Metagenome / Metatranscriptome Family F094304

Overview

Basic Information

• Family ID: F094304
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 106
• Average Sequence Length: 40 residues
• Representative Sequence: MLPETLAPAAEILPSLTVSVELAVGSQLPLFVTMVTFQVPS
• Number of Associated Samples: 101
• Number of Associated Scaffolds: 106

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 62.26 %
• % of genes near scaffold ends (potentially truncated): 55.66 %
• % of genes from short scaffolds (< 2000 bps): 84.91 %
• Associated GOLD sequencing projects: 96
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (70.755 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.151 % of family members)
• Environment Ontology (ENVO): Unclassified (23.585 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (49.057 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Fibrous
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 26.09%
  Coil/Unstructured: 73.91%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01042	Ribonuc_L-PSP	15.09
PF00551	Formyl_trans_N	10.38
PF00656	Peptidase_C14	1.89
PF00291	PALP	0.94
PF04392	ABC_sub_bind	0.94
PF06776	IalB	0.94
PF02774	Semialdhyde_dhC	0.94
PF01471	PG_binding_1	0.94
PF12833	HTH_18	0.94
PF04235	DUF418	0.94
PF00892	EamA	0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	15.09
COG4249	Uncharacterized conserved protein, contains caspase domain	General function prediction only [R]	1.89
COG0002	N-acetyl-gamma-glutamylphosphate reductase	Amino acid transport and metabolism [E]	0.94
COG0136	Aspartate-semialdehyde dehydrogenase	Amino acid transport and metabolism [E]	0.94
COG2311	Uncharacterized membrane protein YeiB	Function unknown [S]	0.94
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.94
COG5342	Invasion protein IalB, involved in pathogenesis	General function prediction only [R]	0.94

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.75 %
Unclassified	root	N/A	29.25 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.75 %
Unclassified	root	N/A	29.25 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.75 %
Unclassified	root	N/A	29.25 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	70.75 %
Unclassified	root	N/A	29.25 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	68.87 %
Unclassified	root	N/A	29.25 %

Level 6

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	68.87 %
Unclassified	root	N/A	29.25 %

Level 7

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	68.87 %
Unclassified	root	N/A	29.25 %

Level 8

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	66.98 %
Unclassified	root	N/A	29.25 %

Level 9

Name	Rank	Taxonomy	Distribution
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	29.25 %
Unclassified	root	N/A	29.25 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.77 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.25 %
Bradyrhizobium sp. STM 3809	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	25.47 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.77 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.94 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.94 %
Bradyrhizobium sp. WSM2254	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM2254	0.94 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	0.94 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300002245|JGIcombinedJ26739_100327438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1414
3300005434|Ga0070709_11568245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	536
3300005447|Ga0066689_10642378	Not Available	667
3300005519|Ga0077119_10278400	Not Available	652
3300005529|Ga0070741_10004396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	32968
3300005529|Ga0070741_10267073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1622
3300005554|Ga0066661_10218585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1181
3300005586|Ga0066691_10357553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	865
3300005614|Ga0068856_100043735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	4406
3300005944|Ga0066788_10192254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	529
3300005993|Ga0080027_10079226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	1215
3300006028|Ga0070717_10005326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	9376
3300006050|Ga0075028_100096168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1504
3300006173|Ga0070716_100259091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1189
3300006358|Ga0068871_100992101	Not Available	782
3300006358|Ga0068871_101147602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	728
3300006871|Ga0075434_100675889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1050
3300007255|Ga0099791_10164274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1041
3300009093|Ga0105240_10393777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1562
3300009551|Ga0105238_11051991	Not Available	836
3300010046|Ga0126384_12075553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	545
3300010359|Ga0126376_10326112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1348
3300010360|Ga0126372_11620665	Not Available	686
3300010371|Ga0134125_10025162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6630
3300010376|Ga0126381_103988842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	575
3300010866|Ga0126344_1147343	Not Available	575
3300011120|Ga0150983_14300504	All Organisms → cellular organisms → Bacteria → Proteobacteria	1525
3300012010|Ga0120118_1085594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	772
3300012202|Ga0137363_10946939	Not Available	731
3300012206|Ga0137380_11644390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	526
3300012207|Ga0137381_10792091	Not Available	822
3300012357|Ga0137384_10663074	Not Available	849
3300012361|Ga0137360_10064854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2681
3300012395|Ga0134044_1139120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	655
3300012582|Ga0137358_10270403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1155
3300012909|Ga0157290_10030282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1266
3300012925|Ga0137419_11611395	Not Available	552
3300012960|Ga0164301_10650988	Not Available	786
3300013104|Ga0157370_10361367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1338
3300013105|Ga0157369_10242237	All Organisms → cellular organisms → Bacteria → Proteobacteria	1883
3300013105|Ga0157369_10316370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1623
3300014325|Ga0163163_10038854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM2254	4641
3300014499|Ga0182012_10356013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	975
3300014657|Ga0181522_10024800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3284
3300015089|Ga0167643_1000756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3813
3300015372|Ga0132256_102805417	Not Available	585
3300016319|Ga0182033_10593858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	961
3300016319|Ga0182033_12150160	Not Available	509
3300016445|Ga0182038_10188885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1611
3300017947|Ga0187785_10002370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6210
3300017973|Ga0187780_10323854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1086
3300017975|Ga0187782_11538470	Not Available	524
3300018058|Ga0187766_10770405	Not Available	670
3300018090|Ga0187770_11539599	Not Available	542
3300020069|Ga0197907_10455326	Not Available	957
3300020081|Ga0206354_11505024	Not Available	721
3300020580|Ga0210403_11384087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	534
3300021168|Ga0210406_10002595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	20503
3300021178|Ga0210408_10012638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6936
3300021405|Ga0210387_10283812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1454
3300021441|Ga0213871_10035005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1326
3300021559|Ga0210409_11449598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	562
3300021861|Ga0213853_10768885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4125
3300021861|Ga0213853_11120405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	737
3300022467|Ga0224712_10194838	Not Available	919
3300022523|Ga0242663_1120768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	540
3300022530|Ga0242658_1095105	Not Available	706
3300022531|Ga0242660_1011942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1502
3300022533|Ga0242662_10286906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	545
3300025664|Ga0208849_1001381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	17126
3300025906|Ga0207699_11310222	Not Available	536
3300025910|Ga0207684_10170011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1879
3300025912|Ga0207707_10050646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3617
3300025924|Ga0207694_10334900	Not Available	1251
3300025939|Ga0207665_10389100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1060
3300025981|Ga0207640_11577525	Not Available	591
3300026281|Ga0209863_10026653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1762
3300026304|Ga0209240_1162906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	684
3300026305|Ga0209688_1049982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	788
3300026335|Ga0209804_1212064	Not Available	788
3300026942|Ga0207783_1019755	Not Available	665
3300027528|Ga0208985_1023010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	1207
3300027591|Ga0209733_1060180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	996
3300027635|Ga0209625_1060646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	845
3300027817|Ga0209112_10037412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1455
3300027829|Ga0209773_10279843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	697
3300028566|Ga0302147_10237298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	610
3300030906|Ga0302314_10791498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	950
3300030990|Ga0308178_1170817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	512
3300030997|Ga0073997_12073060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	874
3300031082|Ga0308192_1028698	Not Available	761
3300031249|Ga0265339_10503947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	559
3300031524|Ga0302320_11407304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	694
3300031543|Ga0318516_10010187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4514
3300031590|Ga0307483_1017462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	682
3300031668|Ga0318542_10053861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1835
3300031708|Ga0310686_102237249	Not Available	517
3300031718|Ga0307474_11561614	Not Available	519
3300031719|Ga0306917_10653397	Not Available	827
3300031799|Ga0318565_10609372	Not Available	525
3300031910|Ga0306923_10031233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5749
3300031941|Ga0310912_10331545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1180
3300032805|Ga0335078_10344336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1983
3300032893|Ga0335069_11148435	Not Available	853
3300032954|Ga0335083_10190573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1888
3300033290|Ga0318519_11039922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3809	509

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.91%
Host-Associated	Host-Associated	15.09%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.19%
Plants	Host-Associated → Plants	15.09%
Aquatic	Environmental → Aquatic	4.72%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.43%
Freshwater	Environmental → Aquatic → Freshwater	3.77%
Roots	Host-Associated → Plants → Roots	3.77%
Peat	Environmental → Terrestrial → Peat	2.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.89%
Sediment	Environmental → Aquatic → Sediment	0.94%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.83%
Loam	Environmental → Terrestrial → Soil → Loam	13.21%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Epiphytes	Host-Associated → Plants → Roots → Epiphytes	0.94%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.53%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.66%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Roots → Epiphytes → Unclassified	0.94%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.15%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.66%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.72%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.83%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	1.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.89%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.89%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.89%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.94%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.94%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.94%
Arabidopsis Root	Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root	0.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.94%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental
3300005519	Combined assembly of arab plate scrape CL_Col (Combined Assembly)	Host-Associated
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental
3300012395	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental
3300015089	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8A, Adjacent to main proglacial river, end of transect (Watson river))	Environmental
3300015372	Soil combined assembly	Host-Associated
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental
3300025664	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)	Environmental
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental
3300026942	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 63 (SPAdes)	Environmental
3300027528	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)	Environmental
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental
3300027817	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)	Environmental
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental
3300028566	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2	Environmental
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental
3300030997	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3B (Eukaryote Community Metatranscriptome)	Environmental
3300031082	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_193 (Metagenome Metatranscriptome)	Environmental
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental
3300031590	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)	Environmental
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1003274382	3300002245	Forest Soil	MLPETLAPAPEILPSLTVKVELAVGSQLPLLVTMVTFQSPS*
Ga0070709_115682452	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MLPDTFAPAAEILPSVTISVELAVGSQLPLFVTMVTFQVPS*
Ga0066689_106423782	3300005447	Soil	MLPETSPPAAEILPSVTVKVELAVGSQVPLLVTMVTCQSPS
Ga0077119_102784002	3300005519	Arabidopsis Root	MVPETLAPGAVILPSETVSMELAVGSQEPVLVTMVTCQLP
Ga0070741_1000439627	3300005529	Surface Soil	MLPETLAPAAEILPSLTVSVELAVGSQLPLFVTMVTFQVPS*
Ga0070741_102670731	3300005529	Surface Soil	MLPETLAPAAEILPSATVSVELAVCSQLPVLVTIVTFQT
Ga0066661_102185851	3300005554	Soil	MLPETSPPAAEILPSVTVKVELAVGSQLPLLVTMVTCQSPS
Ga0066691_103575531	3300005586	Soil	MLPETSPPAAEILPSVTVKVELAVGSQLPLLVTMVTCQSP
Ga0068856_1000437357	3300005614	Corn Rhizosphere	MLPVTSAPAAEIFPSVMVSVERVSGSQLPVFVTTFTLQSPS*
Ga0066788_101922542	3300005944	Soil	MLPVTSAPAPEILPSATVSVERADGSQLPVLVTIVTLQR
Ga0080027_100792261	3300005993	Prmafrost Soil	MLPEMSAPAAETLPSATVSVERVEGSQLPVFVTTVTFQSPS*
Ga0070717_100053262	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLPETLAPAPEILPSATVKVELAVGSQLPLLVTMVTFQSPS*
Ga0075028_1000961682	3300006050	Watersheds	MLPETLAPGPEILPSATVKVELAVGSQLPLLVMMVTFQSPS*
Ga0070716_1002590914	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MLPETFAPGAEILPSVTVSVELAVGSQPPLFVTMV
Ga0068871_1009921012	3300006358	Miscanthus Rhizosphere	MLPETSAPPPEILPSVTVTVELALGSQLPLFVTIV
Ga0068871_1011476023	3300006358	Miscanthus Rhizosphere	MLPDTLVPGPEILPSVTVRVELAVGSQVPVLVTIVTC
Ga0075434_1006758891	3300006871	Populus Rhizosphere	MLPEMSAPAAEILPSVTVSVELAVGSQLPLFVTMVTFQ
Ga0099791_101642743	3300007255	Vadose Zone Soil	MLPETLAPAAEILPSATVSVERVDGSQVPVLVTIVTFQS
Ga0105240_103937773	3300009093	Corn Rhizosphere	MLPETLAPAAEILPSVTVSVELAVCSQLPVFVTMVTFQTPS*
Ga0105238_110519912	3300009551	Corn Rhizosphere	MVPETLAPAAEILPSVTVSVELAVGSQLPLFVTMVT
Ga0126384_120755531	3300010046	Tropical Forest Soil	MLPETFAPAAEILPSLTVSVELAVGSQLPLFVTIVTFQTPSNGC*
Ga0126376_103261121	3300010359	Tropical Forest Soil	MLPETLAPFAEILPSETVRVELAVGSQVPVFVTIVTCHSPS
Ga0126372_116206652	3300010360	Tropical Forest Soil	MLPETSAPAAEILPSVTVSVELAVGSQLPLFVTIVTLQTPSKGCW
Ga0134125_100251626	3300010371	Terrestrial Soil	MRPETFAPAAEILPSVTVSVEVAVGSQLPVLVTMVTFQTPS*
Ga0126381_1039888421	3300010376	Tropical Forest Soil	MLPETFAPADEILPSLTVTVELAEGSQLPLFVTMVTFHVPSKGD*
Ga0126344_11473431	3300010866	Boreal Forest Soil	MLPDTLAPAAVILPSLTVSVELAEGSQLPLFVTMVTFQTPS*
Ga0150983_143005044	3300011120	Forest Soil	MLPVTSAPGAETLPSATVSVERLDGSQVPVFVTTVTFHSPS*
Ga0120118_10855942	3300012010	Permafrost	MLPETSAPAAETLPSATVSVERVDGSQLPLFVTTVTLQS
Ga0137363_109469391	3300012202	Vadose Zone Soil	MLPETLAPDAEILPSVTDSVELALGSQLPVLVTMVTLQSPS*
Ga0137380_116443901	3300012206	Vadose Zone Soil	MLPVMSAPAAETLPSVTVNVERVDGSQEPALVTIVTFHSPS*
Ga0137381_107920911	3300012207	Vadose Zone Soil	MLPDTFAPDPEILPSVTVKVELADGSQLPALVTIVTCHSPS*
Ga0137384_106630741	3300012357	Vadose Zone Soil	MLPETLAPAPEILPSATVSVELADGSQVPLLVTMVTFQSP
Ga0137360_100648541	3300012361	Vadose Zone Soil	MLPETLAPGAETLPSETVSVERVVGSQLPALVTIVT
Ga0134044_11391201	3300012395	Grasslands Soil	MLPETFAPGAETLPSETVSVERVVGSQVPALVTMVTFQS
Ga0137358_102704031	3300012582	Vadose Zone Soil	MLPETSAPAAETLPSVTVSVERVDGSQEPALVTIVTFQ
Ga0157290_100302823	3300012909	Soil	MVPETLAPGAVILPSATVSRELAVGSQVPVLVTMVTCQLPSYGVWAKAGAA
Ga0137419_116113951	3300012925	Vadose Zone Soil	MLPETLAPGPEILPSATVKVELAVGSQVPLLVMMVTFQSPS*
Ga0164301_106509881	3300012960	Soil	VPEIAAPCAEIFPSMTFTVERDDGSQLPVLVTTVT
Ga0157370_103613674	3300013104	Corn Rhizosphere	MRPETFAPAAEILPSVTVSVEVAVGSQLPVLVTMVTF
Ga0157369_102422373	3300013105	Corn Rhizosphere	MLPETLAPAAEILPSVTVSVELAVCSQLPVFVTIVTFQTPS*
Ga0157369_103163701	3300013105	Corn Rhizosphere	MVPETLAPAAEILPSVTVSVELAVGSQLPLFVTMVTFQVPS*
Ga0163163_100388546	3300014325	Switchgrass Rhizosphere	MVPETLAPGAVILPSETVSMELAVGSQEPDLVTMVTCQLPS*
Ga0182012_103560133	3300014499	Bog	MLPETSAPGAVILPSATVSVECVEGSQDPDLVTIVT
Ga0181522_100248005	3300014657	Bog	MLPVTSAPEAETLPSEIISVERVCGSQLPLFVTTVTLQTPS*
Ga0167643_10007563	3300015089	Glacier Forefield Soil	MLPVTSAPGAETLPSATVSVERLDGSQLPVFVTTVTFHRPS*
Ga0132256_1028054171	3300015372	Arabidopsis Rhizosphere	MLPETFAPAAEILPSVTRSVELAVGSQLPLFVTIVSFQVP
Ga0182033_105938583	3300016319	Soil	MLPETLAPAAEILPSVTVRVELAVGSQLPVLVTIVTCQSP
Ga0182033_121501601	3300016319	Soil	MLPDTLAPAPEILPSVTVTVEVALGSQLPLCVMMVTFQMPSYGCWAKQGAD
Ga0182038_101888851	3300016445	Soil	MLPETLAPVDEILPSVTVTVELAVGSHVPLFVTMVTFQ
Ga0187785_100023706	3300017947	Tropical Peatland	MLPETFEPADEILPSVTVTVELVEASQVPLFVTMVTLQMPSNGD
Ga0187780_103238542	3300017973	Tropical Peatland	MLPETLAPAAEILPSLTVSVELALGSQLPLFVTMVTFQIPS
Ga0187782_115384702	3300017975	Tropical Peatland	MLPETFWPAAEILPSVTVSVELAVGSQLPLLVTIVTC
Ga0187766_107704052	3300018058	Tropical Peatland	MLPETFAPAPEILPSVTRSVELAVGSQLPLFVTMVTFQVPSKGCCA
Ga0187770_115395992	3300018090	Tropical Peatland	MLPETLAPAAEILPSLTVSVELAVGSQLPLFVTMVTFQIPS
Ga0197907_104553261	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MLPETFAPAAEILPSVTVSVELAVGSQLPVFVTMVTFQTPS
Ga0206354_115050241	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MLPETFAPGAEILPSVTVSVELAVGSQLPLLVTIVTFQVPSYGCWASADVA
Ga0210403_113840871	3300020580	Soil	MLPETLAPAPEILPSATVNVELAVGSQVPLLVMMVTFQSPS
Ga0210406_1000259510	3300021168	Soil	MLPETLAPGPEILPSATVKVELAVGSQLPLLVMMVTFQSPS
Ga0210408_100126386	3300021178	Soil	MLPETLAPAPEILPSATVKVELAVGSQLPLLVTMVTFQSPS
Ga0210387_102838124	3300021405	Soil	MLPETSAPAAEILPSATVSVERADGSQLPVFVTMVTFQR
Ga0213871_100350051	3300021441	Rhizosphere	MLPETSAPDAVILPSLTVSVELAVGSQLPLLVTIVTC
Ga0210409_114495981	3300021559	Soil	MLPETLAPAPEILPSLTVKVELAVGSQLPLLVTMVTFQSPS
Ga0213853_107688854	3300021861	Watersheds	MLPETLAPEAEILPSATVKVELAVGSQLPLFVTMVTFQSPS
Ga0213853_111204051	3300021861	Watersheds	MLPETSEPGAEILPSATVSVERVDGSHDPALVIIVTFQSPS
Ga0224712_101948381	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MLPETLAPAAEILPSVTVSVELALGSQLPVFVTMVTFQTPSKGCWARAEV
Ga0242663_11207682	3300022523	Soil	MLPVTSAPEAETLPSETISVERVCGSQLPLFVTTVTL
Ga0242658_10951051	3300022530	Soil	MLPETLAPAAEILPSVTVKVELAMGSQLPVLVTIATCQ
Ga0242660_10119421	3300022531	Soil	MLPVTSAPGAETLPSATVSVERLDGSQVPVFVTTVTFHSPS
Ga0242662_102869061	3300022533	Soil	MLPDTLAPAAEILPSVTVSVELAVGSQLPLFVTMVTLQVPS
Ga0208849_10013813	3300025664	Arctic Peat Soil	MLPVTSAPAAETLPSVTVSVERFSGSQEPALVTMVTFQSPS
Ga0207699_113102221	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MLPVTSPPPPEILPSLTVTVELAVGSQLPLFVMIVTRQVPS
Ga0207684_101700114	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MLPETLAPAPEILPSVTDKVELAVGSQLPLLVTMVTFQSPS
Ga0207707_100506462	3300025912	Corn Rhizosphere	MVPETLAPAAEILPSVTVSVELAVGSQLPLFVTMVTFQVPS
Ga0207694_103349003	3300025924	Corn Rhizosphere	MVPETLAPAAEILPSVTVNVELAVGSQLPLFVTMVTFQVPS
Ga0207665_103891001	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MLPETFAPGAEILPSVTVSVELAVGSQPPLFVTMVTFQVPSYGCWARAGVA
Ga0207640_115775251	3300025981	Corn Rhizosphere	MLPETFAPGAEILPSVTVSVELAVGSQPPLFVTMVTFQV
Ga0209863_100266532	3300026281	Prmafrost Soil	MLPEMSAPAAETLPSATVSVERVEGSQLPVFVTTVTFQSPS
Ga0209240_11629061	3300026304	Grasslands Soil	MLPLTSAPAAEILPSDTVSVELLEGSQLPLLVTTVTFHSPS
Ga0209688_10499822	3300026305	Soil	MLPETFAPGAETLPSETVTVERVVGSQVPALVTIVTFQSPSY
Ga0209804_12120642	3300026335	Soil	MLPETLAPAPEILPSVTVKVELAVGSQLPLLVIMVTFQSPS
Ga0207783_10197551	3300026942	Tropical Forest Soil	MLPETFAPAEEILPSVTVTVELAVGSHVPLFVTMVTFQIPS
Ga0208985_10230101	3300027528	Forest Soil	MLPVTSAPAAETFPSVTVSVERFSGSQDPALVTMVTFQSPS
Ga0209733_10601802	3300027591	Forest Soil	MLPETFAPEAEILPSVTVSVELLDGSQVPVLVTIVTFQSPS
Ga0209625_10606461	3300027635	Forest Soil	MLPVTSAPGAEILPSVTVSVELLDGSQLPDFVTTVTC
Ga0209112_100374122	3300027817	Forest Soil	MLPETFAPEAEILPSLTVNVELVLGSQLPLLVTTVTFQVPS
Ga0209773_102798432	3300027829	Bog Forest Soil	MLPETLAPAPEILPSATVKVELALGSQLPVLVIMVTFQSPS
Ga0302147_102372982	3300028566	Bog	MLPETSAPGAVILPSATVSVECVEGSQDPDLVTIVTSQSP
Ga0302314_107914981	3300030906	Palsa	MLPETSEPAADTLPSVTVMVELADGSQVPVLVTIFTL
Ga0308178_11708171	3300030990	Soil	MLPVTSAPAAETLPSVTLSVERVDGSQLPVLVKTV
Ga0073997_120730601	3300030997	Soil	MLPDTAAPDAETLPSVTVSVELVDGWQLPLLVTTVTCQSPS
Ga0308192_10286982	3300031082	Soil	MVPETLAPGAVILPSATVSKELAVGSQEPLLVTMVTCQL
Ga0265339_105039472	3300031249	Rhizosphere	MLPDTSAPAAETLPSLMVSVERVCGSQVPLLVTTVTLQSPSYGVWAMAGA
Ga0302320_114073041	3300031524	Bog	MLPRTSAPGPEILPSVTVSVERDEGSQLPVLVMTVTFQSPS
Ga0318516_100101874	3300031543	Soil	MLPETFAPAEEILPSVTVTVELAVGSHVPLFVTMVTFQTPS
Ga0307483_10174621	3300031590	Hardwood Forest Soil	MLPVMSAPVAEILPSVTVSVEWVDGSQEPALVTIVTFHRP
Ga0318542_100538614	3300031668	Soil	MLPETFAPAEEILPSVTVTVELAVGSHVPLFVTMVTFQ
Ga0310686_1022372492	3300031708	Soil	MLPETSAPGAVILPSATVSVECVEGSQEPALVTMVTSHS
Ga0307474_115616142	3300031718	Hardwood Forest Soil	MLPETSAPAADTRPSATVSVERADGSQLPVLVRTVT
Ga0306917_106533971	3300031719	Soil	MLPETLAPAAEILPSVTVRVELAVGSQLPVLVTIVTCQSPSYG
Ga0318565_106093721	3300031799	Soil	MVPETLAPGAVIRPSETVSMELAVGSQEPLLVTMVT
Ga0306923_100312337	3300031910	Soil	MLPETFAPAEEILPSVTVTVELAVGSHVPLFVTMVTFQTP
Ga0310912_103315454	3300031941	Soil	MLPETFAPAEEILPSVTVTVELAVGSHVPLFVTMVTFQIP
Ga0335078_103443364	3300032805	Soil	MLPETFAPADEILPSVTVTVELAVGSQVPLFVIMVTFQVPSKGD
Ga0335069_111484352	3300032893	Soil	MLPETLAPDAEILPSVTVSVELAVASQLPLLVTIVTCHR
Ga0335083_101905732	3300032954	Soil	MLPETFAPVDEILPSVTVTVELVEASQLPLFVIIVTFQVPSYGD
Ga0318519_110399221	3300033290	Soil	MLPETLAPVDEILPSVTVTVELAVGSHVPLFVTMVTFQVPSYG