Metagenome / Metatranscriptome Family F094455

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094455
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	59 residues
Representative Sequence	MYNVTEFPVDRLSDRELRIREWEVVMAGGYGSNEHKRLQSEMWRRTSNDYAPAQPHTTH
Number of Associated Samples	79
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	46.23 %
% of genes near scaffold ends (potentially truncated)	30.19 %
% of genes from short scaffolds (< 2000 bps)	77.36 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.321 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (13.207 % of family members)
Environment Ontology (ENVO)	Unclassified (57.547 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.925 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 37.93% β-sheet: 0.00% Coil/Unstructured: 62.07%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13590	DUF4136	9.43
PF09242	FCSD-flav_bind	6.60
PF13349	DUF4097	3.77
PF13345	Obsolete Pfam Family	1.89
PF00491	Arginase	1.89
PF13579	Glyco_trans_4_4	0.94
PF00753	Lactamase_B	0.94
PF00892	EamA	0.94
PF00005	ABC_tran	0.94
PF13439	Glyco_transf_4	0.94
PF06537	DHOR	0.94
PF01545	Cation_efflux	0.94
PF06089	Asparaginase_II	0.94
PF01963	TraB_PrgY_gumN	0.94
PF13480	Acetyltransf_6	0.94
PF05649	Peptidase_M13_N	0.94
PF13478	XdhC_C	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	1.89
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.94
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.94
COG1916	Pheromone shutdown protein TraB, contains GTxH motif (function unknown)	Function unknown [S]	0.94
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.94
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.94
COG4448	L-asparaginase II	Amino acid transport and metabolism [E]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
All Organisms	root	All Organisms	38.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
cellular organisms	root	All Organisms → cellular organisms	38.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	24.53 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	15.09 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	1.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	6.60 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	1.89 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	0.94 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Dokdonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella	5.66 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.94 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	0.94 %
unclassified Xanthomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Dokdonella fugitiva	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	5.66 %
Xanthomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	0.94 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.94 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005327\|Ga0070658_11655804	Not Available	554	Open in IMG/M
3300005328\|Ga0070676_10296515	Not Available	1094	Open in IMG/M
3300005329\|Ga0070683_100247947	All Organisms → cellular organisms → Bacteria → Proteobacteria	1694	Open in IMG/M
3300005329\|Ga0070683_101576782	Not Available	631	Open in IMG/M
3300005334\|Ga0068869_100103593	All Organisms → cellular organisms → Bacteria → Proteobacteria	2156	Open in IMG/M
3300005337\|Ga0070682_100354474	Not Available	1095	Open in IMG/M
3300005337\|Ga0070682_100905433	Not Available	725	Open in IMG/M
3300005344\|Ga0070661_100026415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4176	Open in IMG/M
3300005344\|Ga0070661_101129189	Not Available	654	Open in IMG/M
3300005347\|Ga0070668_100086801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	2461	Open in IMG/M
3300005367\|Ga0070667_100019038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	5692	Open in IMG/M
3300005367\|Ga0070667_100084560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2720	Open in IMG/M
3300005436\|Ga0070713_102027688	Not Available	558	Open in IMG/M
3300005439\|Ga0070711_100579732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	934	Open in IMG/M
3300005455\|Ga0070663_100378724	Not Available	1152	Open in IMG/M
3300005539\|Ga0068853_100076525	All Organisms → cellular organisms → Bacteria → Proteobacteria	2922	Open in IMG/M
3300005546\|Ga0070696_101880784	Not Available	518	Open in IMG/M
3300005547\|Ga0070693_100641176	Not Available	771	Open in IMG/M
3300005548\|Ga0070665_100051048	All Organisms → cellular organisms → Bacteria → Proteobacteria	4149	Open in IMG/M
3300005548\|Ga0070665_100211584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	1940	Open in IMG/M
3300005548\|Ga0070665_100590598	Not Available	1123	Open in IMG/M
3300005563\|Ga0068855_100806453	Not Available	997	Open in IMG/M
3300005578\|Ga0068854_100097984	All Organisms → cellular organisms → Bacteria	2193	Open in IMG/M
3300005578\|Ga0068854_100361218	All Organisms → cellular organisms → Bacteria → Proteobacteria	1191	Open in IMG/M
3300005617\|Ga0068859_101345664	Not Available	787	Open in IMG/M
3300005617\|Ga0068859_101436832	Not Available	761	Open in IMG/M
3300005719\|Ga0068861_102609330	Not Available	509	Open in IMG/M
3300005844\|Ga0068862_100730698	Not Available	961	Open in IMG/M
3300005983\|Ga0081540_1000744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	29964	Open in IMG/M
3300006163\|Ga0070715_10412683	Not Available	753	Open in IMG/M
3300006237\|Ga0097621_101775799	Not Available	588	Open in IMG/M
3300006581\|Ga0074048_12066903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	547	Open in IMG/M
3300006755\|Ga0079222_10068517	All Organisms → cellular organisms → Bacteria	1734	Open in IMG/M
3300006804\|Ga0079221_10465326	Not Available	808	Open in IMG/M
3300006954\|Ga0079219_12333134	Not Available	518	Open in IMG/M
3300009100\|Ga0075418_12739396	Not Available	538	Open in IMG/M
3300009101\|Ga0105247_10565061	Not Available	838	Open in IMG/M
3300009174\|Ga0105241_10114238	All Organisms → cellular organisms → Bacteria → Proteobacteria	2166	Open in IMG/M
3300009174\|Ga0105241_11913050	Not Available	582	Open in IMG/M
3300009870\|Ga0131092_10537023	Not Available	1040	Open in IMG/M
3300010358\|Ga0126370_11849174	Not Available	586	Open in IMG/M
3300010359\|Ga0126376_11053678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	818	Open in IMG/M
3300010360\|Ga0126372_12984252	Not Available	525	Open in IMG/M
3300010362\|Ga0126377_10400889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	1382	Open in IMG/M
3300010371\|Ga0134125_12203686	Not Available	599	Open in IMG/M
3300010375\|Ga0105239_13311309	Not Available	524	Open in IMG/M
3300012212\|Ga0150985_100238069	Not Available	1026	Open in IMG/M
3300012212\|Ga0150985_101826044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1728	Open in IMG/M
3300012212\|Ga0150985_107020204	Not Available	999	Open in IMG/M
3300012212\|Ga0150985_107077069	Not Available	635	Open in IMG/M
3300012212\|Ga0150985_107856530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	819	Open in IMG/M
3300012212\|Ga0150985_117333086	Not Available	627	Open in IMG/M
3300012212\|Ga0150985_121248486	Not Available	519	Open in IMG/M
3300012469\|Ga0150984_106117849	Not Available	537	Open in IMG/M
3300012943\|Ga0164241_11003306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	612	Open in IMG/M
3300012960\|Ga0164301_11043524	Not Available	646	Open in IMG/M
3300013057\|Ga0164272_135166	Not Available	502	Open in IMG/M
3300013297\|Ga0157378_13093293	Not Available	516	Open in IMG/M
3300013308\|Ga0157375_10746503	Not Available	1130	Open in IMG/M
3300014745\|Ga0157377_10480562	Not Available	864	Open in IMG/M
3300015374\|Ga0132255_104164392	Not Available	613	Open in IMG/M
3300017792\|Ga0163161_11364540	Not Available	618	Open in IMG/M
3300017947\|Ga0187785_10119473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	1076	Open in IMG/M
3300018476\|Ga0190274_10295844	Not Available	1503	Open in IMG/M
3300018476\|Ga0190274_11838496	Not Available	701	Open in IMG/M
3300019889\|Ga0193743_1225310	Not Available	570	Open in IMG/M
3300020021\|Ga0193726_1012641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4486	Open in IMG/M
3300020027\|Ga0193752_1027640	All Organisms → cellular organisms → Bacteria	2626	Open in IMG/M
3300020027\|Ga0193752_1067464	Not Available	1517	Open in IMG/M
3300020060\|Ga0193717_1001135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	16634	Open in IMG/M
3300020060\|Ga0193717_1006613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	5992	Open in IMG/M
3300020060\|Ga0193717_1054304	Not Available	1403	Open in IMG/M
3300020060\|Ga0193717_1152948	Not Available	676	Open in IMG/M
3300020061\|Ga0193716_1000996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	16814	Open in IMG/M
3300020070\|Ga0206356_11498159	Not Available	729	Open in IMG/M
3300020593\|Ga0180221_1005774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5737	Open in IMG/M
3300022897\|Ga0247764_1065609	Not Available	1124	Open in IMG/M
3300022897\|Ga0247764_1086205	Not Available	964	Open in IMG/M
3300022910\|Ga0247768_1062142	Not Available	1161	Open in IMG/M
3300022910\|Ga0247768_1182909	Not Available	635	Open in IMG/M
3300025321\|Ga0207656_10020955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	2605	Open in IMG/M
3300025878\|Ga0209584_10281589	Not Available	638	Open in IMG/M
3300025901\|Ga0207688_10659716	Not Available	661	Open in IMG/M
3300025903\|Ga0207680_10038870	All Organisms → cellular organisms → Bacteria → Proteobacteria	2757	Open in IMG/M
3300025907\|Ga0207645_10902420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300025911\|Ga0207654_10136371	Not Available	1559	Open in IMG/M
3300025911\|Ga0207654_10993801	Not Available	610	Open in IMG/M
3300025913\|Ga0207695_11034166	Not Available	701	Open in IMG/M
3300025914\|Ga0207671_10094947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	2251	Open in IMG/M
3300025920\|Ga0207649_10037415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	2931	Open in IMG/M
3300025921\|Ga0207652_11901423	Not Available	501	Open in IMG/M
3300025949\|Ga0207667_10146903	All Organisms → cellular organisms → Bacteria → Proteobacteria	2427	Open in IMG/M
3300025981\|Ga0207640_11673428	Not Available	574	Open in IMG/M
3300026041\|Ga0207639_11229097	Not Available	703	Open in IMG/M
3300026067\|Ga0207678_10001420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	21958	Open in IMG/M
3300026095\|Ga0207676_12563954	Not Available	506	Open in IMG/M
3300028379\|Ga0268266_10000001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	4040580	Open in IMG/M
3300028379\|Ga0268266_10197877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	1838	Open in IMG/M
3300028379\|Ga0268266_10483389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1181	Open in IMG/M
3300028379\|Ga0268266_10574658	Not Available	1081	Open in IMG/M
3300028380\|Ga0268265_10337690	All Organisms → cellular organisms → Bacteria → Proteobacteria	1371	Open in IMG/M
3300031730\|Ga0307516_10716954	Not Available	658	Open in IMG/M
3300031996\|Ga0308176_12278324	Not Available	578	Open in IMG/M
3300032782\|Ga0335082_10149561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	2263	Open in IMG/M
3300032782\|Ga0335082_10923428	Not Available	736	Open in IMG/M
3300032955\|Ga0335076_11109640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dokdonella → Dokdonella fugitiva	674	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	56.60%
Environmental	Environmental	42.45%
Engineered	Engineered	0.94%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	56.60%
Terrestrial	Environmental → Terrestrial	42.45%
Wastewater	Engineered → Wastewater	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	38.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	24.53%
Plant Litter	Environmental → Terrestrial → Plant Litter	3.77%
Roots	Host-Associated → Plants → Roots	1.89%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.47%
Soil	Host-Associated → Plants → Rhizosphere → Soil	18.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.32%
Loam	Environmental → Terrestrial → Soil → Loam	9.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.55%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.77%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	3.77%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.94%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	18.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.55%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.77%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	3.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.94%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.21%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	10.38%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	7.55%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	6.60%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	6.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.66%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.66%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.77%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	3.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Compost	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.94%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.94%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013057	Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - RNA 3rd pass 37_C Kraft MG (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020027	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020593	Enriched Miracle-Growth compost microbial communities from Emeryville, California, USA - eDNA 5th pass 37_C Kraft MG (version 2)	Environmental	Open in IMG/M
3300022897	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L051-202B-4	Environmental	Open in IMG/M
3300022910	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L016-104C-6	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025878	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070658_116558042	3300005327	Corn Rhizosphere	MYNVTEFPVDRLSDRELHLREWECVMAGGYGSTEHKRLQNEMWRRTSNDYAPAQPHTTH*
Ga0070676_102965152	3300005328	Miscanthus Rhizosphere	MYNVTEFPVDRLSDRELRLREWEVVMSGGYGSNEHKRLQSELWRRTSNTYASAQPRMAH*
Ga0070683_1002479473	3300005329	Corn Rhizosphere	MLNVTEFPVDRLSDRELRIQEWECVMAGGYGSNAHKRLQAEIWRRTSNVYEPSAPVTTH*
Ga0070683_1015767822	3300005329	Corn Rhizosphere	RIGHAVMLNVTEFPVDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNMYIPSAPVTTH*
Ga0068869_1001035934	3300005334	Miscanthus Rhizosphere	MYNITEFPVDRLSDRELRIREWEVVMSGGYGSKEHKRLQNEMWRRTSNMYAAQPFTTH*
Ga0070682_1003544741	3300005337	Corn Rhizosphere	MYNVTEFPVDRLSDRELRIREWEVVMAGGYGSNEHKRLQSELWRRTSNDYAPAHTTH*
Ga0070682_1009054331	3300005337	Corn Rhizosphere	MLNVTEFPVDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNMYIPSAPVTTH*
Ga0070661_1000264155	3300005344	Corn Rhizosphere	MLDYRQRKRRIGHAVMLNVTEFPVDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNMYIPSAPVTTH*
Ga0070661_1011291891	3300005344	Corn Rhizosphere	MLNVTEFPIDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNM
Ga0070668_1000868012	3300005347	Switchgrass Rhizosphere	MYNVTEFPVDRLSDRELRLREWEVVMSGGYGSNEHKRLQSELWRRTSNTYASAQPRMTH*
Ga0070667_1000190388	3300005367	Switchgrass Rhizosphere	MYNVTEFPVDNLSDRELRIREWEVVMAGGYGSNEHKRLQNELWRRTSNFYAPARPMTH*
Ga0070667_1000845601	3300005367	Switchgrass Rhizosphere	MYNVTEFPIDRLSDRELHLREWEVVMAGGYGSNEHKRLKSEMWRRTSNTYAPARPMTH*
Ga0070713_1020276882	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLNVTEFPVDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNMYAPS
Ga0070711_1005797322	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MYNNVSEFPVDHLSDRELRLREWEVVMAGGYGSSEHKRLQNEMWRRTSNMYAPAQARTH*
Ga0070663_1003787241	3300005455	Corn Rhizosphere	MLNVTEFPVDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNMYVPSAPITTH*
Ga0068853_1000765251	3300005539	Corn Rhizosphere	LNVTEFPVDRLSDRELRIQEWECVMAGGYGSNAHKRLQAEIWRRTSNVYEPSAPVTTH*
Ga0070696_1018807841	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	AVMLNVTEFPVDRLSDRELRIQEWECVMAGGYGSNAHKRLQAEIWRRTSNMYVPSAPVTTH*
Ga0070693_1006411762	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MYNVTEFPVDRLSDRELRIREWEVVMSGGYGSKEHKRLQNEMWRRTSNMYAAPAFTTH*
Ga0070665_1000510482	3300005548	Switchgrass Rhizosphere	MNNISEFPIDRLSDRELRIREWEVVMSGGYGSNEHKRLQSEMWRRTSNMYVPQPHTTH*
Ga0070665_1002115842	3300005548	Switchgrass Rhizosphere	MYNVTEFPIDRLSDRELHLREWEVVMAGGYGSNEHKRLKNEMWRRTSNTYAPARPMTH*
Ga0070665_1005905982	3300005548	Switchgrass Rhizosphere	MYNVTEFPVDRLSDRELHIREWEVVMAGGYGSNEHKRLQSEMWRRTSNDYAPSQPHTTH*
Ga0068855_1008064531	3300005563	Corn Rhizosphere	MLDYRQRKRRIGHAVMLNVTEFPVDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNM
Ga0068854_1000979844	3300005578	Corn Rhizosphere	MLNVTEFPVDRLSDRELRIQEWECVMAGGYGSNAHKRLRPIWRRTSNVYEPSAPVTTH*
Ga0068854_1003612183	3300005578	Corn Rhizosphere	KRSAAMYNNVSEFPVDHLSDRELRLREWEVVMAGGYGSSEHKRLQNEMWRRTSNMYAPAQARITH*
Ga0068859_1013456642	3300005617	Switchgrass Rhizosphere	MLNVTEFPVDRLSDRELRIQEWECVMAGGYGSNAHKRLQAEIWRRTSNVYEPSARVTTH*
Ga0068859_1014368321	3300005617	Switchgrass Rhizosphere	EFPVDRLSDRELHLREWECVMAGGYGSTEHKRLQNEMWRRTSNDYAPAQPHTTH*
Ga0068861_1026093301	3300005719	Switchgrass Rhizosphere	QYASSQLHPSRSAAMSNIAEFPVDRLSDRELRLREWECVMSGGYGTNEHKRLQSEMWRRTSNMYAPAQRVTH*
Ga0068862_1007306981	3300005844	Switchgrass Rhizosphere	GHAVMYNVTEFPVDRLSDRELHLREWECVMAGGYGSTEHKRLQNEMWRRTSNDYAPAQPHTTH*
Ga0081540_10007447	3300005983	Tabebuia Heterophylla Rhizosphere	MYNVTEFPIDRLSDRELRLREWECVMAGGYGSSEHKRLQSEMWRRTSNHYVPAAITTH*
Ga0070715_104126832	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MLNVTEFPVDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNMYMPSAPVTTH*
Ga0097621_1017757992	3300006237	Miscanthus Rhizosphere	MYNVTEFPVDRLSDRELRIREWEVVMSGGYGSKEHKRLQNEMWRRTSNMYAAQPFTTH*
Ga0074048_120669031	3300006581	Soil	MYNITEFPVDRLSDRELRIREWEVVMSGGYGSNEHKRLQNELWRRTSNMYEPAYTTH*
Ga0079222_100685173	3300006755	Agricultural Soil	MMNVTEFPIDRLSDRELRIREWECVMAGGYGSNEHKRLQGEIWRRTSNMYLPSAPITTH*
Ga0079221_104653261	3300006804	Agricultural Soil	MLNVTEFPVDRLSDRELRIREWECVMAGGYGSNEHKRLQGEIWRRTSNMYLPSAPITTH*
Ga0079219_123331341	3300006954	Agricultural Soil	MYNVTEFPVDRLSDRELRIREWEVVMAGGYGSNEHKRLQSELWRRTSNDYAPAQTTH*
Ga0075418_127393961	3300009100	Populus Rhizosphere	MYNVTEFPVDRLSDRELRLREWECVMSGGYGSSEHKRLQSEMWRRTSNMYAPAQRVTH*
Ga0105247_105650612	3300009101	Switchgrass Rhizosphere	MLNVTEFPVDRLSDRELRIQEWECVMAGGYGSNAHKRLQAEIWRRTSNMYEPSAPVTTH*
Ga0105241_101142383	3300009174	Corn Rhizosphere	MLNVTEFPIDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNMYVPSAPITTH*
Ga0105241_119130502	3300009174	Corn Rhizosphere	MLNVTEFPVDRLSDRELRIQEWECVMAGGYGSNAHKRLQAEIWRRTSNMYVPSAPVTTH*
Ga0131092_105370231	3300009870	Activated Sludge	MLKVTEFPVDRLSDRELRIREWECVMAGGYGSNEHKRLQGEIWRRSSNMYEPSAPVTTH*
Ga0126370_118491741	3300010358	Tropical Forest Soil	MYNITEFPIDRLSDRELRLREWEVVMSGGYGSSEHKRLQNEMWRRTSNMYVPAAPYTTH*
Ga0126376_110536781	3300010359	Tropical Forest Soil	MYNITEFPIDRLSDRELRLREWEVVMSGGYGSSEHKRLQNEMWRRTSNMYVPATPYTTH*
Ga0126372_129842522	3300010360	Tropical Forest Soil	MLNVTEFPVDRLSDRELRIREWECVMAGGYGSNEHKRLQGEIWRRTSNMYVPSAPITTH*
Ga0126377_104008892	3300010362	Tropical Forest Soil	MYNITEFPIDRLSDRELRLREWECVMAGGYGSSEHKRLQSEMWRRTSNHYVPAAAITTH*
Ga0134125_122036862	3300010371	Terrestrial Soil	MLNITEFPVDRLSDHELRIREWECVMSGGYGTNDHKRLQGEIWRRSSNTYAASAPVTTH*
Ga0105239_133113091	3300010375	Corn Rhizosphere	AVMYNVTEFPVDRLSDRELHLREWECVMAGGYGSTEHKRLQNEMWRRTSNDYAPAQPHTTH*
Ga0150985_1002380693	3300012212	Avena Fatua Rhizosphere	MPNVTEFPVDRLSDRELRIQEWECVMAGGYGSHEHKRLQGEIWRRTSNMYVPSAPVTTH*
Ga0150985_1018260443	3300012212	Avena Fatua Rhizosphere	MYNVTDFPVDHLSDRELHIREWEVVMSGGYGSNEHKRLQSEMWRRTSNTYASAEAHTTH*
Ga0150985_1070202043	3300012212	Avena Fatua Rhizosphere	RRAAMYNVTEFPVDGLSDRELHIREWEVVMSGGYGSNEHKRLQSEMWRRTSNVYASATPHTTH*
Ga0150985_1070770691	3300012212	Avena Fatua Rhizosphere	GSAVMMNVTEFPVDRLSDRELRIREWECVMAGGYGSHEHKRLQGEIWRRTSNMYVPSAPVTTH*
Ga0150985_1078565302	3300012212	Avena Fatua Rhizosphere	MYNVTEFPVDRLSDRELHLREWECVMAGGYGSNEHKRLQNEMWRRTSNDYAPAQPHTTH*
Ga0150985_1173330861	3300012212	Avena Fatua Rhizosphere	PGHAVMYNVTEFPVDRLSDRELHLREWECVMAGGYGSKEHKRLQNEMWRRTSNDYAPAQPHTTH*
Ga0150985_1212484861	3300012212	Avena Fatua Rhizosphere	TTGSAVMMNVTEFPVDRLSDRELRIREWECVMAGGYGSHEHKRLQGEIWRRTSNVYEPSAPVTTH*
Ga0150984_1061178492	3300012469	Avena Fatua Rhizosphere	MYVTEFPVDGLSDRELHIREWEVVMSGGYGSNEHKRLQSEMWRRTSNVYASATPHTTH*
Ga0164241_110033061	3300012943	Soil	NRISDRELRIREWECVMSGGYGTHEHKRLQGEIWRRSSNMYVPSAPVTTH*
Ga0164301_110435241	3300012960	Soil	MLNVTEFPVDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNMYAPSAPITTH*
Ga0164272_1351662	3300013057	Soil	MYNVTEFPIDRLSDRELRIREWEVVMSGGYGSSEHKRLQSEIRRRTVNLYAAAQPYTTH*
Ga0157378_130932931	3300013297	Miscanthus Rhizosphere	MLNVTEFPIDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNMYMPSAPVTTH*
Ga0157375_107465031	3300013308	Miscanthus Rhizosphere	VTEFPVDRLSDRELRIQEWECVMAGGYGSNAHKRLQAEIWRRTSNVYEPSAPVTTH*
Ga0157377_104805622	3300014745	Miscanthus Rhizosphere	PVDRLSDRELRLREWEVVMSGGYGSNEHKRLQSELWRRTSNTYASAQPRMAH*
Ga0132255_1041643923	3300015374	Arabidopsis Rhizosphere	MYNVTEFPVDRLSDRELHLREWECVMAGGYGSNEHKRLQSELWRRTSNDYA
Ga0163161_113645401	3300017792	Switchgrass Rhizosphere	MYNITEFPVDRLSDRELRIREWEVVMSGGYGSKEHKRLQNEMWRRTSNMYAAQPFTTH
Ga0187785_101194733	3300017947	Tropical Peatland	MYNVTEFPIDRLSDRELRLREWEVVMSGGYGSSEHKRLQNEMWRRTSNMYVPASPYTTH
Ga0190274_102958442	3300018476	Soil	MSNIAEFPVDRLSDRELRLREWECVMSGGYGTNEHKRLQSEMWRRTSNMYAPAQRVTH
Ga0190274_118384963	3300018476	Soil	MYNISEFPVDHLSDRELHIREWEVVMAGGYGSNEHKRLQSEMWRRTSNTYAPEQSRTTH
Ga0193743_12253101	3300019889	Soil	RLSDRELRIREWEVVMAGGYGSSEHKRLQSELWRRTSNEYTPACPGTMH
Ga0193726_10126415	3300020021	Soil	MYNISEFPVDHLSDRELHIREWEVVMAGGYGSNEHKRLQSEMWRRTSNTYAPEHSHTTH
Ga0193752_10276403	3300020027	Soil	MYNISEFPVDHLSDRELHIREWEVVMAGGYGSNEHKRLQSEMWRRTSNTYAPEAHTTH
Ga0193752_10674641	3300020027	Soil	MFNISEFPVDHLSDRELHIREWEVVMSGGYGSNEHKRLQSEMWRRTSNTYASQAHTTH
Ga0193717_100113514	3300020060	Soil	MYNVTEFPVDRLSDRELRIREWEVVMAGGYGSSEHKRLQSELWRRTSNEYTPACPGTMH
Ga0193717_10066136	3300020060	Soil	MLCVRQPDRKDPAAMYNVTEFPVDRLSDRELRIREWEVVMAGGYGSSEHKRLQSELWRRTSNEYAPARPGTMH
Ga0193717_10543043	3300020060	Soil	MYNVTEFPVDRLSDRELRLREWECVMSGGYGTNEHKRLQSEMWRRTSNTYASAQPRMTH
Ga0193717_11529482	3300020060	Soil	MYNISEFPVDNLSDRELHIREWEVVMAGGYGSNEHKRLQSEMWRRTSNTYASQAHTTH
Ga0193716_10009965	3300020061	Soil	MYNVTEFPVDRLSDRELRIREWEVVMAGGYGSSEHKRLQSELWRRTSNEYAPARPGTMH
Ga0206356_114981591	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	KRRIGHAVMLNVTEFPVDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNMYIPSAPVTTH
Ga0180221_10057746	3300020593	Compost	MYNVTEFPIDRLSDRELRIREWEVVMSGGYGSSEHKRLQSEIRRRTVNLYAAAQPYTTH
Ga0247764_10656093	3300022897	Plant Litter	MYNVTEFPVDRLSDRELRIREWEVVMAGGYGSNEHKRLQSELWRRTSNDYAPSHPHTTH
Ga0247764_10862052	3300022897	Plant Litter	MYNVTEFPVDRLSDRELHIREWEVVMAGGYGSNEHKRLQSEMWRRTSNDYAPSQPHTTH
Ga0247768_10621423	3300022910	Plant Litter	MHNVTEFPVDHLSERELRLREWEVVMAGGYGSSEHKRLQRELWHRTSNLYAPARQVTTH
Ga0247768_11829092	3300022910	Plant Litter	MYNVTEFPVDRLSDRELHIREWEVVMAGGYGSNEHKRLQSEMWRRTSNNYAPSQPHTTH
Ga0207656_100209551	3300025321	Corn Rhizosphere	MYNVTEFPIDRLSDRELHLREWEVVMAGGYGSNEHKRLKSEMWRRTSNTYAPARPMTH
Ga0209584_102815892	3300025878	Arctic Peat Soil	MYNNVSEFPIDGLSDRELHLREWEVVMSGGYGSSEHKRLQNELWRRTSNMYAPAQACATH
Ga0207688_106597162	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MYNVTEFPVDRLSDRELRLREWEVVMSGGYGSNEHKRLQSELWRRTSNTYASAQPRMTH
Ga0207680_100388705	3300025903	Switchgrass Rhizosphere	MYNVTEFPVDRLSDRELHLREWECVMAGGYGSTEHKRLQNEMWRRTSNDYAPAQPHTTH
Ga0207645_109024201	3300025907	Miscanthus Rhizosphere	MYNVTEFPVDRLSDRELRIREWEVVMAGGYGSNEHKRLQSELWRRTSNDYAP
Ga0207654_101363713	3300025911	Corn Rhizosphere	MLNVTEFPVDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNMYVPSAPITTH
Ga0207654_109938012	3300025911	Corn Rhizosphere	MLNVTEFPVDRLSDRELRIQEWECVMAGGYGSNAHKRLQAEIWRRTSNMYVPSAPVTTH
Ga0207695_110341662	3300025913	Corn Rhizosphere	MLNVTEFPIDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNMYIPSAPVTTH
Ga0207671_100949472	3300025914	Corn Rhizosphere	MYNVTEFPIDRLSDRELHLREWEVVMAGGYGSNEHKRLKSEMWPRTSNTYAPARPMTH
Ga0207649_100374155	3300025920	Corn Rhizosphere	MLNVTEFPVDRLSDRELRIQEWECVMAGGYGSNAHKRLQAEIWRRTSNVYE
Ga0207652_119014231	3300025921	Corn Rhizosphere	MYNVTEFPVDRLSDRELRIREWEVVMAGGYGSNEHKRLQSEMWRRTSNDYAPAQPHTTH
Ga0207667_101469031	3300025949	Corn Rhizosphere	MLNVTEFPVDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNM
Ga0207640_116734281	3300025981	Corn Rhizosphere	TRVGSSAMYNITEFPVDRLSDRELRIREWEVVMSGGYGSKEHKRLQNEMWRRTSNMYAPAQARITH
Ga0207639_112290972	3300026041	Corn Rhizosphere	DRLSDRELRIQEWECVMAGGYGSNAHKRLQAEIWRRTSNMYVPSAPVTTH
Ga0207678_1000142018	3300026067	Corn Rhizosphere	MYNVTEFPVDRLSDRELRIREWEVVMAGGYGSNEHKRLQSELWRRTSNDYAPAHTTH
Ga0207676_125639542	3300026095	Switchgrass Rhizosphere	GPAVMLNVTEFPVDRLSDRELRIQEWECVMAGGYGSNAHKRLQAEIWRRTSNVYEPSAPVTTH
Ga0268266_100000013459	3300028379	Switchgrass Rhizosphere	MYNVTEFPVDNLSDRELRIREWEVVMAGGYGSNEHKRLQNELWRRTSNFYAPARPMTH
Ga0268266_101978772	3300028379	Switchgrass Rhizosphere	MYNVTEFPIDRLSDRELHLREWEVVMAGGYGSNEHKRLKNEMWRRTSNTYAPARPMTH
Ga0268266_104833892	3300028379	Switchgrass Rhizosphere	MYNVTEFPVDRLSDRELRLREWEVVMSGGYGSNEHKRLQSELWRRTSNTYASAQPRMAH
Ga0268266_105746583	3300028379	Switchgrass Rhizosphere	MNNISEFPIDRLSDRELRIREWEVVMSGGYGSNEHKRLQSEMWRRTSNMYVPQPHTTH
Ga0268265_103376903	3300028380	Switchgrass Rhizosphere	PGHAVMYNVTEFPVDRLSDRELHLREWECVMAGGYGSTEHKRLQNEMWRRTSNDYAPAQPHTTH
Ga0307516_107169542	3300031730	Ectomycorrhiza	MLNVTEFPVDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNMYSPSAPITTH
Ga0308176_122783241	3300031996	Soil	MPNVTEFPVDRLSDRELRIQEWECVMAGGYGSHEHKRLQGEIWRRTSNMYVPSAPVTTH
Ga0335082_101495612	3300032782	Soil	MYNVTEFPIDRLSDRELRLREWEVVMSGGYGSSEHKRLQNEMWRRTSNMYAPASPYTTH
Ga0335082_109234282	3300032782	Soil	YRKSRTGHAVMLNVTEFPIDRLSDRELRIREWECVMSGGYGTNEHKRLQGEIWRRSSNMYVPSAPITTH
Ga0335076_111096403	3300032955	Soil	MYNVTEFPIDRLSDRELRLREWEVVMSGGYGSSEHKRLQNEMWRRTSNMYAVAAPYTTH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094455

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences