Metagenome Family F094366

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094366
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	68 residues
Representative Sequence	MSDSASVIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA
Number of Associated Samples	76
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.47 %
% of genes near scaffold ends (potentially truncated)	23.58 %
% of genes from short scaffolds (< 2000 bps)	93.40 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.038 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (18.868 % of family members)
Environment Ontology (ENVO)	Unclassified (31.132 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.95% β-sheet: 0.00% Coil/Unstructured: 81.05%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01253	SUI1	21.70
PF02594	DUF167	19.81
PF00440	TetR_N	9.43
PF03992	ABM	1.89
PF02502	LacAB_rpiB	0.94
PF02861	Clp_N	0.94
PF00254	FKBP_C	0.94
PF04229	GrpB	0.94
PF00581	Rhodanese	0.94
PF03706	LPG_synthase_TM	0.94
PF13248	zf-ribbon_3	0.94
PF04542	Sigma70_r2	0.94
PF00144	Beta-lactamase	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0023	Translation initiation factor 1 (eIF-1/SUI1)	Translation, ribosomal structure and biogenesis [J]	21.70
COG1872	Uncharacterized conserved protein YggU, UPF0235/DUF167 family	Function unknown [S]	19.81
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.94
COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.94
COG0698	Ribose 5-phosphate isomerase RpiB	Carbohydrate transport and metabolism [G]	0.94
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.94
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.94
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.94
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.94
COG2320	GrpB domain, predicted nucleotidyltransferase, UPF0157 family	General function prediction only [R]	0.94
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.94
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.04 %
Unclassified	root	N/A	33.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.04 %
Unclassified	root	N/A	33.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.04 %
Unclassified	root	N/A	33.96 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	60.38 %
Unclassified	root	N/A	33.96 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	59.43 %
Unclassified	root	N/A	33.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.96 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	27.36 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.96 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	27.36 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.94 %
Nakamurellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.96 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	3.77 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	2.83 %
Nakamurellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae	0.94 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.94 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.96 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	3.77 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2.83 %
Nakamurella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	0.94 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.94 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.96 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	3.77 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2.83 %
Nakamurella leprariae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella leprariae	0.94 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.94 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_119561875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	720	Open in IMG/M
3300004480\|Ga0062592_100872387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	807	Open in IMG/M
