NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F094407

Metagenome Family F094407

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F094407
Family Type Metagenome
Number of Sequences 106
Average Sequence Length 53 residues
Representative Sequence MIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIK
Number of Associated Samples 65
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 77.36 %
% of genes near scaffold ends (potentially truncated) 42.45 %
% of genes from short scaffolds (< 2000 bps) 88.68 %
Associated GOLD sequencing projects 54
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (58.491 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(72.642 % of family members)
Environment Ontology (ENVO) Unclassified
(89.623 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(72.642 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 11.11%    β-sheet: 29.63%    Coil/Unstructured: 59.26%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF06067DUF932 4.72
PF11259DUF3060 0.94



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A58.49 %
All OrganismsrootAll Organisms41.51 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000158|SI54feb11_100mDRAFT_c1036054Not Available728Open in IMG/M
3300002760|JGI25136J39404_1060582All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium704Open in IMG/M
3300003540|FS896DNA_10906700Not Available946Open in IMG/M
3300004460|Ga0066222_1481311All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium588Open in IMG/M
3300004461|Ga0066223_1443988All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium683Open in IMG/M
3300006164|Ga0075441_10060636All Organisms → Viruses → Predicted Viral1485Open in IMG/M
3300006164|Ga0075441_10117014All Organisms → Viruses → Predicted Viral1017Open in IMG/M
3300006164|Ga0075441_10128071Not Available964Open in IMG/M
3300006738|Ga0098035_1246071Not Available589Open in IMG/M
3300006754|Ga0098044_1065784Not Available1522Open in IMG/M
3300006754|Ga0098044_1202130Not Available781Open in IMG/M
3300006789|Ga0098054_1109407All Organisms → Viruses → Predicted Viral1032Open in IMG/M
3300006789|Ga0098054_1368440Not Available507Open in IMG/M
3300006902|Ga0066372_10207708All Organisms → Viruses → Predicted Viral1074Open in IMG/M
3300006921|Ga0098060_1101566All Organisms → cellular organisms → Bacteria814Open in IMG/M
3300006928|Ga0098041_1061731Not Available1210Open in IMG/M
3300006929|Ga0098036_1173515Not Available657Open in IMG/M
3300006947|Ga0075444_10049017Not Available2007Open in IMG/M
3300007963|Ga0110931_1049916All Organisms → Viruses → Predicted Viral1263Open in IMG/M
3300007963|Ga0110931_1058652All Organisms → Viruses → Predicted Viral1162Open in IMG/M
3300007963|Ga0110931_1060886Not Available1139Open in IMG/M
3300007963|Ga0110931_1124979Not Available774Open in IMG/M
3300007963|Ga0110931_1140600All Organisms → cellular organisms → Bacteria725Open in IMG/M
3300009173|Ga0114996_10409033All Organisms → Viruses → Predicted Viral1039Open in IMG/M
3300009173|Ga0114996_10602550Not Available816Open in IMG/M
3300009173|Ga0114996_11267551Not Available514Open in IMG/M
3300009425|Ga0114997_10146359All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium1400Open in IMG/M
3300009425|Ga0114997_10162414All Organisms → Viruses → Predicted Viral1311Open in IMG/M
3300009425|Ga0114997_10168793All Organisms → Viruses → Predicted Viral1280Open in IMG/M
3300009425|Ga0114997_10219791Not Available1083Open in IMG/M
3300009425|Ga0114997_10468996All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium673Open in IMG/M
3300009425|Ga0114997_10594583Not Available583Open in IMG/M
3300009441|Ga0115007_10897058Not Available605Open in IMG/M
3300009481|Ga0114932_10043652Not Available2908Open in IMG/M
3300009512|Ga0115003_10898969Not Available514Open in IMG/M
3300009593|Ga0115011_10130654Not Available1804Open in IMG/M
3300009605|Ga0114906_1208955Not Available651Open in IMG/M
3300009705|Ga0115000_10067361All Organisms → Viruses → Predicted Viral2431Open in IMG/M
3300009705|Ga0115000_10106964Not Available1880Open in IMG/M
3300009705|Ga0115000_10106996All Organisms → Viruses → Predicted Viral1880Open in IMG/M
3300009705|Ga0115000_10307120All Organisms → cellular organisms → Bacteria1025Open in IMG/M
3300009705|Ga0115000_10495136Not Available770Open in IMG/M
3300009705|Ga0115000_10865869Not Available553Open in IMG/M
3300009706|Ga0115002_10350660All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium1102Open in IMG/M
3300009706|Ga0115002_10680803Not Available728Open in IMG/M
3300010883|Ga0133547_11717901Not Available1165Open in IMG/M
3300017718|Ga0181375_1068926Not Available580Open in IMG/M
3300017757|Ga0181420_1104009Not Available872Open in IMG/M
3300017772|Ga0181430_1128288Not Available744Open in IMG/M
3300017775|Ga0181432_1024086All Organisms → Viruses → Predicted Viral1594Open in IMG/M
3300017775|Ga0181432_1067570All Organisms → Viruses → Predicted Viral1027Open in IMG/M
(restricted) 3300022933|Ga0233427_10020813All Organisms → Viruses → Predicted Viral4046Open in IMG/M
3300024344|Ga0209992_10064575Not Available1707Open in IMG/M
3300024344|Ga0209992_10429287Not Available517Open in IMG/M
3300025069|Ga0207887_1031666Not Available851Open in IMG/M
3300025078|Ga0208668_1045162All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus → unclassified Algoriphagus → Algoriphagus sp.827Open in IMG/M
3300025098|Ga0208434_1074126Not Available702Open in IMG/M
3300025108|Ga0208793_1048505Not Available1320Open in IMG/M
3300025125|Ga0209644_1015080Not Available1645Open in IMG/M
3300025128|Ga0208919_1015928All Organisms → Viruses → Predicted Viral2912Open in IMG/M
3300025128|Ga0208919_1054416All Organisms → Viruses → Predicted Viral1363Open in IMG/M
3300025128|Ga0208919_1092540Not Available981Open in IMG/M
3300025128|Ga0208919_1160611Not Available692Open in IMG/M
3300025133|Ga0208299_1120576Not Available860Open in IMG/M
3300025141|Ga0209756_1126457Not Available1061Open in IMG/M
3300025770|Ga0209362_1223311Not Available621Open in IMG/M
3300025873|Ga0209757_10057935All Organisms → Viruses → Predicted Viral1145Open in IMG/M
3300027704|Ga0209816_1274722Not Available520Open in IMG/M
3300027714|Ga0209815_1116104Not Available879Open in IMG/M
3300027801|Ga0209091_10042890Not Available2669Open in IMG/M
3300027801|Ga0209091_10087829All Organisms → Viruses → Predicted Viral1695Open in IMG/M
3300027801|Ga0209091_10104431All Organisms → Viruses → Predicted Viral1519Open in IMG/M
3300027801|Ga0209091_10106209Not Available1503Open in IMG/M
3300027801|Ga0209091_10192371All Organisms → Viruses → Predicted Viral1024Open in IMG/M
3300027839|Ga0209403_10037987All Organisms → Viruses → Predicted Viral3742Open in IMG/M
3300027844|Ga0209501_10382096Not Available839Open in IMG/M
3300027844|Ga0209501_10637251Not Available586Open in IMG/M
3300027847|Ga0209402_10337405All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium928Open in IMG/M
(restricted) 3300027861|Ga0233415_10334095Not Available719Open in IMG/M
3300027906|Ga0209404_10131416Not Available1507Open in IMG/M
3300028022|Ga0256382_1078418All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300028706|Ga0257115_1169475Not Available507Open in IMG/M
3300029448|Ga0183755_1074922Not Available743Open in IMG/M
3300031519|Ga0307488_10473118Not Available755Open in IMG/M
3300031588|Ga0302137_1051063All Organisms → Viruses → Predicted Viral1706Open in IMG/M
3300031588|Ga0302137_1072715All Organisms → Viruses → Predicted Viral1364Open in IMG/M
3300031588|Ga0302137_1246988Not Available600Open in IMG/M
3300031598|Ga0308019_10324659Not Available568Open in IMG/M
3300031605|Ga0302132_10006121All Organisms → cellular organisms → Bacteria6749Open in IMG/M
3300031605|Ga0302132_10030755All Organisms → cellular organisms → Bacteria2864Open in IMG/M
3300031605|Ga0302132_10034495All Organisms → cellular organisms → Bacteria2686Open in IMG/M
3300031605|Ga0302132_10131276All Organisms → Viruses → Predicted Viral1246Open in IMG/M
3300031605|Ga0302132_10468916Not Available557Open in IMG/M
3300031605|Ga0302132_10520404Not Available520Open in IMG/M
3300031606|Ga0302119_10075914All Organisms → Viruses → Predicted Viral1382Open in IMG/M
3300031627|Ga0302118_10019434All Organisms → cellular organisms → Bacteria3483Open in IMG/M
3300031627|Ga0302118_10482233Not Available546Open in IMG/M
3300031639|Ga0302117_10079520All Organisms → Viruses → Predicted Viral1497Open in IMG/M
3300031639|Ga0302117_10160432Not Available955Open in IMG/M
3300031639|Ga0302117_10378056All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium532Open in IMG/M
3300031658|Ga0307984_1018249All Organisms → Viruses → Predicted Viral2417Open in IMG/M
3300031675|Ga0302122_10088413Not Available1318Open in IMG/M
3300031701|Ga0302120_10310552Not Available571Open in IMG/M
3300031774|Ga0315331_10252234Not Available1305Open in IMG/M
3300032151|Ga0302127_10123117Not Available1256Open in IMG/M
3300032360|Ga0315334_10888567Not Available772Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine72.64%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine6.60%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater3.77%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface2.83%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.89%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.89%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine1.89%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.89%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.89%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean0.94%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine0.94%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.94%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.94%
Diffuse Hydrothermal Flow Volcanic VentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent0.94%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000158Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 100mEnvironmentalOpen in IMG/M
3300002760Marine viral communities from the Pacific Ocean - ETNP_6_1000EnvironmentalOpen in IMG/M
3300003540Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS896_ElGuapo_DNAEnvironmentalOpen in IMG/M
3300004460Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004461Marine viral communities from Newfoundland, Canada BC-2EnvironmentalOpen in IMG/M
3300006164Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNAEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006902Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006928Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaGEnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300006947Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNAEnvironmentalOpen in IMG/M
3300007963Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)EnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009425Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136EnvironmentalOpen in IMG/M
3300009441Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M MetagenomeEnvironmentalOpen in IMG/M
3300009481Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaGEnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300009605Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300017718Marine viral communities from the Subarctic Pacific Ocean - Lowphox_11 viral metaGEnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300022933 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MGEnvironmentalOpen in IMG/M
3300024344Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025069Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)EnvironmentalOpen in IMG/M
3300025078Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025125Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300025128Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025133Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025141Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)EnvironmentalOpen in IMG/M
3300025770Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025873Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300027704Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027714Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027801Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)EnvironmentalOpen in IMG/M
3300027839Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)EnvironmentalOpen in IMG/M
3300027844Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)EnvironmentalOpen in IMG/M
3300027847Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300027906Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028022Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750mEnvironmentalOpen in IMG/M
3300028706Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_100mEnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031588Marine microbial communities from Western Arctic Ocean, Canada - CBN3_SCMEnvironmentalOpen in IMG/M
3300031598Marine microbial communities from water near the shore, Antarctic Ocean - #284EnvironmentalOpen in IMG/M
3300031605Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1EnvironmentalOpen in IMG/M
3300031606Marine microbial communities from Western Arctic Ocean, Canada - AG5_TmaxEnvironmentalOpen in IMG/M
3300031627Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1EnvironmentalOpen in IMG/M
3300031639Marine microbial communities from Western Arctic Ocean, Canada - AG5_32.2EnvironmentalOpen in IMG/M
3300031658Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78EnvironmentalOpen in IMG/M
3300031675Marine microbial communities from Western Arctic Ocean, Canada - CB21_SCMEnvironmentalOpen in IMG/M
3300031701Marine microbial communities from Western Arctic Ocean, Canada - AG5_BottomEnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300032151Marine microbial communities from Western Arctic Ocean, Canada - CB4_SCMEnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
SI54feb11_100mDRAFT_103605423300000158MarineMIDGKKPTTIVTVMLKVQHEDIPKEGTASSWVESQMGWLDLDGIQFVEVLDEIN*
JGI25136J39404_106058213300002760MarineMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFVEVMDEIK*
FS896DNA_1090670023300003540Diffuse Hydrothermal Flow Volcanic VentMIDGKKPTTIVTVMLRVQHEDIPEDGTASSWVESQMGWLDLDGIQFVEVLDEIK*
Ga0066222_148131123300004460MarineMIDGKKPTTIVTVMLKVQHEDIPKNGTASSWVESQMGWLDLDGIQFVEVLDEIN*
Ga0066223_144398823300004461MarineMIDGKKPTTIVTVMLKVQHEDIPKNGTASSWVESQMGWLELDGIQFVEVMDELS*
Ga0075441_1006063683300006164MarineMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIS*
Ga0075441_1011701433300006164MarineMIDGKKPTTIVTVMLKVQHEDIPKNGTASSWVESQMGWLDLDGIQFVEVLDEIK*
Ga0075441_1012807133300006164MarineMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIK*
Ga0098035_124607133300006738MarineMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLDLDGIQFVEVLDEIK*
Ga0098044_106578413300006754MarineMIDGRKPTTIVTVMLKVQQEDIPEDGTASSWVESQMGWLELDGIQFVEVMDEIK*
Ga0098044_120213043300006754MarineMIDGKKPTTIVTVMLKVQHEDIPEGFTLADWVERELGWLNDSGIQFVEVMDEIK*
Ga0098054_110940723300006789MarineMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGQNKYWLDLDGIQFVEVLDEIK*
Ga0098054_136844023300006789MarineCLFELVVNMIDGKKPVTIVTVMLKVQHEDIPKDGTAGSWVESQMGWLDLDGIQFVEVIDEIN*
Ga0066372_1020770823300006902MarineMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFVEVLDEIK*
Ga0098060_110156613300006921MarineLTGWRFFYRKNKMIDGRKPTTIVTVMLKVQQEDIPEDGTASSWVESQMGWLELDGIQFVEVMDEIK*
Ga0098041_106173163300006928MarineMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLELDGIQFVEVLDEIK*
Ga0098036_117351543300006929MarineMVDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFV
Ga0075444_1004901743300006947MarineMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVMDEIN*
Ga0110931_104991623300007963MarineMIDGKKPVTIVTVMLKVQHEDIPKDGTAGSWVESQMGWLDLDGIQFVEVIDEIN*
Ga0110931_105865213300007963MarineMIDGKKPTTIVTVMLKVQQEDIPKDGTASSWVESQMGWLELDGIQF
Ga0110931_106088613300007963MarineMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGI
Ga0110931_112497933300007963MarineMVDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFVE
Ga0110931_114060013300007963MarineGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFVEVLDEIK*
Ga0114996_1040903333300009173MarineMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIN*
Ga0114996_1060255013300009173MarineMIDGKKPTTIVTVMLKVQHEDIPKEGTASSWVESQMGWLDLDGIQFVEVLDEIK*
Ga0114996_1126755113300009173MarineIVTVMLKVQHEDIPKDGTASSWVESQMGWLELDGIQFVEVLDEIK*
Ga0114997_1014635963300009425MarineMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFV
Ga0114997_1016241413300009425MarineKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIK*
Ga0114997_1016879313300009425MarineMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEV
Ga0114997_1021979113300009425MarineKPTTIVTVMLKVQHEDIPEDETASTWVAREMGWLENSGIEFVEVMDEIK*
Ga0114997_1046899623300009425MarineMIDGKKPTTIVTVMLKVQHEDIPKEGTASSWVESQMGWLELDGIQFVEVLDEIK*
Ga0114997_1059458323300009425MarineMINGKKPTTIVTVMLKVQHEDIPKEGTASSWVESQMGWLDLDGIQFVE
Ga0115007_1089705823300009441MarineMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDDIQFVEVLDEIN*
Ga0114932_1004365253300009481Deep SubsurfaceMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFVEVLDEIIK*
Ga0115003_1089896923300009512MarineMIDGKKPTAIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVMDELN*
Ga0115011_1013065433300009593MarineMIDGRKPTTIVTVMLKVQQEDIPKDGTASSWVESQMGWLELDGIQFVEVMDELS*
Ga0114906_120895523300009605Deep OceanMIDGRKPATIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFVEVLDEIK*
Ga0115000_1006736113300009705MarineRMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIK*
Ga0115000_1010696433300009705MarineMIDGKKPTTIVTVMLKVQQENIPKEGTASSWVESQMGWLDLDGIQFVEVLDEIK*
Ga0115000_1010699663300009705MarineMINGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQ
Ga0115000_1030712013300009705MarineKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIK*
Ga0115000_1049513623300009705MarineMINGKKPTTIVTVMLKVQHEDIPKEGTASSWVESQMGWLDLDGIQFVEVLDEIN*
Ga0115000_1086586933300009705MarineMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLELDGIQFVEVL
Ga0115002_1035066023300009706MarineMEKKQLFTTYQLREIKMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIK*
Ga0115002_1068080343300009706MarineMIDGEKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIK*
Ga0133547_1171790113300010883MarineMINGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLELDGI
Ga0181375_106892613300017718MarineYAGAEVPNHGLTLTGWRFFYRKNKMIDGRKPTTIVTVMLKVQQEDIPEDGTASSWVESQMGWLELDGIQFVEVLDEIK
Ga0181420_110400923300017757SeawaterMIDGRKPATIVTVMLKVQHEDIPEDGTASSWVESQMGWLDLDGIQFVEVLDENG
Ga0181430_112828823300017772SeawaterMIDGRKPATIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFVEVLDEIK
Ga0181432_102408653300017775SeawaterMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFVEVMDEIKY
Ga0181432_106757023300017775SeawaterMIDGKKPTTIVTVMLKVQHEDIPEGFTLADWVERELGWLNDSGIQFVEVMDEIK
(restricted) Ga0233427_10020813103300022933SeawaterMIDGKKPTTIVTVMLKVQHEDIPKEGTASSWVESQMGWLDLDGI
Ga0209992_1006457523300024344Deep SubsurfaceMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFVEVLDEIIK
Ga0209992_1042928723300024344Deep SubsurfaceMIDGRKPTTTVTVKLKVQHEDIPEDGTASSWVESQMGWLDLDGIQFVEVLDETK
Ga0207887_103166633300025069MarineMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFVEVMDEIK
Ga0208668_104516213300025078MarineDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFVEVLDEIK
Ga0208434_107412613300025098MarineGNKMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFVEVLDEIK
Ga0208793_104850523300025108MarineMIDGKKPTTIVTVMLKVQQEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIK
Ga0209644_101508053300025125MarineMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFVEVLDEIK
Ga0208919_101592853300025128MarineMIDGRKPTTIVTVMLKVQQEDIPEDGTASSWVESQMGWLELDGIQFVEVMDEIK
Ga0208919_105441623300025128MarineMIDGKKPVTIVTVMLKVQHEDIPKDGTAGSWVESQMGWLDLDGIQFVEVIDEIN
Ga0208919_109254013300025128MarineMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLDLDGIQFVEVLDEIK
Ga0208919_116061133300025128MarineMVDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFVEVLDEIK
Ga0208299_112057623300025133MarineMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGQNKYWLDLDGIQFVEVLDEIK
Ga0209756_112645733300025141MarineMIDGKKPTTIVTVMLKVQQEDIPKDGTASSWVESQMGWLELDGIQFVEVMDEIK
Ga0209362_122331123300025770MarineTIVTVMLKVQHEDIPEDGTASSWVESQMGWLDLDGIQFVEVLDEIN
Ga0209757_1005793513300025873MarineMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFVEVLDE
Ga0209816_127472213300027704MarineIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVMDEIN
Ga0209815_111610433300027714MarineMIDGKKPTTIVTVMLKVQHEDIPKNGTASSWVESQMGWLDLDGIQFVEVLDEIK
Ga0209091_1004289023300027801MarineMIDGKKPTTIVTVMLKVQHEDIPKEGTASSWVESQMGWLDLDGIQFVEVLDEIN
Ga0209091_1008782923300027801MarineMIDGKKPTTIVTVMLKVQHEDIPKEGTASSWVESQMGWLDLDGIQFVEVLDEIK
Ga0209091_1010443113300027801MarineRFSFYREIRMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLELDGIQFVEVLDEIK
Ga0209091_1010620913300027801MarineKMIDGKKPTTIVTVMLKVQQENIPKEGTASSWVESQMGWLDLDGIQFVEVLDEIK
Ga0209091_1019237123300027801MarineMIDGKKPTTIVTVMLKVQHEDIPKNGTASSWVESQMGWLELDGIQFVEVLDEIK
Ga0209403_1003798723300027839MarineMEKKQLFTTYQLREIKMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIK
Ga0209501_1038209643300027844MarineMIDGKKPTTIVTVMLKVQHEDIPKDGTASNWVESQMGWLDLDGIQFVEVLDEIK
Ga0209501_1063725123300027844MarineMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIN
Ga0209402_1033740513300027847MarineMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQF
(restricted) Ga0233415_1033409523300027861SeawaterMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLDLDGIQFVEVLDEIN
Ga0209404_1013141633300027906MarineMIDGRKPTTIVTVMLKVQQEDIPKDGTASSWVESQMGWLELDGIQFVEVMDELS
Ga0256382_107841823300028022SeawaterMTDGRKPTTIVTVMLKVQQEDIPKDETASSWVAREMGWLEHSGIQFVEVMDELG
Ga0257115_116947523300028706MarineMIDGKKPTTIVTVMLKVQHEDIPKEGTASSWVESQMGWLDLDGIQF
Ga0183755_107492213300029448MarineMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLDLDGIQFVEVLDENG
Ga0307488_1047311833300031519Sackhole BrineMIDGKKPTTIVTVMLKVQHEDIPKEGTASSWVESQMGWLDLDGIQFVEVMDE
Ga0302137_105106333300031588MarineMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLELDGIQFVEVLDEIK
Ga0302137_107271513300031588MarineMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQ
Ga0302137_124698813300031588MarineIRMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIK
Ga0308019_1032465923300031598MarineVKGLTGMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIK
Ga0302132_10006121133300031605MarineMINGKKPTTIVTVMLKVQHEDIPKEGTASSWVESQMGWLDLDGIQFVEVLDEIN
Ga0302132_1003075513300031605MarineMINGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIK
Ga0302132_1003449513300031605MarineMIDGKKPTTIVTVMLKVQHEDIPKEGTASSWVESQMGWLDLDGIQFVE
Ga0302132_1013127643300031605MarineKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIK
Ga0302132_1046891633300031605MarineTTIVTVMLKVQHEDIPKEGTASSWVESQMGWLDLDGIQFVEVLDEIN
Ga0302132_1052040433300031605MarineMIDGKKPTTIVTVMLKVQQENIPKEGTASSWVESQMGWLDLDGIQFVEVLDEIK
Ga0302119_1007591423300031606MarineMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWVESQMGWLELDGIQFVEVMDEIN
Ga0302118_1001943473300031627MarineLMEKKQLFTTYQLREIKMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEIK
Ga0302118_1048223333300031627MarineMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLELDGIQF
Ga0302117_1007952013300031639MarineNTTRENRMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLDEI
Ga0302117_1016043233300031639MarineMINGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLELDGIQFVEVLDEIK
Ga0302117_1037805623300031639MarineMIDGKKPTTIVTVMLKVQHEDIPKDGTASSWVESQMGWLDLDGIQFVEVLD
Ga0307984_101824943300031658MarineMIDGKKPTTIVTVMLKVQQEDIPKDGTASSWVESQMGWLDLDGIQFVEVMNELN
Ga0302122_1008841353300031675MarineKPTTIVTVMLKVQQEDIPKEGTAGSWVESQMGWLDLDGIQFVEVLDEIK
Ga0302120_1031055233300031701MarineTIVTVMLKVQHEDIPKNGTASSWVESQMGWLDLDGIQFVEVLDEIK
Ga0315331_1025223453300031774SeawaterMIDGKKPTTIVTVMLKVQHEDIPEDGTASNWVESQMGWLELDGIQFVEVLDEIK
Ga0302127_1012311733300032151MarineMIDGKKPTTIVTVMLKVQHEDIPKEGTASSWVESQMGWLDLDGIQFV
Ga0315334_1088856713300032360SeawaterMIDGKKPTTIVTVMLKVQHEDIPEDGTASSWGESQMGWLELDGIQFVEVLDEIK


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