Metagenome / Metatranscriptome Family F094351

Basic Information
Family ID	F094351
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	78 residues
Representative Sequence	MDNPAAPAEALNMEQLLHLHTLTKDVSKFCQKQLRGYLDTMALLFRPRRMLGEAMEGAERESVGGS
Number of Associated Samples	97
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (10.377 % of family members)
Environment Ontology (ENVO)	Unclassified (28.302 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.396 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124 1PBDC3_05658400 2F14TC_1022052003 3Ga0063356_1021615862 4Ga0063356_1028529212 5Ga0066395_102267081 6Ga0062594_1033353472 7Ga0070690_1015243011 8Ga0066388_1079838382 9Ga0068868_1022496391 10Ga0070689_1003062262 11Ga0070688_1005432941 12Ga0070663_1006633372 13Ga0070681_110851341 14Ga0070679_1009002641 15Ga0070672_1016350772 16Ga0070664_1009728503 17Ga0066691_106781441 18Ga0070740_102090891 19Ga0068859_1022265752 20Ga0068864_1021510952 21Ga0066903_1066974131 22Ga0068863_1003731442 23Ga0066790_101547363 24Ga0075028_1002361731 25Ga0075028_1008209721 26Ga0075017_1010841242 27Ga0075015_1005688852 28Ga0075018_100468024 29Ga0070765_1011714152 30Ga0097621_1016322731 31Ga0075021_104025472 32Ga0068871_1014666151 33Ga0068871_1014837842 34Ga0075521_105730923 35Ga0066665_106521492 36Ga0075424_1018818321 37Ga0066709_1012925151 38Ga0105248_107458211 39Ga0126382_106446911 40Ga0126373_132096671 41Ga0126372_104500731 42Ga0126378_129467671 43Ga0134125_107592162 44Ga0126383_123142761 45Ga0134127_133038171 46Ga0137776_10227601 47Ga0137380_110837621 48Ga0137361_118550981 49Ga0150984_1075474933 50Ga0137397_110790752 51Ga0157299_100632651 52Ga0157295_101462671 53Ga0137394_106402352 54Ga0126375_109882081 55Ga0126369_102241253 56Ga0126369_114438671 57Ga0126369_129134581 58Ga0157374_128936911 59Ga0182012_108015771 60Ga0182027_104033871 61Ga0157379_125279581 62Ga0157376_120788791 63Ga0137409_113964761 64Ga0181520_108247811 65Ga0187771_100995923 66Ga0187771_118408182 67Ga0066662_107145122 68Ga0193753_1000317113 69Ga0126371_100501291 70Ga0126371_105907802 71Ga0213852_11529735 72Ga0242655_101580171 73Ga0207707_113284492 74Ga0207659_110315761 75Ga0207664_109878751 76Ga0207691_115506941 77Ga0207711_120635551 78Ga0207641_102820261 79Ga0207641_104773332 80Ga0207648_118249953 81Ga0209839_102656822 82Ga0209517_102538302 83Ga0209068_102508292 84Ga0209068_106122612 85Ga0302153_102461292 86Ga0302269_10907111 87Ga0311346_112073912 88Ga0311342_105069712 89Ga0311344_111536461 90Ga0302274_103847782 91Ga0311354_110680523 92Ga0170824_1132801041 93Ga0302320_122023601 94Ga0310686_1038695064 95Ga0306918_106913201 96Ga0302319_109013231 97Ga0310916_112477701 98Ga0306926_107817523 99Ga0308176_117990182 100Ga0306924_109717981 101Ga0311301_118585441 102Ga0306920_1034935321 103Ga0335080_113158731 104Ga0335069_104923563 105Ga0335073_110222621 106Ga0370484_0174627_385_582
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124 1PBDC3_05658400 2F14TC_1022052003 3Ga0063356_1021615862 4Ga0066395_102267081 5Ga0062594_1033353472 6Ga0070690_1015243011 7Ga0066388_1079838382 8Ga0068868_1022496391 9Ga0070681_110851341 10Ga0070679_1009002641 11Ga0070672_1016350772 12Ga0070664_1009728503 13Ga0066691_106781441 14Ga0070740_102090891 15Ga0068859_1022265752 16Ga0068864_1021510952 17Ga0075028_1002361731 18Ga0075028_1008209721 19Ga0075017_1010841242 20Ga0075015_1005688852 21Ga0075021_104025472 22Ga0068871_1014837842 23Ga0075521_105730923 24Ga0075424_1018818321 25Ga0066709_1012925151 26Ga0126382_106446911 27Ga0126373_132096671 28Ga0126383_123142761 29Ga0137776_10227601 30Ga0150984_1075474933 31Ga0137397_110790752 32Ga0157299_100632651 33Ga0157295_101462671 34Ga0126369_102241253 35Ga0137409_113964761 36Ga0181520_108247811 37Ga0126371_105907802 38Ga0242655_101580171 39Ga0311342_105069712 40Ga0306926_107817523 41Ga0308176_117990182 42Ga0306924_109717981
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13646	HEAT_2	6.60
PF13599	Pentapeptide_4	2.83
PF00805	Pentapeptide	1.89
PF11876	DUF3396	1.89
PF09937	DUF2169	0.94
PF05943	VipB	0.94
PF04965	GPW_gp25	0.94
PF00109	ketoacyl-synt	0.94
PF13665	Tox-PAAR-like	0.94
PF09346	SMI1_KNR4	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	1.89
COG3517	Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family	Intracellular trafficking, secretion, and vesicular transport [U]	0.94

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Scaffold	Taxonomy	Length	IMG/M Link
No data available in table

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.94%
Environmental	Environmental	76.42%
Host-Associated	Host-Associated	22.64%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	10.38%
Plants	Host-Associated → Plants	22.64%
Solid Waste	Engineered → Solid Waste	0.94%
Terrestrial	Environmental → Terrestrial	66.04%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	1.89%
Peat	Environmental → Terrestrial → Peat	8.49%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.49%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.32%
Roots	Host-Associated → Plants → Roots	2.83%
Sediment	Environmental → Aquatic → Sediment	7.55%
Soil	Environmental → Terrestrial → Soil	57.55%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.94%
Wood	Engineered → Solid Waste → Wood	0.94%

Habitat	Taxonomy	Distribution
Composting	Engineered → Solid Waste → Wood → Composting	0.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.49%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.94%
Loam	Environmental → Terrestrial → Soil → Loam	11.32%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	8.49%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.66%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.43%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.94%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.60%
Bioreactor	Engineered → Solid Waste → Wood → Composting → Bioreactor	0.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.77%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.94%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.58%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	8.49%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.49%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.55%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.66%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.94%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.94%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	7.55%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.94%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.89%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.89%
Poplar Biomass Bioreactor	Engineered → Solid Waste → Wood → Composting → Bioreactor → Poplar Biomass Bioreactor	0.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.94%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.38%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.72%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.55%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.94%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908004	Poplar biomass bioreactor microbial communities from Brookhaven National Lab, NY - total biomass decay community	Engineered	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 97 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
PBDC3_05658400	2124908004	Poplar Biomass Bioreactor	METPAESLNVEQLLNLHTLTKDVAKVCQKQLRSHLDTIALLFRPRRILGDAMEGAERES
F14TC_1022052003	3300000559	Soil	MSNDAGFVETLNVERLLHLHTLTKDVARFCQKQLRGYLDTLALLFRPRRMLGNAIEGGEPESGGGAERTAN
Ga0063356_1021615862	3300004463	Arabidopsis Thaliana Rhizosphere	MDNPAGQTEALNVERLLHLHTLTKEVAKFCQKQLRAYLDSMSLLFRPRRILGDAIEGGER
Ga0063356_1028529212	3300004463	Arabidopsis Thaliana Rhizosphere	METPAESLNVEQLLHLHTLTKDVAKVCQKQLRSYLDTTALLFRPRRILGDAMEGAERETVGGSDRNLTELRDL
Ga0066395_102267081	3300004633	Tropical Forest Soil	MVDSGGAAEPLNVEQLLRLHTITKDVSRFCQKQLRGYLETLALLFRPRRILGEAIEGGEKESVGGSDRTLAEL
Ga0062594_1033353472	3300005093	Soil	MDNPAAPAEALNMEQLLHLHTLTKDVSKLCQKQLRGYLDTMALLFRPRRMLGEAMEGGERETVGGSDRTVAELRDLYRRVSVRPF
Ga0070690_1015243011	3300005330	Switchgrass Rhizosphere	MDDWFVPAEALKVEQLLQLHAVTKEVSKFFQKQLRGYLDSMALLFRPRRILGEAIEGGERESVGGSERTLSELRELYRRVAVRPFGLRPELSVPL
Ga0066388_1079838382	3300005332	Tropical Forest Soil	MDNPAASAQSLNVEQLLQLHNLTKDVAKVCQKQLRGYLDTMALLFRPRRILGAAMEGAEPESGVGSERTVTELRELFK
Ga0068868_1022496391	3300005338	Miscanthus Rhizosphere	MDNPSLPTQSLNVEQLLRLHALTRDVSKFCQKQFRGYLETMSLLFRPRR
Ga0070689_1003062262	3300005340	Switchgrass Rhizosphere	MDNPAAPAEALNMEQLLHLHTLTKDVSKLCQKQLRGYLDTMALLFRPRRMLGEAMEGGERETVGGSDRTV
Ga0070688_1005432941	3300005365	Switchgrass Rhizosphere	MDNPAAPAEALNMEQLLHLHTLTKDVSKLCQKQLRGYLDTMALLFRPRRMLGEAMEGGERETVGGSDRTVA
Ga0070663_1006633372	3300005455	Corn Rhizosphere	MDNPSLPTQSLNVEQLLRLHALTRDVSKFCQKQFRGYLETMSLLFRPRRILGEAIEGGEK
Ga0070681_110851341	3300005458	Corn Rhizosphere	MDNPAAAATEPLKIEQLLHLHTLTKEVSKFCQRQLRGHLDTLAILFRPRRILGEFVEGSERESVGGSD
Ga0070679_1009002641	3300005530	Corn Rhizosphere	MFRRQEIDMDNPAAAATEPLKIEQLLHLHTLTKEVSKFCQRQLRGHLDTLAILFRPRRILGEFVEGSERESVGGSDRTLAELKDLYKRVALRPFDLRPELAVP
Ga0070672_1016350772	3300005543	Miscanthus Rhizosphere	MENPAASTQALNLEQLLQLHALTKDVAKFCHKQLRGYLETLALLFRPRRILGEAIEGTEREGAGGSERNVAELRELYQRVAGRPFDLRSDLALPIESV
Ga0070664_1009728503	3300005564	Corn Rhizosphere	MDNPPPAETLNVQRLLQLHTLTREVSKFCQKQLRGYLDTMALLFRPRRMLGQAIEGGEKESVGGSEKTVIELRELYRKVAVRPFDL
Ga0066691_106781441	3300005586	Soil	MDSSVGHAESLNVEQLLRLHSLTKEVSKFCQKQLRGYLDTIAMLFRPRRILGEAIEGGEREGVGGSD
Ga0070740_102090891	3300005607	Surface Soil	MDNPAAPTESLDIEQLLRLHTLTKEVARLCQKQLRAYLDAIALLFRPRRMLGDAMEGAERESAGGSERTVAELRDLYRKVAPRPFDLRPELSFPL
Ga0068859_1022265752	3300005617	Switchgrass Rhizosphere	MDNPAAPAEALNMEQLLHLHTLTKDVSKLCQKQLRGYLDTMALLFRPRRMLGEAMEGGERETV
Ga0068864_1021510952	3300005618	Switchgrass Rhizosphere	MDNPAAPAESLNVEQLLQLHTLTKDVSKLCQKQLRGYLETLALLFRPRRMLGDAMEGAERETVGGSDRTLTELRDLYRKVAVRPFDLRPELTTPLESVSTQMQLYEWE
Ga0066903_1066974131	3300005764	Tropical Forest Soil	MDNPAAPAEALNVEQLLHLHTLTKEVSKFCQRQLRAYLDALAILFRPRRILGDAIEGSERESVGGSDRTLAELRELYRR
Ga0068863_1003731442	3300005841	Switchgrass Rhizosphere	MDNPVGPAESLNVEQLLHLHTLTKEVSKFCQKQLRGYLETTSLLFRPRRILGEAIEGAEKESVGGSDRTVAELRELYRKVA
Ga0066790_101547363	3300005995	Soil	MDNPAAPAEALNVEQLLHLHNLTKDLSKLCQKQLRGYLDTMALLFRPRRVLGDAME
Ga0075028_1002361731	3300006050	Watersheds	MDQTAAPASALNIEQLLQLHSLTKDVAKLCQKQLRTYLDTVAMLFRPRRTLGDAIEGSERESIANADRNVAELRELFRGVALRPFDVRPELNLPIESISTQIQLNEWE
Ga0075028_1008209721	3300006050	Watersheds	MDQSAAPAASALNVEQLLQLHSLTKDVAKLCQKQLRTYLDTVAMLFRPRRTLGDAIEGSERESIANADHNVAELRELFRSVALRPF
Ga0075017_1010841242	3300006059	Watersheds	MANQGIVIKEPLLVENRAAGAEALKIEELLHLHNLTKDVAKLCQKQLRGYLDTMALLFRPRRILGEAMEGSERESIVG
Ga0075015_1005688852	3300006102	Watersheds	VENRAAGAEALKIEELLHLHNLTKDVAKLCQKQLRGYLDTMALLFRPRRILGEAMEGSERESIVGAERTMAELRELY
Ga0075018_100468024	3300006172	Watersheds	MDQSAAPASALNVEQLLQLHSLTKDVAKLCQTQLRTYLDTVAMLFRPRRTLGDSIEGSERESIANADRNVAELRELFRGVALRPFDLRPELSLPIESISTQIQLNEWE
Ga0070765_1011714152	3300006176	Soil	MDNPAAPAETLNVEQLLHLHTLTKELSKFCQKQLRSYLDTMALLFRPRRILGDAMEGAERESVGGSDRTVTELRELYRRVAVRPFD
Ga0097621_1016322731	3300006237	Miscanthus Rhizosphere	MDNPAAPAESLNVEQLLHLHTLTKDVAKLCQKQLRAHLDTLALLFRPRRILGDAMEGAERETVGGSDRTLAELRDLYRKVALRPFDLRPELTLPLESVSTEMRLY
Ga0075021_104025472	3300006354	Watersheds	MDQSAAPASALNIEQLLQLHSLTKDVAKLCQKQLRTYLDTVAMLFRPRRTLGDAIEG
Ga0068871_1014666151	3300006358	Miscanthus Rhizosphere	MDNPAAPAEALNMEQLLHLHTLTKDVSKFCQKQLRGYLDTMALLFRPRRMLGEAMEGAE
Ga0068871_1014837842	3300006358	Miscanthus Rhizosphere	MDDWFVPAEALKVEQLLQLHAVTKEVSKFFQKQLRGYLDSMALLFRPRRILGEAIEGG
Ga0075521_105730923	3300006642	Arctic Peat Soil	MDNPAAPAAESLNVEQLLHLHTLTKDVARLCQKQLRGYLDTMALLFRPRRILGD
Ga0066665_106521492	3300006796	Soil	MDKPAVPAESLNVEQLLHLHALTKEVSKFCQKQLKGYLDTMAMLFRPRRSLGDAIEGGEREAVGG
Ga0075424_1018818321	3300006904	Populus Rhizosphere	MEQQPSLTPDINVEQLLHLHTVTKEVSKFCHRQLRGYLDAMAIVFRPRRILGEAIEGGER
Ga0066709_1012925151	3300009137	Grasslands Soil	MNPSDNLNAGQVLRLHNLTKDVSKFCERQLRTYLDALAPVFRARRIL
Ga0105248_107458211	3300009177	Switchgrass Rhizosphere	MDNPAAPAESLNVEQLLHLHTLTKDVAKLCQKQLRGHLDTLALLFRPRRILGDAMEGAERETVG
Ga0126382_106446911	3300010047	Tropical Forest Soil	MDNPAAPAEVLNVEQLLRLHTLTKEVSKFCHKQLRAYLDTMALLFRPRRILGEAMEGAEPESVGGSDRIVAEL
Ga0126373_132096671	3300010048	Tropical Forest Soil	MENRAAPTEALNVEQLLHLHNLTKDVSKFCQKQLRNYLDTTALLFRPRRMLGDAMEGAEHEAIWGSERNTAELRELYLRVAIRPFDLRPELNLPLESVSTQ
Ga0126372_104500731	3300010360	Tropical Forest Soil	MVDSGGAAEPLNVEQLLRLHTITKDVSRFCQKQLRGYLETLALLFRPRRILGEAIEGGEKESVGGSDRTLAELREL
Ga0126378_129467671	3300010361	Tropical Forest Soil	MDNPAASAAALNVEQLLHLHTLTKDVAKVCQKQLRAYLDTMALLFRPRRILGDYMEGAEKESVGGSDRTLAELR
Ga0134125_107592162	3300010371	Terrestrial Soil	MENPASQTEALNVEQLLHLHTLTKDVAKFCQKQLRGYLDTTALLFRPRRILGDAMEGAERESVGGSE
Ga0126383_123142761	3300010398	Tropical Forest Soil	MDNPAAPVASLNVEQLLQLHNLTKDVAKVCQKQLRGCLDTMALLFRPRRILGAAMEGAEPESGVGSERTVTELRELFKKVALRPFALRPELSFPLASAS
Ga0134127_133038171	3300010399	Terrestrial Soil	MDNPAAPAESLNVEQLLHLHTLTKEVAKLCQKQLRGYLDTLALLFRPRRMLGDAMEGAERESVGGSKRAIAELRDLYRKAALRPFDLRPELNIPLESVSTQMQLYEW
Ga0137776_10227601	3300010937	Sediment	MDNQDVSTDSLNLEQLVQLHALTKDVSKFCHKQLRGYLDTAALLFRPRRILGEAIEG
Ga0137380_110837621	3300012206	Vadose Zone Soil	MNKPAGPAESLNVEQLLHLHTLTKEVSKLCQKQLRGYLDTMALLFRPRRILGEAIEGGER
Ga0137361_118550981	3300012362	Vadose Zone Soil	MDNPAAPAQALNIDELLHLHTLTKDVSKLCQKQLRGYLDTMALLFRPRRMLGEAVEGAEREAAGGSDRTIEEFRDLYRRV
Ga0150984_1075474933	3300012469	Avena Fatua Rhizosphere	MPEQASAAQTLSLEQLLHLHTLTRELSRLYQRQLRGYLDTLALLFRPRRILGDAIE
Ga0137397_110790752	3300012685	Vadose Zone Soil	MVNPSGSAESLNVEQLLHLRTLTEEVSKFCQKQLKGYLDTMAMLFRPRRSLGDAIEGGEREGVGGADRSLAGLREIYKCVALRPWDPPPE
Ga0157299_100632651	3300012899	Soil	MEHQPSLKPDINVEQLLRLHALTREVSRFCQKQLRGYLDTMSLLFRPRRILGEAIEGGEKESVGGSERTVTELRELYRKVAVRPFELRPELGVPIE
Ga0157295_101462671	3300012906	Soil	MEHQPSLKPDINVEQLLRLHALTREVSRFCQKQLRGYLDTMSLLFRPRRILGEAIEGGEKESVGG
Ga0137394_106402352	3300012922	Vadose Zone Soil	MVNPSGSAESLNVEQLLHLRTLTEEVSKFCQKQLKGYLDTMAMLFRPRRSLGDVIEGGERESVGGSDRTLAEL
Ga0126375_109882081	3300012948	Tropical Forest Soil	MDSPVGPAEPINVEQLLHLHTLTKEVSKFCQKQLRGYLDTIALLFRPRRILGEAIEGGEKESVGGSDRTLAELRELFRKVALRPFDLRQELNVPLESISTQMQLYEWE
Ga0126369_102241253	3300012971	Tropical Forest Soil	MSEASLNVEQLLQLHALTREVSNFFQKQLRGYLDTLSLLFRPRRILGEAIEGGEKESVGGSDRNI
Ga0126369_114438671	3300012971	Tropical Forest Soil	MDNPAAPAEVLNVEQLLRLHTLTKEVSKFCHKQLRAYLDTMALLFRPRRILGEAMEGAEPESVGGSDRIV
Ga0126369_129134581	3300012971	Tropical Forest Soil	MDNPAAMAAEPLKIEQLLHLHTLTKEVSKFCQRQLRAHLDTLAILFRPRRILGEYIEGSERESVGGSDRTLAELRDL
Ga0157374_128936911	3300013296	Miscanthus Rhizosphere	MDNPAAPAEALNMEQLLHLHTLTKDVSKFCQKQLRGYLDTMALLFRPRRMLGEAMEGAERESVGGS
Ga0182012_108015771	3300014499	Bog	MDQSAATAPALNMEQLLQLHSLTKDVAKLCQKQLRTYLDTTAMLFRPRRSLGDAIEGSERESVPHSERNVTELRELYRKVALRPFDL
Ga0182027_104033871	3300014839	Fen	MDNSAAPAESLNVEQLLHLHTLTKEVAKVCQKQLRGYLDTLALLFRPRRMLGDAMEGAERETVGGSERTVAELRELYRKLALRPFDLRPELSLPLESVSTQ
Ga0157379_125279581	3300014968	Switchgrass Rhizosphere	MDNPAAPAESLNVEQLLHLHTLTKDVAKLCQKQLRGNLDTLALLFRPRRILGDAMEGAERETVGGSDRTLTELRDLYRKVALRPFDLRPELTLPLESVSTEMRLYEWEYL
Ga0157376_120788791	3300014969	Miscanthus Rhizosphere	MDNPAAPAEALNMEQLLHLHTLTKDVSKLCQKQLRGYLDTMALLFRPRRMLGEAMEGGERETVGGS
Ga0137409_113964761	3300015245	Vadose Zone Soil	MDNPVVPVEALKIEQLLHLHTLTKEVSKFCQKQLRGYLDTMALMFRPRRILGDLIEGSEKESVGGSDRTLAELKEL
Ga0181520_108247811	3300017988	Bog	MDNPAPPADTLNVEQLLHLHTLTKDVAKVCQKQLRGFLDTMALLFRPRRILGDAIEGSERESVGSFDRNVAELRDLYRKVAPRQFDLRPELNFP
Ga0187771_100995923	3300018088	Tropical Peatland	MDNSAAPAESLNVDQLLQLHTLTKEVAKLCQKQLRGYLETMALLFRPRRMLGDAMEGAEREAVGGSERTVNELRDLYR
Ga0187771_118408182	3300018088	Tropical Peatland	MDNPAAPAEALNVEQLLHLHTLTKDLSKFCQKQLRAYLDTMALLFRPRRILGDAMEG
Ga0066662_107145122	3300018468	Grasslands Soil	MDNPAAAAQSLNLDQLLHLHTLTKEVSKFCHKQLRGYLDTMALLFRPRRIFGDAMEGAERETAAGSERAVAELRDL
Ga0193753_1000317113	3300020034	Soil	MDNPAIPAESLKIEQLLQLHALTKDVSKFCQKQLRGYLDTAALLFRPRRTLGDAIEGSEPESAGSSERNVAELRELYRRVALRPFDLRPELTLQ
Ga0126371_100501291	3300021560	Tropical Forest Soil	MDNPAASAAALNVEQLLHLHTLTKDVAKVCQKQLRAYLDTLALLFRPRRILGDFMEGAERESVGGSDRTLAELRDLYKKVALRPFD
Ga0126371_105907802	3300021560	Tropical Forest Soil	MENRAVPAEALNVEQLLHLHNLTKDVSKFCQKQLRSYLDTAALLFRPRRMLGDAIEGAEPELIGGS
Ga0213852_11529735	3300021858	Watersheds	MDNPAPPAESLNVEQLLHLHTLTKDVAKVCQKQLRGYLDTLALLFRPRRIFGDAIEGAERESVAGADRNVAELRELYRKVALRPFDLRPELSLPLESV
Ga0242655_101580171	3300022532	Soil	MDNLAGSAEALNVEQLLHIHTLTKEVAKACQKQLRGYLDTMAPLFRPRRMLGEAVEGTDRESATKSEQTIAEFREL
Ga0207707_113284492	3300025912	Corn Rhizosphere	MDNPAAAATEPLKIEQLLHLHTLTKEVSKFCQRQLRGHLDTLAILFRPRRILGEFVEG
Ga0207659_110315761	3300025926	Miscanthus Rhizosphere	MDNPAAPAESLNVEQLLHLHTLTKDVSKFCQKQLRGYLETMALLFRPRRSLGEAMEGAERETVGGSERTLLELRDLYRRV
Ga0207664_109878751	3300025929	Agricultural Soil	MENPAASAEALNVEQLLHLHTLTKEVAKVCQKQLRGYLETMALLFRPRRMLGDAMEGAERESVGGSERTVAELRELY
Ga0207691_115506941	3300025940	Miscanthus Rhizosphere	MDDWFVPAEALKVEQLLQLHAVTKEVSKFFQKQLRGYLDSMALLFRPRRILGEAIEGGERESVGGSERTLSELRELYRRVAVRPFGLRPELSVPLESISTSMQLFEW
Ga0207711_120635551	3300025941	Switchgrass Rhizosphere	MDNPAAPAESLNVEQLLHLHTLTKDVSKFCQKQLRGYLETLALLFRPRRILGDAMEGAERESVGGSERTLLELRDLYRRVAVR
Ga0207641_102820261	3300026088	Switchgrass Rhizosphere	MDNPVGPAESLNVEQLLHLHTLTKEVSKFCQKQLRGYLETTSLLFRPRRILGEAIEGAEKESVGGSDRTVAELRELYRKVALRPFDLRPE
Ga0207641_104773332	3300026088	Switchgrass Rhizosphere	MDDWFVPAEALKVEQLLQLHAVTKEVSKFFQKQLRGYLDSMALLFRPRRILGEAIEGGERESVGGSERTLSELRELYRRVAVRPFGLRPELSVPLESI
Ga0207648_118249953	3300026089	Miscanthus Rhizosphere	MDNPAAPAEALNMEQLLHLHTLTKDVSKLCQKQLRGYLDTMALLFRPRRMLGEAVEGAARESAAGSERTIAEFRDLYRS
Ga0209839_102656822	3300026294	Soil	MDNPAAPAEALNVEQLLHLHNLTKDLSKLCQKQLRGYLDTMALLFRPRRMLGDAIEGATA
Ga0209517_102538302	3300027854	Peatlands Soil	MDNPAAPAEGLNVEQLLHLHTLTKDVAKICQKQLRGYLDTMALLFRPRRILGDAMEGAERESVGGSERTLAELRELYRKVALRQFDLRPELSVPLESVSTQMQLYEW
Ga0209068_102508292	3300027894	Watersheds	MDQTAAPASALNIEQLLQLHSLTKDVAKLCQKQLRTYLDTVAMLFRPRRTLGDAIEGSERESIANADRNVAELRELFRGVALRPFDVRPELNLPIESIS
Ga0209068_106122612	3300027894	Watersheds	MDQSAAPAASALNVEQLLQLHSLTKDVAKLCQKQLRTYLDTVAMLFRPRRTLGDAIEGS
Ga0302153_102461292	3300028574	Bog	MDQPAASAPALNIEQLLQLHSLTKDVAKLCQKQLRTYLDTAAMLFRPRRTLGDAIEGSERESIPNSERNVTELRELFRSV
Ga0302269_10907111	3300028766	Bog	MDQPAASAPALNIEQLLQLHSLTKDVAKLCQKQLRTYLDTAAMLFRPRRTLGDAIEGSE
Ga0311346_112073912	3300029952	Bog	MDQPAASAPALNIEQLLQLHSLTKDVAKLCQKQLRTYLDTAAMLFRPRRTLGDAIEGSER
Ga0311342_105069712	3300029955	Bog	MEQLLQLHSLTKEVAKLCQKQLRTYLDTTAMLFRPRRSLGDAIEGSERESVPHSERNVTELRELYRKVALRPFDLRPELSVPIESISTQIQLQE
Ga0311344_111536461	3300030020	Bog	MDQSAAPAPALNIEQLLQLHALTKDVAKHCQKQLRTYLDTTAMLFRPRRILGDAIEGSERESSTNAERNVAELRELFRSVALRPFDLRPELSVPIQSI
Ga0302274_103847782	3300030041	Bog	MDQPAASAPALNIEQLLQLHSLTKDVAKLCQKQLRTYLDTAAMLFRPRRTLGDAIEGSERESIPNSERNVTELRELFRSVALRPFDLRP
Ga0311354_110680523	3300030618	Palsa	MDNPAAPAEALNVEQLLHLHTLTKDLSKFCQKQLRGYLDTMALLFRPRRILGDAMEGAERESGVASDRTVAE
Ga0170824_1132801041	3300031231	Forest Soil	MDNPAPPAEDLKIEQLLHLHTLTKEVSKFCQKQLRGYLDTMALLFRPRRILGDAM
Ga0302320_122023601	3300031524	Bog	MDQSAPAPALNIEQLLQLHALTKDVAKLCQKQLRTYLDTTAMLFRPRRILGDAIEGSERESIANSDRNVAELRELFRSVALRPFDLRPELSVPIESISTQM
Ga0310686_1038695064	3300031708	Soil	MDNPAVPAEDLKIEQLLHLHTLTKEVSKFCQKQLRGYLDTMALLFRPRRILGEAME
Ga0306918_106913201	3300031744	Soil	MDKPAAPAEGLNVEQLLHLHTLTKEVAKVCQKQLRGHLDTLALLFRPRRILGDAMEGAEPESGGGSERTVTELRELYRKIALRPFDLRPELSLPLESVSTQMQLYD
Ga0302319_109013231	3300031788	Bog	MDNQAPPADALNVEQLLQLHTLTKDVAKVCQKQLRGFLDTIALLFRPRRVLGDAIEGSERESVGSSDRNVAELRELYRKVAPRPFDLR
Ga0310916_112477701	3300031942	Soil	MENPAAPAHALNIEQLLLLHNLTKDVSKFCQKQLRGYLDTMALLFRPRRIL
Ga0306926_107817523	3300031954	Soil	MEDPAAPAHALNIEQLLLLHNLTKDVSKFCQKQLRGYLDTMALLFRPRR
Ga0308176_117990182	3300031996	Soil	MDKAPPAEDLNIDQLLQLHAVTKDVARLCQKQLRTCLDTMALLFRPRRMLGDAVEGAERESAVGSDKNLAELS
Ga0306924_109717981	3300032076	Soil	MEDPAAPAHALNIEQLLLLHNLTKDVSKFCQKQLRGYLDTMALLFRPRRILGEAMEGGEGEFFGGSERTISELR
Ga0311301_118585441	3300032160	Peatlands Soil	MDNPAAPAEALNIDQLLHLHTLTKEVSKLCQKQLRGYLDTLALLFRPRRILGEAIEGSERESAGGSDRAVAELREL
Ga0306920_1034935321	3300032261	Soil	MDNPAAAESLNVEQLLHLHTLTKDVAKLCQKQLRAHLETLALLFRPRRILGDAIEGAERESVGGSDRTLAELRELYRKVAQRTFDLRPELTVPLESV
Ga0335080_113158731	3300032828	Soil	MDNPAAPAEGLNVEQLLQLHTLTKEVARACQKQLRGYLDTMALLFRPRRILGEAMEGAER
Ga0335069_104923563	3300032893	Soil	MDNPAAPAEGLNVEQLLQLHTLTKEVARACQKQLRGYLDTMALLFRPRRILGEAMEGAERESVGDSERTLAELRDLYRKVALRPFDLRPELTV
Ga0335073_110222621	3300033134	Soil	MDNQAPPADALNVEQLLQLHTLTKDVAKVCQKQLRGFLDTMALLFRSRRILGDAIEGSERESVGSSDRNVAELRELYRKVAPRPFDLRPELNFPLESIST
Ga0370484_0174627_385_582	3300034125	Untreated Peat Soil	MDNSAAAESLNIEQLLQLHSLTKDVSKFCQKQLRGYLDTLALLFRPRRSLGEAIEGGERESVGGAE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094351

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences