Metagenome / Metatranscriptome Family F094349

Basic Information
Family ID	F094349
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	106 residues
Representative Sequence	MLLTPSMIGALLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTLVNLLFVYGYIPSRSVLLVLSAKLRRCS
Number of Associated Samples	85
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	55.66 %
% of genes near scaffold ends (potentially truncated)	30.19 %
% of genes from short scaffolds (< 2000 bps)	82.08 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (78.302 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (55.660 % of family members)
Environment Ontology (ENVO)	Unclassified (51.887 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.660 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.22% β-sheet: 7.34% Coil/Unstructured: 28.44%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF10944	DUF2630	8.49
PF11185	DUF2971	1.89
PF13185	GAF_2	1.89
PF01638	HxlR	0.94
PF02146	SIR2	0.94
PF13701	DDE_Tnp_1_4	0.94
PF01433	Peptidase_M1	0.94
PF07589	PEP-CTERM	0.94
PF07681	DoxX	0.94
PF12651	RHH_3	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	0.94
COG0846	NAD-dependent protein deacetylase, SIR2 family	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.94
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.94
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.94

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.30 %
All Organisms	root	All Organisms	21.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.30 %
cellular organisms	root	All Organisms → cellular organisms	20.75 %
Viruses	superkingdom	All Organisms → Viruses	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.30 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	20.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.30 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	7.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.30 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.77 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.30 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.30 %
Devosiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae	1.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.94 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.30 %
Devosia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia	1.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.30 %
unclassified Devosia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → unclassified Devosia	1.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.94 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.30 %
Devosia sp. 66-22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → unclassified Devosia → Devosia sp. 66-22	1.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.89 %
Bradyrhizobium sp. 150	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 150	0.94 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10092983	All Organisms → cellular organisms → Bacteria	2178	Open in IMG/M
3300005537\|Ga0070730_10612234	Not Available	694	Open in IMG/M
3300005538\|Ga0070731_11068483	Not Available	534	Open in IMG/M
3300005542\|Ga0070732_10183743	Not Available	1248	Open in IMG/M
3300005602\|Ga0070762_10690362	Not Available	684	Open in IMG/M
3300006050\|Ga0075028_100772778	Not Available	583	Open in IMG/M
3300006086\|Ga0075019_10501007	Not Available	753	Open in IMG/M
3300006162\|Ga0075030_100528222	Not Available	938	Open in IMG/M
3300006172\|Ga0075018_10079319	Not Available	1422	Open in IMG/M
3300006176\|Ga0070765_102306456	Not Available	501	Open in IMG/M
3300007258\|Ga0099793_10148829	Not Available	1108	Open in IMG/M
3300007265\|Ga0099794_10038708	Not Available	2260	Open in IMG/M
3300009038\|Ga0099829_10128249	All Organisms → cellular organisms → Bacteria	2005	Open in IMG/M
3300009038\|Ga0099829_11462821	Not Available	564	Open in IMG/M
3300009088\|Ga0099830_10821209	Not Available	767	Open in IMG/M
3300009088\|Ga0099830_11231895	Not Available	621	Open in IMG/M
3300009089\|Ga0099828_10752449	Not Available	874	Open in IMG/M
3300009090\|Ga0099827_10649516	Not Available	911	Open in IMG/M
3300009143\|Ga0099792_10468933	Not Available	783	Open in IMG/M
3300009143\|Ga0099792_11097685	Not Available	536	Open in IMG/M
3300010159\|Ga0099796_10321381	Not Available	661	Open in IMG/M
3300011269\|Ga0137392_10374856	Not Available	1180	Open in IMG/M
3300011269\|Ga0137392_10909131	Not Available	724	Open in IMG/M
3300011270\|Ga0137391_11048572	Not Available	662	Open in IMG/M
3300011271\|Ga0137393_10889534	Not Available	760	Open in IMG/M
3300011271\|Ga0137393_11034318	Not Available	699	Open in IMG/M
3300012096\|Ga0137389_10425347	Not Available	1135	Open in IMG/M
3300012096\|Ga0137389_10504253	All Organisms → Viruses → Predicted Viral	1038	Open in IMG/M
3300012096\|Ga0137389_11392303	Not Available	596	Open in IMG/M
3300012189\|Ga0137388_10133729	Not Available	2176	Open in IMG/M
3300012189\|Ga0137388_10456660	All Organisms → cellular organisms → Bacteria → Acidobacteria	1185	Open in IMG/M
3300012199\|Ga0137383_10399533	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300012202\|Ga0137363_10049582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	3002	Open in IMG/M
3300012203\|Ga0137399_10559498	Not Available	961	Open in IMG/M
3300012206\|Ga0137380_10046203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → unclassified Devosia → Devosia sp. 66-22	3998	Open in IMG/M
3300012207\|Ga0137381_10023634	All Organisms → cellular organisms → Bacteria → Acidobacteria	4888	Open in IMG/M
3300012209\|Ga0137379_10125651	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2465	Open in IMG/M
3300012211\|Ga0137377_10012639	All Organisms → cellular organisms → Bacteria	7182	Open in IMG/M
3300012349\|Ga0137387_10969563	Not Available	611	Open in IMG/M
3300012357\|Ga0137384_10343308	Not Available	1238	Open in IMG/M
3300012361\|Ga0137360_11112827	Not Available	682	Open in IMG/M
3300012361\|Ga0137360_11113414	Not Available	682	Open in IMG/M
3300012362\|Ga0137361_10013634	All Organisms → cellular organisms → Bacteria	5927	Open in IMG/M
3300012363\|Ga0137390_10946606	Not Available	815	Open in IMG/M
3300012363\|Ga0137390_10962180	Not Available	807	Open in IMG/M
3300012582\|Ga0137358_10424921	Not Available	898	Open in IMG/M
3300012683\|Ga0137398_10543204	Not Available	801	Open in IMG/M
3300012683\|Ga0137398_10752975	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300012683\|Ga0137398_10959306	Not Available	594	Open in IMG/M
3300012917\|Ga0137395_10922911	Not Available	630	Open in IMG/M
3300012923\|Ga0137359_10914267	Not Available	756	Open in IMG/M
3300012923\|Ga0137359_11006215	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300012923\|Ga0137359_11631238	Not Available	533	Open in IMG/M
3300012924\|Ga0137413_11498196	Not Available	548	Open in IMG/M
3300012925\|Ga0137419_10884405	Not Available	735	Open in IMG/M
3300012927\|Ga0137416_11090127	Not Available	716	Open in IMG/M
3300012929\|Ga0137404_11467999	Not Available	631	Open in IMG/M
3300012930\|Ga0137407_10960547	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300012944\|Ga0137410_11364634	Not Available	615	Open in IMG/M
3300013503\|Ga0120127_10168259	Not Available	532	Open in IMG/M
3300014054\|Ga0120135_1038270	Not Available	691	Open in IMG/M
3300014501\|Ga0182024_10538381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 150	1476	Open in IMG/M
3300014501\|Ga0182024_11770207	Not Available	693	Open in IMG/M
3300014501\|Ga0182024_11914660	Not Available	659	Open in IMG/M
3300015051\|Ga0137414_1178350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → unclassified Devosia → Devosia sp. 66-22	2463	Open in IMG/M
3300015241\|Ga0137418_10007580	All Organisms → cellular organisms → Bacteria → Acidobacteria	9973	Open in IMG/M
3300017934\|Ga0187803_10160159	Not Available	886	Open in IMG/M
3300017936\|Ga0187821_10484184	Not Available	516	Open in IMG/M
3300018007\|Ga0187805_10641942	Not Available	503	Open in IMG/M
3300020170\|Ga0179594_10013176	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2360	Open in IMG/M
3300020579\|Ga0210407_10679758	Not Available	799	Open in IMG/M
3300020581\|Ga0210399_11108582	Not Available	633	Open in IMG/M
3300020583\|Ga0210401_10281491	Not Available	1523	Open in IMG/M
3300021046\|Ga0215015_10817396	All Organisms → cellular organisms → Bacteria	6947	Open in IMG/M
3300021086\|Ga0179596_10555006	Not Available	583	Open in IMG/M
3300021180\|Ga0210396_10043123	All Organisms → cellular organisms → Bacteria → Acidobacteria	4149	Open in IMG/M
3300021181\|Ga0210388_10700941	Not Available	882	Open in IMG/M
3300021420\|Ga0210394_10155764	Not Available	1986	Open in IMG/M
3300021420\|Ga0210394_11406450	Not Available	593	Open in IMG/M
3300021432\|Ga0210384_10013181	All Organisms → cellular organisms → Bacteria → Acidobacteria	8258	Open in IMG/M
3300021432\|Ga0210384_10850543	Not Available	811	Open in IMG/M
3300021474\|Ga0210390_11204975	Not Available	611	Open in IMG/M
3300021559\|Ga0210409_10011888	All Organisms → cellular organisms → Bacteria → Acidobacteria	8695	Open in IMG/M
3300026551\|Ga0209648_10546064	Not Available	650	Open in IMG/M
3300027591\|Ga0209733_1033976	Not Available	1369	Open in IMG/M
3300027643\|Ga0209076_1022148	Not Available	1734	Open in IMG/M
3300027660\|Ga0209736_1052283	Not Available	1160	Open in IMG/M
3300027667\|Ga0209009_1081991	Not Available	816	Open in IMG/M
3300027671\|Ga0209588_1087137	Not Available	1007	Open in IMG/M
3300027674\|Ga0209118_1021819	Not Available	2030	Open in IMG/M
3300027846\|Ga0209180_10176922	Not Available	1231	Open in IMG/M
3300027862\|Ga0209701_10334827	Not Available	861	Open in IMG/M
3300027869\|Ga0209579_10327818	Not Available	827	Open in IMG/M
3300027894\|Ga0209068_10167715	Not Available	1195	Open in IMG/M
3300027903\|Ga0209488_10468310	Not Available	926	Open in IMG/M
3300027903\|Ga0209488_10601760	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300027911\|Ga0209698_10773211	Not Available	727	Open in IMG/M
3300028047\|Ga0209526_10518198	Not Available	775	Open in IMG/M
3300029636\|Ga0222749_10045528	Not Available	1922	Open in IMG/M
3300029636\|Ga0222749_10327832	Not Available	797	Open in IMG/M
3300030054\|Ga0302182_10237797	Not Available	774	Open in IMG/M
3300031057\|Ga0170834_108397767	Not Available	569	Open in IMG/M
3300031231\|Ga0170824_127937111	Not Available	528	Open in IMG/M
3300031708\|Ga0310686_100539385	Not Available	2986	Open in IMG/M
3300031708\|Ga0310686_112621981	Not Available	1494	Open in IMG/M
3300031962\|Ga0307479_11395677	Not Available	659	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.51%
Aquatic	Environmental → Aquatic	8.49%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.57%
Sediment	Environmental → Aquatic → Sediment	5.66%
Freshwater	Environmental → Aquatic → Freshwater	2.83%
Peat	Environmental → Terrestrial → Peat	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.19%
Loam	Environmental → Terrestrial → Soil → Loam	7.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.66%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	62.26%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.66%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	55.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.26%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.66%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental	Open in IMG/M
3300014054	Permafrost microbial communities from Nunavut, Canada - A34_5cm_12M	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_100929833	3300001593	Forest Soil	MLLTPTMIGAVLAGICLWTLFWAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILLTEATNYFAHGMSSPIGVGFAMGGTIVNMLVVYGYIPSRRLLSVISAKLRTSSVN*
Ga0070730_106122341	3300005537	Surface Soil	MLLTPTMIGAILAGICLWTLFWAALHKIGEIPYVRDILTTNDCLDWIQQRPGLTILLTEATNYLFHGMSSPIGVGFAMGGTIVNMLVIYGYVPSRKLLSVISAELHASS*
Ga0070731_110684831	3300005538	Surface Soil	MLLTPTMVGAVLAGICLWSLFWAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILMTEAANYLAHGTSPIGVGFAMGGTIVNMLAIYGYIPSRKLLSVISAKLHASASQSA*
Ga0070732_101837431	3300005542	Surface Soil	MLLTPTMIGAILAGICLWTLFWAALHKIEEIPYVRDILTTNECLDWIQQRPGLTILLTEATNYLAHGISSPIGVGFAMGGTIVNMLAVYGYIPSRGLLSVISAKLRTSLANHST*
Ga0070762_106903621	3300005602	Soil	LAGICLWTLFWAALHKIEEIPYVRDIITTNDCLDWIQQRPGLTILLTEATNYLTHGISSPIAVGFALGGTIVNMLAIYGYIPSRKLFSVISAKLRTSS*
Ga0075028_1007727781	3300006050	Watersheds	MLLTPTMVGAILAGICLWTLFWAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILLTEATNYFAHGISSPVGVGFAMGGTIVNMLAVYGYIPSRGLLSVISAKLRTSLVNHST*
Ga0075019_105010072	3300006086	Watersheds	MLLTPTMIGAVLAGICLWTLFWAALHKIEEIPYVRDIITTNECLDWIQQRPGLTILLTEATNYFAHGISSPVGVGFAMGGTIVNMLAVYGYIPSRGLLSVISAKLRTSSVNHST*
Ga0075030_1005282221	3300006162	Watersheds	LAGICLWTLFWAALHKIEEIPYVRDIITTNECLDWIQQRPGLTILLTEATNYFAHGISSPVGVGFAMGGTIVNMLAVYGYIPSRGLLSVISAKLRTSLVNHST*
Ga0075018_100793193	3300006172	Watersheds	MLLTPSMIGAVLAGICLWLLFWTALHKIGEIPYVSDCLTTNQCLDWIQQRPGLTILLSEAANYLVHGISSPIGVGFAMGGTIINLLFVYGHIPSRGVVSLIATRFRRCSEAK*
Ga0070765_1023064561	3300006176	Soil	MLFTPTMVGAILAGICLWTLFWAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILLTEATNYLVHGISSPVGVGFAMGGTIVNMLAVYGYIPSRGLLSVISAKLRTSLVNHS
Ga0099793_101488291	3300007258	Vadose Zone Soil	MIGALLAGICLWLLFWAALHKVEEIPYVRDFISTKLCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTVINILFIYGYIPSRSVLSIISAKLRRCS*
Ga0099794_100387084	3300007265	Vadose Zone Soil	MIGALLAGICLWLLFWGALHKVEEIPYVRDFLSTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTMVNLLFVYGYVPSRSVLSIISAKLRRCS*
Ga0099829_101282493	3300009038	Vadose Zone Soil	MIGALLAGICLWLLFWAALHKIEEIPYVRDFVSTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTLVNLLFVYGYVPSRSVLLVLSAKLRRCS*
Ga0099829_114628211	3300009038	Vadose Zone Soil	MIGALLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTFVNLLFVYGYIPS
Ga0099830_108212091	3300009088	Vadose Zone Soil	MLLTPTMIGAVLAGIFLWSLFWAALHKIEEIPYVRDTLSTNQCLDWIEQRPGLTLLLTEVTNYLVHGISSPVGVAFAMGGTIVNMLFVYGYIPSRNVLSVLSARLRRCS*
Ga0099830_112318952	3300009088	Vadose Zone Soil	MLLTPSMIGALLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTMVNLLFVYGYIPTRSVLLVLSARLRRCSRA*
Ga0099828_107524491	3300009089	Vadose Zone Soil	MIGALLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLVLTEATNYLVHGISSPIGVGFAMGGTLVNLLIVYGYIPSRNVLLVLSAKLRRCSRA*
Ga0099827_106495161	3300009090	Vadose Zone Soil	MIGALLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTFVNLLFVYGYIPSRSVLLVLSAKLRRCS*
Ga0099792_104689331	3300009143	Vadose Zone Soil	MLLTPTMIGAVLAGICLWTLFWAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILLTEATNYFAHGRSSPIGVGFAMGGTIVNMLVVYGYIPSRRLLSVITAKLRESSAAI*
Ga0099792_110976851	3300009143	Vadose Zone Soil	MIGALLAGICLWLLFWGALHKVEEIPYVRDFISTKLCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTVINILFIYG
Ga0099796_103213811	3300010159	Vadose Zone Soil	ALLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLVLTEATNYLVHGISSPIGVGFAMGGTFVNLLFVYGYIPSRSVLLVLSAKLRRCS*
Ga0137392_103748562	3300011269	Vadose Zone Soil	MLLTPTMIGAVLAGICLWTLFWAALHKIEEIPYVRDILTMKDCLDWIQQRPGLTILMTEAVNYIAHGTSPIGVGFAMGGTIVNLLAVYGYIPSRKLLSVISVKLRTPSVNQAT*
Ga0137392_109091312	3300011269	Vadose Zone Soil	MIGALLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTMVNLLFVYGYIPSRSVLLVLSARLRRCSRA*
Ga0137391_110485721	3300011270	Vadose Zone Soil	MIGALLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTFVNLLFVYGYIPSRSVLVVLSAKLRRCSRA*
Ga0137393_108895341	3300011271	Vadose Zone Soil	MIGALLAGICLWLLFWAALHKIEEIPYVRDFLSTKQCLDWIQQRPGLTLFLTEATNYLVHGISSPIGVGFAMGGTVVNLLFVYGYVPSRSVLLVLSAKLRRCS*
Ga0137393_110343181	3300011271	Vadose Zone Soil	MIGALLAGICLWLLFWAALHKIEEIPYVRDFLSTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTFVNLLFVYGYIPSRSVLVVLSAKLRRCSRA*
Ga0137389_104253471	3300012096	Vadose Zone Soil	NKELQMLLTPSMIGALLAGICLWLLFWAALHKIEEIPYVRDFLSTNQCLEWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTVVNILFVYGYIPSRTVLSVISAKLRRCS*
Ga0137389_105042531	3300012096	Vadose Zone Soil	MIGAVLAGIFLWSLFWAALHKIEEIPYVRDTLSTNQCLDWIEQRPGLTLLLTEVTNYLVHGISSPVGVAFAMGGTIVNMFFVYGYIPSRNVLSVLSARLRRCS*
Ga0137389_113923031	3300012096	Vadose Zone Soil	NKELQMLLTPSMIGALLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTLVNLLFVYGYIPSRSVLLVLSAKLRRCS*
Ga0137388_101337292	3300012189	Vadose Zone Soil	MLLTPTMIGAVLAGIFLWSLFWAALHKIEEIPYVRDTLSTNQCLDWIEQRPGLTLLLTEVTNYLVHGISSPVGVAFAMGGTIVNMFFVYGYIPSRNVLSVLSARLRRCS*
Ga0137388_104566601	3300012189	Vadose Zone Soil	MIGALLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGLAMGGTVINILFVYGYIPSR
Ga0137383_103995331	3300012199	Vadose Zone Soil	MIGALLAGICLWLLFWGALHKVEEIPYVRDFLSTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTLVNLLFVYGYIPSRSVLLVLSAKLRRCS*
Ga0137363_100495825	3300012202	Vadose Zone Soil	MIGALLAGICLWLLFWGALHKVEEIPYVRDFLSTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTMVNLLFVYGYVPSRGVLSIISAKLRRCS*
Ga0137399_105594982	3300012203	Vadose Zone Soil	MLLTPSMIGALLAGICLWLLFWGALHKVEEIPYVRDFISTKLCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTVINILFIYGYIPSRSALSVLSAKLRRCY*
Ga0137380_100462032	3300012206	Vadose Zone Soil	MIGALLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTLVNLLFVYGYIPSRSVLLVLSAKLRRCS*
Ga0137381_100236344	3300012207	Vadose Zone Soil	MLLTPSMIGALLAGICLWLLFWGALHKVEEIPYVRDFLSTNQCLDWILQRPGLTLLLTEATNYLVPGISSPIGVGFAMGGTLVNLLIVYAYIPSRSVLLVLSAKLRRSS*
Ga0137379_101256512	3300012209	Vadose Zone Soil	MIGALLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTFVNLLFDYGYIPSRSVLLVLSAKLRRCS*
Ga0137377_1001263912	3300012211	Vadose Zone Soil	MLLTPSMIGALLAGICLWLLFWGALHKVEEIPYVRDFLSTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTMVNLLFVYGYVPSRSVLSIISAKLRRCS*
Ga0137387_109695632	3300012349	Vadose Zone Soil	MIGALLAGICLWLLFWAFHHKIEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTLVNLLIVYAYIPSRSVLLVLSAKLRRCS*
Ga0137384_103433081	3300012357	Vadose Zone Soil	MIGALLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTLVNLLFVYGYIPSRSVLVVLSAKLRRCS*
Ga0137360_111128271	3300012361	Vadose Zone Soil	MLLTPSMIGALLAGICLWLLFWGALHKVEEIPYVRDFISTNQCLDWIQHRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTMVNLLFVYGYVPSRSLLSVISAKLRRCS*
Ga0137360_111134141	3300012361	Vadose Zone Soil	MIGAFLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTMVNLLFVYGYVPSRGVLSIISAKLRRCS*
Ga0137361_100136343	3300012362	Vadose Zone Soil	MLLTPSMIGALLAGICLWLLFWGALHKVEEIPYVRDFISTNQCLDWIQHRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTMVNLLFVYGYVPSRSVLSIISAKLRRCS*
Ga0137390_109466061	3300012363	Vadose Zone Soil	MLLTPTMIGAVLAGICLWTLFWAALHKVGEIPYVRDILTTNECLDWIQQRPGLTILMTEAVNYIAHGTSPIGVGFAMGGTIVNMLAIYGYIPSRKLLSVIAGKLRTSS*
Ga0137390_109621801	3300012363	Vadose Zone Soil	MIGALLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTFVNLLFVYGYIPSRSVLVVLSAKLRRCS*
Ga0137358_104249212	3300012582	Vadose Zone Soil	MLLTPSMIGALLAGICLWLLFWGALHKVEEIPYVRDFISTKLCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTVINILFIYGYIPSRSALSVLSAKLRRCS*
Ga0137398_105432042	3300012683	Vadose Zone Soil	MIGALLAGICLWLLFWGALHKVEEIPYVRDFISTKLCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTVINILFIYGYIPGRSVLSVLSAKLRRCS*
Ga0137398_107529752	3300012683	Vadose Zone Soil	MIGALLAGICLWLLFWAALHKVEEIPYLRDFLSTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTMVNLLFVYGYVPSRSVLS
Ga0137398_109593061	3300012683	Vadose Zone Soil	MVGAVLAGICLWLLFWAALHKVEEIPYVRDFLSTKQCLDWMQQRRGLTLLLTEAANYLVHGIASPVGVAFAMGGTFVNLLFIYGYIPSRS
Ga0137395_109229111	3300012917	Vadose Zone Soil	MIGALLAGICLWLLFWAFLHKIEEIPYVRDFLSTKQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTLVNLLFVYGYIPSRNVVSVITEKLRRCS*
Ga0137359_109142671	3300012923	Vadose Zone Soil	PSMIGALLAGICLWLLFWAALHKVEEIPYVRDFISTKLCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTVINILFIYGYIPSRSALSVLSAKLRRCS*
Ga0137359_110062152	3300012923	Vadose Zone Soil	MIGALLAGICLWLLFWGALHKVEEIPYVRDFLSTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTMVNLLFVYGYVPSR
Ga0137359_116312382	3300012923	Vadose Zone Soil	TPTMIGALLAGICLWLLFWAALHKVEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTMVNLLFVYGYVPSRSVLSVISAKLRRCS*
Ga0137413_114981961	3300012924	Vadose Zone Soil	MLLTPSMIGALLAGICLWLLFWGALHKVEEIPYVRDFISTKLCLEWIQQRPGLTLLLPEATNYLVHGISSPIGVGFAMGGTVINILFIYGYIPSRSALSVLSAKLRRCS*
Ga0137419_108844052	3300012925	Vadose Zone Soil	MIGALLAGICLWLLFWAALHKIEEIPYVRDFISTKLCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTMVNLLFVYGYVPSRSVLSVISAKLRRCS*
Ga0137416_110901272	3300012927	Vadose Zone Soil	ELQMLLTPSMIGALLAGICLWLLFWGALHKVEEIPYVRDFISTKLCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTVINNLFIYGYIPSRSALSVLSAKLRRCY*
Ga0137404_114679992	3300012929	Vadose Zone Soil	MLLTPSMIGALLAGICLWLLFWGALHKVEEIPYVRDFLSTNQCLDWIQQRPGLTLLLTEVTNYLVHGISSPVGVAFAMGGTLVNMLFVYAYIPSRSVLSVLAAKLRRC
Ga0137407_109605471	3300012930	Vadose Zone Soil	MIGAVLVGICLWTLFWAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILLTEATNYFAHGMSSPIGVGFAMGGTIVNMLVVYGYVPSRRLLSVITAKLRASSSAI
Ga0137410_113646341	3300012944	Vadose Zone Soil	MLLTPSMIGALLAGICLWLLFWGALHKVEEIPYVRDFLSTNQCLDWIQQRPGLTLLLTEATNYQVHGISSPIGVGFAMGGTMVNLLFVYGYVPSRSVLSIISAKLRRCS*
Ga0120127_101682591	3300013503	Permafrost	MVGAVLAGICLWTLFWAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILLTEATNCLAHGISSPVGVGFAMGGTIVNMLAVYGYI
Ga0120135_10382701	3300014054	Permafrost	MLLTPTMVGAILAGICLWTLFWAALHKIEEIPYVRDILATNDFLDWIQQRPGLTILLTEAANYFAHGISSPVGVGFAMGGTIVNMLAVYGYIPSRGLLSVISAKLRTSLVNHST*
Ga0182024_105383814	3300014501	Permafrost	MIGALLAGICLWSMFWAALHKIEEIPGVRDVLSTNQCLEWIEQRPGLTLLLTEATNYLVHGISSPVGVGFAMGGTIVNLLVVYGYIPSRSLVAVIAAKLRRCS*
Ga0182024_117702071	3300014501	Permafrost	MLLTPSMIGALLAGICLWSMFWAALHKIEEIPGVKEFLTTNQCLQWIEQRPGLTLLLTEATNYLVHGISSPVGVGFAMGGTIVNLLVVYGYIPSRSLVAVIAAKLRRCS*
Ga0182024_119146601	3300014501	Permafrost	MLLTPTMVGAILAGICLWTLFWAALHKIAEIPYVRDILTTNDCLDWIQQRPGLTILLTEATNYFAHGISSPIGVGFAMGGTIVNMLAVYGYIPSRGLLSVISAKLRMSLANHST*
Ga0137414_11783501	3300015051	Vadose Zone Soil	MIGAVLAGICLWTLFWAALHKIEEIPYVRDVLTTNDCLDWIQQRPGLTILLTEATNYFAHGMSSPIGVGFAMGGTIVNMLVVYGYIPSRRLLSVITAKLRASSAAI*
Ga0137418_1000758011	3300015241	Vadose Zone Soil	MLLTPSMIGALLAGICLWLLFWGALHKVEEIPYVRDFISTKLCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTVINILFIYGYIPSRSVLSIISAKLRRCS*
Ga0187803_101601592	3300017934	Freshwater Sediment	MLLTPTMIGALLAGICLWSLFWAALHKIEEIPYVRDTLSTNQCLDWIEQRPGLTLLLTEVTNYLVHGISSPIGVAFAMGGTIVNMLFVYGYIPSRNVLSVLSARLRRCS
Ga0187821_104841841	3300017936	Freshwater Sediment	MLLTPSMIGALLAGICLWLMFWAALHKIGDIPYVRDSLTTKQCLDWIQQRPGLTILLTEAANYVVHGISSPIGGGFAMGGTVVNLLFVYGYIPRRSVVSLISARFRRCDEAK
Ga0187805_106419421	3300018007	Freshwater Sediment	MLLTPTMIGAILAGICLWTLFWAALHKIEEIPYVRDILTTNECLDWIQQRPGLTILLTEATNYLTHGISSPIAVGFALGGTIVNMLAIYGYIPSRKLLSVMSAKLHASS
Ga0179594_100131762	3300020170	Vadose Zone Soil	MLLTPSMIGALLAGICLWLLFWGALHKVEEIPYVRDFLSTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTMVNLLFVYGYVPSRSVLSIISAKLRRCS
Ga0210407_106797581	3300020579	Soil	YNMLLTPTMIGAVLAGICLWTLFWAALHKIEEIPYVRDIFTTNDCLDWIQQRPGLTILMTEAANYLAHGTSPIGVGFAMGGTIVNMLAIYGYIPSRQLLSVISAKLHASVSQSA
Ga0210399_111085821	3300020581	Soil	FWAALHKVQEIPYVRDILTTNDCLDWIQQRPGLTILLTEATNYLVHGISSPVGVGFAMGGTIVNMLAVYGYIPSRGLLSVISAKLRKSLVNHST
Ga0210401_102814911	3300020583	Soil	MLLTPTMIGAILAGICLWTLFWAALHKIGEIPYVRDILTTNDCLDWIQQRPGLTILLTEAANYLAHGISSPIGVGFAMGGTVVNMLAIYGYIPSRKLLSVISAKLHASVSQSA
Ga0215015_108173961	3300021046	Soil	MLLTPTMIGALLAGICLWSLFWAALHKIEEIPYVRGTLSTNQCLDWIEQRPGLTLLLTEITNYLVHGISSPVGVAFAMGGTIVNMLFVYGYIPSRNVLSVLSARLRKCS
Ga0179596_105550061	3300021086	Vadose Zone Soil	MLLTPSMIGALLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTFVNLLFVYGYIPSRSVLVVLSAKLRRCSRA
Ga0210396_100431233	3300021180	Soil	MLLTPTMVGAILAGICLWTLFWAALHKIEEIPYVRDIITTNDCLDWIQQRPGLTILLTEATNYLTHGISSPIAVGFALGGTIVNMLAIYGYIPSRKLFSVISAKLRTSS
Ga0210388_107009412	3300021181	Soil	MLLTPTMVGAVLAGICLWTLFWGALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILLTEATNYFAHGISSPIGVGFAMGGTIVNMLAVYGYIPSRGLLSVIAAKLRTSLVNHSA
Ga0210394_101557644	3300021420	Soil	MLLTPSMIGALLAGICLWTLFWASLHKIEEIPGVKEVLTTNQCLEWIAERPGLTLLLTEATNYLVHGISSPVSVGFAMGGTIVNLLVVYGYIPSRSLLAVLSAKLRRCS
Ga0210394_114064501	3300021420	Soil	MLLTPSMMGALLAGICLWSLFWAALHKIEEIPGVKDLLTTNRCLEWIEQRPGLTLLLTEATNYLVHGISSPVGVGFAMGGTIVNMLVVCG
Ga0210384_100131818	3300021432	Soil	MLLTPTMIGAVLAGICLWTLFWAALHKIEEIPYVRDIFTTNDCLDWIQQRPGLTILMTEAANYLAHGTSPIGVGFAMGGTIVNMLAIYGYIPSRQLLSVISAKLHASVSQSA
Ga0210384_108505432	3300021432	Soil	MLLTPTMIGAILAGICLWTLFWAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILLTEAANYFAHGISSPVGVGFAMGGTIVNMLAVYGYIPSRGLLSVISAKLRTSLVNHST
Ga0210390_112049751	3300021474	Soil	MLLTPSMMGALLAGICLWSLFWAALHKIEEIPGVKDLLTTNRCLEWIEQRPGLTLLLTEATNYLVHGISSPVGIGFAMGGTIVNMLVVYGYIPSRSVLAVLCAKLRRSF
Ga0210409_100118889	3300021559	Soil	MLLTPTMIGAVLAGICLWTLFWAALHKIEEIPYVREILTTNDCLDWIQQRPGLTILLTEAANYFAHGISSPVGVGFAMGGTIVNMLAVYGYIPSRGLLSVISAKLRTSLVNHST
Ga0209648_105460641	3300026551	Grasslands Soil	MLLTPSMIGALLAGICLWLLFWAALHKIEEIPYVRDFISTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTLVNLLFVYGYIPSRSVLLVLSAKLRRCS
Ga0209733_10339764	3300027591	Forest Soil	MLFTPTMVGAILAGICLWTLFWAALHKIEEIPYVRDILTTNECLDWIQQRPGLTILMTEAANYLAHGISSPIGVGFAMGGTIVNMLAVYGYIPSRGLLSVISAKLRTSLVNHST
Ga0209076_10221481	3300027643	Vadose Zone Soil	MLLTPSMIGALLAGICLWLLFWGALHKVEEIPYVRDFISTKLCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTVINILFIYGYIPSRSVLSIISAKLRRCS
Ga0209736_10522832	3300027660	Forest Soil	MLLTPTMIGAVLAGICLWTLFWAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILLTEATNYFAHGMSSPIGVGFAMGGTIVNMLVVYGYIPSRRLLSVISAKLRTSSVN
Ga0209009_10819911	3300027667	Forest Soil	WAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILLTEAANYFAHGISSPVGVGFAMGGTIVNMLAVYGYIPSRGLLSVISAKLRTSLVNHST
Ga0209588_10871373	3300027671	Vadose Zone Soil	SMIGALLAGICLWLLFWGALHKVEEIPYVRDFLSTNQCLDWIQQRPGFSLLLTEATNYLVHGISSPIGVGFAMGGTMVNLLFVYGYVPSRSVLSIISAKLRRCS
Ga0209118_10218192	3300027674	Forest Soil	MLLTPTMVGAILAGICLWTLFWAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILLTEAANYVAHGISSPVGVGFAMGGTIVNMLAVYGYIPSRGLLSVISAKLRTSLVNHST
Ga0209180_101769221	3300027846	Vadose Zone Soil	MLLTPSMIGALLAGICLWLLFWAALHKIEEIPYVRDFVSTNQCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTLVNLLFVYGYVPSRSVLLVLSAKLRRCS
Ga0209701_103348272	3300027862	Vadose Zone Soil	MLLTPTMIGAVLAGICLWSLFWAALHKIEEIPYVRDTLSTNQCLDWIEQRPGLTLLLTEVTNYLVHGISSPVGVAFAMGGTIVNMLFVYGYIPSRNVLSVLSARLRRCS
Ga0209579_103278181	3300027869	Surface Soil	MLLTPTMVGAVLAGICLWSLFWAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILMTEAANYLAHGTSPIGVGFAMGGTIVNMLAIYGYIPSRKLLSVISAKLHASASQSA
Ga0209068_101677152	3300027894	Watersheds	MLLTPSMIGAVLAGICLWLLFWTALHKIGEIPYVSDCLTTNQCLDWIQQRPGLTILLSEAANYLVHGISSPIGVGFAMGGTIINLLFVYGHIPSRGVVSLIATRFRRCSEAK
Ga0209488_104683103	3300027903	Vadose Zone Soil	IGAILAGICLWTLFWAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILLTEATNYFANGMSSPIGVGFAMGGTIVNMLVVYGYIPSRRLLSVITAKLRASSSAI
Ga0209488_106017601	3300027903	Vadose Zone Soil	MLLTPSMIGALLAGICLWLLFWGALHKVEEIPYVRDFISTKLCLDWIQQRPGLTLLLTEATNYLVHGISSPIGVGFAMGGTVINILFIYGYIPSRSALS
Ga0209698_107732111	3300027911	Watersheds	SYIMLLTPTMIGAVLAGICLWTLFWAALHKVGEIPYVRDILTTNDCLDWIQQRPGLTILLTEATNYFAHGISSPVGVGFAMGGTIVNMLAVYGYIPSRGLLSVISAKLRTSIVNPST
Ga0209526_105181982	3300028047	Forest Soil	MLLTPTMIGAVLAGICLWTLFWAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILLTEATNYFAHGISSPVGVGFAMGGTIVNMLAVYGYIPSRGLLSVISAKLRTSLVTHST
Ga0222749_100455281	3300029636	Soil	CLWTLFWAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILLTEAANYFAHGISSPVGVGFAMGGTIVNMLAVYGYIPSRGLLSVISAKLRTSLVNHST
Ga0222749_103278321	3300029636	Soil	MLLTPTMIGAILAGICLWTLFWAALHKIEEIPYVRDIFTTNDCLDWIQQRPGLTILMTEAANYLAHGTSPIGVGFAMGGTIVNMLAVYGYIP
Ga0302182_102377971	3300030054	Palsa	MLLTPTMVGAILAGICLWTLFWAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILMTEAANYLAHGTSPIGVGFAMGGTIVNMLAIYGYIPSRKLLSVFYTNLRTSPAGQTT
Ga0170834_1083977671	3300031057	Forest Soil	MLFTPTMVGAILAGICLWTLFWAALHKIEEIPYVRDILTTNECLDWIQQRPGLTILMTEAANYLAHGISSPIGVGFAMGGTIVNMLAVYG
Ga0170824_1279371111	3300031231	Forest Soil	MRLTPTMIGAILAGICLWTLFWAALHKIEEIPYVRDILTTNDCLDWIQQRPGLTILMTEAANYLAHGTSPIGVGFAMGGTIVNMLAIYGYIPSRKLLSVISAKLRTSVSQTA
Ga0310686_1005393853	3300031708	Soil	MLLTPSMMGALLAGICLWSLFWAALHKIEEIPGVKDLLTTNRCLEWIEQRPGLTLLLTEATNYLVHGISSPVGVGFAMGGTIVNMLVVYGYIPSRSVLAVLCAKLRRSF
Ga0310686_1126219811	3300031708	Soil	MLLTPTMIGAILAGICLWTLFWAALHKIGEIPYVRDILTTNDCLDWIQQRPGLTILLTEAANYVAHGISSPIGVGFAMGGTIVNMLAVY
Ga0307479_113956771	3300031962	Hardwood Forest Soil	MLLTPTIIGALLAGVCLWILFWAALHKIEEVPYVRDFVSTNQCLDWIDQRPGLTLLLTEAANYLVHGISSPVGVGFAVGGTIVNILFVYGYVPGRGLLSMISAKLRTCS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094349

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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