3300005327\|Ga0070658_11658897	Not Available	554	Open in IMG/M
3300005329\|Ga0070683_100836494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	883	Open in IMG/M
3300005334\|Ga0068869_101644572	Not Available	572	Open in IMG/M
3300005337\|Ga0070682_101664645	Not Available	553	Open in IMG/M
3300005338\|Ga0068868_100696389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	909	Open in IMG/M
3300005345\|Ga0070692_11406996	Not Available	504	Open in IMG/M
3300005347\|Ga0070668_100096503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2336	Open in IMG/M
3300005441\|Ga0070700_100111044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1823	Open in IMG/M
3300005459\|Ga0068867_100290660	Not Available	1344	Open in IMG/M
3300005535\|Ga0070684_101055798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	763	Open in IMG/M
3300005577\|Ga0068857_101908735	Not Available	582	Open in IMG/M
3300005719\|Ga0068861_100280441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1435	Open in IMG/M
3300006169\|Ga0082029_1305556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3595	Open in IMG/M
3300006844\|Ga0075428_101500935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	706	Open in IMG/M
3300006844\|Ga0075428_102187967	Not Available	571	Open in IMG/M
3300006846\|Ga0075430_101689762	Not Available	519	Open in IMG/M
3300006847\|Ga0075431_101416954	Not Available	654	Open in IMG/M
3300006853\|Ga0075420_100794868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	815	Open in IMG/M
3300006880\|Ga0075429_101989423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	503	Open in IMG/M
3300006918\|Ga0079216_10543534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	781	Open in IMG/M
3300006918\|Ga0079216_10947903	Not Available	656	Open in IMG/M
3300006954\|Ga0079219_11181972	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300006954\|Ga0079219_11942102	Not Available	557	Open in IMG/M
3300007004\|Ga0079218_12391184	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300009094\|Ga0111539_10457239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1487	Open in IMG/M
3300009100\|Ga0075418_12387175	Not Available	577	Open in IMG/M
3300009147\|Ga0114129_12953391	Not Available	561	Open in IMG/M
3300009148\|Ga0105243_10156383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1961	Open in IMG/M
3300009789\|Ga0126307_10185170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1670	Open in IMG/M
3300009789\|Ga0126307_10236635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1467	Open in IMG/M
3300009789\|Ga0126307_10679985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	830	Open in IMG/M
3300009789\|Ga0126307_10844250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	739	Open in IMG/M
3300009789\|Ga0126307_11026721	Not Available	666	Open in IMG/M
3300009840\|Ga0126313_10072207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2483	Open in IMG/M
3300009840\|Ga0126313_10156474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1725	Open in IMG/M
3300009840\|Ga0126313_10591506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	893	Open in IMG/M
3300009840\|Ga0126313_10656589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	847	Open in IMG/M
3300009840\|Ga0126313_11191292	Not Available	628	Open in IMG/M
3300010038\|Ga0126315_10001979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	8320	Open in IMG/M
3300010038\|Ga0126315_10485950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	786	Open in IMG/M
3300010039\|Ga0126309_10316979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	907	Open in IMG/M
3300010039\|Ga0126309_10458458	Not Available	776	Open in IMG/M
3300010039\|Ga0126309_10679916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	658	Open in IMG/M
3300010039\|Ga0126309_10772388	Not Available	624	Open in IMG/M
3300010044\|Ga0126310_10359661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1024	Open in IMG/M
3300010045\|Ga0126311_10018324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4102	Open in IMG/M
3300010045\|Ga0126311_11258587	Not Available	614	Open in IMG/M
3300010166\|Ga0126306_10115975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1954	Open in IMG/M
3300010399\|Ga0134127_12694298	Not Available	577	Open in IMG/M
3300011119\|Ga0105246_10335567	Not Available	1233	Open in IMG/M
3300012212\|Ga0150985_103492591	Not Available	624	Open in IMG/M
3300012212\|Ga0150985_118157642	Not Available	674	Open in IMG/M
3300012902\|Ga0157291_10323945	Not Available	543	Open in IMG/M
3300013296\|Ga0157374_12179463	Not Available	581	Open in IMG/M
3300014325\|Ga0163163_12691331	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300014326\|Ga0157380_10177624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1867	Open in IMG/M
3300015372\|Ga0132256_101223813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	864	Open in IMG/M
3300015373\|Ga0132257_102324764	Not Available	695	Open in IMG/M
3300017792\|Ga0163161_11374232	Not Available	616	Open in IMG/M
3300018422\|Ga0190265_10176319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2123	Open in IMG/M
3300018422\|Ga0190265_10300875	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1674	Open in IMG/M
3300018422\|Ga0190265_11180717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	884	Open in IMG/M
3300018429\|Ga0190272_10262291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1307	Open in IMG/M
3300018429\|Ga0190272_10774888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	878	Open in IMG/M
3300018429\|Ga0190272_10900705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	830	Open in IMG/M
3300018432\|Ga0190275_10183237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1964	Open in IMG/M
3300018432\|Ga0190275_10592703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1155	Open in IMG/M
3300018466\|Ga0190268_11194133	Not Available	630	Open in IMG/M
3300018469\|Ga0190270_10371955	Not Available	1309	Open in IMG/M
3300018476\|Ga0190274_10959957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	926	Open in IMG/M
3300018476\|Ga0190274_11688167	Not Available	727	Open in IMG/M
3300018920\|Ga0190273_11849100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	552	Open in IMG/M
3300019356\|Ga0173481_10338813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	714	Open in IMG/M
3300025901\|Ga0207688_10113277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1576	Open in IMG/M
3300025908\|Ga0207643_10169503	Not Available	1317	Open in IMG/M
3300025909\|Ga0207705_10490568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	954	Open in IMG/M
3300025926\|Ga0207659_11542325	Not Available	568	Open in IMG/M
3300025935\|Ga0207709_10235412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1329	Open in IMG/M
3300025940\|Ga0207691_11055262	Not Available	677	Open in IMG/M
3300026023\|Ga0207677_10804995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella leprariae	841	Open in IMG/M
3300026121\|Ga0207683_10310788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1443	Open in IMG/M
3300027907\|Ga0207428_10264665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1280	Open in IMG/M
3300028578\|Ga0272482_10228664	Not Available	580	Open in IMG/M
3300028587\|Ga0247828_10061969	All Organisms → cellular organisms → Bacteria	1660	Open in IMG/M
3300028587\|Ga0247828_10323670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	860	Open in IMG/M
3300028596\|Ga0247821_11283798	Not Available	500	Open in IMG/M
3300028812\|Ga0247825_10110221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1868	Open in IMG/M
3300028889\|Ga0247827_10423125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	815	Open in IMG/M
3300030336\|Ga0247826_10052402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	2285	Open in IMG/M
3300030336\|Ga0247826_10561123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	871	Open in IMG/M
3300031229\|Ga0299913_10483203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1225	Open in IMG/M
3300031731\|Ga0307405_10527827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	951	Open in IMG/M
3300031852\|Ga0307410_10512261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	989	Open in IMG/M
3300031903\|Ga0307407_10708335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	759	Open in IMG/M
3300031995\|Ga0307409_100388687	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300031995\|Ga0307409_100908214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	895	Open in IMG/M
3300031995\|Ga0307409_101154456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	797	Open in IMG/M
3300031995\|Ga0307409_101200050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	782	Open in IMG/M
3300032002\|Ga0307416_102025172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	678	Open in IMG/M
3300032002\|Ga0307416_102451264	Not Available	621	Open in IMG/M
3300032080\|Ga0326721_10075767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1542	Open in IMG/M
3300032080\|Ga0326721_10202476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1049	Open in IMG/M
3300032126\|Ga0307415_102385301	Not Available	520	Open in IMG/M
3300034268\|Ga0372943_0150701	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.55%
Host-Associated	Host-Associated	42.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.55%
Plants	Host-Associated → Plants	42.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.26%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	23.58%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.49%
Loam	Environmental → Terrestrial → Soil → Loam	5.66%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.83%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	23.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.49%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.66%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.83%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	18.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.04%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	9.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028578	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1195618752	3300002568	Soil	MIRLSVSAVDEAALEARIAALTVAFPAGTQVSVARGMVFDRHGMPPSFAALLCAVSP*
Ga0062592_1008723873	3300004480	Soil	MMQAMGHSSDSIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAA
Ga0070658_116588971	3300005327	Corn Rhizosphere	MSDSAPAIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAGAA*
Ga0070683_1008364943	3300005329	Corn Rhizosphere	MSDSASAIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAGAA*
Ga0068869_1016445721	3300005334	Miscanthus Rhizosphere	MSDSASAIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAEAA*
Ga0070682_1016646451	3300005337	Corn Rhizosphere	ASAIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAGAA*
Ga0068868_1006963892	3300005338	Miscanthus Rhizosphere	MSDSAPAIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAEAA*
Ga0070692_114069962	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSDPASIIRLSVSGADDQDLDSRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSCAALLCATPPA*
Ga0070668_1000965035	3300005347	Switchgrass Rhizosphere	MMQAMGHSSDSIRLSVSAADEQALDSRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA*
Ga0070700_1001110442	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MMQAMGHSSDSIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA*
Ga0068867_1002906602	3300005459	Miscanthus Rhizosphere	MMQAMGHSSDSIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQAA*
Ga0070684_1010557981	3300005535	Corn Rhizosphere	MMQAMGHSSDSIRLSVSAADEQALDMRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA*
Ga0068857_1019087353	3300005577	Corn Rhizosphere	CRSCRAMSDSASAIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAGAA*
Ga0068861_1002804413	3300005719	Switchgrass Rhizosphere	MMQAMGHSADSIRLSVSAVDDQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA*
Ga0082029_13055564	3300006169	Termite Nest	MSDSASVIRLSVSAADEQALDTRIAALSAAFPVGTLVTVTRGTVFNRHGMPPSAAALLCATPPAQAA*
Ga0075428_1015009352	3300006844	Populus Rhizosphere	MSDPASIIRLSVSGADEQDLDSRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSCAALLCATPPAQAA*
Ga0075428_1021879671	3300006844	Populus Rhizosphere	RVQARRTAVGPVSRVSAGSPGSADHAGHMSDSASVIRLSVSAADEQALDTRIAVLSAAFPAGTLVTVTRGTVFNRHGMPPSPAALLCATPPVQAA*
Ga0075430_1016897621	3300006846	Populus Rhizosphere	MSDSSAIRLSVSAVDERALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCA
Ga0075431_1014169542	3300006847	Populus Rhizosphere	MSHSDSVIRLSVSAVDEQALDTRIAMLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPVQAA*
Ga0075420_1007948682	3300006853	Populus Rhizosphere	MSDSASVIRLSVSAADERALDTRIAVLSAAFPVGTLVTVARGTVFNRHGVPPSPAALVCATPPAQAA*
Ga0075429_1019894232	3300006880	Populus Rhizosphere	GGWTAVQSFCGNGRKCRSCRAMSDSSIIRLSVSGADEQDLDSRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSCAALLCATPPAQAA*
Ga0079216_105435342	3300006918	Agricultural Soil	MSDSASVIRLSLSAADEQALDTRIAVLRAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTP*
Ga0079216_109479032	3300006918	Agricultural Soil	MSDFASVIRLSVSAADEQALDTRIAALRAGFPAGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQAA*
Ga0079219_111819721	3300006954	Agricultural Soil	RSCRAMSDSASAIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAEAA*
Ga0079219_119421021	3300006954	Agricultural Soil	MSDFASVIRLSVSAADEQALDTRIAVLSAAFPAGTRVTVTRGTVFNRHGMPPSPAALLCATPPAEAA*
Ga0079218_123911841	3300007004	Agricultural Soil	AGSADHAGHMSDSASVIRLSLSAADEQALDTRIAVLRAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPARTA*
Ga0111539_104572393	3300009094	Populus Rhizosphere	MMQAMGHSSDSIRLSVSAVDEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA*
Ga0075418_123871751	3300009100	Populus Rhizosphere	MSDSASAIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPVQAA*
Ga0114129_129533912	3300009147	Populus Rhizosphere	MTDSSSIRLSVSGADEQDLDSRIAMLSAAFPVGTLVTVTRGTVFNRHGMPPSCAALLCATPPAQAA*
Ga0105243_101563833	3300009148	Miscanthus Rhizosphere	MSHSHDSIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA*
Ga0126307_101851704	3300009789	Serpentine Soil	MTDSAASIIRLSVSGADEQDLDSRIAGLSAAFPVGTLVTVARGTVFNRHGMPPSCAALLCATPPAQAV*
Ga0126307_102366353	3300009789	Serpentine Soil	MADHRAMTIRVSVSAADERDLETRIAWLTAAFPSGTEVSVTRGTVFNRHGMPPTPAALLCAVQPVAAA*
Ga0126307_106799851	3300009789	Serpentine Soil	MSDSASIRLSVSGADEQDLEGRIAALSAAFPVGSLVTVTRGTVFNRHGMPPSPAAL
Ga0126307_108442502	3300009789	Serpentine Soil	MSDSASIIRLSLSGADDSDLDSRIAVLSAAFPVGTLVTVTGGTVFNRHGMPPSPAALLCATPPAEAG*
Ga0126307_110267212	3300009789	Serpentine Soil	MSDSASVIRLSVSAADEQALDSRIAALSAAFPVGTRVTVTRGTVFNRHGMPPTAAALLCATRPAQAV*
Ga0126313_100722074	3300009840	Serpentine Soil	MSDSASVIRLSVSAADEQALDRRIAVLSAAFPVGTLVTVTRGTVFDRHGMPPSRAALLCATPPARAA*
Ga0126313_101564743	3300009840	Serpentine Soil	MSDIASVIRLSVSAADEQALDSRIAALSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQAA*
Ga0126313_105915062	3300009840	Serpentine Soil	MSDSDSVIRISLSAADERALDRRIAVLSAAFPVGTLVTVSRGTVFNRHGMPPSPAALLCATPPAATA*
Ga0126313_106565892	3300009840	Serpentine Soil	MSDSASIRLSVSGTDEQDLEGRIAALSAAFPVGSLVTVTRGTVFNRHGMPPSPAALLCATPPAVA*
Ga0126313_111912921	3300009840	Serpentine Soil	MSDSASIRLSVSGADEQDLEGRIAALSAAFPVGSLVTVTRGTVFNRHGMPPSPAALLCATPPAAA*
Ga0126315_1000197911	3300010038	Serpentine Soil	MSDSASVIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFDRHGMPPSRAALLCATPPARAA*
Ga0126315_104859502	3300010038	Serpentine Soil	MSDSASVIRLSVSAADEQTLDARIAVLSAAFPVGTLVMVTRGTVFNRHGMPPSPAALLCATPPPQTA*
Ga0126309_103169792	3300010039	Serpentine Soil	MSDIASVIRLSVSAADEQALDSRIAALSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATTPAQAA*
Ga0126309_104584581	3300010039	Serpentine Soil	MSDSTSIRLSVSGTDEQDLEGRIAALSAAFPVGSLVTVTRGMVFNRHGMPPSPAALLCATPPAVA*
Ga0126309_106799162	3300010039	Serpentine Soil	MSDFVSIRLSVSGADEQDLDSRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSCAALLCATPPAEAA*
Ga0126309_107723882	3300010039	Serpentine Soil	MSHSASSIRLSVSGADEQDLDSRIAVLSAAFPAGTLVTVTRGTVFNRHGMPPSPAALLFATPPAEAA*
Ga0126310_103596613	3300010044	Serpentine Soil	MSGSASIIRLSLSGADDSDLDSRIAVLSAAFPVGTLVTVTGGTVFNRHGMPPIPAALLCATPPAEAG*
Ga0126311_100183247	3300010045	Serpentine Soil	MSDSASIIRLSLSGADDSDLDSRIAVLSAAFPVGTLVTVTGGTVFNRHGMPPRPAALLCATPPAEAG*
Ga0126311_112585871	3300010045	Serpentine Soil	MSDSASIRLSVSGTDEQDLEGRIAALSAAFPVGSLVTVTRGTVFNRHGMPPSPAALLCATPPAAA*
Ga0126306_101159753	3300010166	Serpentine Soil	MSDSASIRLSVSGADEHDLEGRIAALSAAFPVGSLVTVTRGTVFNRHGMPPSPAALLCATPPAAAA*
Ga0134127_126942983	3300010399	Terrestrial Soil	VAAADEADLEVRIAWLTSSFPVGTEVTVIRGTVFNRHGMPPSPAALLCATPPAGAA*
Ga0105246_103355673	3300011119	Miscanthus Rhizosphere	MSDSASIIRLSVSGADEQDLDSRIAVLSAAFPVGTLVTVTRGTVFNRHGMPSSPAALLCATPPAEAA*
Ga0150985_1034925911	3300012212	Avena Fatua Rhizosphere	MSDSVCIRLSLSAPDEQALDTRIAVLSAAFPAGTLVTVTRGTVFNRHGMPPSPAALLFATPPADAA*
Ga0150985_1181576422	3300012212	Avena Fatua Rhizosphere	MSESACIRLSLSAPDEQALDTRIAVLSAAFPVGTLVTVPRGPVFNRHGMPPSPAALLFATPPADAA*
Ga0157291_103239452	3300012902	Soil	MMQAMGHSSDSIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCA
Ga0157374_121794631	3300013296	Miscanthus Rhizosphere	PPAIRLSVAAADEQSLDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAGAA*
Ga0163163_126913313	3300014325	Switchgrass Rhizosphere	VSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAEAA*
Ga0157380_101776244	3300014326	Switchgrass Rhizosphere	MSHSPDSIRLSVSAADDQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA*
Ga0132256_1012238133	3300015372	Arabidopsis Rhizosphere	MSDSASAIRLSVSAADEQALDTRIAVLSAAFPVGPLVTVTRGTVFNRHGMPPSPAALLCATPPAGAA*
Ga0132257_1023247641	3300015373	Arabidopsis Rhizosphere	MSDSASVIRLSVSAADDRALDTRIAVLSAAFPAGTLVTVTRGTVFNRHGMPPSPAALLCATPPDGAA*
Ga0163161_113742321	3300017792	Switchgrass Rhizosphere	RKVPMMQAMGHSSDSIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA
Ga0190265_101763194	3300018422	Soil	MSDSASVIRLSLSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAEVA
Ga0190265_103008752	3300018422	Soil	VTDHEVMQAIPTTIRLSLAAADDHALDTLIARLSAGFPSGTEVTVARGTVFNRHGMPPTAAALLCAAPGG
Ga0190265_111807172	3300018422	Soil	MSDSASVIRLSLSAADEQALDTRIAVLRAALPAGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA
Ga0190272_102622914	3300018429	Soil	MSDSASIIRLSVAGADEQDLEGRIAVLRAAFPAGTLVTVARGTVFNRHGMPPSAAALLCATPPAAA
Ga0190272_107748883	3300018429	Soil	MATIRVSVSAADERDLEVRIAWLTSAFPMGTEVTVVRGTVFNRHGMPPSPAALLCAVPPGIV
Ga0190272_109007051	3300018429	Soil	MSDSASIRLSVSGADEQDIDSRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSCAALLCATPPAEAV
Ga0190275_101832374	3300018432	Soil	MSDSASVIRLSLSAADEQALDTRIAVLRAAFPAGTLVTVTRGTVFNRHGMPPSSAALLCATPPAQTA
Ga0190275_105927032	3300018432	Soil	MSDIASVIRLSVSAADEQALDSRIAALSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQAA
Ga0190268_111941331	3300018466	Soil	RVSADGSGSADHAGHMTDSASIRLSLSAVDERALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA
Ga0190270_103719553	3300018469	Soil	MMQAMGHSPDSIRLSVSAVDDQALDTQIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPVQAA
Ga0190274_109599573	3300018476	Soil	MMQAMGDSTDSIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQAA
Ga0190274_116881671	3300018476	Soil	SADHAGHMSDIASVIRLSVSAADEQALDSRIAALSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQAA
Ga0190273_118491002	3300018920	Soil	MATIRVSVSAADERDLEVRIAWLTSAFPTGTEVTVVRGTVFNRHGMPPSPAALLCADSPGVA
Ga0173481_103388132	3300019356	Soil	MMQAMGHSSDSIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAGAA
Ga0207688_101132771	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MSDSASAIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAGAA
Ga0207643_101695034	3300025908	Miscanthus Rhizosphere	MMQAMGHSSDSIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQAA
Ga0207705_104905682	3300025909	Corn Rhizosphere	MSDSAPAIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAEAA
Ga0207659_115423252	3300025926	Miscanthus Rhizosphere	MSHSPDSIRLSVSAADDQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA
Ga0207709_102354123	3300025935	Miscanthus Rhizosphere	MMQAMGHSSDSIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA
Ga0207691_110552621	3300025940	Miscanthus Rhizosphere	MSDSASAIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAEAA
Ga0207677_108049953	3300026023	Miscanthus Rhizosphere	MMQAMGHSSDSIRLSVSAVDDQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA
Ga0207683_103107884	3300026121	Miscanthus Rhizosphere	MCRSCRAMSDSASAIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAGAA
Ga0207428_102646652	3300027907	Populus Rhizosphere	MMQAMGHSSDSIRLSVSAVDEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA
Ga0272482_102286641	3300028578	Soil	MSDSASVIRLSLSAADEQALDTRIAVLRAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQAA
Ga0247828_100619694	3300028587	Soil	MSDPASIIRLSVSGADEQDLDSRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSCAALLCATPPAQAA
Ga0247828_103236701	3300028587	Soil	MMQAMGHSSDSIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPA
Ga0247821_112837982	3300028596	Soil	SCRAMSHSPDSIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA
Ga0247825_101102214	3300028812	Soil	MMQAMGHSSDSIRLSVSAVDEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQAA
Ga0247827_104231252	3300028889	Soil	QAMGDSTDSIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQAA
Ga0247826_100524025	3300030336	Soil	MSDSASVIRLSVSGADEQDLDSRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSCAALLCATPPAQAA
Ga0247826_105611232	3300030336	Soil	MIRLSVAAADEADLEVRIAWLTSSFPSGTEVTVIRGTVFNRHGMPPSPAALLCAVQPVAA
Ga0299913_104832033	3300031229	Soil	MSDSASVIRLSLSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQAA
Ga0307405_105278272	3300031731	Rhizosphere	MSDSASVIRLSVSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA
Ga0307410_105122613	3300031852	Rhizosphere	MSHSDAVIRLSLSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQVA
Ga0307407_107083351	3300031903	Rhizosphere	NHAGHMSDSDSVIRLSLSAADERALDTRIAVLSAAFPVGTLVTVSRGTVFNRHGMPPSPAALLCATPPAATA
Ga0307409_1003886874	3300031995	Rhizosphere	MSDSDSVIRLSLSAADERALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAAL
Ga0307409_1009082141	3300031995	Rhizosphere	MSHSDAVIRLSLSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPARAA
Ga0307409_1011544561	3300031995	Rhizosphere	MSDFVSIRLSVSGADEQDLDSRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSCAALLCATPPAEAA
Ga0307409_1012000502	3300031995	Rhizosphere	MSDSASIRLSVSAVDERALDTRIAVLSAAFPAGTLVTVTRGTVFNRHGMPPSPAALLFATPPAQAA
Ga0307416_1020251721	3300032002	Rhizosphere	SAADERALDTRIAVLSAAFPVGTLVTVSRGTVFNRHGMPPSPAALLCATPPAATA
Ga0307416_1024512642	3300032002	Rhizosphere	MSDFVSIRLSVSGADEQDLDSRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSCAALLCAT
Ga0326721_100757674	3300032080	Soil	MSDSASVIRLSLSAADEQALDTRIAVLRAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQTA
Ga0326721_102024762	3300032080	Soil	MTLRVSVSAADERDLETRIAWLTAAFPSGTEVTVTRGTVFNRHGMPPMPAALLCAVQPVAAA
Ga0307415_1023853011	3300032126	Rhizosphere	SGPHNHWTGVQSFCGTPGMCRSCRAMSHSDAVIRLSLSAADEQALDTRIAVLSAAFPVGTLVTVTRGTVFNRHGMPPSPAALLCATPPAQAA
Ga0372943_0150701_76_246	3300034268	Soil	VSADDEAALDLRIKRLTAAFPVGTEVTVARGVVFNRHGAPPTVAALLCAEQRPAAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094366

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences