Metagenome Family F094382

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094382
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	63 residues
Representative Sequence	MTYKELIEECKKRGFTIVDDNGKFSVLDKKGKKHPLNSEDMKKYKSGKEEVPSYFLEFLDVL
Number of Associated Samples	89
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	12.96 %
% of genes near scaffold ends (potentially truncated)	19.81 %
% of genes from short scaffolds (< 2000 bps)	79.25 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.698 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (33.019 % of family members)
Environment Ontology (ENVO)	Unclassified (79.245 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (90.566 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.87% β-sheet: 11.29% Coil/Unstructured: 54.84%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF02684	LpxB	13.21
PF13438	DUF4113	11.32
PF12705	PDDEXK_1	8.49
PF01068	DNA_ligase_A_M	3.77
PF04480	DUF559	1.89
PF04679	DNA_ligase_A_C	1.89
PF11074	DUF2779	1.89
PF13205	Big_5	0.94
PF12710	HAD	0.94
PF13374	TPR_10	0.94
PF00069	Pkinase	0.94
PF06230	LpxI_C	0.94
PF03120	DNA_ligase_OB	0.94
PF02668	TauD	0.94
PF01722	BolA	0.94
PF13475	DUF4116	0.94
PF00596	Aldolase_II	0.94
PF06094	GGACT	0.94
PF00456	Transketolase_N	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0763	Lipid A disaccharide synthetase	Cell wall/membrane/envelope biogenesis [M]	13.21
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	5.66
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.77
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	3.77
COG0021	Transketolase	Carbohydrate transport and metabolism [G]	0.94
COG0272	NAD-dependent DNA ligase	Replication, recombination and repair [L]	0.94
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.94
COG3494	Uncharacterized conserved protein, DUF1009 family	Function unknown [S]	0.94
COG3959	Transketolase, N-terminal subunit	Carbohydrate transport and metabolism [G]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.70 %
Unclassified	root	N/A	28.30 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.70 %
Unclassified	root	N/A	28.30 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.70 %
Unclassified	root	N/A	28.30 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	66.04 %
Unclassified	root	N/A	28.30 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	60.38 %
Unclassified	root	N/A	28.30 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.94 %

Name	Rank	Taxonomy	Distribution
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	59.43 %
Unclassified	root	N/A	28.30 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %

Name	Rank	Taxonomy	Distribution
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	55.66 %
Unclassified	root	N/A	28.30 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.94 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Pelagibacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae	41.51 %
Unclassified	root	N/A	28.30 %
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	6.60 %
Oscillospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	0.94 %
Polynucleobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	0.94 %

Name	Rank	Taxonomy	Distribution
Pelagibacteraceae bacterium TMED201	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	34.91 %
Unclassified	root	N/A	28.30 %
Pelagibacteraceae bacterium BACL5 MAG-120705-bin12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium BACL5 MAG-120705-bin12	6.60 %
unclassified Candidatus Pelagibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter	0.94 %
Candidatus Pelagibacter ubique	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	0.94 %
Acetivibrio	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Acetivibrio	0.94 %
Polynucleobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	0.94 %

Name	Rank	Taxonomy	Distribution
Pelagibacteraceae bacterium TMED201	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	34.91 %
Unclassified	root	N/A	28.30 %
Pelagibacteraceae bacterium BACL5 MAG-120705-bin12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium BACL5 MAG-120705-bin12	6.60 %
Candidatus Pelagibacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	0.94 %
Acetivibrio cellulolyticus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Acetivibrio → Acetivibrio cellulolyticus	0.94 %
Candidatus Pelagibacter ubique	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	0.94 %
Polynucleobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000101\|DelMOSum2010_c10039804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	2469	Open in IMG/M
3300001351\|JGI20153J14318_10003761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	10018	Open in IMG/M
3300001354\|JGI20155J14468_10040212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	2103	Open in IMG/M
3300001972\|GOS2216_10085180	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300002033\|GOS24894_10348034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Acetivibrio → Acetivibrio cellulolyticus	1966	Open in IMG/M
3300003620\|JGI26273J51734_10023862	All Organisms → cellular organisms → Bacteria → Proteobacteria	2275	Open in IMG/M
3300004097\|Ga0055584_100065296	All Organisms → cellular organisms → Bacteria	3597	Open in IMG/M
3300005239\|Ga0073579_1002065	All Organisms → cellular organisms → Bacteria	1998	Open in IMG/M
3300005404\|Ga0066856_10220332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	823	Open in IMG/M
3300005428\|Ga0066863_10330280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	527	Open in IMG/M
3300005429\|Ga0066846_10213014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	641	Open in IMG/M
3300005430\|Ga0066849_10406113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	512	Open in IMG/M
3300005514\|Ga0066866_10012934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	3336	Open in IMG/M
3300005514\|Ga0066866_10177863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium BACL5 MAG-120705-bin12	752	Open in IMG/M
3300005514\|Ga0066866_10227322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	649	Open in IMG/M
3300005522\|Ga0066861_10303833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium BACL5 MAG-120705-bin12	541	Open in IMG/M
3300005934\|Ga0066377_10157211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	693	Open in IMG/M
3300005946\|Ga0066378_10097690	Not Available	912	Open in IMG/M
3300005971\|Ga0066370_10006461	All Organisms → cellular organisms → Bacteria	3029	Open in IMG/M
3300006166\|Ga0066836_10012298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	4697	Open in IMG/M
3300006166\|Ga0066836_10101078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	1671	Open in IMG/M
3300006166\|Ga0066836_10384927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	844	Open in IMG/M
3300006345\|Ga0099693_1393264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	924	Open in IMG/M
3300006843\|Ga0068496_133962	Not Available	759	Open in IMG/M
3300006902\|Ga0066372_10064324	Not Available	1820	Open in IMG/M
3300006902\|Ga0066372_10445429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	755	Open in IMG/M
3300007114\|Ga0101668_1028194	Not Available	1112	Open in IMG/M
3300007116\|Ga0101667_1039923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	829	Open in IMG/M
3300007137\|Ga0101673_1023149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	971	Open in IMG/M
3300007152\|Ga0101672_1029365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	913	Open in IMG/M
3300007283\|Ga0066366_10095622	Not Available	1136	Open in IMG/M
3300008097\|Ga0111541_10439260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	570	Open in IMG/M
3300008097\|Ga0111541_10454495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	560	Open in IMG/M
3300009071\|Ga0115566_10023523	All Organisms → cellular organisms → Bacteria → Proteobacteria	4470	Open in IMG/M
3300009074\|Ga0115549_1073112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	1179	Open in IMG/M
3300009074\|Ga0115549_1108165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	926	Open in IMG/M
3300009076\|Ga0115550_1068601	Not Available	1387	Open in IMG/M
3300009420\|Ga0114994_10841031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	596	Open in IMG/M
3300009433\|Ga0115545_1309250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	525	Open in IMG/M
3300009472\|Ga0115554_1168489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	899	Open in IMG/M
3300009476\|Ga0115555_1205464	Not Available	811	Open in IMG/M
3300009481\|Ga0114932_10381659	Not Available	837	Open in IMG/M
3300009481\|Ga0114932_10839665	Not Available	531	Open in IMG/M
3300009593\|Ga0115011_10934350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	729	Open in IMG/M
3300009703\|Ga0114933_10066603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	2591	Open in IMG/M
3300009790\|Ga0115012_10883034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	730	Open in IMG/M
3300012919\|Ga0160422_10096534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	1741	Open in IMG/M
3300012920\|Ga0160423_10638546	Not Available	720	Open in IMG/M
3300012928\|Ga0163110_10329578	Not Available	1125	Open in IMG/M
3300012950\|Ga0163108_10411738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	872	Open in IMG/M
3300012950\|Ga0163108_10938216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.	559	Open in IMG/M
3300012953\|Ga0163179_11467036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	613	Open in IMG/M
3300017735\|Ga0181431_1073694	All Organisms → cellular organisms → Bacteria → Proteobacteria	766	Open in IMG/M
3300020165\|Ga0206125_10068188	Not Available	1625	Open in IMG/M
3300020165\|Ga0206125_10180697	Not Available	832	Open in IMG/M
3300020175\|Ga0206124_10077823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	1401	Open in IMG/M
3300020270\|Ga0211671_1019229	Not Available	1351	Open in IMG/M
3300020292\|Ga0211663_1012709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	1321	Open in IMG/M
3300020297\|Ga0211490_1090380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	504	Open in IMG/M
3300020332\|Ga0211502_1009364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2173	Open in IMG/M
3300020334\|Ga0211593_1059445	Not Available	801	Open in IMG/M
3300020374\|Ga0211477_10000625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	21488	Open in IMG/M
3300020377\|Ga0211647_10041924	Not Available	1717	Open in IMG/M
3300020388\|Ga0211678_10194846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	852	Open in IMG/M
3300020388\|Ga0211678_10266872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium BACL5 MAG-120705-bin12	703	Open in IMG/M
3300020388\|Ga0211678_10383888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	560	Open in IMG/M
3300020391\|Ga0211675_10198079	Not Available	878	Open in IMG/M
3300020392\|Ga0211666_10239818	Not Available	689	Open in IMG/M
3300020413\|Ga0211516_10104574	Not Available	1352	Open in IMG/M
3300020418\|Ga0211557_10051055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	2160	Open in IMG/M
3300020419\|Ga0211512_10152963	Not Available	1068	Open in IMG/M
3300020424\|Ga0211620_10345722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	632	Open in IMG/M
3300020434\|Ga0211670_10116639	Not Available	1041	Open in IMG/M
3300020452\|Ga0211545_10481092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	561	Open in IMG/M
3300020455\|Ga0211664_10168915	Not Available	1020	Open in IMG/M
3300020456\|Ga0211551_10248907	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300020472\|Ga0211579_10037523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	3062	Open in IMG/M
3300020472\|Ga0211579_10105350	All Organisms → cellular organisms → Bacteria → Proteobacteria	1688	Open in IMG/M
3300020473\|Ga0211625_10010054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	7465	Open in IMG/M
3300020474\|Ga0211547_10053794	Not Available	2157	Open in IMG/M
3300020477\|Ga0211585_10558126	Not Available	637	Open in IMG/M
3300020477\|Ga0211585_10567365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	630	Open in IMG/M
3300020595\|Ga0206126_10061327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	1985	Open in IMG/M
3300021085\|Ga0206677_10042398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	2432	Open in IMG/M
3300021087\|Ga0206683_10144254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium BACL5 MAG-120705-bin12	1276	Open in IMG/M
(restricted) 3300022920\|Ga0233426_10091691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1356	Open in IMG/M
(restricted) 3300024255\|Ga0233438_10004013	Not Available	13212	Open in IMG/M
(restricted) 3300024324\|Ga0233443_1304661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	527	Open in IMG/M
3300025577\|Ga0209304_1033571	Not Available	1482	Open in IMG/M
3300025577\|Ga0209304_1040119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	1297	Open in IMG/M
3300025594\|Ga0209094_1098870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	665	Open in IMG/M
3300026083\|Ga0208878_1071426	Not Available	876	Open in IMG/M
3300026093\|Ga0208624_1019523	Not Available	2055	Open in IMG/M
3300026257\|Ga0208407_1100678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	914	Open in IMG/M
3300026257\|Ga0208407_1185252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	616	Open in IMG/M
3300026269\|Ga0208766_1039081	Not Available	1571	Open in IMG/M
3300026321\|Ga0208764_10019442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	3770	Open in IMG/M
3300026321\|Ga0208764_10023751	All Organisms → cellular organisms → Bacteria	3378	Open in IMG/M
3300027774\|Ga0209433_10409159	Not Available	502	Open in IMG/M
3300027779\|Ga0209709_10058451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	2183	Open in IMG/M
3300027791\|Ga0209830_10279752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium BACL5 MAG-120705-bin12	747	Open in IMG/M
3300027906\|Ga0209404_10132057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	1504	Open in IMG/M
3300031757\|Ga0315328_10190344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium BACL5 MAG-120705-bin12	1199	Open in IMG/M
3300031775\|Ga0315326_10091018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	1974	Open in IMG/M
3300032011\|Ga0315316_10337576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium BACL5 MAG-120705-bin12	1264	Open in IMG/M
3300032360\|Ga0315334_10664571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED201	900	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	41.51%
Unclassified	Environmental → Aquatic → Marine → Unclassified	24.53%
Pelagic	Environmental → Aquatic → Marine → Pelagic	13.21%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	6.60%
Volcanic	Environmental → Aquatic → Marine → Volcanic	6.60%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	3.77%
Inlet	Environmental → Aquatic → Marine → Inlet	2.83%
Strait	Environmental → Aquatic → Marine → Strait	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	34.91%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	24.53%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	13.21%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	6.60%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	6.60%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	6.60%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	33.02%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	24.53%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	9.43%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	5.66%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	3.77%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	2.83%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	2.83%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	2.83%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	2.83%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	1.89%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	1.89%
Volcanic Co2 Seeps	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seeps	1.89%
Volcanic Co2 Seep Seawater	Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater	1.89%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.94%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.94%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.94%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.94%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300001351	Pelagic Microbial community sample from North Sea - COGITO 998_met_03	Environmental	Open in IMG/M
3300001354	Pelagic Microbial community sample from North Sea - COGITO 998_met_05	Environmental	Open in IMG/M
3300001972	Marine microbial communities from the Sargasso Sea - GS000d	Environmental	Open in IMG/M
3300002033	Marine microbial communities from the Sargasso Sea - GS000a &b	Environmental	Open in IMG/M
3300003620	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA	Environmental	Open in IMG/M
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental	Open in IMG/M
3300005239	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine	Environmental	Open in IMG/M
3300005404	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205	Environmental	Open in IMG/M
3300005428	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV253	Environmental	Open in IMG/M
3300005429	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV76	Environmental	Open in IMG/M
3300005430	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69	Environmental	Open in IMG/M
3300005514	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263	Environmental	Open in IMG/M
3300005522	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV257	Environmental	Open in IMG/M
3300005934	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B	Environmental	Open in IMG/M
3300005946	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_DCM_ad_71m_LV_A	Environmental	Open in IMG/M
3300005971	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A	Environmental	Open in IMG/M
3300006166	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91	Environmental	Open in IMG/M
3300006345	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m	Environmental	Open in IMG/M
3300006843	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT237_1_0075m	Environmental	Open in IMG/M
3300006902	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A	Environmental	Open in IMG/M
3300007114	Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble', waterEBis4	Environmental	Open in IMG/M
3300007116	Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, waterEBis3	Environmental	Open in IMG/M
3300007137	Seawater microbiome, Papua New Guinea CO2 seep, Dobu 'control', water-dc	Environmental	Open in IMG/M
3300007152	Seawater microbiome, Papua New Guinea CO2 seep, Dobu 'bubble', waterEBds3	Environmental	Open in IMG/M
3300007283	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_250_ad_252m_LV_B	Environmental	Open in IMG/M
3300008097	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (version 2)	Environmental	Open in IMG/M
3300009071	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405	Environmental	Open in IMG/M
3300009074	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430	Environmental	Open in IMG/M
3300009076	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511	Environmental	Open in IMG/M
3300009420	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152	Environmental	Open in IMG/M
3300009433	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330	Environmental	Open in IMG/M
3300009472	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404	Environmental	Open in IMG/M
3300009476	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407	Environmental	Open in IMG/M
3300009481	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG	Environmental	Open in IMG/M
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental	Open in IMG/M
3300009703	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG	Environmental	Open in IMG/M
3300009790	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome	Environmental	Open in IMG/M
3300012919	Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300012950	Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG	Environmental	Open in IMG/M
3300012953	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome	Environmental	Open in IMG/M
3300017735	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21	Environmental	Open in IMG/M
3300020165	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1	Environmental	Open in IMG/M
3300020175	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2	Environmental	Open in IMG/M
3300020270	Marine microbial communities from Tara Oceans - TARA_B100001029 (ERX555928-ERR599042)	Environmental	Open in IMG/M
3300020292	Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555930-ERR599113)	Environmental	Open in IMG/M
3300020297	Marine microbial communities from Tara Oceans - TARA_B000000437 (ERX555970-ERR598979)	Environmental	Open in IMG/M
3300020332	Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX555956-ERR598975)	Environmental	Open in IMG/M
3300020334	Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555938-ERR599091)	Environmental	Open in IMG/M
3300020374	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)	Environmental	Open in IMG/M
3300020377	Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)	Environmental	Open in IMG/M
3300020388	Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)	Environmental	Open in IMG/M
3300020391	Marine microbial communities from Tara Oceans - TARA_B100000989 (ERX556130-ERR598967)	Environmental	Open in IMG/M
3300020392	Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)	Environmental	Open in IMG/M
3300020413	Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092)	Environmental	Open in IMG/M
3300020418	Marine microbial communities from Tara Oceans - TARA_B100002051 (ERX556028-ERR599136)	Environmental	Open in IMG/M
3300020419	Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)	Environmental	Open in IMG/M
3300020424	Marine microbial communities from Tara Oceans - TARA_B100000242 (ERX556056-ERR599138)	Environmental	Open in IMG/M
3300020434	Marine microbial communities from Tara Oceans - TARA_B100001013 (ERX555944-ERR599071)	Environmental	Open in IMG/M
3300020452	Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)	Environmental	Open in IMG/M
3300020455	Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)	Environmental	Open in IMG/M
3300020456	Marine microbial communities from Tara Oceans - TARA_B100001741 (ERX555984-ERR599123)	Environmental	Open in IMG/M
3300020472	Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)	Environmental	Open in IMG/M
3300020473	Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)	Environmental	Open in IMG/M
3300020474	Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)	Environmental	Open in IMG/M
3300020477	Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)	Environmental	Open in IMG/M
3300020595	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1	Environmental	Open in IMG/M
3300021085	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015	Environmental	Open in IMG/M
3300021087	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015	Environmental	Open in IMG/M
3300022920 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MG	Environmental	Open in IMG/M
3300024255 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG	Environmental	Open in IMG/M
3300024324 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_200_MG	Environmental	Open in IMG/M
3300025577	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)	Environmental	Open in IMG/M
3300025594	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes)	Environmental	Open in IMG/M
3300026083	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A (SPAdes)	Environmental	Open in IMG/M
3300026093	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_DCM_ad_71m_LV_A (SPAdes)	Environmental	Open in IMG/M
3300026257	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes)	Environmental	Open in IMG/M
3300026269	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263 (SPAdes)	Environmental	Open in IMG/M
3300026321	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91 (SPAdes)	Environmental	Open in IMG/M
3300027774	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m (SPAdes)	Environmental	Open in IMG/M
3300027779	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)	Environmental	Open in IMG/M
3300027791	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)	Environmental	Open in IMG/M
3300027906	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)	Environmental	Open in IMG/M
3300031757	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315	Environmental	Open in IMG/M
3300031775	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315	Environmental	Open in IMG/M
3300032011	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416	Environmental	Open in IMG/M
3300032360	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_100398045	3300000101	Marine	MTYEELIEECKKRGFTLVDDNGKFSVLDKKGKKSPLNSEDMKKYKSGKEEVPSYFLELLDVL*
JGI20153J14318_100037617	3300001351	Pelagic Marine	LGWLRQPIKNMTYKELIEECKKRGFTLVDDNGKFSVLDKNGKKHPLNSEDMKKYKSGKEEVPSYFLELLDVL*
JGI20155J14468_100402124	3300001354	Pelagic Marine	MTYEELIEECKKRGFTLVDDNGKFSVLDKKGKKSPLNSEDMKKYKSGKEEVPSY
GOS2216_100851802	3300001972	Marine	MYKINNLNLIDKIIKLMNMNYKDLIKECKKRGITIVDDNGKFSALDKNGKSHKLNNRDMKKYKSGKKEVPNYFIEFLDVL*
GOS24894_103480341	3300002033	Marine	MTYKELIKECKKRGFTLVDDNGKFSVLDKKGKEFPLNSEDMKKYKSGKEEVPPYFLEFLDVCK
JGI26273J51734_100238623	3300003620	Marine	LGWLRQPIKNMTYKELIEECKKRGFTIVDDNGKFSVLDKNGKKHPLNSEDMKKYKSGKEEVPSYFLELLDVL*
Ga0055584_1000652967	3300004097	Pelagic Marine	VKYIELINECKKRGLTIIDDNGKFSVLDKKGVSSKLNSRDMKKYKSGKEDVPDYFLEFLDALN*
Ga0073579_10020653	3300005239	Marine	MNYKDLIKECKKRGITIIDDNGKFSALDKNGKSHKLNNRDMKKYKAGKEEVPSYFIEFLDVL*
Ga0066856_102203321	3300005404	Marine	LIKECKKRGLTISDDNGKFSLIDKEGKKHGLNSQDMKLYKSGKEEVPNYFIEFLDVHK*
Ga0066863_103302802	3300005428	Marine	MNYKDLIKECKKRGLTISDDNGKFSLMDKKGKKHALNSEDMKLYKSGKEEVPNYFIEFLDVLK*
Ga0066846_102130142	3300005429	Marine	MNYKDLIKECKKRGLTISDDNGKFSLIDKKGKKHALNSEDMKLYKSGKEEVPNYFIEFLDVLK*
Ga0066849_104061132	3300005430	Marine	MNYKDLIKECKKRGLTISDDNGKFSLIDKEGKKHGLNSQDMKLYKSGKEEVPNYFIEFLDVHK*
Ga0066866_100129342	3300005514	Marine	MNYKDLVNECKKRGITIIGDNGKFSLLDKKGKEHKILNNIDMRKYQLGKEEVPDYFIELLDTL*
Ga0066866_101778632	3300005514	Marine	MNYKDLIKECKKRGITIIDDNGKFSALDKNGKSHKLNNRDMKKYKAGKEEVPNYFIEFLDVL*
Ga0066866_102273222	3300005514	Marine	MNYKDLIKECKKRGLTISDDNGKFSLIDKEGKKHGLNSQDMKLYQSGKEEVPNYFIEFLDIHK*
Ga0066861_103038331	3300005522	Marine	YKDLIKECKKRGITIIDDNGKFSALDKNGKSHKLNNRDMKKYKAGKEEVPNYFIEFLEVL
Ga0066377_101572112	3300005934	Marine	MTYKELIKECKKRGFTLVDDNGKFSVLDKKGKEFPLNSEDMKKYKSGKEEVPPYFLEFLDVL*
Ga0066378_100976901	3300005946	Marine	MTYKELIEECKKRGFTLVDDNGKFSVLDKKGKEFPLNSEDMKKYKSGKEEVPPYFLEFLDVL*
Ga0066370_100064612	3300005971	Marine	MTYKELIKECKKRGFTLVDDNGKFSVLDKKGKEFPLNSEDMKKYKSGKEEVPRYFLEFLDVL*
Ga0066836_100122987	3300006166	Marine	MNYKDLIKECKKRGLTISDDNGKFSLIDKEGKKHGLNSKDMKLYKSGKEEVPNYFIEFLDVHK*
Ga0066836_101010784	3300006166	Marine	MNYKDLVNECKKRGITIIGDNGKFSLLDKKGKEHKILNNKDMKKYISGKEEVPDYFIEVLDTL*
Ga0066836_103849271	3300006166	Marine	LNIKKILVKILDMNYKDLIKECKKRGLTISDDNGKFSLMDKKGKKHALNSEDMKLYKSGKEEVPNYFIEFLDVLK*
Ga0099693_13932642	3300006345	Marine	MTYKELIKECKKRGFTLVDDNGKFSVLDKEGRDFPLNSEDMKKYKSGKEEVPPYFLEFLDVL*
Ga0068496_1339621	3300006843	Marine	MTYKELIKECKKRGFTLVDDNGKFSVLDKIGKEFPLNSEDMKKYKSGKEEVPPYFLEFLDVL*
Ga0066372_100643242	3300006902	Marine	MNYKDLIKECKKRGITIIGDNGKFSLLDKKGKEHKILNNRDMKKYQSGKEEVPDYFIELLDTL*
Ga0066372_104454291	3300006902	Marine	LNVKKILIRILDMDYKDLIKECKKRGLTLVEENGKFSILDKKGKSHELNTSDMKKYKSGKEEVPGYFIEFLDSM*
Ga0101668_10281942	3300007114	Volcanic Co2 Seep Seawater	RGFTLVDDNGKFSVLDKKGKEFPLNSEDMKKYKSGKEEVPPYFLEFLDVL*
Ga0101667_10399232	3300007116	Volcanic Co2 Seep Seawater	MTYKELIKECKKRGFTLVDDNGKFSVLDKEGREFPLNSEDMKKYKSGKEEVPPYFLEFLDLKDISTETT*
Ga0101673_10231492	3300007137	Volcanic Co2 Seeps	MTYKELIKECKKRGFTLVDDNGKFSVLDKEGREFPLNSEDMKKYKSGKEEVPPYFLEFLDVL*
Ga0101672_10293652	3300007152	Volcanic Co2 Seeps	MTYKELIKECKKRGFTIVDDNGKFSVLDKKGKEFPLNSEDMKKYKSGKEEVPPYFLEFLDVL*
Ga0066366_100956222	3300007283	Marine	MNYKDLVKECKKRGITIIGDNGKFSLLDKKGKEHKILNNRDMKKYQSGKEEVPDYFIELLDTL*
Ga0111541_104392602	3300008097	Marine	MTYNELITECKKRGLTIVDDNGKFSVLDKNGKEFPINSEDMKNYKSGKEEVPPYFLEFLDVL*
Ga0111541_104544952	3300008097	Marine	MTYKELIEECKKRGFTLVEDNGKFSVLDKKGKEHPLNSEDMKLYKSGKEEVPPYFLEFLDVL*
Ga0115566_100235238	3300009071	Pelagic Marine	MTYKELIEECKKRGFTIVDDNGKFSVLDKNGKKHPLNSEDMKKYKSGKEEVPSYFLELLDVL*
Ga0115549_10731121	3300009074	Pelagic Marine	MTYKELIEECKKRGFTLVDDNGKFSVLDKNGKKHPLNSEDMKKYKSGKEEVPSYFLELLDVL*
Ga0115549_11081653	3300009074	Pelagic Marine	MTYEELIEECKKRGFTIVDDNGKFSVLDKKGKKSPLNSEDMKKYKSGKEEVPSYFLELLDVL*
Ga0115550_10686011	3300009076	Pelagic Marine	MTYEELIEECKKRGFTLVDDNGKFSVLDKNGKKHPLNSEDMKKYKSGKEEVPSYFLELLDVL*
Ga0114994_108410311	3300009420	Marine	MTYKELIEECKKRGFTLVDDNGKFSVLDKKGKKSPLNSEDMKKYKSGKEEVPSYFLELLDVL*
Ga0115545_13092502	3300009433	Pelagic Marine	GWLRQPIKNMTYKELIEECKKRGFTIVDDNGKFSVLDKNGKKHPLNSEDMKKYKSGKEEVPSYFLELLDVL*
Ga0115554_11684891	3300009472	Pelagic Marine	ELIEECKKRGFTIVDDNGKFSVLDKNGKKHPLNSEDMKKYKSGKEEVPSYFLELLDVL*
Ga0115555_12054641	3300009476	Pelagic Marine	MTYEELIEECKKRGFTLVDDNGKFSVLDKKGKKSPLNSEDMKKYKSGKELVPSYFLELLDVL*
Ga0114932_103816592	3300009481	Deep Subsurface	MTYKELIEECKKRELTIVDDNGKFSVLDKKGKKHPLNSEDMKLYKSGKEEVPPYFLEFLDVL*
Ga0114932_108396652	3300009481	Deep Subsurface	MNYKDLVKECKKRGITIIGDNGKFSLLDKKGKEHKILNNRDMKKYQSEKEEVPDNFIELLDTL*
Ga0115011_109343502	3300009593	Marine	MNYKDLIKECKKRGLTISDNNGKFSLIDKEGKKHGLNSQDMKLYKSGKEEVPNYFIEFLDVHK*
Ga0114933_100666032	3300009703	Deep Subsurface	MKYKELINECKKRGLTIIEDNGEFSVLNKKGVSSKLNSSDMKLYKSGKEDVPDYFLEFLDTLN*
Ga0115012_108830342	3300009790	Marine	MNYKDLIKECKKRGLTISEDNGKFSLIDKEGKKHGLNSQDMKLYKSGKEEVPNYFIEFLDVHK*
Ga0160422_100965343	3300012919	Seawater	MTYKELIEECKKRGFTLVDDNGKFSVLDKEGRDFPLNSEDMKKYKSGKEEVPPYFLEFLDVL*
Ga0160423_106385462	3300012920	Surface Seawater	MTYKELIKECKKRGFTLVDDNGKFSVLDKEGREFPLNSEDMKKYKSGKEEVPPYFLEFLNVL*
Ga0163110_103295783	3300012928	Surface Seawater	MTYKELIKECKKRGFTLVDDNGKFSVLDKKGKEFPLNSEDMKKYKSGKEEVPPYFLEFLD
Ga0163108_104117381	3300012950	Seawater	LNIKKILIKILDMNYKDLIKECKKRGLTISDDNGKFSLIDKEGKKHGLNSQDMKLYQSGKEEVPNYFIEFLDIHK*
Ga0163108_109382162	3300012950	Seawater	MNYKNLIKECKKRGLTIFDDNGKFSLIDKEDKEHELNSEDMKLYKSGKEEVPNYFIEFLDGFK*
Ga0163179_114670362	3300012953	Seawater	VKYKELINECKKRGLTIIDDNGKFSVLNKKGVSSKLNSSDMKLYKSGKEDVPDYFLEFLDALN*
Ga0181431_10736941	3300017735	Seawater	KLIEECKKRGFTIVDDNGKFSVLDKNGKKHPLNSEDMKKYKSGKEEVPSYFLEFLDVL
Ga0206125_100681882	3300020165	Seawater	MTYKELIEECKKRGFTIVDDNGKFSVLDKNGKKHPLNSEDMKKYKSGKEEVPSYFLELLDVL
Ga0206125_101806973	3300020165	Seawater	CKKRGFTIVDDNGKFSVLDKKGKKSPLNSEDMKKYKSGKEEVPSYFLELLDVL
Ga0206124_100778232	3300020175	Seawater	MTYKELIEECKKRGFTIVDDNGKFSVLDKKGKKHPLNSEDMKKYKSGKEEVPSYFLELLDVL
Ga0211671_10192292	3300020270	Marine	MTYDELITECKKRGLTIVDDNGKFSVLDKNGKEFPINSQDMKNYKSGKEEVPPYFLEFLDVL
Ga0211663_10127091	3300020292	Marine	VKYVELINECKKRGLTIIDDNGKFSVLDKKGVSSKLNSRDMKKYKSGKEDVPDYFLEFLDALN
Ga0211490_10903802	3300020297	Marine	MTYKELIKECKKRGFTLVDDNGKFSVLDKKGKEFPLNSEDMKKYKSGKEEVPRYFLEFLDVL
Ga0211502_10093641	3300020332	Marine	MNYKDLVNECKKRGITIIGHNGKFSLLDKKGKEHKILNNIDMRKYQSGKEEVPDSFIELLDTL
Ga0211593_10594452	3300020334	Marine	MTYKELIKECKKRGFTLVDDNGKFSVLDKKGKEFPLNSEDMKKYKSGKKEVPRYFLEFLDVL
Ga0211477_1000062513	3300020374	Marine	MKYKELINECKKRGLTIIEDNGEFSVLNKKGVSSKLNSSDMKLYKSGKEDVPDYFLEFLDTLN
Ga0211647_100419242	3300020377	Marine	MTYKELIKECKKRGFTLVDDNGKFSVLDKEGREFPLNSEDMKKYKSGKEEVPPYFLEFLNVL
Ga0211678_101948461	3300020388	Marine	MNYKDLIKECKKRGITIIDDNGKFSALDKNGKSHKLNNRDMKKYKAGKEEVPSYFIEFLE
Ga0211678_102668722	3300020388	Marine	NYKDLIKECKKRGITIIDDNGKFSALDKNGKSHKLNNRDMKKYKAGKEEVPSYFIEFLEV
Ga0211678_103838881	3300020388	Marine	MTYKELIEECKKRELTIIDDNGKFSVLDKKGKKHPLNSEDMKLYKSGKEEVPPYFLEFLDVL
Ga0211675_101980792	3300020391	Marine	MTYKELIKECKKRGFTLVEDNGKFSVLDKKGKEHPLNSEDMKLYKSGKEEVPPYFLEFLDVL
Ga0211666_102398182	3300020392	Marine	MTYKELIKECKKRGFTLVDDNGKFSVLDKKGKEFSLNSEDMKKYKSGKEEVPPYFLEFLDVL
Ga0211516_101045742	3300020413	Marine	LGWLRQPIKNMTYKELIEECKKRGLTIVDDNGKFSVLDKKGKKHPLNSEDMKKYKSGKEEVPSYFLELLDVL
Ga0211557_100510551	3300020418	Marine	MTYKELIKECKKRGFTLVDDNGKFSVLDKKGKEFPLNSEDMKKYKSGKEEVPPYFLEF
Ga0211512_101529632	3300020419	Marine	LEWLRQPIKNMTYKELIEECKKRGLTIVDDNGKFSVLDKKGKKHPLNSEDMKKYKSGKEEVPSYFLELLDVL
Ga0211620_103457222	3300020424	Marine	MNYKDLIKECKKKGITIIDDNGKFSALDKNGKSYKLNNRDMKKYKAGKEEVPSYFIEFLDVL
Ga0211670_101166391	3300020434	Marine	MNYKDLIKECKKRSLTLVEENGKFSILDKKGKYHKINTSDMKKYKSGKEEVPGYFIEFLDSM
Ga0211545_104810922	3300020452	Marine	VKYKELINECKKRGLTIIDDNGKFSVLNKKGVSSKLNSSDMKLYKSGKEDVPDYFLEFLDTLN
Ga0211664_101689151	3300020455	Marine	MTYKELIKECKKRGFTLVDDNGKFSVLDKKGKEFSLNSEDMKKYKSGKEEVPPYFLEFL
Ga0211551_102489072	3300020456	Marine	MTYDELITECKKRGLTIVDDNGKFSVLDKNGKEFPINSEDMKNYKSGKEEVPPYFLEFLDVL
Ga0211579_100375233	3300020472	Marine	LGKLRQPVKNMTYKELIEECKKRGFTIIDDNGKFSVLDKKGKKHPLNSEDMKKYKSGKEEVPSYFLEFLNVM
Ga0211579_101053502	3300020472	Marine	VKYKELINECKKRGLTIIDDNGKFSVLNKKGVSSKLNSSDMKLYKSGKEDVPDYFLEFLDALN
Ga0211625_100100549	3300020473	Marine	VKYIELINECKKRGLTIIDDNGKFSVLDKKGVSSKLNSRDMKKYKSGKEDVPDYFLEFLDALN
Ga0211547_100537943	3300020474	Marine	LEWLRQPIKNMTYKELIEECKKRGFTIVDDNGKFSVLDKKGKKHPLNSEDMKKYKSGKEEVPSYFLELLDVL
Ga0211585_105581261	3300020477	Marine	MNYKDLVKECKKRGITIIGDNGKFSLLDKKGKEHKILNNIDMRKYQSGKEEVPDSFIELLDTL
Ga0211585_105673652	3300020477	Marine	MYKINNLNLIDKIIKLMNMNYKDLIKECKKRGITIIDDNGKFSALDKNGKSHKLNNRDMKKYKAGKKEVPNYFIEFLDVLK
Ga0206126_100613273	3300020595	Seawater	MTYEELIEECKKRGFTIVDDNGKFSVLDKKGKKSPLNSEDMKKYKSGKEEVPSYFLELLDVL
Ga0206677_100423982	3300021085	Seawater	MTYKELIEECKKRGFTIVDDNGKFSVLDKKGKKHPLNSEDMKKYKSGKEEVPSYFLEFLDVL
Ga0206683_101442542	3300021087	Seawater	MNYKDLIKECKKRGITIIGDNGKFSLLDKKGKEHKILNNRDMKKYQSGKEEVPDYFIELLDTL
(restricted) Ga0233426_100916912	3300022920	Seawater	LGWLRQPIKNMTYKELIEECKKRGFTIVDDNGKFSVLDKKGKKHPLNSEDMKKYKSGKEEVPSYFLELLDVL
(restricted) Ga0233438_100040132	3300024255	Seawater	LGWLRQPIKNMTYKELIEECKKRGFTIVDDNGKFSVLDKNGKKHPLNSEDMKKYKSGKEEVPSYFLELLDVL
(restricted) Ga0233443_13046612	3300024324	Seawater	IEECKKRGFTIVDDNGKFSVLDKKGKKHPLNSEDMKKYKSGKEEVPSYFLELLDVL
Ga0209304_10335715	3300025577	Pelagic Marine	KKRGFTIVDDNGKFSVLDKKGKKSPLNSEDMKKYKSGKEEVPSYFLELLDVL
Ga0209304_10401193	3300025577	Pelagic Marine	MTYEELIEECKKRGFTIVDDNGKFSVLDKKGKKSPLNSEDMKKYKSGKEEVPSYFLEL
Ga0209094_10988702	3300025594	Pelagic Marine	MTYEELIEECKKRGFALVDDNGKFSVLDKNGKKHPLNSEDMKKYKSGKEEVP
Ga0208878_10714262	3300026083	Marine	ECKKRGFTLVDDNGKFSVLDKKGKEFPLNSEDMKKYKSGKEEVPRYFLEFLDVL
Ga0208624_10195232	3300026093	Marine	MTYKELIKEYKKRGFTLVDDNGKFSVLDKKGKEFPLNSEDMKKYKSGKEEVPRYFLEFLDVL
Ga0208407_11006781	3300026257	Marine	MNYKDLIKECKKRGLTISDDNGKFSLIDKEGKKHGLNSQDMKLYKSGKEEVPNYFIEFLDVHK
Ga0208407_11852522	3300026257	Marine	MNYKDLIKECKKRGITIIDDNGKFSALDKNGKSHKLNNRDMKKYKAGKEEVPNYFIEFLDVL
Ga0208766_10390813	3300026269	Marine	MNYKDLIKECKKRGLTISDDNGKFSLIDKEGKKHGLNSQDMKLYQSGKEEVPNYFIEFLDIHK
Ga0208764_100194422	3300026321	Marine	MNYKDLVNECKKRGITIIGDNGKFSLLDKKGKEHKILNNIDMRKYQLGKEEVPDYFIELLDTL
Ga0208764_100237512	3300026321	Marine	MNYKDLIKECKKRGLTISDDNGKFSLIDKEGKKHGLNSKDMKLYKSGKEEVPNYFIEFLDVHK
Ga0209433_104091592	3300027774	Marine	KELIEECKKRGFTLVDDNGKFSVLDKKGKEFPLNSEDMKKYKSGKEEVPPYFLEFLDVL
Ga0209709_100584513	3300027779	Marine	MTYEELIEECKKRGFTLVDDNGKFSVLDKKGKKSPLNSEDMKKYKSGKEEVPSYFLELLDVL
Ga0209830_102797522	3300027791	Marine	MNYKDLIKECKKRGITIIDDNGKFSALDKNGKSHKLNNRDMKKYKAGKEEVPSYFIEFLDVL
Ga0209404_101320572	3300027906	Marine	MNYKDLIKECKKRGLTISDNNGKFSLIDKEGKKHGLNSQDMKLYKSGKEEVPNYFIEFLDVHK
Ga0315328_101903442	3300031757	Seawater	MNYKDLVNECKKRGITIIGDNGKFSLLDKKGKEHKILNNRDMKKYQSGKEEVPDYFIELLDTL
Ga0315326_100910182	3300031775	Seawater	MNYKDLVKECKKRGITIIGDNGKFSLLDKKGKEHKILNNRDMKKYQSGKEEVPDYFIELLDTL
Ga0315316_103375762	3300032011	Seawater	MNYKDLVNECKKRGITIIGDNGKFYLLDKKGKEHKILNNIDMKKYQSGKEEVPDYFIELLDTL
Ga0315334_106645713	3300032360	Seawater	MNYKDLIKECKKRGLTISDDNGKFSLIDKEGKEHELNSEDMKLYQSGKEEVPNYFIEFLDGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters