Metagenome / Metatranscriptome Family F094474

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094474
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	52 residues
Representative Sequence	MLIGLGCVIGLTAVIAIARALRARSTLNENRMMRDYLRRIASDRNPDF
Number of Associated Samples	88
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	20.75 %
% of genes near scaffold ends (potentially truncated)	55.66 %
% of genes from short scaffolds (< 2000 bps)	81.13 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.094 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (19.811 % of family members)
Environment Ontology (ENVO)	Unclassified (27.358 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.679 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.26% β-sheet: 0.00% Coil/Unstructured: 44.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF07077	DUF1345	2.83
PF03551	PadR	1.89
PF13610	DDE_Tnp_IS240	1.89
PF00440	TetR_N	1.89
PF07992	Pyr_redox_2	1.89
PF03886	ABC_trans_aux	1.89
PF13360	PQQ_2	1.89
PF00857	Isochorismatase	1.89
PF07676	PD40	0.94
PF13495	Phage_int_SAM_4	0.94
PF00691	OmpA	0.94
PF00437	T2SSE	0.94
PF02518	HATPase_c	0.94
PF00069	Pkinase	0.94
PF02687	FtsX	0.94
PF00487	FA_desaturase	0.94
PF01548	DEDD_Tnp_IS110	0.94
PF01266	DAO	0.94
PF10056	DUF2293	0.94
PF00216	Bac_DNA_binding	0.94
PF14759	Reductase_C	0.94
PF13905	Thioredoxin_8	0.94
PF10011	DUF2254	0.94
PF01135	PCMT	0.94
PF01554	MatE	0.94
PF13517	FG-GAP_3	0.94
PF01694	Rhomboid	0.94
PF14559	TPR_19	0.94
PF11154	DUF2934	0.94
PF13701	DDE_Tnp_1_4	0.94
PF00027	cNMP_binding	0.94
PF13545	HTH_Crp_2	0.94
PF01738	DLH	0.94
PF04879	Molybdop_Fe4S4	0.94
PF13432	TPR_16	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.77
COG4291	Uncharacterized membrane protein	Function unknown [S]	2.83
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	1.89
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.89
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.89
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.89
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.89
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.94
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.94
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.94
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.94
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.94
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.94
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.09 %
Unclassified	root	N/A	34.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.09 %
Unclassified	root	N/A	34.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.09 %
Unclassified	root	N/A	34.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	39.62 %
Unclassified	root	N/A	34.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	21.70 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	9.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.81 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.66 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	3.