Metagenome / Metatranscriptome Family F094465

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094465
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	46 residues
Representative Sequence	MSRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVE
Number of Associated Samples	96
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.17 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	88.68 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.755 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (23.585 % of family members)
Environment Ontology (ENVO)	Unclassified (27.358 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.170 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.79% β-sheet: 0.00% Coil/Unstructured: 45.21%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00724	Oxidored_FMN	16.04
PF10944	DUF2630	3.77
PF03320	FBPase_glpX	1.89
PF01850	PIN	1.89
PF01381	HTH_3	1.89
PF13683	rve_3	1.89
PF13506	Glyco_transf_21	0.94
PF03932	CutC	0.94
PF04014	MazE_antitoxin	0.94
PF00210	Ferritin	0.94
PF14534	DUF4440	0.94
PF01594	AI-2E_transport	0.94
PF00248	Aldo_ket_red	0.94
PF07929	PRiA4_ORF3	0.94
PF16916	ZT_dimer	0.94
PF13744	HTH_37	0.94
PF04480	DUF559	0.94
PF08818	DUF1801	0.94
PF02646	RmuC	0.94
PF11138	DUF2911	0.94
PF02922	CBM_48	0.94
PF05977	MFS_3	0.94
PF05717	TnpB_IS66	0.94
PF00072	Response_reg	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	16.04
COG1902	2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family	Energy production and conversion [C]	16.04
COG1494	Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase or related protein	Carbohydrate transport and metabolism [G]	1.89
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.94
COG1322	DNA anti-recombination protein (rearrangement mutator) RmuC	Replication, recombination and repair [L]	0.94
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.94
COG3142	Copper homeostasis protein CutC	Inorganic ion transport and metabolism [P]	0.94
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.94
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.94
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.75 %
Unclassified	root	N/A	29.25 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.75 %
Unclassified	root	N/A	29.25 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.75 %
Unclassified	root	N/A	29.25 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	33.02 %
Unclassified	root	N/A	29.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.25 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	15.09 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.77 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.26 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.77 %
Acidobacteria bacterium 13_2_20CM_2_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_57_6	2.83 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	1.89 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.26 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	3.77 %
Acidobacteria bacterium 13_2_20CM_2_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_57_6	2.83 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1.89 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.26 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.77 %
Acidobacteria bacterium 13_2_20CM_2_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_57_6	2.83 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1.89 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.26 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.77 %
Acidobacteria bacterium 13_2_20CM_2_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_57_6	2.83 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1.89 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.26 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.77 %
Acidobacteria bacterium 13_2_20CM_2_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_57_6	2.83 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1.89 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10177911	Not Available	1430	Open in IMG/M
3300001661\|JGI12053J15887_10642174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300005167\|Ga0066672_10282907	All Organisms → cellular organisms → Bacteria → Acidobacteria	1074	Open in IMG/M
3300005177\|Ga0066690_10637089	Not Available	710	Open in IMG/M
3300005180\|Ga0066685_10651071	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724	Open in IMG/M
3300005447\|Ga0066689_10270897	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300005459\|Ga0068867_100718774	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300005576\|Ga0066708_10326548	Not Available	984	Open in IMG/M
3300005921\|Ga0070766_11197578	Not Available	525	Open in IMG/M
3300006034\|Ga0066656_10742700	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	629	Open in IMG/M
3300006163\|Ga0070715_10341577	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300006163\|Ga0070715_11103990	Not Available	500	Open in IMG/M
3300006175\|Ga0070712_100046625	All Organisms → cellular organisms → Bacteria	2997	Open in IMG/M
3300006175\|Ga0070712_101459451	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300006354\|Ga0075021_10967776	Not Available	554	Open in IMG/M
3300006796\|Ga0066665_11552244	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300006800\|Ga0066660_10834633	Not Available	751	Open in IMG/M
3300007255\|Ga0099791_10538617	Not Available	568	Open in IMG/M
3300007255\|Ga0099791_10575317	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300009088\|Ga0099830_10965875	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300009143\|Ga0099792_10540457	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300009548\|Ga0116107_1128594	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	719	Open in IMG/M
3300009630\|Ga0116114_1107269	Not Available	737	Open in IMG/M
3300009792\|Ga0126374_11610598	Not Available	537	Open in IMG/M
3300010048\|Ga0126373_11756245	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300010303\|Ga0134082_10081778	Not Available	1265	Open in IMG/M
3300010325\|Ga0134064_10224206	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_57_6	684	Open in IMG/M
3300010343\|Ga0074044_10325617	Not Available	1009	Open in IMG/M
3300011120\|Ga0150983_12803192	All Organisms → cellular organisms → Bacteria → Acidobacteria	861	Open in IMG/M
3300011270\|Ga0137391_10916628	All Organisms → cellular organisms → Bacteria → Acidobacteria	716	Open in IMG/M
3300012096\|Ga0137389_10703110	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300012096\|Ga0137389_11478829	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300012189\|Ga0137388_10452371	All Organisms → cellular organisms → Bacteria → Acidobacteria	1191	Open in IMG/M
3300012202\|Ga0137363_10710077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	851	Open in IMG/M
3300012207\|Ga0137381_10600725	All Organisms → cellular organisms → Bacteria → Acidobacteria	959	Open in IMG/M
3300012210\|Ga0137378_10016591	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6412	Open in IMG/M
3300012211\|Ga0137377_11705993	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300012361\|Ga0137360_10593750	Not Available	948	Open in IMG/M
3300012362\|Ga0137361_11731253	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300012582\|Ga0137358_10692606	Not Available	681	Open in IMG/M
3300012685\|Ga0137397_10212332	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1440	Open in IMG/M
3300012918\|Ga0137396_10705364	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300012922\|Ga0137394_11171902	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300012927\|Ga0137416_11607630	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	592	Open in IMG/M
3300012987\|Ga0164307_11021440	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300013308\|Ga0157375_10652619	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300014157\|Ga0134078_10201917	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_57_6	811	Open in IMG/M
3300014165\|Ga0181523_10149698	All Organisms → cellular organisms → Bacteria	1374	Open in IMG/M
3300015264\|Ga0137403_10103330	All Organisms → cellular organisms → Bacteria	2856	Open in IMG/M
3300015264\|Ga0137403_10702204	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300015358\|Ga0134089_10414414	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300016422\|Ga0182039_11116606	All Organisms → cellular organisms → Bacteria → Acidobacteria	710	Open in IMG/M
3300017659\|Ga0134083_10100842	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300017939\|Ga0187775_10094817	All Organisms → cellular organisms → Bacteria → Acidobacteria	993	Open in IMG/M
3300017942\|Ga0187808_10474333	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300017955\|Ga0187817_10332463	Not Available	969	Open in IMG/M
3300017972\|Ga0187781_10744318	All Organisms → cellular organisms → Bacteria → Acidobacteria	710	Open in IMG/M
3300017996\|Ga0187891_1262787	Not Available	571	Open in IMG/M
3300017999\|Ga0187767_10097063	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300018004\|Ga0187865_1163957	Not Available	772	Open in IMG/M
3300018006\|Ga0187804_10130557	All Organisms → cellular organisms → Bacteria → Acidobacteria	1049	Open in IMG/M
3300018008\|Ga0187888_1045028	All Organisms → cellular organisms → Bacteria	2069	Open in IMG/M
3300018012\|Ga0187810_10027988	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	2058	Open in IMG/M
3300018013\|Ga0187873_1038708	All Organisms → cellular organisms → Bacteria	2163	Open in IMG/M
3300018026\|Ga0187857_10051003	All Organisms → cellular organisms → Bacteria	2121	Open in IMG/M
3300018433\|Ga0066667_12298865	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	505	Open in IMG/M
3300018468\|Ga0066662_10840620	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300019788\|Ga0182028_1013355	Not Available	702	Open in IMG/M
3300020199\|Ga0179592_10012798	All Organisms → cellular organisms → Bacteria	3655	Open in IMG/M
3300020579\|Ga0210407_10527684	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300021046\|Ga0215015_10677706	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300021168\|Ga0210406_11205649	Not Available	550	Open in IMG/M
3300021170\|Ga0210400_10739205	Not Available	808	Open in IMG/M
3300021401\|Ga0210393_10704514	Not Available	823	Open in IMG/M
3300021401\|Ga0210393_11014475	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300021405\|Ga0210387_10434739	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1164	Open in IMG/M
3300021407\|Ga0210383_10038571	All Organisms → cellular organisms → Bacteria	3987	Open in IMG/M
3300023090\|Ga0224558_1113385	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	924	Open in IMG/M
3300025459\|Ga0208689_1053472	Not Available	823	Open in IMG/M
3300025922\|Ga0207646_10723958	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	889	Open in IMG/M
3300025939\|Ga0207665_11055449	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300026301\|Ga0209238_1165372	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	658	Open in IMG/M
3300026301\|Ga0209238_1194428	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_57_6	595	Open in IMG/M
3300026318\|Ga0209471_1073422	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300026320\|Ga0209131_1260773	Not Available	679	Open in IMG/M
3300026323\|Ga0209472_1180543	Not Available	752	Open in IMG/M
3300026329\|Ga0209375_1246682	Not Available	603	Open in IMG/M
3300026482\|Ga0257172_1043650	Not Available	818	Open in IMG/M
3300026507\|Ga0257165_1098406	Not Available	543	Open in IMG/M
3300026548\|Ga0209161_10185970	All Organisms → cellular organisms → Bacteria → Acidobacteria	1166	Open in IMG/M
3300026551\|Ga0209648_10229068	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300026557\|Ga0179587_10011072	All Organisms → cellular organisms → Bacteria	4665	Open in IMG/M
3300026557\|Ga0179587_10405297	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	889	Open in IMG/M
3300027173\|Ga0208097_1036656	Not Available	568	Open in IMG/M
3300027645\|Ga0209117_1043414	Not Available	1356	Open in IMG/M
3300028536\|Ga0137415_10101260	All Organisms → cellular organisms → Bacteria	2733	Open in IMG/M
3300028800\|Ga0265338_11223448	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300029636\|Ga0222749_10241600	All Organisms → cellular organisms → Bacteria → Acidobacteria	916	Open in IMG/M
3300030991\|Ga0073994_10072703	Not Available	1730	Open in IMG/M
3300031715\|Ga0307476_10136121	All Organisms → cellular organisms → Bacteria → Acidobacteria	1757	Open in IMG/M
3300031823\|Ga0307478_10030890	All Organisms → cellular organisms → Bacteria	3863	Open in IMG/M
3300031823\|Ga0307478_10642826	All Organisms → cellular organisms → Bacteria → Acidobacteria	888	Open in IMG/M
3300032805\|Ga0335078_10878969	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1080	Open in IMG/M
3300033158\|Ga0335077_11475601	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300033158\|Ga0335077_11903402	Not Available	555	Open in IMG/M
3300033402\|Ga0326728_10525623	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.17%
Host-Associated	Host-Associated	2.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.96%
Aquatic	Environmental → Aquatic	13.21%
Plants	Host-Associated → Plants	2.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.08%
Freshwater	Environmental → Aquatic → Freshwater	12.26%
Peat	Environmental → Terrestrial → Peat	1.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.89%
Sediment	Environmental → Aquatic → Sediment	0.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.21%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.26%
Loam	Environmental → Terrestrial → Soil → Loam	11.32%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.08%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.15%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.60%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.66%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.66%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.77%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	23.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.38%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.66%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.66%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.94%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.94%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.94%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009548	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019788	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300025459	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_101779111	3300001593	Forest Soil	MSGAALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVEAGLQALQDLRKL
JGI12053J15887_106421743	3300001661	Forest Soil	MSRALTRTNLLLESGKVQQLRKTLHSRSNSEAVRRVIEERLAVEAGLGALRT
Ga0066672_102829071	3300005167	Soil	MSRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLA
Ga0066690_106370892	3300005177	Soil	MSRAALTRTNLLLEVGKVRRLRKALQSRSNSEAVRRVIDERLAVEAGLQALQDLRK
Ga0066685_106510711	3300005180	Soil	MSRALTRTNLLLESGKVQQLRKILHSRSNSEAVRRVIEERLAVEA
Ga0066689_102708973	3300005447	Soil	MSRAALTRTNLLLETGKVQRLRKALQSRSNSEAVRRVIDERLA
Ga0068867_1007187743	3300005459	Miscanthus Rhizosphere	MGRVLTRTNLLLESGKVRQLRKTLHSRSNSEAVRRVIEERLAVEAGLGALRTLREL
Ga0066708_103265481	3300005576	Soil	MSRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRLVIDERLAVEAGLQALQDLRKLG
Ga0070766_111975781	3300005921	Soil	MSRALTRTNLLLESGKVQQLRKTLRSRSNSEAVRRVIEERLAVEAGLGALRTL
Ga0066656_107427003	3300006034	Soil	MSRTALTRTNLLLETGKVRRLRNALQSRSNSEAVR
Ga0070715_103415771	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MSRALTRTNLLLESGKVRQLRKTLHSRSNSEAVRRVIEERL
Ga0070715_111039902	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MSRALTRTNLLLESGKVQQLRKTLHSRSNSEAVRRVIEE
Ga0070712_1000466251	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSRALTRTNLLLESGKVRQLRKTLHSRSNSEAVRRVIEERLAVEAGLGA
Ga0070712_1014594513	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MGRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVE
Ga0075021_109677762	3300006354	Watersheds	MPKATLTRTNLVLETEKIRRLRKALRSRSNSEAVRLVIDERLAVEAG
Ga0066665_115522441	3300006796	Soil	MSRTALTRTNLLLETGKVRRLRKALQSRSNSEAVR
Ga0066660_108346331	3300006800	Soil	MSRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVID
Ga0099791_105386172	3300007255	Vadose Zone Soil	MGRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVEVGLQ
Ga0099791_105753171	3300007255	Vadose Zone Soil	MGRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRR
Ga0099830_109658751	3300009088	Vadose Zone Soil	MSRAALTRTNLLLDVGKVQRLRKALQSRSNSEAVRRVIDERLA
Ga0099792_105404572	3300009143	Vadose Zone Soil	MSGALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVEAGL
Ga0116107_11285942	3300009548	Peatland	MSNVALTRTNLLLETAKVRRLRKALGSASNSEAVRRVINERLAVEAGLQALRD
Ga0116114_11072692	3300009630	Peatland	MSKVALTRTNLLLETAKVRRLRNALGSPSNSAAVRRVINERLAVEAGLGALRDLR
Ga0126374_116105981	3300009792	Tropical Forest Soil	MNRAALTRTNLLLEVGKVRKLRKALRSRSNSEAVRRVIDERLAVETGL
Ga0126373_117562452	3300010048	Tropical Forest Soil	MSKPALTRTNLLLEASKVRRLRTALQSRSNSEAVRRVIDERLAVEA
Ga0134082_100817781	3300010303	Grasslands Soil	MSRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRLVIDERLAVEAGLQALQDL
Ga0134064_102242062	3300010325	Grasslands Soil	MSGPALTRTNLLLETGKVRRLRRALQSRSNSEAVRRVIDERLA
Ga0074044_103256172	3300010343	Bog Forest Soil	MWDYTLEGGMRQAALTRTNLLLETGKVRQLRKALQSRSNSAAVRRAIDERLA
Ga0150983_128031921	3300011120	Forest Soil	VAMSRALTRTNLLLESRKVQQLRKTLHSRSNSEAVRRVIEERLAVEAGLGALRTLGS*
Ga0137391_109166282	3300011270	Vadose Zone Soil	TRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVEAGLQALQNLRKLGGP*
Ga0137389_107031101	3300012096	Vadose Zone Soil	MSGAALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDE
Ga0137389_114788292	3300012096	Vadose Zone Soil	MSGALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVE
Ga0137388_104523711	3300012189	Vadose Zone Soil	MGRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVEAGL
Ga0137363_107100771	3300012202	Vadose Zone Soil	MSGAALTRTNLLLETGKVRRLRKALQSRSNSEAVRR
Ga0137381_106007251	3300012207	Vadose Zone Soil	MGRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVEAGLQALQ
Ga0137378_100165918	3300012210	Vadose Zone Soil	MGRTALTRTNLLLETGKVRRLRKALQARSNSEAVRRVID
Ga0137377_117059932	3300012211	Vadose Zone Soil	MGRTALTRTNLLLETGKVRQLRKALQSRSNSEAVRRVIDERLAVEAGLQALQ
Ga0137360_105937501	3300012361	Vadose Zone Soil	MSRALTRTNLLLESGKVQQLRKALHSRSNSEAVRRVIEERLAVEAGL
Ga0137361_117312531	3300012362	Vadose Zone Soil	MGRTVLTRTNLLLETGKVRRLRKALQSRSNSEAVRRVI
Ga0137358_106926062	3300012582	Vadose Zone Soil	LSRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVI
Ga0137397_102123321	3300012685	Vadose Zone Soil	MSGALTPTNLSLETGKVQRLRKALQSRSKSEAVRRVI
Ga0137396_107053641	3300012918	Vadose Zone Soil	MSGALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDER
Ga0137394_111719021	3300012922	Vadose Zone Soil	MGRTALTRTNLLLETGKVRRLRKALQSRSNTEAVRSVIDERLA
Ga0137416_116076301	3300012927	Vadose Zone Soil	LSRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRR
Ga0164307_110214401	3300012987	Soil	MGRAALTRTNLLLDIGKGQRLRKARQSRSNAEAVRRVIDERLAGEAGLQ
Ga0157375_106526194	3300013308	Miscanthus Rhizosphere	MGRVLTRTNLLLESGKVRQLRKTLHSRSNSEAVRRVIEERLAVEAGLGA
Ga0134078_102019171	3300014157	Grasslands Soil	MSGPALTRTNLLLETGKVRRLRRALQSRSNSEAVRRVIDERLAAEAGLQALQNLRKL
Ga0181523_101496981	3300014165	Bog	MSRVALTRTNLVLETRKVRQLRKALRTRSNSEAVRLVIDQRLAIEAGLQALRKLR
Ga0137403_101033301	3300015264	Vadose Zone Soil	MGRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAV
Ga0137403_107022041	3300015264	Vadose Zone Soil	MSRAALTRTNLLLETGKVQRLRKALQSRSNSEAVRRVIDERLAV
Ga0134089_104144142	3300015358	Grasslands Soil	MGRAALTRTNLLLEVGKVQRLRKALQSRSNSEAVRRVIDERLAVEAGLQALQNLRRL
Ga0182039_111166061	3300016422	Soil	MARTALTRTNLLLETWKVRQLRKALQSRSNSEAVRRVIDERLAVEAGLQALQDL
Ga0134083_101008422	3300017659	Grasslands Soil	MGRAALTRTNLLLEVGKVQRLRKALQSRSNSEAVRRVIDERLAVEA
Ga0187775_100948171	3300017939	Tropical Peatland	VFLLTRTNLLLEVGKVRPLRKVLQSRSNSEAVRLVIDERLAV
Ga0187808_104743332	3300017942	Freshwater Sediment	LALTRTNLFLETGKVRRLRKALRSRSNSEAVRRVIDERLAVEAGLEALRDLRKLGG
Ga0187817_103324632	3300017955	Freshwater Sediment	MNRATLTRTNLLLETGKVRRLREALRSRSNSEAVRLVIDE
Ga0187781_107443183	3300017972	Tropical Peatland	VGRAVLTRTNLLLEVGKVRRLRKALQSRSNSEAVRLVIDERLAVEVGLQALW
Ga0187891_12627871	3300017996	Peatland	MSKVALTRTNLLLETAKVRRLRNALGSPSNSAAVRRVINERLAVEAGLGALRDLRRLG
Ga0187767_100970632	3300017999	Tropical Peatland	MSGAGLTRTNLLLETDKVRQLRRALRSRSNSEAVRRA
Ga0187865_11639571	3300018004	Peatland	MSKVALTRTNLLLETTKVRRLRKALGSPSNSEAVRRVINERLAV
Ga0187804_101305571	3300018006	Freshwater Sediment	MSRAALTRTNLLLETGKVRRLREALRSRSNSEAVRLVIDERLAVEAG
Ga0187888_10450286	3300018008	Peatland	MSNVALTRTNLLLETAKVRRLRKALGSASNSEAVRRVINERLAVEAGL
Ga0187810_100279884	3300018012	Freshwater Sediment	MSRAALTRTNLLLETGKVRRLREALQSRSNSEAVRLVIDERLAV
Ga0187873_10387081	3300018013	Peatland	MSNVALTRTNLLLETAKVRRLRKALGSASNSEAVRRVINERLAVEAG
Ga0187857_100510036	3300018026	Peatland	MSNVALTRTNLLLETAKVRRLRKALGSASNSEAVRRVINERLAVEAGLQALRDL
Ga0066667_122988651	3300018433	Grasslands Soil	MSRSALTRTNRLLETGKVRRLRNALQSRSNSEAVRRVIDERLAVE
Ga0066662_108406201	3300018468	Grasslands Soil	MSRAALTRTNLLLETGKVQRLRKALQSRSNSEAVRRVIDERLAVEAGLQA
Ga0182028_10133552	3300019788	Fen	MSKVALTRTNLLLEATKVRRLRKALQSRSNSEAVRRIIDERLAVEAGLQ
Ga0179592_100127988	3300020199	Vadose Zone Soil	MGRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVI
Ga0210407_105276842	3300020579	Soil	MSRALTRTNLLLESGKVQQLRKTLHSRSNSEAVRRVIEERLAVEA
Ga0215015_106777061	3300021046	Soil	MSRAPLTRTNLLLEVGKVRRLRNALQSRSNSEAVRRVIDERLAVETGLEALRS
Ga0210406_112056491	3300021168	Soil	MSRALTRTNLLLESGKVQQLRKTLHSRSNSEAVRRVIE
Ga0210400_107392051	3300021170	Soil	MSRALTRTNLLLESGKVQQLRKTLHSRSNSEAVRRVIEERL
Ga0210393_107045142	3300021401	Soil	MSKAALTRTNLLLETGKIRRLRKALQSRSNSEAVRRAVDERLAVET
Ga0210393_110144752	3300021401	Soil	MSRALTRTNLLLESGKVQQLRKALHSRSNSEAVRRVIEERL
Ga0210387_104347392	3300021405	Soil	MGRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLVV
Ga0210383_100385711	3300021407	Soil	MSKAALTRTNLLLETGKIRRLRKALQSRSNSEAVRRAVDERLAVETGLAALRNLRK
Ga0224558_11133851	3300023090	Soil	MQKLALKRTNLLLETAKVRRLRETLGSPSNSDAVRRAINERLAVESGLRAL
Ga0208689_10534721	3300025459	Peatland	MSKVALTRTNLLLETTKVRRLRKALGSPSNSEAVRRVINERLAVEAGLQALLDLR
Ga0207646_107239582	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSRASLTRTNLLLEGGKVRRLRNALQSRSNSEAVRRVIDER
Ga0207665_110554491	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSRALTRTNLLLESGKIQQLRKTLHSRSNSEAVLR
Ga0209238_11653722	3300026301	Grasslands Soil	MSRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVEAGLQALQDL
Ga0209238_11944281	3300026301	Grasslands Soil	MSGPALTRTNLLLETGKVRRLRRALQSRSNSEAVRRVIDERLAAEA
Ga0209471_10734221	3300026318	Soil	MSRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRV
Ga0209131_12607731	3300026320	Grasslands Soil	MGRRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVEAGLQ
Ga0209472_11805432	3300026323	Soil	MSRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRLVIDERLAVEAGL
Ga0209375_12466821	3300026329	Soil	MSRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRLVIDERLAVEAGLQALQ
Ga0257172_10436502	3300026482	Soil	MSRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVEAGLQALQDLRKL
Ga0257165_10984061	3300026507	Soil	MGRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVEAGLQALQD
Ga0209161_101859701	3300026548	Soil	MSRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRLVIDERL
Ga0209648_102290681	3300026551	Grasslands Soil	MGRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRRNRRAPGGG
Ga0179587_100110721	3300026557	Vadose Zone Soil	MSRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVE
Ga0179587_104052971	3300026557	Vadose Zone Soil	MGRALTRTNLLLESGKVQQLRKTLHSRSNSEAVRRVIEERLAV
Ga0208097_10366562	3300027173	Forest Soil	MSRAALTRTNLLLETGKVRQLREALRSRSNSEAVRLVIDERLAVEAG
Ga0209117_10434142	3300027645	Forest Soil	MSGAALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVEAGLQALQDLRKLG
Ga0137415_101012607	3300028536	Vadose Zone Soil	MGRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVEAGLQALQDLRKL
Ga0265338_112234481	3300028800	Rhizosphere	MSRAPLTRTNLLLETEKVRRLRRTLRSRSNSEAVRLVINERLAAEAG
Ga0222749_102416001	3300029636	Soil	TRTNLLLESRKVQQLRKTLHSRSNSEAVRRVIEERLAVEAGLGALRTLGS
Ga0073994_100727031	3300030991	Soil	MSRTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAVEAGL
Ga0307476_101361211	3300031715	Hardwood Forest Soil	MSRALTRTNLLLESGKVQQLRKTLLSRSNSEAVRPVIEEQLALEA
Ga0307478_100308905	3300031823	Hardwood Forest Soil	MARTALTRTNLLLETGKVRRLRKALQSRSNSEAVRRVIDERLAIE
Ga0307478_106428261	3300031823	Hardwood Forest Soil	MSRALTRTNLLLESGKVQQLRKALHSRSNSEAVRRVIDERLAVEAGLAALRALRE
Ga0335078_108789693	3300032805	Soil	MHKPALKRTNLLLETAKVRRLRETLGSPSNSDAVRRAIDE
Ga0335077_114756012	3300033158	Soil	MSGAGLTRTNLLLETEKIRRLRKALRSRSNSEAVRRVIEERLAVETGLGAL
Ga0335077_119034021	3300033158	Soil	MSHAALTRTNLLLETGKVRRLRRALQSKSNSEAVRRVIEERLTVE
Ga0326728_105256231	3300033402	Peat Soil	MSNVALTRTNLLLETAKVRRLRKALGSPSNSEAVRRAI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094465

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences