSGSLEISARLKNADDLELLMRVLQANKALFTKADKVEPEILAKTDRPATKLSTSQSETQALAKADRPKAKTKPNGSARKFLTEVDRSEDEILTL
Ga0307498_100151501	3300031170	Soil	MIENGEPAEISASSTAAPSCYRVSVLSGSLEISARLKDADDLELLMRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTL
Ga0307499_100841152	3300031184	Soil	MIENGEPAEISASSTAAPSCYRVSVLSGSLEISARLKDADDLELLMRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGS
Ga0307497_100668932	3300031226	Soil	FVTLYNIERGSPNGRSKGDEMIENGEPAEISASSTAAPSCYRVSVLSGSLEISARLKDADDLELLMRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTLT
Ga0307497_104818771	3300031226	Soil	VQLTVEGDEMIETESCYRVSVLSGSLEVSARLKSADDLELLVRVLEANKALFTKADKLEPQILADADRPATELSTTQSETQALVKADRPKAKMKANGSARKFLTEVDQSDPEILTLT
Ga0170824_1080061271	3300031231	Forest Soil	MIENGEPVAMVAASSTAAPSCYRVSLFSGSLEVSARLKNADDLELLMRVLEANKALFAKADKLEPQILADADRPKLSTTQSETQALLKADRPTKAN
Ga0170824_1169323561	3300031231	Forest Soil	SEWAVEGDEMIENGKPVELCASSTAAPSCYRVSVVSGSLEISARLKSVDDLELLVRVLEANKALFTKADKLEPQILADADRPATELSTTQSETQALVKADRPKAKMKANGSARKFLTEVDQSDPEILTLT
Ga0170818_1115084381	3300031474	Forest Soil	TFSKSSVLVDGDEMIETESCYRVSVLSGSLEISARLKSADDLELLVRVLEANKALFTKADKLEPQILADADRPATELSTTQSETQALVKADRPKAKMKANGSARKFLTEVDQSDPEILTL
Ga0307468_1005990741	3300031740	Hardwood Forest Soil	RVSLLSGSLEVSARLKSADDLELLMRVLEANKVLFTKGDKLEPEVLAKADRPATKLSTSQSETQELAKTDRPKAKSSTKANGSASKFLTEADRSEDEILTLT
Ga0307468_1017511161	3300031740	Hardwood Forest Soil	MIENGEPAEVSASSTAAPSCYRVSVLSGSLEVSARLKNADDLELLIRVLEANNALFTEADKLEPEILAKTDRPAINVFTSQSERKASEKADRPKAKTKANGSARNVLTEVDRSEDEILTL
Ga0310885_101008172	3300031943	Soil	MIENGEPAEISASYTAAPSCYRVSVLSGSLEISARLKDADDLELLIRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTL
Ga0310899_103852491	3300032017	Soil	MIENGEPAEVSASSTAAPSCYRVSVLSGSLEISARLKDADDLELLIRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTL
Ga0310890_107826852	3300032075	Soil	MIENGELVAMVAASSTAAPSCYRVSLFSGSLEVSARLKSADDLELLMRVLEANKVLFNKAEGLEPAILASTDRPATKLSTSQSETQALTKEDRPKAKGSTKANGSAPKVLADRSEDEILTLT
Ga0310895_102413281	3300032122	Soil	MIENGEPAEISASSTAAPSCYRVSVLSGSLEISARLKDADDLELLIRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRPKAKTKANGSARKFLTEVDRAEDEIL
Ga0307470_118583931	3300032174	Hardwood Forest Soil	MIENGEPAEVSASSTAAPSCYRVSVLSGSLEVSARLKNADDLELLIRVLEANNALFTEADKLEPEILAKTDRPAINVFTSQSERKASEKADRPKAKTKANGSARKVLTEVDRSEDEILTL
Ga0307471_1009644482	3300032180	Hardwood Forest Soil	MIENGEPAEVSASSTAASSCYRVSVLSGSLEISARLKNADDLELLMRVLQANKALFTKANKLEPEILAKTDRPATKLSTSQSETQALEKADRPKAKTKANGSARKFLTEVDRSEDEILTL
Ga0307471_1025828431	3300032180	Hardwood Forest Soil	MIENGEPVAVAASSTAAPSCYRVSVLSGSLEMSARLKSADDLELLMRVLEANKVLFTKADKLESEILAKTDRPAIKLSTSQSESQALAKADRPKAKTSAKANGSAPK
Ga0316628_1039323591	3300033513	Soil	LYNIEGDSPNGRSKGDELIENGEPAEVSASSTAAPSCYRVTVLSGSLEISARLKDADDLELLMRVLQANKALFTKAGKLEHEILAKTDRSATKLSTSQSETQSLVKADRPKAKTKANGSARKFLTEVDQSAPEILTLT
Ga0247830_105106882	3300033551	Soil	MIENGEPAEVSASSTAAPSCYRVSVLSGSLEISARLKDADDLELLMRVLQANKALFTKADKLEPEILVKTDRPATKLSKSQSETQALAKADRPKAKTKANGSARKFLTEVDRSEDEILTL
Ga0314792_192189_176_541	3300034667	Soil	MIENGEPAEVSASSTAAPSCYRVSVLSGSLEISARLKDADDLELLIRVLQANKALFTKADKLEPEILAKTDRPAPKLSTSQSETQALAKADRHKAKTKANGSARKFLTEVDRSEDEILTL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094478

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences