Metagenome / Metatranscriptome Family F094307

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094307
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	43 residues
Representative Sequence	MSVARLRLAPVRETMFPSRAPFFRDRLSPRAAEIAAWAEENK
Number of Associated Samples	89
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.39 %
% of genes near scaffold ends (potentially truncated)	95.28 %
% of genes from short scaffolds (< 2000 bps)	82.08 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.302 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (32.075 % of family members)
Environment Ontology (ENVO)	Unclassified (32.075 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.604 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.14% β-sheet: 0.00% Coil/Unstructured: 82.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01230	HIT	6.60
PF00528	BPD_transp_1	5.66
PF13559	DUF4129	3.77
PF13735	tRNA_NucTran2_2	3.77
PF00005	ABC_tran	3.77
PF00203	Ribosomal_S19	3.77
PF03780	Asp23	3.77
PF00814	TsaD	3.77
PF00682	HMGL-like	2.83
PF02686	Glu-tRNAGln	2.83
PF00572	Ribosomal_L13	2.83
PF00890	FAD_binding_2	1.89
PF00420	Oxidored_q2	1.89
PF01148	CTP_transf_1	1.89
PF00208	ELFV_dehydrog	1.89
PF10128	OpcA_G6PD_assem	1.89
PF01209	Ubie_methyltran	1.89
PF00899	ThiF	1.89
PF04055	Radical_SAM	1.89
PF16697	Yop-YscD_cpl	1.89
PF02441	Flavoprotein	1.89
PF11946	DUF3463	0.94
PF02594	DUF167	0.94
PF12849	PBP_like_2	0.94
PF00338	Ribosomal_S10	0.94
PF00498	FHA	0.94
PF00348	polyprenyl_synt	0.94
PF02645	DegV	0.94
PF08352	oligo_HPY	0.94
PF02786	CPSase_L_D2	0.94
PF00483	NTP_transferase	0.94
PF00171	Aldedh	0.94
PF02882	THF_DHG_CYH_C	0.94
PF03466	LysR_substrate	0.94
PF08022	FAD_binding_8	0.94
PF03721	UDPG_MGDP_dh_N	0.94
PF00313	CSD	0.94
PF05746	DALR_1	0.94
PF02771	Acyl-CoA_dh_N	0.94
PF00909	Ammonium_transp	0.94
PF02621	VitK2_biosynth	0.94
PF01523	PmbA_TldD	0.94
PF00175	NAD_binding_1	0.94
PF13489	Methyltransf_23	0.94
PF01979	Amidohydro_1	0.94
PF00496	SBP_bac_5	0.94
PF01597	GCV_H	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0185	Ribosomal protein S19	Translation, ribosomal structure and biogenesis [J]	3.77
COG1214	tRNA A37 threonylcarbamoyladenosine modification protein TsaB	Translation, ribosomal structure and biogenesis [J]	3.77
COG1302	Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family	Function unknown [S]	3.77
COG0533	tRNA A37 threonylcarbamoyltransferase TsaD	Translation, ribosomal structure and biogenesis [J]	3.77
COG0102	Ribosomal protein L13	Translation, ribosomal structure and biogenesis [J]	2.83
COG0721	Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit	Translation, ribosomal structure and biogenesis [J]	2.83
COG2902	NAD-specific glutamate dehydrogenase	Amino acid transport and metabolism [E]	1.89
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	1.89
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	1.89
COG0334	Glutamate dehydrogenase/leucine dehydrogenase	Amino acid transport and metabolism [E]	1.89
COG1872	Uncharacterized conserved protein YggU, UPF0235/DUF167 family	Function unknown [S]	0.94
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.94
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.94
COG1427	Chorismate dehydratase (menaquinone biosynthesis, futalosine pathway)	Coenzyme transport and metabolism [H]	0.94
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.94
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.94
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.94
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	0.94
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.94
COG0751	Glycyl-tRNA synthetase, beta subunit	Translation, ribosomal structure and biogenesis [J]	0.94
COG0686	Alanine dehydrogenase (includes sporulation protein SpoVN)	Amino acid transport and metabolism [E]	0.94