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.94 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.94 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.81 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.66 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.94 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.94 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.94 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.94 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.81 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	2.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.94 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.94 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.94 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.94 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.94 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.81 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	2.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.94 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.94 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.94 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.94 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.94 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.81 %
Granulicella sp. dw_53	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. dw_53	2.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	0.94 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.94 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.94 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.94 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.94 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005180\|Ga0066685_10720368	Not Available	683	Open in IMG/M
3300005181\|Ga0066678_11011548	Not Available	538	Open in IMG/M
3300005332\|Ga0066388_100587062	Not Available	1739	Open in IMG/M
3300005445\|Ga0070708_100036400	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4293	Open in IMG/M
3300005450\|Ga0066682_10376140	Not Available	913	Open in IMG/M
3300005451\|Ga0066681_10605909	Not Available	674	Open in IMG/M
3300005468\|Ga0070707_101094645	Not Available	763	Open in IMG/M
3300005468\|Ga0070707_101178894	Not Available	732	Open in IMG/M
3300005518\|Ga0070699_101319645	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300005518\|Ga0070699_101840704	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300005530\|Ga0070679_101715939	Not Available	576	Open in IMG/M
3300005536\|Ga0070697_101552125	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. dw_53	592	Open in IMG/M
3300005538\|Ga0070731_10018127	All Organisms → cellular organisms → Bacteria	4938	Open in IMG/M
3300005542\|Ga0070732_10153138	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
3300005545\|Ga0070695_100084319	All Organisms → cellular organisms → Bacteria	2108	Open in IMG/M
3300005764\|Ga0066903_100664037	All Organisms → cellular organisms → Bacteria	1827	Open in IMG/M
3300006047\|Ga0075024_100652126	Not Available	572	Open in IMG/M
3300006163\|Ga0070715_10220793	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	974	Open in IMG/M
3300006173\|Ga0070716_100875933	Not Available	701	Open in IMG/M
3300006358\|Ga0068871_102371207	Not Available	506	Open in IMG/M
3300006796\|Ga0066665_10444908	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1070	Open in IMG/M
3300006854\|Ga0075425_102094074	Not Available	632	Open in IMG/M
3300006854\|Ga0075425_103016409	Not Available	515	Open in IMG/M
3300006864\|Ga0066797_1097384	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300009012\|Ga0066710_102949457	Not Available	665	Open in IMG/M
3300009038\|Ga0099829_10097452	All Organisms → cellular organisms → Bacteria	2282	Open in IMG/M
3300009038\|Ga0099829_10451601	All Organisms → cellular organisms → Bacteria	1065	Open in IMG/M
3300009038\|Ga0099829_10559980	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	950	Open in IMG/M
3300009038\|Ga0099829_10851219	All Organisms → cellular organisms → Bacteria → Acidobacteria	757	Open in IMG/M
3300009089\|Ga0099828_10104966	All Organisms → cellular organisms → Bacteria → Proteobacteria	2449	Open in IMG/M
3300009089\|Ga0099828_11663607	Not Available	562	Open in IMG/M
3300009137\|Ga0066709_101722489	All Organisms → cellular organisms → Bacteria → Acidobacteria	887	Open in IMG/M
3300009137\|Ga0066709_102701037	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300009137\|Ga0066709_104637329	Not Available	503	Open in IMG/M
3300009672\|Ga0116215_1072174	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300010046\|Ga0126384_10727062	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	882	Open in IMG/M
3300010358\|Ga0126370_10305991	Not Available	1263	Open in IMG/M
3300010358\|Ga0126370_10316937	All Organisms → cellular organisms → Bacteria	1244	Open in IMG/M
3300010359\|Ga0126376_10014796	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	4960	Open in IMG/M
3300010359\|Ga0126376_10076181	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	2475	Open in IMG/M
3300010362\|Ga0126377_10940185	Not Available	929	Open in IMG/M
3300010366\|Ga0126379_10179178	Not Available	2013	Open in IMG/M
3300010373\|Ga0134128_11445236	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. dw_53	757	Open in IMG/M
3300010376\|Ga0126381_103703322	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300010398\|Ga0126383_11145440	All Organisms → cellular organisms → Bacteria → Acidobacteria	867	Open in IMG/M
3300011269\|Ga0137392_10942421	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300011270\|Ga0137391_11317077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300011271\|Ga0137393_10114871	All Organisms → cellular organisms → Bacteria	2214	Open in IMG/M
3300012199\|Ga0137383_10448445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	945	Open in IMG/M
3300012202\|Ga0137363_10063941	All Organisms → cellular organisms → Bacteria	2685	Open in IMG/M
3300012205\|Ga0137362_10377321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1228	Open in IMG/M
3300012206\|Ga0137380_10973354	Not Available	726	Open in IMG/M
3300012210\|Ga0137378_10799927	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	855	Open in IMG/M
3300012210\|Ga0137378_11080625	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	717	Open in IMG/M
3300012349\|Ga0137387_10582937	All Organisms → cellular organisms → Bacteria → Acidobacteria	811	Open in IMG/M
3300012361\|Ga0137360_10729978	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	851	Open in IMG/M
3300012363\|Ga0137390_10840074	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	875	Open in IMG/M
3300012582\|Ga0137358_10403355	All Organisms → cellular organisms → Bacteria → Acidobacteria	925	Open in IMG/M
3300012685\|Ga0137397_10224495	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1398	Open in IMG/M
3300012957\|Ga0164303_11142829	Not Available	565	Open in IMG/M
3300012960\|Ga0164301_10487823	All Organisms → cellular organisms → Bacteria → Proteobacteria	885	Open in IMG/M
3300012971\|Ga0126369_12089771	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300016319\|Ga0182033_12139764	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	510	Open in IMG/M
3300017823\|Ga0187818_10355617	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300017928\|Ga0187806_1035698	All Organisms → cellular organisms → Bacteria → Acidobacteria	1483	Open in IMG/M
3300017943\|Ga0187819_10005983	All Organisms → cellular organisms → Bacteria	6727	Open in IMG/M
3300017943\|Ga0187819_10492893	Not Available	699	Open in IMG/M
3300017955\|Ga0187817_10967238	Not Available	545	Open in IMG/M
3300018038\|Ga0187855_10696758	Not Available	592	Open in IMG/M
3300020579\|Ga0210407_10359599	Not Available	1139	Open in IMG/M
3300020580\|Ga0210403_11095849	Not Available	619	Open in IMG/M
3300021478\|Ga0210402_10392301	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300021478\|Ga0210402_11560171	Not Available	587	Open in IMG/M
3300025922\|Ga0207646_11724094	Not Available	538	Open in IMG/M
3300025939\|Ga0207665_10183623	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1516	Open in IMG/M
3300027842\|Ga0209580_10574129	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300027862\|Ga0209701_10215260	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300027911\|Ga0209698_10125751	All Organisms → cellular organisms → Bacteria → Acidobacteria	2121	Open in IMG/M
3300027911\|Ga0209698_10623121	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	827	Open in IMG/M
3300028746\|Ga0302233_10227965	Not Available	709	Open in IMG/M
3300029636\|Ga0222749_10609965	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300029922\|Ga0311363_11186310	Not Available	646	Open in IMG/M
3300029943\|Ga0311340_11079672	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	654	Open in IMG/M
3300030043\|Ga0302306_10321164	Not Available	593	Open in IMG/M
3300030058\|Ga0302179_10352353	Not Available	648	Open in IMG/M
3300030509\|Ga0302183_10100564	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300030520\|Ga0311372_10175840	All Organisms → cellular organisms → Bacteria	3641	Open in IMG/M
3300030580\|Ga0311355_10850191	Not Available	833	Open in IMG/M
3300030659\|Ga0316363_10016082	All Organisms → cellular organisms → Bacteria	4218	Open in IMG/M
3300030706\|Ga0310039_10076561	All Organisms → cellular organisms → Bacteria	1431	Open in IMG/M
3300031231\|Ga0170824_102435327	Not Available	572	Open in IMG/M
3300031525\|Ga0302326_10162207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	3820	Open in IMG/M
3300031708\|Ga0310686_108757039	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300031718\|Ga0307474_10691871	Not Available	805	Open in IMG/M
3300031754\|Ga0307475_11250301	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300031823\|Ga0307478_11120951	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. dw_53	656	Open in IMG/M
3300031954\|Ga0306926_12735753	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	535	Open in IMG/M
3300031962\|Ga0307479_11800825	Not Available	564	Open in IMG/M
3300032205\|Ga0307472_100537355	All Organisms → cellular organisms → Bacteria	1017	Open in IMG/M
3300032782\|Ga0335082_10143628	Not Available	2317	Open in IMG/M
3300032805\|Ga0335078_10089667	All Organisms → cellular organisms → Bacteria → Acidobacteria	4459	Open in IMG/M
3300032805\|Ga0335078_10127734	All Organisms → cellular organisms → Bacteria	3628	Open in IMG/M
3300032892\|Ga0335081_10299071	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2133	Open in IMG/M
3300033158\|Ga0335077_10181606	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	2383	Open in IMG/M
3300033158\|Ga0335077_10807513	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300033158\|Ga0335077_10908444	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	886	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.17%
Host-Associated	Host-Associated	2.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.68%
Aquatic	Environmental → Aquatic	8.49%
Plants	Host-Associated → Plants	2.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.19%
Peat	Environmental → Terrestrial → Peat	8.49%
Freshwater	Environmental → Aquatic → Freshwater	5.66%
Sediment	Environmental → Aquatic → Sediment	2.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.89%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.43%
Loam	Environmental → Terrestrial → Soil → Loam	13.21%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	8.49%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.55%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.32%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.49%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	8.49%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.60%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	19.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.38%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.43%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.55%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.60%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.89%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.94%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006864	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066685_107203682	3300005180	Soil	EVPGYNLHIMLIGLGCLIGLTAVIAIARALRARSTLNENRMMRDYLRRIASDRNPDF*
Ga0066678_110115481	3300005181	Soil	SAEIPGYNLHIMLFGLGCVIGLAAVIAIARALRARNTLSENRKMREYLRRIGPDRNPDF*
Ga0066388_1005870622	3300005332	Tropical Forest Soil	MLIGLACVIGLTVVIAIARALKARSTLNENRLMRNYLRRIASDRNPDF*
Ga0070708_1000364003	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLFGLVCVIGLTAAIAIARALRTRNTLNENLRMREYLRRIGPDRNPDF*
Ga0066682_103761402	3300005450	Soil	MLIGLGCLIGLTAVIAIARALRARSTLNENRMMRDYLRRIASDRNP
Ga0066681_106059091	3300005451	Soil	NLHIMLIGLGCVIGLTAVIVITRALRARSMLNENRMMRDYLRRIASDRNPDF*
Ga0070707_1010946451	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLVGLGCVIALTAVIAFARALRARSTSNENRMMRDYLRRIASDRN
Ga0070707_1011788941	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MYLFSSPAIFSLVGLSFVIGFTFLIAVARMLRARSMLNENRKMRDYLRRIAPNQNPDF*
Ga0070699_1013196451	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MYLFSTPAIFSMVGLSFVIGFTFVIAVARVLKARSMLNENRKMRDYLRRIAPDRNP
Ga0070699_1018407041	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MLIGLGCVIGLTVVIAIARALKARSTLNENRMMRDYLRRIASDRNPDF*
Ga0070679_1017159392	3300005530	Corn Rhizosphere	EIPGYNLHIMLVVLGCVIGLTALIGFARALTVRSTLTENRMMRDYLRRIGSDSNSL*
Ga0070697_1015521252	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	PGYNLHIMLVVLGCVIGLTALIGFARALTVRSTLTENRMMRDYLRRIGSDSNSL*
Ga0070731_100181272	3300005538	Surface Soil	MLTPAQRERYNFSAMWVALGCVIGLGAFIAIARALRARSTISENRLMRDYLRRIASDRNSDF*
Ga0070732_101531383	3300005542	Surface Soil	MLTCVSRRPLAEVPGYNLHIMLVGLGCVIRLTALIAIARELRARTTLNENRMMRDYLRRIASDRNPDF*
Ga0070695_1000843193	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	IGLTALIGFARALTVRSTLTENRMMRDYLRRIGSDSNSL*
Ga0066903_1006640371	3300005764	Tropical Forest Soil	DSARRGRSAEVPGYNLHIMLIGLGCVIGLTVVIAIARALKARSTLNENRLMRNYLRRIASDRNPDF*
Ga0075024_1006521262	3300006047	Watersheds	MYLFSTPAISSLVGLSFVIGFTFVIAVARMLRARSMLNENRKMRDYLRRIAPDRNPDF*
Ga0070715_102207932	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MLAVFGCVIGLTALVGVGPALKARSTVNGNRVMRDYLPWIATDS
Ga0070716_1008759332	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VEIPGYNLHIMLVVLGCVIGLTALIGFARALTVRSTLTENRMMRDYLRRIGSDSNSL*
Ga0068871_1023712071	3300006358	Miscanthus Rhizosphere	LGCVIGLTAVIAIARMLKARSTLNENRTMRDYLRRIASDSNPL*
Ga0066665_104449083	3300006796	Soil	MRLGSARPVDGVPGYNRHIMLIGLGCLIGLTAVIAIARALRARSTLNENRMMRDYLRRIASDRNPDF*
Ga0075425_1020940741	3300006854	Populus Rhizosphere	PGYNLHIMLVVLGCVIGLTALIGIARALRARSTLNENRMMRDYLRRIASDSNSL*
Ga0075425_1030164092	3300006854	Populus Rhizosphere	MLVVLGCVIGLTALIGFARALTVRSTLTESRMMRDYLRRIGSDSNSL*
Ga0066797_10973841	3300006864	Soil	MLVGLGCVIGLTVIIAIARALRARSTLNENRMMRDYLRRVASDRNPEF*
Ga0066710_1029494571	3300009012	Grasslands Soil	IPGYNLHIMAVGLGCVIGLTAVIAIARALRARNTLNENRRMREYLRRIGPDRNPDFSNPHLSD
Ga0099829_100974521	3300009038	Vadose Zone Soil	GCVIGLTVVIAIARALKARSTLNENRMMRDYLRRIATDRN*
Ga0099829_104516011	3300009038	Vadose Zone Soil	MLVGLGCVIGLAAVIAIARAFRTRSMLNENRMMRDYLRRIASDRNDF*
Ga0099829_105599802	3300009038	Vadose Zone Soil	RGRSAEVPGYNLHIMLIGLGCVIGLTVVIAIARALKARSTLNENRMMRDYLRRIASDRNPDF*
Ga0099829_108512192	3300009038	Vadose Zone Soil	MLVALGCVIGLTAVIAIARALRARSTLNENRMMRDYLRRIASDRN
Ga0099828_101049663	3300009089	Vadose Zone Soil	MMLVGLGCVIGLTAVIAIARALRARSTLNENRMMRDYLRRIASDRNPDF*
Ga0099828_116636071	3300009089	Vadose Zone Soil	EVPGYNLHIMLVGLGCVIGLTAVIAIARAFRTRSMLNENRMMRDYLRRIASDRNSDF*
Ga0066709_1017224891	3300009137	Grasslands Soil	MRTRVGGGRSAEIPGYNLHIMLFGLGCVIGLAAVIAIARALRARNTLSENRRIREYLRRIGPDRNPDF*
Ga0066709_1027010371	3300009137	Grasslands Soil	RDRSAEVPGYNLHIMLIGLGCVIGLTAVIVITRALRARSMLNENRMMRDYLRRIASDRNPDF*
Ga0066709_1046373291	3300009137	Grasslands Soil	TEIPGLNLHIMLFGLEGVISLTAVIAITRALRARNTLNENRRMREYLRRIGPDRNPDFSNPHLSD*
Ga0116215_10721742	3300009672	Peatlands Soil	MLVVLGCVIGLAAVIAIARALKARSTLNENRRMRNYLRRITSDRNPDF*
Ga0126384_107270621	3300010046	Tropical Forest Soil	MLIGLGCVIGLAVVIAIARALKARSTLNENRLMRNYLRRIASDRNPDF*
Ga0126370_103059912	3300010358	Tropical Forest Soil	MTGKRVLLPQMCALMRLGSAGSVGRHPGYNLHIMLIGLGCVIGLTAVIAIARMLRARSTLNENRTMRDYLRRIATDRN*
Ga0126370_103169371	3300010358	Tropical Forest Soil	VVIAIARALKARSTLNENRLMRNYLRRIASDRNPDF*
Ga0126376_100147967	3300010359	Tropical Forest Soil	MLVGLGCVVGLIVVIAIARAVRARRLNESRMMRDYLRRIASDQNPDF*
Ga0126376_100761811	3300010359	Tropical Forest Soil	HIMLIGLGCVIGLTAVIAIARMLRARSTLNENRTMRDYLRRIATDRN*
Ga0126377_109401852	3300010362	Tropical Forest Soil	MLVGLGCVIGLIVVIAIARAVRARRLNESRMMRDYLRRIASDQNPDF*
Ga0126379_101791782	3300010366	Tropical Forest Soil	MLIGLGCVIGLTVVIAIARALKARSTLNENRLMRNYLRRIASDRNPDF*
Ga0134128_114452361	3300010373	Terrestrial Soil	VEIPGYNLHIMLVVLGCVIGLTALIGFARALTVRSTLTENRMMRDYLRRIASDSNSL*
Ga0126381_1037033221	3300010376	Tropical Forest Soil	LLRTFAISSLVGLCFVIAFTFAIAVAPVLRARSMLNENRKMRDYLRRIAPNQNPDF*
Ga0126383_111454402	3300010398	Tropical Forest Soil	MLVGLGCVIGLIVVIAIARAVRARRLNESRMMRDYLRRIAS
Ga0137392_109424211	3300011269	Vadose Zone Soil	MLIGLGCVIGLTVVIAIARALKARSTLNENRMMRDYLRRIATDRILCF*
Ga0137391_113170771	3300011270	Vadose Zone Soil	MLVGLGCVIGLAAVIAIARALRARSTLNENRMMRDYLRRIASDRNSDF*
Ga0137393_101148712	3300011271	Vadose Zone Soil	MLVGLGCVIGLTAVIAIARALRARSTLNENRMMRDYLRRIASDRN
Ga0137383_104484452	3300012199	Vadose Zone Soil	MLIGLGGVIGLTFVIAIARALKARSTLNENRMMRDYLRRIASDRNPDF*
Ga0137363_100639411	3300012202	Vadose Zone Soil	MLIGLGCVIGLTVVIAIARALKARSTLNENRMMRDYLRRIATDRN*
Ga0137362_103773211	3300012205	Vadose Zone Soil	MRTRVGGGRSAEIPGYNLHIMLFGLGCVIGLAAVIAIARALRARNTLSENRKMREYLRRIGPDRNPDF*
Ga0137380_109733541	3300012206	Vadose Zone Soil	VVIATVRAVLARNALNQNRMMRDYLRRIASDRNPDF*
Ga0137378_107999273	3300012210	Vadose Zone Soil	LVVLGCVIGLTAIIAIARALRARSTLNENRMMRDYLRRTASDRNSDF*
Ga0137378_110806252	3300012210	Vadose Zone Soil	MLVGFGCVIGLTAVIAIARALRARSTLNENRMMRDYLRRIASDRNPDF*
Ga0137387_105829371	3300012349	Vadose Zone Soil	MLVGLGCVIGLAVVMAIARALRARSTLNENRMMRDYLRRIASDRNPDF*
Ga0137360_107299782	3300012361	Vadose Zone Soil	EVPGYNLHFILVGFGCVIALTAVIAIARALRARSTLNENRMMCDYLRRIASDRNPDF*
Ga0137390_108400741	3300012363	Vadose Zone Soil	SRIVGCRRDRSGEFPGYNLPIMVVGLACVVGLAVVVATVRAVSARNTLNRNRMMRDYLRRIASDRNPDF*
Ga0137358_104033551	3300012582	Vadose Zone Soil	MLFGLGCVIGLAAVIAIARALRARNTLSENRKMREYLRRIGPDRNPDF*
Ga0137397_102244953	3300012685	Vadose Zone Soil	MLFGLGCVIGLAAVIAIARALRARNTLSENRRMREYLRRIGPDRNPDF*
Ga0164303_111428292	3300012957	Soil	NLHIMLIVLGCVIGLTALIAIARVLRARSTLNQNRTMRDYLRRIGSDRKPDF*
Ga0164301_104878232	3300012960	Soil	MLIGLGCVIGLIAVIAIARAVRARSVLNENRMMRDYIRRSDPNRDL
Ga0126369_120897711	3300012971	Tropical Forest Soil	LSTLEISSLVGLCFVIAFTFAIAIARVLRARSMLNENRKMRDYLRRIAPNQNPDF*
Ga0182033_121397642	3300016319	Soil	QGGRSADVRGHDLHIMLIGFGCVIGLTAVIAIARALRARNTLNENRIMRDHLRRIASDRSPDF
Ga0187818_103556172	3300017823	Freshwater Sediment	RSAEVPGYNLHIMLIGLGCVIGLTAVIAIARALRARSTLNENRMMRDYLRRIASDRNPDF
Ga0187806_10356983	3300017928	Freshwater Sediment	VPGYNLHIMLVVLGFVVGLAAVIGIARAFRARSMLNENRRMRNYLRRIGSDSNSL
Ga0187819_100059837	3300017943	Freshwater Sediment	MLIGLGCVIGLTAVIAIARALRARSTLNENRMMRDYLRRIASDRNPDF
Ga0187819_104928932	3300017943	Freshwater Sediment	MLVGLGCVIVLTAVIAIARALRARSTLNENRMMRDYLRRIASD
Ga0187817_109672381	3300017955	Freshwater Sediment	MLVGLGCVIALTAVIAIARALRARSMLNENRMMRDYLRRIASDRN
Ga0187855_106967581	3300018038	Peatland	MLVVLGFVVGLTAVIGIARALRARSMLNENRRMRNYLRRIGSDS
Ga0210407_103595991	3300020579	Soil	MLVVLGCVIGLTAVIAIARVLRARKTLNENRMMRDYLGRIASDRNPDF
Ga0210403_110958492	3300020580	Soil	GCRDQSSAGWEVPGYNLHIMMVVLGCVIGVTAVIAIVRVLRVQRTLKENRMMRNYLRRIASDSNSL
Ga0210402_103923013	3300021478	Soil	MLVGLGCVIGLTAVIAIARALRARSTLNENRTMRDY
Ga0210402_115601711	3300021478	Soil	PGYNLQIVLVALGCVIGLTAVIAIARALRARSTHNENQMMRNYLRRIAADRHRDF
Ga0207646_117240942	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MLIGLGCVIGLTVVIAIARALKARSTLNENRMMRDYLRRIASDRNPDF
Ga0207665_101836231	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MLVVLGCVIGLTALIGFARALTVRSTLTENRMMRDYLRRIGSDSNSL
Ga0209580_105741291	3300027842	Surface Soil	MLVGLGCVIRLTALIAIARELRARTTLNENRMMRDYLRRIASDRNPDF
Ga0209701_102152601	3300027862	Vadose Zone Soil	NFHIMLVALGCVIGLTAVIAIARMLRARSTLNENRTMRDYLRRIATDRN
Ga0209698_101257514	3300027911	Watersheds	MYLFSTPAISSLVGLSLVIGFTFVIAVARVLRARSMLNENRKMRDYLRRIAPDRNPDF
Ga0209698_106231211	3300027911	Watersheds	MYLFSTPAISSLVGLSFVIGFTFVIAVARMLRARSMLNENRKMRDYLRRIAPDRNPDF
Ga0302233_102279651	3300028746	Palsa	TEFATLRKGYNPHSMLIGLGCVIGLIAAIAIARTLRARSSRNEKRKMRDYLQRITSDRNSDF
Ga0222749_106099652	3300029636	Soil	SAWRGRSAGVPGYNLHIMLIGLGCVIGLTVVVAIARALKARSTLNENRMMRDYLRRIASDRNPDF
Ga0311363_111863101	3300029922	Fen	GCVIGLIAAIAIARTLRARSSRNEKRKMRDYLQRITSDRNSDF
Ga0311340_110796722	3300029943	Palsa	MLVGLGCVIGFMAAIAIVRALRKRSSLDENRKMRDYLQR
Ga0302306_103211642	3300030043	Palsa	MLIGLGCVIGLIAAIAIARTLRARSSRNEKRKMRDYLQRITSDRNSDF
Ga0302179_103523532	3300030058	Palsa	MLVGLGCVIGFMAAIAIVRALRKRSSLDENRKMRDYLQRISSDRNPDF
Ga0302183_101005641	3300030509	Palsa	LRKGYNPHSMLIGLGCVIGLIAAIAIARTLRARSSRNEKRKMRDYLQRITSDRNSDF
Ga0311372_101758403	3300030520	Palsa	MLIGLGCVIGLIAAIAIARTLRARSSRNEKRKMRDYLQRITSDRNSD
Ga0311355_108501912	3300030580	Palsa	NPHSMLIGLGCVIGLIAAIAIARTLRARSSRNEKRKMRDYLQRITSDRNSDF
Ga0316363_100160824	3300030659	Peatlands Soil	GENHGYNLHIMLVVLGCLIGLAAAIGIARALRVRSMLNENRRMRNYLRRIGSDSNSL
Ga0310039_100765611	3300030706	Peatlands Soil	MLVVLGCVIGLAAVIAIARALKARSTLNENRRMRNYLRRITSDRNPDF
Ga0170824_1024353272	3300031231	Forest Soil	VEISGYNLHIMLVVLGCVIGLTAVIAIARALRARSMLNENRRMRNYLRRIASDSNSL
Ga0302326_101622072	3300031525	Palsa	MLIGLGCVIGFIAAIAIARVLRARSLLHENRKMRDYIRRTTSDRNPDF
Ga0310686_1087570392	3300031708	Soil	MLVGLGFVIALVAVIAIAQALKARSRVNENRMMRDYLRRITSDRNRDF
Ga0307474_106918711	3300031718	Hardwood Forest Soil	MLVVFGCLIGLAAVIGMAWMLRARSTLNKNRMMRDYLRRIASDSNSL
Ga0307475_112503011	3300031754	Hardwood Forest Soil	GSVEVPSYNLHIMLIGLGCVIGLTAVIAIARALRARSTLNENRMMRDYLQRIASDRNPDF
Ga0307478_111209511	3300031823	Hardwood Forest Soil	HIMLVVLGCVIGLAAVIGIARALRARSTLSENRRMRDYLRRIASDSNSS
Ga0306926_127357532	3300031954	Soil	LHIMLIGFGCVIGLTAVIAIARALRARNTLNENRIMRDHLRRIASDRSPDF
Ga0307479_118008251	3300031962	Hardwood Forest Soil	MLVGLGCVIGLAAVIAIARALRARSTLNENRMMRDYLRRIASDRNSDF
Ga0307472_1005373551	3300032205	Hardwood Forest Soil	MLVGLGCVIGLAAVIAIARALRARSTLNENRMMRDYLRR
Ga0335082_101436282	3300032782	Soil	MYLFRTPAIFSLVGLSFVIGFTFVIAVARVLRARSMLNENRKMRDYLRRIAPDR
Ga0335078_100896671	3300032805	Soil	MLVGLGCVIALTAVIAIARALRARSMLNENRMMRDYLRRIASD
Ga0335078_101277342	3300032805	Soil	MLIGLGCVIGLTAVIAIARALRARSMLNENRMMRDYLRRIASDRNPDF
Ga0335081_102990712	3300032892	Soil	GYNLHVMLVGLGCVIALTAVIAIARALRARSMLNENRMMRDYLRRIASDRNPDF
Ga0335077_101816061	3300033158	Soil	MLIGLGCVIGLTAVIAIARALRARRMLNENRMMRDYLRRIASDRNPD
Ga0335077_108075132	3300033158	Soil	GCVIGLTAVIAIARALRARRMLNENRMMRDYLRRIASDRNPDF
Ga0335077_109084443	3300033158	Soil	EVPGYNLHIMLIGLGCVIGLTAVIAIARALRARSTLNENRMMRHYLRRIASDRNPDF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094474

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences