Metagenome / Metatranscriptome Family F094373

Overview

Basic Information

• Family ID: F094373
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 106
• Average Sequence Length: 46 residues
• Representative Sequence: MTVPLTPTVIVLGPSAADSNACTGTTLPINLSHRECRPFQPWRLTQSR
• Number of Associated Samples: 102
• Number of Associated Scaffolds: 106

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 50.00 %
• % of genes near scaffold ends (potentially truncated): 1.89 %
• % of genes from short scaffolds (< 2000 bps): 1.89 %
• Associated GOLD sequencing projects: 100
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (98.113 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.868 % of family members)
• Environment Ontology (ENVO): Unclassified (22.642 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (49.057 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: Yes
• Secondary Structure distribution:
  α-helix: 10.53%
  β-sheet: 0.00%
  Coil/Unstructured: 89.47%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF04986	Y2_Tnp	65.09
PF14319	Zn_Tnp_IS91	17.92
PF13495	Phage_int_SAM_4	6.60
PF00589	Phage_integrase	4.72

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
All Organisms	root	All Organisms	1.89 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
cellular organisms	root	All Organisms → cellular organisms	1.89 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.89 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.89 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.94 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300012209|Ga0137379_10949447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	765
3300031954|Ga0306926_11262560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	864

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.96%
Host-Associated	Host-Associated	16.04%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.30%
Plants	Host-Associated → Plants	16.04%
Aquatic	Environmental → Aquatic	5.66%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.55%
Freshwater	Environmental → Aquatic → Freshwater	1.89%
Marine	Environmental → Aquatic → Marine	1.89%
Sediment	Environmental → Aquatic → Sediment	1.89%
Floodplain	Environmental → Terrestrial → Floodplain	0.94%
Roots	Host-Associated → Plants → Roots	0.94%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.87%
Loam	Environmental → Terrestrial → Soil → Loam	8.49%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.89%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.94%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Subtype

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.25%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.49%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.77%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.89%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.94%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.94%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.66%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.89%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.89%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	0.94%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.94%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300002075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4	Host-Associated
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated
3300003997	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1	Environmental
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental
3300005105	Soil and rhizosphere microbial communities from Laval, Canada - mgHPC	Environmental
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental
3300006169	Termite nest microbial communities from Madurai, India	Environmental
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental
3300012506	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.old.040610	Host-Associated
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental
3300025604	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012 (SPAdes)	Environmental
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental
3300026341	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-A	Environmental
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental
3300031698	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-70	Environmental
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental
3300034148	Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17	Environmental
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24738J21930_100149283	3300002075	Corn Rhizosphere	MTVPLTPTVIVLGPSAADSNACTATALPINLSHPECRPLQLCRSTQSRRTA
JGI24738J21930_101005391	3300002075	Corn Rhizosphere	MTFPLTPTVIVLGLSPADSDACTGTALPIDLSDLECR
JGI25407J50210_100670452	3300003373	Tabebuia Heterophylla Rhizosphere	MTVPLAPPASVPGPSAAGSNACTSTALPINLLHHQCRLFP
Ga0055466_102676362	3300003997	Natural And Restored Wetlands	MTVPLTSTVIVPGPRTVGSNACNGTTLPINLSHRECRLFQPGRWTQSRRTALERRPQAQ
Ga0062384_1010273452	3300004082	Bog Forest Soil	MTVPLMSTVIVLGTSAADSNARTGPTLPIILSYRECRPFQPWRLTQSRHIAL
Ga0063356_1047729071	3300004463	Arabidopsis Thaliana Rhizosphere	MTVPLTPTVIVLGPSAADSNACTATALPINLSHRECRPLQLCRSTQS
Ga0066395_107146162	3300004633	Tropical Forest Soil	MTSPLTPTVIVLGPSAADSNACTDTALPINPSNLQCRLFSPRD*
Ga0066812_10084502	3300005105	Soil	MTFPLTPTVIVLGLSPADSDACAGTARPINRSNLECRPFLP
Ga0066677_108411431	3300005171	Soil	MTVPLTPTVIVLGPSAADSNACTGTTLPINLSHRECRPFQPWRLTQSR
Ga0070687_1014545332	3300005343	Switchgrass Rhizosphere	MTVALTSTIIMLGPRAADSNACTGTALPIDLSHRQCHPFQLWRLTQS
Ga0070673_1004529452	3300005364	Switchgrass Rhizosphere	MTFPLTPTVIVLGLSPADSDACAGTARPINRSNLECRPFL
Ga0066681_105874492	3300005451	Soil	MTCPLTPTVIVLAPSAADSNARIGTALPINLSSLECRPFPPRR*
Ga0066681_105909632	3300005451	Soil	MTVPLTSTIIMLGPRADSNACTGTALPINLSHRECHPFQLWRLTQSC
Ga0070706_1001309801	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPLTSPIVMLGPRAADSNACTGTALPINLSHREYHPFQLWRLTQSWRTALEHRQC
Ga0070704_1014261201	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLT
Ga0066701_107592692	3300005552	Soil	MTFPLTPTVIVLSPSTADSNACTATALPINLSHREYQPFQLWRLTQSWRTALEHRQCARTNR
Ga0066661_105302642	3300005554	Soil	MTVPLTSTIIMLGPRAADSNACTGTALPINLSHRE
Ga0068857_1017603591	3300005577	Corn Rhizosphere	MTVPLTPTVIVLGPSAADSNARTGTALPIDLSDRECRPFSPWRLTQSRRTPLERR
Ga0066706_106066321	3300005598	Soil	MTFPLTSTVIMLGPSAADAMPAPGTALPINLTNLE
Ga0082029_10925981	3300006169	Termite Nest	MTVPLTPTVIVLGPSAADSDARTGTALPINLSHRECRPLQSWD*
Ga0075422_100696192	3300006196	Populus Rhizosphere	MTVPLTPTVIVLGPSAADSNACTATALPINLSHPE
Ga0079222_106889572	3300006755	Agricultural Soil	MTVLLTSTVVVLGPSAADNNACAGTVLPINLFHRECRPLQPWKLTQSQRTALGRRPDL
Ga0075421_1008398682	3300006845	Populus Rhizosphere	MTVPPTSTIIMLGPRAADSNACTGTALPINLSHREY
Ga0068865_1004219231	3300006881	Miscanthus Rhizosphere	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQP
Ga0111539_107149402	3300009094	Populus Rhizosphere	MTVPLTPTVIALSPSAADSYARTGTALPIYLSRRQSR
Ga0066709_1045473191	3300009137	Grasslands Soil	MTFPLTPTVIVLSPSTADSNACTATALPINLSHREYQPFQLW
Ga0126307_100802201	3300009789	Serpentine Soil	MTCPLTPTVIVLAPSAADSNACIGTALPINLSSLECRPFPPRR*
Ga0126315_103086893	3300010038	Serpentine Soil	MTVPLTSTVSLPSTSAADSNACTGTTLPSNLAHRE
Ga0134064_101921222	3300010325	Grasslands Soil	MTVLLTPTVIVLGPSAADSNACTGTTLPINLSHRECRPFQPWRLTQSRRTALER
Ga0134063_105022431	3300010335	Grasslands Soil	MTVPLTSTIIMLGPRADSNACTGTALPINLSHRECHP
Ga0126370_112282812	3300010358	Tropical Forest Soil	MTFSLTPTVIVFGPRAADSNACTATALPINLSHREYQPFQLWRLTQSWRTALEH
Ga0126372_101326463	3300010360	Tropical Forest Soil	MTVPLTPTVIVLGPSAADSDACTGTALLINLSHRECRPLQSCRLTQSRRAALER
Ga0126381_1006144241	3300010376	Tropical Forest Soil	MTFSLTPTVIVFGPRAADSNACTATALPINLSHREYQPFQLWRLTQS
Ga0134124_121155232	3300010397	Terrestrial Soil	MIIPLTSTVIVLDTSAADSNACIGIALAINLSHRRDRPF
Ga0126350_104788393	3300010880	Boreal Forest Soil	MTVPLSTVIGLDTSAADSNACTGRTLPIILSDRECGPFQPGRLTQ
Ga0105246_115654341	3300011119	Miscanthus Rhizosphere	MTVPLTPTVIVLGPSAADSNACTATALPINLSHPECRPLQL
Ga0137376_110635401	3300012208	Vadose Zone Soil	MTFPLTPTVIVLGLSPADSDACTSIALPINLSNLECRPFLP
Ga0137379_109494471	3300012209	Vadose Zone Soil	MTVPLTSTIIMLSPRAADSNACTGTALPINLCHREYHPFQL
Ga0137377_107349491	3300012211	Vadose Zone Soil	MTVSLTSTMIRLGPSAADSNPCTGTALPINLSHRECRPFQTCR
Ga0137385_101957483	3300012359	Vadose Zone Soil	MTVLLTSTVVVLGPSAADNNACAGTVLPINLFHRECRPLQPWKLTQ
Ga0157324_10168891	3300012506	Arabidopsis Rhizosphere	MTFPLTPTVIVLGLSFADSNACTATALLINLSDLECRPFLSR
Ga0157296_103973321	3300012905	Soil	MTVPLTPTVIVFGSSTADSNACTGTALPINLSHRECRPLQLCRSTQSRRTALDRRP
Ga0126375_110959482	3300012948	Tropical Forest Soil	MTVPLTPTVIVFGPSAADSDACTGTALLINLAHRECRPLQSCRLTQSRRAAL
Ga0173480_106364361	3300015200	Soil	MTVPLTPTVIVLGPSAADSNACTATALPINLSHRECRPLQLCRST
Ga0132255_1003336823	3300015374	Arabidopsis Rhizosphere	MTVPLTPTVIVLGPSAADSNACTATALPINLSHPECRPLQLCRSTQSRRTALDRRPRA
Ga0182041_122373152	3300016294	Soil	MTLPLILTVIVLGLSPAHSDASTGTARPINRSNLQC
Ga0182033_100997683	3300016319	Soil	MTFPLTPTVIVLGLSPADNDDCTGTARPINRSNVE
Ga0182040_118844371	3300016387	Soil	MMFPLTLTVIVLGLSPTGSDACTGTPLPINFSNLGCRPFLPRTLT
Ga0184608_105216852	3300018028	Groundwater Sediment	MTFPLTPTVIVLGLSPADSDACTRTALPIDLSDLECRPF
Ga0184609_101119702	3300018076	Groundwater Sediment	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLTQSWR
Ga0190265_101659113	3300018422	Soil	MTVPLRSTAIVLGSSAADSNVCTGTTLPTKLSHRECRPFQRQRLT
Ga0066669_116710141	3300018482	Grasslands Soil	MTCPLTPTVIVLAPSAADSNARIGTALPINLSSLECRPFPPRR
Ga0193703_10638952	3300019876	Soil	MTILLTSTVVVLGPSAADNNACAGTMLPIKLFHRECHPLQP
Ga0193747_10249243	3300019885	Soil	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLTQSWRTALEH
Ga0210401_106360712	3300020583	Soil	MTVPLTPTVIVLNLSAADSNACIGSALPIHLTHRECRPFQPWRLPQSR
Ga0210387_116338311	3300021405	Soil	MTVPLTPTVIVLNLSAADSNACIGSALPIHLSHRECRPFQPWRLPQSRRTAVDPDPTRK
Ga0210386_116094162	3300021406	Soil	MTVPLTSTIILLGPRAADSNACTGTALPINLSHREYHPFQLWRLTQS
Ga0210410_101931453	3300021479	Soil	MTVPLTPTVIVLNLSAADSNACIGSALPIHLSHRNAARSSP
Ga0207930_11386232	3300025604	Arctic Peat Soil	MTVPLTPTVIVLNLSAADSNACIGSALPIHLSHRECRPFQPWRLPQSRRTA
Ga0207692_108119811	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLTQSWRTALEQRQC
Ga0207657_111691912	3300025919	Corn Rhizosphere	MTVPLTPTVIVLGPSAADSNACTATALPINLSHPECRPLQLCRSTQSRRTALDRRP
Ga0207651_108885041	3300025960	Switchgrass Rhizosphere	MTVPLTPTVIVLGPSAADSNACTATALPINLSHPECRPLQLCRSTQSRRTALDRRPRAQINRLP
Ga0207648_122897242	3300026089	Miscanthus Rhizosphere	MTFPLTPTVIVLGLSPADSDACAGTARPINRSNLECRPFLPRRL
Ga0209131_11058641	3300026320	Grasslands Soil	MTFPLTLTVIVLGLSPADSDASTGTARPINRSNLQCR
Ga0209266_10415741	3300026327	Soil	MTVPLTSTIIMLGPRAADSNACTGTALPINLSHRECHPFQL
Ga0257151_10192822	3300026341	Soil	MTVPLTSTIIMLGPRAADSNACTGTALPINLSHREYQPFQLWRLT
Ga0209421_10653302	3300027432	Forest Soil	MTAPLTPTVIVLDLSPADSNACTGTALPINLSHRECRPFPAL
Ga0209422_11358671	3300027629	Forest Soil	MTVPLTPTVIVLNLSAADSNACIGPALPIHLSLRECRPFQPWRL
Ga0209625_10040134	3300027635	Forest Soil	MTCPLTLTVIVLGPSAADSNVCTATALPINLSNLQRRPFPLWRLT
Ga0209446_10664321	3300027698	Bog Forest Soil	MTVPLMSTVIVLGTSAADSNARTGPTLPIILSYRE
Ga0209283_109952821	3300027875	Vadose Zone Soil	MTVPLTSTIIMLGPRAADSNACTGTALPINLSHRECHPFQLW
Ga0307303_101468172	3300028713	Soil	MTILLTSTVVVLGPSAADNNACAGTMLPIKLFHRECHPLQPWKLTQI
Ga0307315_100101713	3300028721	Soil	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLTQSW
Ga0307320_100217613	3300028771	Soil	MTFPLTPTVIVLGLSPADSDACPGTALPINLSDLECRPFLP
Ga0307306_100207831	3300028782	Soil	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLTQSWRT
Ga0307310_103516851	3300028824	Soil	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLTQSWRTALEQ
Ga0318534_107930851	3300031544	Soil	MTFPLTPTVIVLGLSPADSDACTVTPLPINFSNLGCRP
Ga0318528_104261962	3300031561	Soil	MTVPLTPTVIVLGLNAADRNSCTGTALPINLSHRECGPFQPASLTQSRRTLSSTDI
Ga0315537_12850792	3300031698	Salt Marsh Sediment	MTVLLMSTVIVLAPSVADSNACTGTALPINLFNRECRSFQSWRLTQSPC
Ga0310686_1125662321	3300031708	Soil	MTVPLRSTIIMLGPRAADSHACTGTALPINLSHREYLPF
Ga0306917_114565062	3300031719	Soil	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHRQYQPFQLWRLTQSWRTALE
Ga0318500_105145462	3300031724	Soil	MTVLLTSTVVVLGPSAADNNACAGTVLPINLFHRECRPLQPWKLTQSQ
Ga0307468_1005570701	3300031740	Hardwood Forest Soil	MTFPLTPNVIVLSLSPADSDACTGTARPINRSNLEC
Ga0318508_10076861	3300031780	Soil	MTFSLTPTVIVLGPRAADSNACTATALPINLSHREYQPFQLWRLTQSWRTALE
Ga0318523_100391521	3300031798	Soil	MTVLLTSTVVVLGPSAADNNACAGTVLPINLFHRECRPLQPWKLTQSQRTALGRR
Ga0318564_101492231	3300031831	Soil	MTFSLTPTVIVFGPRAADSNACTATALPINLSHREYQPF
Ga0318517_104299551	3300031835	Soil	MTVLLTSTVVVLGPSAADNNACAGTVLPINLFHRECRPLQPWKL
Ga0310892_111839091	3300031858	Soil	MTVPLTSTIIMLGPRAADSNACTGTALPIDLSHRQCHPFQLWRLT
Ga0306919_112258522	3300031879	Soil	MTVPLTPTVIVLGLNAADRNACTGTALPINLSHRECGPFQPGSWTQSPR
Ga0310893_102632832	3300031892	Soil	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLTQSWRTAFQVKRT
Ga0318536_104969941	3300031893	Soil	MTVPLTPTVIVLGLNAADRNACTGTALPINLSHRECGPFQPGSWT
Ga0310912_101028041	3300031941	Soil	MTAPLTSTVIVLGTSAADSNACIGRTSPIILSDRECGP
Ga0306926_112625603	3300031954	Soil	MMFPLTLTVIVLGLSPTGSDACTGTARPINRSNLECRLFL
Ga0306926_121147281	3300031954	Soil	MTFPLTPTVIVLGLSPADSDACTGTPLPINFSNLGC
Ga0318530_102441441	3300031959	Soil	MTVLLTSTVVVLGPSAADNNACAGTVLPINLFHRECRPLQPWKLTQSQRTALGRRPRAQKNR
Ga0306922_105880061	3300032001	Soil	MTLPLTPTVIVLGLNAADRNSCTGTALPINLSHRECGPFQPASLTQSRR
Ga0306922_121816761	3300032001	Soil	MTIPLMLIVIVLSLSPVDSDARTGPARPINRSNLQCRPFLPRR
Ga0318569_105048271	3300032010	Soil	MTFPLTPTVIVLGLSPADSDACTGTPLPINFSNLGCRPFLL
Ga0318505_101295281	3300032060	Soil	MTFPLTPTVIVLGLSPADSDACTVTPLPINFSNLGCRPFLPRTLTQL
Ga0318510_105057301	3300032064	Soil	MTFPLTPTVIVLGLSPADSDACTGTPLPINFSNLGCRPFLLRT
Ga0318524_101022261	3300032067	Soil	MTFSLTPTVIVLGPRAADSNACTATALPINLSHREYQPFQLWRLTQSWRTHRQCARTNRL
Ga0307472_1013496002	3300032205	Hardwood Forest Soil	MTILLTSTVVVLGPSAADNNACAGTMLPIKLFHRECHPLQPWKLTQIAAHS
Ga0310914_106387252	3300033289	Soil	MTAPLTSTVIVLGTSAADSNACIGRTSPIILSDRECGPFQ
Ga0247830_104364031	3300033551	Soil	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLW
Ga0364927_0245092_1_198	3300034148	Sediment	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLTQSWRTALEQRQCARTNRLPLA
Ga0373958_0012307_1326_1460	3300034819	Rhizosphere Soil	MTVALTSTIIMLGPRAADSNACTGTALPIDLSHRQCHPFQLWRLT