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.94
COG0509	Glycine cleavage system protein H (lipoate-binding)	Amino acid transport and metabolism [E]	0.94
COG0312	Zn-dependent protease PmbA/TldA or its inactivated homolog	General function prediction only [R]	0.94
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.94
COG0190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	Coenzyme transport and metabolism [H]	0.94
COG0142	Geranylgeranyl pyrophosphate synthase	Coenzyme transport and metabolism [H]	0.94
COG0051	Ribosomal protein S10	Translation, ribosomal structure and biogenesis [J]	0.94
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.94
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.30 %
Unclassified	root	N/A	21.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.30 %
Unclassified	root	N/A	21.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.30 %
Unclassified	root	N/A	21.70 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	51.89 %
Unclassified	root	N/A	21.70 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	49.06 %
Unclassified	root	N/A	21.70 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.94 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	29.25 %
Unclassified	root	N/A	21.70 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	10.38 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.89 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	29.25 %
Unclassified	root	N/A	21.70 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	8.49 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.94 %
Chloroflexi bacterium GWC2_70_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium GWC2_70_10	0.94 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	29.25 %
Unclassified	root	N/A	21.70 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.94 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.94 %
Chloroflexi bacterium GWC2_70_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium GWC2_70_10	0.94 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	29.25 %
Unclassified	root	N/A	21.70 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.94 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.94 %
Chloroflexi bacterium GWC2_70_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium GWC2_70_10	0.94 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000880\|AL20A1W_1283790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	694	Open in IMG/M
3300001536\|A1565W1_10462852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	690	Open in IMG/M
3300004156\|Ga0062589_101489075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	665	Open in IMG/M
3300005166\|Ga0066674_10197191	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300005179\|Ga0066684_10461517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	854	Open in IMG/M
3300005181\|Ga0066678_10256326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1133	Open in IMG/M
3300005345\|Ga0070692_10057124	All Organisms → cellular organisms → Bacteria	2045	Open in IMG/M
3300005468\|Ga0070707_100164582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2161	Open in IMG/M
3300005518\|Ga0070699_100019289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5869	Open in IMG/M
3300005539\|Ga0068853_101470054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	660	Open in IMG/M
3300005540\|Ga0066697_10536407	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300005554\|Ga0066661_10679063	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300006031\|Ga0066651_10277107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	892	Open in IMG/M
3300006173\|Ga0070716_100206913	Not Available	1308	Open in IMG/M
3300007255\|Ga0099791_10424077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	642	Open in IMG/M
3300007258\|Ga0099793_10076215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1523	Open in IMG/M
3300009012\|Ga0066710_100047284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	5276	Open in IMG/M
3300009012\|Ga0066710_101097875	All Organisms → cellular organisms → Bacteria	1230	Open in IMG/M
3300009029\|Ga0066793_10006247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	6071	Open in IMG/M
3300009090\|Ga0099827_10002143	All Organisms → cellular organisms → Bacteria	10775	Open in IMG/M
3300009090\|Ga0099827_10054898	All Organisms → cellular organisms → Bacteria	3013	Open in IMG/M
3300009090\|Ga0099827_10749883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	844	Open in IMG/M
3300009090\|Ga0099827_11202562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	659	Open in IMG/M
3300010040\|Ga0126308_10782394	Not Available	660	Open in IMG/M
3300010106\|Ga0127472_1127421	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300010147\|Ga0126319_1253339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	601	Open in IMG/M
3300010335\|Ga0134063_10521024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	597	Open in IMG/M
3300010335\|Ga0134063_10617572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	553	Open in IMG/M
3300010337\|Ga0134062_10469509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	628	Open in IMG/M
3300010399\|Ga0134127_12424964	Not Available	604	Open in IMG/M
3300011107\|Ga0151490_1810139	Not Available	547	Open in IMG/M
3300012010\|Ga0120118_1005119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4089	Open in IMG/M
3300012201\|Ga0137365_11149186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	557	Open in IMG/M
3300012203\|Ga0137399_10087265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2384	Open in IMG/M
3300012206\|Ga0137380_11352914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	597	Open in IMG/M
3300012206\|Ga0137380_11623991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	531	Open in IMG/M
3300012208\|Ga0137376_10372924	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300012209\|Ga0137379_10574049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium GWC2_70_10	1035	Open in IMG/M
3300012209\|Ga0137379_10684620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	931	Open in IMG/M
3300012211\|Ga0137377_11473320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	607	Open in IMG/M
3300012350\|Ga0137372_10415578	Not Available	1016	Open in IMG/M
3300012351\|Ga0137386_10994778	Not Available	597	Open in IMG/M
3300012353\|Ga0137367_10306797	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300012356\|Ga0137371_11115679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	592	Open in IMG/M
3300012356\|Ga0137371_11129468	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300012356\|Ga0137371_11417636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509	Open in IMG/M
3300012357\|Ga0137384_10102050	All Organisms → cellular organisms → Bacteria	2394	Open in IMG/M
3300012359\|Ga0137385_10556357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	967	Open in IMG/M
3300012359\|Ga0137385_11283133	Not Available	595	Open in IMG/M
3300012376\|Ga0134032_1069320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	609	Open in IMG/M
3300012381\|Ga0134026_1239202	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300012532\|Ga0137373_10341982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1177	Open in IMG/M
3300012922\|Ga0137394_11581609	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300012922\|Ga0137394_11612689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	505	Open in IMG/M
3300012927\|Ga0137416_10125349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1973	Open in IMG/M
3300012955\|Ga0164298_10685371	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300012961\|Ga0164302_10117553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1505	Open in IMG/M
3300015359\|Ga0134085_10549546	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300017792\|Ga0163161_10657191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	869	Open in IMG/M
3300018056\|Ga0184623_10316055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	703	Open in IMG/M
3300018066\|Ga0184617_1007478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2056	Open in IMG/M
3300018066\|Ga0184617_1223709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	562	Open in IMG/M
3300019878\|Ga0193715_1079916	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300020022\|Ga0193733_1081392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	908	Open in IMG/M
3300021073\|Ga0210378_10320941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	580	Open in IMG/M
3300021344\|Ga0193719_10000540	All Organisms → cellular organisms → Bacteria	14384	Open in IMG/M
3300022756\|Ga0222622_10907951	Not Available	646	Open in IMG/M
3300025899\|Ga0207642_10118784	Not Available	1360	Open in IMG/M
3300026306\|Ga0209468_1149369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	614	Open in IMG/M
3300026312\|Ga0209153_1058669	All Organisms → cellular organisms → Bacteria → Proteobacteria	1377	Open in IMG/M
3300026313\|Ga0209761_1310564	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300026315\|Ga0209686_1169505	Not Available	623	Open in IMG/M
3300026326\|Ga0209801_1242146	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300027561\|Ga0209887_1040316	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300028704\|Ga0307321_1073546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	670	Open in IMG/M
3300028708\|Ga0307295_10191040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300028709\|Ga0307279_10022786	Not Available	876	Open in IMG/M
3300028715\|Ga0307313_10051293	Not Available	1209	Open in IMG/M
3300028717\|Ga0307298_10255493	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300028718\|Ga0307307_10030400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1532	Open in IMG/M
3300028718\|Ga0307307_10252156	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300028721\|Ga0307315_10228117	Not Available	581	Open in IMG/M
3300028744\|Ga0307318_10135457	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300028755\|Ga0307316_10029123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1796	Open in IMG/M
3300028768\|Ga0307280_10057043	Not Available	1232	Open in IMG/M
3300028771\|Ga0307320_10151733	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300028784\|Ga0307282_10293762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	783	Open in IMG/M
3300028787\|Ga0307323_10290292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	588	Open in IMG/M
3300028787\|Ga0307323_10325397	Not Available	551	Open in IMG/M
3300028791\|Ga0307290_10060112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1375	Open in IMG/M
3300028799\|Ga0307284_10138365	Not Available	933	Open in IMG/M
3300028803\|Ga0307281_10185972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	742	Open in IMG/M
3300028807\|Ga0307305_10164254	Not Available	1024	Open in IMG/M
3300028807\|Ga0307305_10344893	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300028811\|Ga0307292_10225448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	774	Open in IMG/M
3300028819\|Ga0307296_10486135	Not Available	675	Open in IMG/M
3300028828\|Ga0307312_10030404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3142	Open in IMG/M
3300028878\|Ga0307278_10386479	Not Available	615	Open in IMG/M
3300028881\|Ga0307277_10010089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	3635	Open in IMG/M
3300028881\|Ga0307277_10027326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2258	Open in IMG/M
3300028885\|Ga0307304_10593848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	512	Open in IMG/M
3300031226\|Ga0307497_10560472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.17%
Host-Associated	Host-Associated	2.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.57%
Aquatic	Environmental → Aquatic	6.60%
Plants	Host-Associated → Plants	2.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.57%
Sediment	Environmental → Aquatic → Sediment	4.72%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.83%
Freshwater	Environmental → Aquatic → Freshwater	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.72%
Loam	Environmental → Terrestrial → Soil → Loam	4.72%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.94%
Sand	Environmental → Terrestrial → Soil → Sand	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	67.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.72%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	32.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	26.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.49%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.60%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.77%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.94%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000880	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-65cm-20A)- 1 week illumina	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010106	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012376	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012381	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013765	Permafrost microbial communities from Nunavut, Canada - A30_80cm_6M	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028709	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_118	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AL20A1W_12837901	3300000880	Permafrost	MSVAYLRFAPPVRETMFPSRVPFFSDRLSPRAAEIAAW
A1565W1_104628521	3300001536	Permafrost	MSVAYLRFAPPVRETMFPSRVPFFSDRLSPRAAEIAA
Ga0062589_1014890752	3300004156	Soil	MSVARLRLVPVRETMFRSRAPFFRCGLSPRAAEIAAWAEEEE
Ga0066674_101971912	3300005166	Soil	MNVVRLRLAPVRETMFPSRAPFFKDRLSPRAAEIAAWAEESKRGNL
Ga0066684_104615173	3300005179	Soil	MSVARFQLAPVRETMFPSRAPFFRERFGLRAAAIAARAED
Ga0066678_102563262	3300005181	Soil	MSVARLRLAHVGETMFPPRTPSFMCRLSPRAAEIAACAEENT
Ga0070692_100571241	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSVGRLRLASVRETMFPSRAPFFRDRLNPRAAEIAAWAEE
Ga0070707_1001645821	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VNVARLRLAPVRETMFPSRAPFFRDRLSPRAAEIAAWAEENE
Ga0070699_1000192891	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSVARLRLAPVRETMFPSRAPFLRDRLSARGVATAAANAEEKE
Ga0068853_1014700541	3300005539	Corn Rhizosphere	VSVARLRLAPVRETMFPSRAPFFRCGLGPRAAEIAAWAEEKERGNLPVSP
Ga0066697_105364071	3300005540	Soil	MSVARLRLAPARETMSPSRAPFFRDRLGPGAAEITACAEE
Ga0066661_106790632	3300005554	Soil	MSVARLRLAPARETMFPSRAPFFRDRLGPGAAEITACAEE
Ga0066651_102771073	3300006031	Soil	MTVARLRLAPVRETMFPSRAPFFRNRLSPRAAEIAAWAEENKRGNRTVS
Ga0070716_1002069131	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSVGRLRLASVRETMFPSRAPFFRDRLNPRDAEIAAWAEENTRGNLPV
Ga0099791_104240771	3300007255	Vadose Zone Soil	MNVARLWLAPVRETMFPSRAPFFRGRLGSRAAEIAACAEEKERGN
Ga0099793_100762151	3300007258	Vadose Zone Soil	MIVARLRLAPVRETMFPSRALFFRDRLSPRAAEIAA
Ga0066710_1000472841	3300009012	Grasslands Soil	MIFLARLRLAPVRETMFPSRAPFFRDRLSPRAAEIAAW
Ga0066710_1010978753	3300009012	Grasslands Soil	MTAVARLRLARVRETMFPSRAPFFRDRLSSRAAEIAAWAEENKRGNLPVSP
Ga0066793_100062477	3300009029	Prmafrost Soil	MSVARLRLAPTRATMFPSGAPFFLNARLGPRAAHVAALA
Ga0099827_1000214314	3300009090	Vadose Zone Soil	VIVARLRLAPVRETMFPSRAPFFRFRLSPRAAEIAAWAEENKRGNLPVSP
Ga0099827_100548984	3300009090	Vadose Zone Soil	MSVTHLRFVPVRETMFPSRAPFFRDRLSPRAAEIAAWAEE
Ga0099827_107498833	3300009090	Vadose Zone Soil	MSVARLRLAPVGETMFPPRAPFFRVRLSPRGAPVAACAE
Ga0099827_112025621	3300009090	Vadose Zone Soil	MSVARLRLAPVGETMFPPRAPFLRVRLSPRGAPVAACAEERKRGNLPVS
Ga0126308_107823941	3300010040	Serpentine Soil	MSVARLRLAPVRETMFPLRDPFFVSRLSPRAAAIARCAEERVWGNLP
Ga0127472_11274211	3300010106	Grasslands Soil	MSIARLTLALVGETMFPPRSAPFFGDRLSTRAAEIAACAEERE
Ga0126319_12533392	3300010147	Soil	MSVARLRLAPVRETMFPSRAPFFKCRLSPRAAEIAAWAEEKEGGNLPVSSY
Ga0134063_105210243	3300010335	Grasslands Soil	MSVARFQLAPVRETMFPSRAPFFRERFGLRAAAIAARA
Ga0134063_106175722	3300010335	Grasslands Soil	MTVARLRLAPVRETMFPSRAPFFRGRLSPRAAEIAACAE
Ga0134062_104695091	3300010337	Grasslands Soil	MIVARLRLAPVRETMFPSRALFFRSRLSARAAEIAACAEEREWGN
Ga0134127_124249641	3300010399	Terrestrial Soil	MSVAYLRFAPVRETMFPSRAPFFRDRLSAHGVATAAVHAEEKEGGNLPI
Ga0151490_18101392	3300011107	Soil	MMSVARLRLAPVRETMFPLRAPFFRCGLGPRAAEIAAWAE
Ga0120118_10051197	3300012010	Permafrost	MSVVRLRLTLVRETMFPSRAPFFRDRLSARGVATAAAYTEEKERGGHPALPLPP
Ga0137382_109184311	3300012200	Vadose Zone Soil	MTVARLRLAPVRESMFPSRAPFFRDRLSVRGVATPAANAEEQEWANLPVSA
Ga0137365_111491863	3300012201	Vadose Zone Soil	MSVARLRLAPVRETMFRPRAPFLRNRLNPRAAEIAAWAEENKRGNRTVSP
Ga0137399_100872651	3300012203	Vadose Zone Soil	MNVARLRLAPVRETMFPSRAPFFRDRLSPRAAEIAAC
Ga0137380_113529141	3300012206	Vadose Zone Soil	MSVARLRLAPVRETMFPSRAPFFRDRLSPRAAEIAAWAEENK
Ga0137380_116239911	3300012206	Vadose Zone Soil	MSVARLRLAPARETMFPSRAPFFKDRLSPRDIATAAARAEEKERGNLP
Ga0137376_103729243	3300012208	Vadose Zone Soil	MTAVARLRLARVRETMFPSRAPFFRDRLSSRAAEIAAWAEENKRGNLPVS
Ga0137379_105740492	3300012209	Vadose Zone Soil	MTVARLRLAPVGETVFPPRAPFFKVGPNPRGAQVAACAQDR
Ga0137379_106846203	3300012209	Vadose Zone Soil	MSVVRFQLTPVRETMFPSRAPFFRYRLSPRAAEIAAWAEEKEGGN
Ga0137377_114733203	3300012211	Vadose Zone Soil	LSVTRLRLVPVRETMFPSRAPFFRDRLSPRAAEIAAWAEENER
Ga0137372_104155782	3300012350	Vadose Zone Soil	MNVARLRLAPVRETMFPSRAPFFRDRLSPRAAEIAAWAEE
Ga0137386_109947782	3300012351	Vadose Zone Soil	MIFLARLRLAPVRETMFPSRAPFFKDRLSPRDIATAAARAEEKERG
Ga0137367_103067972	3300012353	Vadose Zone Soil	MNVARLRLAPVRETMFPSRAPFFRDRLGPRAAEIAAWAE
Ga0137371_111156791	3300012356	Vadose Zone Soil	MSVARLRLALMRETMFPSRAPFFRDRLSPRAAEIAAWA
Ga0137371_111294682	3300012356	Vadose Zone Soil	MTVARLRLAPVRETMFPSRAPFFRDRLSPRAAEIAA
Ga0137371_114176363	3300012356	Vadose Zone Soil	MSLARLRLAPVRETMFPSRAPFFRDRLSTRAAEIAACAEDKQGGKL
Ga0137384_101020501	3300012357	Vadose Zone Soil	MNVARLRLAPVRETMFPPRAPFFKCRLAARAAEIAATGEEKEA*
Ga0137385_105563571	3300012359	Vadose Zone Soil	MNVARLRLAPVRETMFPSRAPFFRYRLSPRAAEIAA
Ga0137385_112831331	3300012359	Vadose Zone Soil	MIFLARLRLAPVRETMFPSRAPFFRDRLSPRAAEIAAWAEENKG
Ga0134032_10693202	3300012376	Grasslands Soil	MTVTHRRFVPVRETMFPSRAPFFGHRLSTRAAEIAACAEENKRGNLPVSP
Ga0134026_12392022	3300012381	Grasslands Soil	MSIARLTLALVGETMFPPRSAPFFGDRLSTRAAEIAACAEERERGNLSVSP
Ga0137373_103419821	3300012532	Vadose Zone Soil	MSVARLRLAPVGETMFPLRDPFLRSRPSSRAAEIAARAEEKGGGNPPISP
Ga0137394_115816092	3300012922	Vadose Zone Soil	VSVARLRLAPVRETMFPSRAPFFGDRLSSRAAEIAACAEERERGNL
Ga0137394_116126891	3300012922	Vadose Zone Soil	MTVARLRLAPVRETMFPSRAPFFRDRLSPRAAEIAAWAEEKKG
Ga0137416_101253493	3300012927	Vadose Zone Soil	MSVARLRLVPVRETMFPSRAPFFRGRLSPRAAEIAAWAEENMRGNL
Ga0164298_106853711	3300012955	Soil	MSVARLRLATAGETMSPPRAPFLRSRLSPRAAEIAAWAKENKRGNLP
Ga0164302_101175533	3300012961	Soil	MNVARLRLAPVRETMFPSRAPFFRDRLSPRAAEIAAWAEET
Ga0120172_100033624	3300013765	Permafrost	MTMVARLRLAPVRETMFASRAPFFRDRLSARGVATAAANAEDKVGGEK
Ga0134085_105495462	3300015359	Grasslands Soil	MSIARLSLALAGETMFPPRSAPFFGDRLSTRAAEIAACAEERERGNLSVSP
Ga0163161_106571912	3300017792	Switchgrass Rhizosphere	MSVGRLRLDPVRETMFPSRAPFFRDRLNPRAAEIAAWAEENTRG
Ga0184608_100039806	3300018028	Groundwater Sediment	MSVARLRLALVRETMFPSRAPFFRDRISTPGVANTAARTEDSDGAC
Ga0184623_103160551	3300018056	Groundwater Sediment	MTVARLRLAPVGETIFPPRAPFFRSRLSTRAAEIAA
Ga0184617_10074781	3300018066	Groundwater Sediment	MSVARRRLAPVRETMFPSRAPFFRDRLSTRGVATAAARAE
Ga0184617_12237092	3300018066	Groundwater Sediment	MNVARLRLAPVRETMFPSRAPFFRDRLNPRAAAIAAWAEEKEGG
Ga0193715_10799163	3300019878	Soil	MSVARLRLAPVRETMFPSRAPIFGDRLSPRAAAIA
Ga0193733_10813921	3300020022	Soil	VIVARLRLAPVRETMFPSRAPFFRDRLSPRAAEIAAWA
Ga0210378_103209411	3300021073	Groundwater Sediment	MNVARLRLAPVRETMFPSRAPFFRDRLNPRAAAIAAWAEEKEGGNLPVSPY
Ga0193719_1000054014	3300021344	Soil	MSVARLRLAPVRETMFPSRAPFLRDRLSPRAAELAAWAE
Ga0222622_109079511	3300022756	Groundwater Sediment	MSVAPLQLAPVRETMFPSRAPFFRGGLGLRAAEIAAQTGEDERGNLTV
Ga0207642_101187843	3300025899	Miscanthus Rhizosphere	MSVARLRLAPVRETMFSSRAPFFRDRLDPRAAEIAARVEETQWGNLPV
Ga0209468_11493693	3300026306	Soil	MSVVRFQLTPVRETMFRSRAPFFRDRLSPRATEIAAWAE
Ga0209153_10586693	3300026312	Soil	MSVARLRLAPVGETMFPLRDPFFRARLRARAAEIAA
Ga0209761_13105642	3300026313	Grasslands Soil	MSLARLRLARVRKTMFPSRAPCFRYRLHPRAAEIAASAEEQE
Ga0209686_11695051	3300026315	Soil	MSFVARLQLAPVGETMFPLRDPFFRDRLSPRAAAIAADAEET
Ga0209801_12421461	3300026326	Soil	MSLARLRLARVRKTMFPSRAPFFRYRLHPRAAEIAAWAEEKERGKLTVSP
Ga0209887_10403161	3300027561	Groundwater Sand	MSVARLRLAPVGETMFPLRNPFFRSRLSPGAAEIAACAE
Ga0307321_10735461	3300028704	Soil	MSVTHLRFVPVRETMFPSRAPFFRDRLNARSVATAAASAEEKERGNLP
Ga0307295_101910401	3300028708	Soil	MSVARLRLAPVRETMFPSRAPIFGDRLSPRAAEIAAW
Ga0307279_100227862	3300028709	Soil	MSVARLQLAPVRETMFPSRAPFFRGRLSPRAAEIAAWAEEKERGNLTV
Ga0307313_100512931	3300028715	Soil	MSVARLQLAPVRETMFPSRAPFFRGRLSPRAAEIAAWAEEKESG
Ga0307298_102554932	3300028717	Soil	VIARLRLAPVRETMFPSRAPFFRDRVNPRAAEIAAWAEENKRGNLPVSP
Ga0307307_100304003	3300028718	Soil	MSVARLRLAPVRETMFPSRAPFFRDRLSPRAAEIAAWAEENKRGNRT
Ga0307307_102521561	3300028718	Soil	VIVARLRLAPVRETMFPSRAPFFRDRLSPRAAEIAAWAKENKR
Ga0307315_102281171	3300028721	Soil	MTVARLRLALVRETMFLSRAPFFKGGLSSRAAEIAACAEEKGWGNRTVSPA
Ga0307318_101354573	3300028744	Soil	MSVARLRLAPVRETMFPSRAPFFRDRLSTRAAEIAACAEDRDVACD
Ga0307316_100291233	3300028755	Soil	MSVARLRLAPVRETMFPSRAPIFGDRLSPRAAEIAAWVEEKKRGSLPVS
Ga0307316_101631471	3300028755	Soil	MSVARLRLAPARETMFPPRAPFFKDRLSAHDMATAAAHAEEKE
Ga0307280_100570431	3300028768	Soil	MSVARLRLARVRETMFPSRAPFFRDRLSSRAAEIAARAEEKER
Ga0307320_101517331	3300028771	Soil	MNVARLRLAPVWETMFPSRAPFFRDRPSPRAAEIAAWAG
Ga0307282_102937622	3300028784	Soil	VNVARLRLAPVRETMFPSRAPFFRDRLSPRAAEIAAC
Ga0307323_102902921	3300028787	Soil	MSVARLRLTPVRETMFPSRAPFFRDRLSTRHVATAAASAEEKERGNLP
Ga0307323_103253972	3300028787	Soil	MSVARLRLARVRETMFPSRAPFFRDRLSSRAAEIAARAEEKERGNLT
Ga0307290_100601122	3300028791	Soil	MTVARLRLAPVGETMFPPRAPFFRDRLSARAAEIAAGAEEKEGGNLP
Ga0307284_101383651	3300028799	Soil	MSVARLRLAPVRETMFPSRAPFFRDRLNPRAAEIAAWAEETE
Ga0307281_101859722	3300028803	Soil	MSVAHLRLAPVRETMFPSRAPFFRDRLDPRAAEIAAWAEENKRGNLPVSPF
Ga0307305_101642541	3300028807	Soil	MSVARLQLAPVRETMFPSRAPFFRGRLSPRAAEIAAWAEEKE
Ga0307305_103448931	3300028807	Soil	VIARLRLAPVRETMFPSRAPFFRDRVNPRAAEIAAWAEENKRG
Ga0307292_102254481	3300028811	Soil	MAVARMLAPVRETMFPSRAPFFWNRLSARAVATAAANAEEKEGGNFPVSPQ
Ga0307296_104861351	3300028819	Soil	MSVARLRLAPVRETMFPSRAPFFRDRLNPRAAEIAAWAEETEGG
Ga0307312_100304041	3300028828	Soil	MSVARLRLARVRETMFPSRAPFFRDGLSSRAAEIAAC
Ga0307278_103864792	3300028878	Soil	MIFVARLRLAPVRETMFPSRAPFFRGRLNPRAAEIAAWVEEK
Ga0307277_100100891	3300028881	Soil	MSVVRFQLTPVRETMFPSRAPFFRDRLSPRAAEIAAWAEEKE
Ga0307277_100273264	3300028881	Soil	MSVARLRLAPVRETMFPSRAPFFRGRLNPRAAEIAAWA
Ga0307304_105938483	3300028885	Soil	MSVARLRLAPVRETMFPSRAPFFSDRLGSRAAQIAAWA
Ga0307497_105604722	3300031226	Soil	MSVARLRLAPVRETMFPSRAPFFRDRLDPRAAEIAAWAEETKRGN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094307

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences