Metagenome / Metatranscriptome Family F094275

Basic Information
Family ID	F094275
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	78 residues
Representative Sequence	DPDFTLTGVSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAERALQTSRAVPVGTF
Number of Associated Samples	86
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	91.51 %
% of genes from short scaffolds (< 2000 bps)	84.91 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Most Common Taxonomy
Group	Bacteria (63.208 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.981 % of family members)
Environment Ontology (ENVO)	Unclassified (26.415 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.95% β-sheet: 13.59% Coil/Unstructured: 51.46%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13561	adh_short_C2	30.19
PF02574	S-methyl_trans	27.36
PF00528	BPD_transp_1	10.38
PF00106	adh_short	5.66
PF00202	Aminotran_3	3.77
PF12911	OppC_N	1.89
PF00005	ABC_tran	1.89
PF08352	oligo_HPY	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0646	Methionine synthase I (cobalamin-dependent), methyltransferase domain	Amino acid transport and metabolism [E]	27.36
COG2040	Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)	Amino acid transport and metabolism [E]	27.36

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.21 %
Unclassified	root	N/A	36.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.21 %
Unclassified	root	N/A	36.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.21 %
Unclassified	root	N/A	36.79 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	39.62 %
Unclassified	root	N/A	36.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.55 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4.72 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.55 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	3.77 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.94 %
Euzebyales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.55 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	3.77 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.94 %
Euzebyaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → Euzebyaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.55 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	3.77 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.94 %
unclassified Euzebyaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → Euzebyaceae → unclassified Euzebyaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.55 %
Nocardia tenerifensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia tenerifensis	3.77 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	0.94 %
Euzebyaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → Euzebyaceae → unclassified Euzebyaceae → Euzebyaceae bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.55 %
Nocardia tenerifensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia tenerifensis	3.77 %
Frankia sp. Cc1.17	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Cc1.17	0.94 %
Euzebyaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → Euzebyaceae → unclassified Euzebyaceae → Euzebyaceae bacterium	0.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003659\|JGI25404J52841_10039949	Not Available	993	Open in IMG/M
3300005175\|Ga0066673_10688185	Not Available	590	Open in IMG/M
3300005329\|Ga0070683_101882464	All Organisms → cellular organisms → Bacteria → Terrabacteria group	575	Open in IMG/M
3300005338\|Ga0068868_102127965	All Organisms → cellular organisms → Bacteria → Terrabacteria group	534	Open in IMG/M
3300005364\|Ga0070673_101355558	All Organisms → cellular organisms → Bacteria → Terrabacteria group	669	Open in IMG/M
3300005434\|Ga0070709_10393965	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300005434\|Ga0070709_10773791	All Organisms → cellular organisms → Bacteria → Proteobacteria	751	Open in IMG/M
3300005434\|Ga0070709_11027347	All Organisms → cellular organisms → Bacteria → Terrabacteria group	657	Open in IMG/M
3300005434\|Ga0070709_11217320	All Organisms → cellular organisms → Bacteria → Terrabacteria group	605	Open in IMG/M
3300005435\|Ga0070714_100517529	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1139	Open in IMG/M
3300005435\|Ga0070714_101208209	Not Available	737	Open in IMG/M
3300005436\|Ga0070713_101003254	All Organisms → cellular organisms → Bacteria → Terrabacteria group	805	Open in IMG/M
3300005437\|Ga0070710_11425400	All Organisms → cellular organisms → Bacteria → Proteobacteria	518	Open in IMG/M
3300005445\|Ga0070708_101673407	Not Available	592	Open in IMG/M
3300005459\|Ga0068867_100847335	Not Available	819	Open in IMG/M
3300005467\|Ga0070706_100681658	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300005468\|Ga0070707_100039533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia tenerifensis	4509	Open in IMG/M
3300005526\|Ga0073909_10726274	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300005576\|Ga0066708_11004389	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300005614\|Ga0068856_102121449	All Organisms → cellular organisms → Bacteria → Proteobacteria	571	Open in IMG/M
3300005764\|Ga0066903_108773436	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M
3300006034\|Ga0066656_10814821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Cc1.17	598	Open in IMG/M
3300006173\|Ga0070716_100906811	All Organisms → cellular organisms → Bacteria → Terrabacteria group	690	Open in IMG/M
3300006854\|Ga0075425_100082454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia tenerifensis	3637	Open in IMG/M
3300006854\|Ga0075425_102847957	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300006871\|Ga0075434_100066110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia tenerifensis	3601	Open in IMG/M
3300006881\|Ga0068865_101358767	All Organisms → cellular organisms → Bacteria → Terrabacteria group	633	Open in IMG/M
3300006903\|Ga0075426_10155542	All Organisms → cellular organisms → Bacteria	1650	Open in IMG/M
3300009089\|Ga0099828_12040195	All Organisms → cellular organisms → Bacteria → Terrabacteria group	501	Open in IMG/M
3300009162\|Ga0075423_12852802	All Organisms → cellular organisms → Bacteria → Terrabacteria group	529	Open in IMG/M
3300009551\|Ga0105238_10788823	Not Available	965	Open in IMG/M
3300010043\|Ga0126380_10795039	All Organisms → cellular organisms → Bacteria → Terrabacteria group	773	Open in IMG/M
3300010046\|Ga0126384_10983683	Not Available	767	Open in IMG/M
3300010358\|Ga0126370_11432622	All Organisms → cellular organisms → Bacteria → Terrabacteria group	654	Open in IMG/M
3300010359\|Ga0126376_10344300	Not Available	1318	Open in IMG/M
3300010359\|Ga0126376_11494892	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300010361\|Ga0126378_10454327	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1395	Open in IMG/M
3300010371\|Ga0134125_10281248	All Organisms → cellular organisms → Bacteria	1848	Open in IMG/M
3300010373\|Ga0134128_12844251	Not Available	533	Open in IMG/M
3300010376\|Ga0126381_101852584	All Organisms → cellular organisms → Bacteria → Terrabacteria group	870	Open in IMG/M
3300010376\|Ga0126381_102334824	Not Available	768	Open in IMG/M
3300010399\|Ga0134127_11984949	All Organisms → cellular organisms → Bacteria → Terrabacteria group	659	Open in IMG/M
3300010400\|Ga0134122_11836443	Not Available	639	Open in IMG/M
3300012200\|Ga0137382_10246198	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1238	Open in IMG/M
3300012211\|Ga0137377_10817705	All Organisms → cellular organisms → Bacteria → Terrabacteria group	864	Open in IMG/M
3300012359\|Ga0137385_10223560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → Euzebyaceae → unclassified Euzebyaceae → Euzebyaceae bacterium	1637	Open in IMG/M
3300012359\|Ga0137385_11422996	Not Available	557	Open in IMG/M
3300012359\|Ga0137385_11562006	Not Available	524	Open in IMG/M
3300012361\|Ga0137360_11447966	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300012948\|Ga0126375_11749754	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300012948\|Ga0126375_12120808	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300013104\|Ga0157370_12050160	Not Available	513	Open in IMG/M
3300013307\|Ga0157372_11117669	All Organisms → cellular organisms → Bacteria → Terrabacteria group	911	Open in IMG/M
3300013307\|Ga0157372_12647775	Not Available	575	Open in IMG/M
3300014325\|Ga0163163_10876121	Not Available	961	Open in IMG/M
3300014325\|Ga0163163_12791511	Not Available	545	Open in IMG/M
3300015373\|Ga0132257_103796306	Not Available	550	Open in IMG/M
3300016341\|Ga0182035_10608748	All Organisms → cellular organisms → Bacteria → Terrabacteria group	945	Open in IMG/M
3300016387\|Ga0182040_10857823	All Organisms → cellular organisms → Bacteria → Terrabacteria group	751	Open in IMG/M
3300017974\|Ga0187777_11146698	All Organisms → cellular organisms → Bacteria → Terrabacteria group	567	Open in IMG/M
3300020579\|Ga0210407_11252972	All Organisms → cellular organisms → Bacteria → Terrabacteria group	556	Open in IMG/M
3300022467\|Ga0224712_10445574	Not Available	621	Open in IMG/M
3300025898\|Ga0207692_10119669	Not Available	1473	Open in IMG/M
3300025898\|Ga0207692_11017979	Not Available	547	Open in IMG/M
3300025901\|Ga0207688_10054513	All Organisms → cellular organisms → Bacteria	2243	Open in IMG/M
3300025910\|Ga0207684_10467395	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300025911\|Ga0207654_10562887	Not Available	811	Open in IMG/M
3300025918\|Ga0207662_10174814	Not Available	1379	Open in IMG/M
3300025922\|Ga0207646_10036133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia tenerifensis	4460	Open in IMG/M
3300025929\|Ga0207664_10219432	All Organisms → cellular organisms → Bacteria	1648	Open in IMG/M
3300025929\|Ga0207664_10222563	All Organisms → cellular organisms → Bacteria	1637	Open in IMG/M
3300025939\|Ga0207665_10578055	All Organisms → cellular organisms → Bacteria → Terrabacteria group	875	Open in IMG/M
3300025939\|Ga0207665_11634848	All Organisms → cellular organisms → Bacteria → Terrabacteria group	510	Open in IMG/M
3300025941\|Ga0207711_10426913	Not Available	1233	Open in IMG/M
3300026295\|Ga0209234_1262201	All Organisms → cellular organisms → Bacteria → Proteobacteria	559	Open in IMG/M
3300027725\|Ga0209178_1115244	Not Available	907	Open in IMG/M
3300027821\|Ga0209811_10236007	Not Available	696	Open in IMG/M
3300028381\|Ga0268264_10743338	Not Available	977	Open in IMG/M
3300028381\|Ga0268264_12320810	Not Available	543	Open in IMG/M
3300028828\|Ga0307312_11081926	All Organisms → cellular organisms → Bacteria → Terrabacteria group	530	Open in IMG/M
3300031668\|Ga0318542_10124367	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300031765\|Ga0318554_10039849	All Organisms → cellular organisms → Bacteria	2548	Open in IMG/M
3300031765\|Ga0318554_10760481	All Organisms → cellular organisms → Bacteria → Terrabacteria group	542	Open in IMG/M
3300031795\|Ga0318557_10029011	All Organisms → cellular organisms → Bacteria	2222	Open in IMG/M
3300031821\|Ga0318567_10329448	All Organisms → cellular organisms → Bacteria → Terrabacteria group	862	Open in IMG/M
3300031832\|Ga0318499_10407437	All Organisms → cellular organisms → Bacteria → Terrabacteria group	520	Open in IMG/M
3300031879\|Ga0306919_10291159	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1237	Open in IMG/M
3300031894\|Ga0318522_10190528	All Organisms → cellular organisms → Bacteria → Terrabacteria group	776	Open in IMG/M
3300031939\|Ga0308174_11068009	Not Available	686	Open in IMG/M
3300031946\|Ga0310910_11234104	All Organisms → cellular organisms → Bacteria → Terrabacteria group	579	Open in IMG/M
3300031947\|Ga0310909_11411449	All Organisms → cellular organisms → Bacteria → Terrabacteria group	557	Open in IMG/M
3300032055\|Ga0318575_10551127	All Organisms → cellular organisms → Bacteria → Terrabacteria group	585	Open in IMG/M
3300032064\|Ga0318510_10100100	Not Available	1101	Open in IMG/M
3300032066\|Ga0318514_10508639	All Organisms → cellular organisms → Bacteria → Proteobacteria	641	Open in IMG/M
3300032089\|Ga0318525_10124157	All Organisms → cellular organisms → Bacteria	1321	Open in IMG/M
3300032205\|Ga0307472_102123102	Not Available	565	Open in IMG/M
3300032261\|Ga0306920_100304255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2374	Open in IMG/M
3300032828\|Ga0335080_10277385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1826	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.30%
Host-Associated	Host-Associated	21.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.30%
Plants	Host-Associated → Plants	21.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.32%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.49%
Roots	Host-Associated → Plants → Roots	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.77%
Loam	Environmental → Terrestrial → Soil → Loam	22.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.38%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.55%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.47%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.58%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	20.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	15.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.32%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.66%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	3.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25404J52841_100399492	3300003659	Tabebuia Heterophylla Rhizosphere	GQPVARRAASPPLERSVRRFLDAVGRGDPAAVACTPPDAAATLAVAVAAEQALQTSRAVQVGTS*
Ga0066673_106881852	3300005175	Soil	GMDIIAPEATLRLALDPDFTLSGMNRGQPVTRRAASHPFERSVRRFLDAVRDHDPAAVACTPPDAAATLAVAIAAEQALRTSRAVQVGTF*
Ga0070683_1018824642	3300005329	Corn Rhizosphere	LALDPDFTLTGLSAGQPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAP*
Ga0068868_1021279651	3300005338	Miscanthus Rhizosphere	FTLTGVSAGQPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVGTP*
Ga0070673_1013555582	3300005364	Switchgrass Rhizosphere	LDIVASDATLRLALDPDFTLTGVSAGQPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAP*
Ga0070709_103939652	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LDPDFTLTGVSHDRPVDRHAASQPLDRSLGRFLHAAAERDPSAVFCAPPDAAATLAVAVAAERALETGQSVPVVNL*
Ga0070709_107737911	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	EATLRLALDPDFTLSGVSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAEQALQTSRAVPVGIF*
Ga0070709_110273471	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LDPDFTLTGVSAGQPVDRRAASQPLERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAP*
Ga0070709_112173201	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	DPDFTLTGLSAGQPVDKRAASQPMERSMSRFLRAVREHDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAP*
Ga0070714_1005175292	3300005435	Agricultural Soil	LDPDFTLTGLSAGQPVDKRAASQPMERSMSRFLRAVREHDLAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAP*
Ga0070714_1012082091	3300005435	Agricultural Soil	DLDPDFTLSGVNRGQPVTRRAATHPFERSVRRFLDAVRDRDPGAVACTPADAAITLAVAAAAEQALQTSQAIQVETL*
Ga0070713_1010032542	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LDPDFTLTGVSAGQPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAP*
Ga0070710_114254002	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	TLSGVSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAERALQTSRAVPVGTF*
Ga0070708_1016734072	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LDPDFTLSGVNRGQPVTRRAATHPFERSVRRFLDAVRDRDPAAVACTPPDATATLAVAVAAERALQTSQAVQVGTF*
Ga0068867_1008473351	3300005459	Miscanthus Rhizosphere	QPVTRRAASHPFERSVRRFLDAVGSHDPAAVACTPPDAAATLAVAVAAERALQTSRAVQVGTS*
Ga0070706_1006816581	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	ALDVVASDSTLRLHLDPDFTLTGMSHDRPVTLRSASQPLEQSWRRFLQAVSERDPSGVACAPPDAAATLAVAVAAERALETARAVPVETV*
Ga0070707_1000395331	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	SHDRPVTLRSASQPLEQSWRRFLQAVSERDPSGVACAPPDAAATLAVAVAAERALETARAVPVETV*
Ga0073909_107262742	3300005526	Surface Soil	LSGVSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAERALQTSRAVPVGTF*
Ga0066708_110043892	3300005576	Soil	FTLSGVSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAEQALQTSRAVPVGTF*
Ga0068856_1021214492	3300005614	Corn Rhizosphere	VSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAEQALQTSRAVPVGIF*
Ga0066903_1087734362	3300005764	Tropical Forest Soil	LDPDFTLTGVSAGQPVDRRAASPPLERSMSRFLHAVGERDPAAVVCPPPDAAATLAVAIAAERALETSRAVPVGTS*
Ga0066656_108148212	3300006034	Soil	LDPDFTLTGVSNGQQVSRRSASPPLERSWRRFLRAVSEHDPAAVVCTPPDAAATLAVAIAAERALETSRAVAVGTP*
Ga0070716_1009068112	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	DPDFTLTGLSAGQPVDKRAASQPMERSMSRFLRAVREHDLAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAP*
Ga0075425_1000824541	3300006854	Populus Rhizosphere	DPDFTLTGVSNGQQVSRRSASPPLERSWRRFLRAVSEHDPAAVVCTPPDAAATLAVAIAAERALGTSRSVPVGPP*
Ga0075425_1028479571	3300006854	Populus Rhizosphere	DFTLSGVSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAEQALRTSRAVPVGTF*
Ga0075434_1000661101	3300006871	Populus Rhizosphere	ASDATLRMDLDPDFTLTGVSNGQQVSRRSASPPLERSWRRFLRAVSEHDPAAVVCTPPDAAATLAVAIAAERALGTSRAVPVGPP*
Ga0068865_1013587671	3300006881	Miscanthus Rhizosphere	DFTLTGLSAGQPVDKRAASQPMERSMSRFLRAVREHDLAAVVCTPPDAAATLAVAIAAERALETSRAVPVGTP*
Ga0075426_101555421	3300006903	Populus Rhizosphere	ASDATLRMDLDPDFTLTGVSNGQQVSRRSASPPLERSWRRFLRAVSEHDPAAVVCTPPDAAATLAVAIAAERALGTSRSVPVGPP*
Ga0099828_120401951	3300009089	Vadose Zone Soil	PVTRRAASHPFERSVRRFLDAVKERDPTAVACTPPDAAATLAVATAAERALQTSRAVQVGIF*
Ga0075423_128528021	3300009162	Populus Rhizosphere	TLRMDLDPDFTLTGVSNGQQVSRRSASPPLERSWRRFLRAVSEHDPAAVVCTPPDAAATLAVAIAAERALGTSRAVPVGPP*
Ga0105238_107888232	3300009551	Corn Rhizosphere	TLRLALDPDFTLSGVSRDQPVTRRAASHPFERSVRRFLDAVGSHDPAAVACTPPDAAATLAVAVAAERALQTSRAVQVGTF*
Ga0126380_107950391	3300010043	Tropical Forest Soil	LDPDFTLTGVSGGEQVSRRSASPPLERSWRRFLAAVSEQDPSAVVCTPPDAAATLAVAIAAERALETSRAVPVETP*
Ga0126384_109836832	3300010046	Tropical Forest Soil	TLSGVSRGQPVARRAASHPFERSVRRFLDAVGSRDPAAVACTPLDAAGTLAVAVAAEQALQTSRAIQVGTF*
Ga0126370_114326222	3300010358	Tropical Forest Soil	VSAGQPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDTP*
Ga0126376_103443001	3300010359	Tropical Forest Soil	HLDPDFTLTGMSHDRPVTLRSASQPLEQSWRRFLRAVSERDPSAVACAPPDATATLAVAVAAERALETARAVPVETV*
Ga0126376_114948922	3300010359	Tropical Forest Soil	VKSGSRFSRSVASDATLRLALDPDFTLTGVSAGQPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAP*
Ga0126378_103355491	3300010361	Tropical Forest Soil	YAVDIVASESTLRLNLDPEFTLTGVARSGQVALRAASSPAERSMRRFLDAARDRDPGGVVCTPPDAAATLAVAIAAERALETAQAVTVETI*
Ga0126378_104543272	3300010361	Tropical Forest Soil	LALDPDFTLTGVSAGQPVDKRAASQPMERSMSRFLRAVREHDPAVVVCTPSDAATTLAVAIAAERALETSRAVPVDTP*
Ga0134125_102812481	3300010371	Terrestrial Soil	IIASEATLRLALDPDFTLSGVSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAEQALQTSRAVQVGTS*
Ga0134128_128442512	3300010373	Terrestrial Soil	DFTLTGVSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAERALQTSRAVPVGTF*
Ga0126381_1018525841	3300010376	Tropical Forest Soil	SDATLRLALDPDFTLTGVSAGQPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDVP*
Ga0126381_1023348242	3300010376	Tropical Forest Soil	LSLDPDFILTGVSGGQQVSRRAESHPFERSMRRFLRAVAERDPASVACTPRDAAATLAVAVAAERALETSRAVRVGSR*
Ga0126383_127138452	3300010398	Tropical Forest Soil	DVVASESTLRLNLDPEFTLTGMARGGQVALRAASSPAERSMRRFLDAARDRDPGGVVCTPVDAAATLAVAIAAERALETAQAVTVETI*
Ga0134127_119849492	3300010399	Terrestrial Soil	ALDPDFTLTGVSAGQPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAP*
Ga0134122_118364432	3300010400	Terrestrial Soil	PVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAEQALQTSRAVQVGTS*
Ga0137382_102461982	3300012200	Vadose Zone Soil	SDATLRLALDPDFTLTGVSAGQPVDKRAASQPMERSMSRLLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVAVGTP*
Ga0137377_108177051	3300012211	Vadose Zone Soil	IVASDATLRLALDPDFTLTGMSAGQLVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVRVDAP*
Ga0137385_102235602	3300012359	Vadose Zone Soil	IASDATLRLALDPDFTLSGVSRGQPVTRRAASHPFERSVRRFLDAVSERNPAAVACTPPDAAATLAVATAAEQALRTSRAIQVGTV*
Ga0137385_114229961	3300012359	Vadose Zone Soil	LDPDFTLSGVSRGQPVTRRAASHPFERSVRRFLDAVRERDPTAVACTPPDAAATLAVAAAAERALQTSRAVQVGIF*
Ga0137385_115620062	3300012359	Vadose Zone Soil	GQPVTRRAATHPFERSVRRFLDAVRDRYPAAVACTPPDATATLAVAIAAERALQTSRAVQVGAF*
Ga0137360_114479661	3300012361	Vadose Zone Soil	ITGMSHDRPVNRRAAARPLERSLGRFLHAVTERDPSAVPCAPPDAAATLAVAVAAERALETGKAIPVQS*
Ga0126375_117497541	3300012948	Tropical Forest Soil	DATLRLALDPDFTLTGVSAGQPVDKRAASQPMERSMSRFLRAVREHDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDPP*
Ga0126375_121208081	3300012948	Tropical Forest Soil	SYGLDIIASDATLRLDLDPDFTLTGVSAGEQVSRRSAAPPLERSMRRFLAAVSEQDPSAVVCTPPDAAATLAVAIAAERALETSRAVPVETP*
Ga0157370_120501602	3300013104	Corn Rhizosphere	FTLSGVSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAERALQTSRAVPVGTFWTGPAT*
Ga0157372_111176691	3300013307	Corn Rhizosphere	GLDIIASDATLRMDLDPDFTLTGVSNGQQVSRRSASPPLERSWRRFLRAVSEHDPAAVICPPPDAAATLAVAIAAERALETSRAVPVGTP*
Ga0157372_126477752	3300013307	Corn Rhizosphere	SEATLRLALDPDFTLSGVSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAERALQTSRAVPVGTF*
Ga0163163_108761212	3300014325	Switchgrass Rhizosphere	VSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAERALQTSRAVPVGTF*
Ga0163163_127915112	3300014325	Switchgrass Rhizosphere	FTLSGVSRGQPVTRRAASRPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAEQALQTSRAVPVGIF*
Ga0132257_1037963062	3300015373	Arabidopsis Rhizosphere	TLRLALDPDFTLSGVSQGQPVTRRAASHPFERSVRRFLDAVGRHDPTAVACPPPDAAATLAVAVAAERALQTSRAVPVGTFWTGPAT*
Ga0182035_100292921	3300016341	Soil	TVLVAWTRPGQPGTYGVDVVASESTLRLNLDPEFSLTGMAGSGQVALRAASSPAERSMRRFLDAARDRDPGGVVCTPPDAAATLAVAIAAERALDTAQAVTVEPI
Ga0182035_106087482	3300016341	Soil	ASDATLRLALDPDFTLTGVSAGQPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAS
Ga0182040_108578232	3300016387	Soil	LDIVASDATLRLALDPDFTLTGVSAGQPVDKRAASQPMERSMSRFLRAVRERNPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAS
Ga0182038_100966433	3300016445	Soil	VVASESTLRLNLDPEFTLTGMARGGQVALRAASSPAERSMRRFLDAARDRDPGGVVCTPPDAAATLAVAIAAERALETAQAVTVETI
Ga0187777_111466982	3300017974	Tropical Peatland	ALDPDFTLTGVSAGQPVDKRAASPPMERSMSRFLHAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAP
Ga0210407_112529722	3300020579	Soil	GLSAGQPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAP
Ga0224712_104455741	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	RDQPVTRRAASHPFERSVRRFLDAVGSHDPAAVACTPPDAAATLAVAVAAERALQTSRAVQVGTF
Ga0207692_101196693	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	ALDPDFTLSGVSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAEQALQTSRAVPVGIF
Ga0207692_110179791	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	ALDPDFTLTGVSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAERALQTSRAVTVGTF
Ga0207688_100545133	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	TLRLALDPDFTLSGVSQGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAERALQTSRAVPVGTF
Ga0207684_104673951	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LDPDFTLTGMSHDRPVTLRSASQPLEQSWRRFLQAVSERDPSGVACAPPDAAATLAVAVAAERALETARAVPVETV
Ga0207654_105628872	3300025911	Corn Rhizosphere	DPDFTLTGVSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAERALQTSRAVPVGTF
Ga0207662_101748142	3300025918	Switchgrass Rhizosphere	EATLRLALDPDFTLSGVSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAERALQTSRAVPVGTFWTGPAT
Ga0207646_100361334	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	ASDSTLRLHLDPDFTLTGMSHDRPVTLRSASQPLEQSWRRFLQAVSERDPSGVACAPPDAAATLAVAVAAERALETARAVPVETV
Ga0207664_102194323	3300025929	Agricultural Soil	DPDFTLSGVSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAEQALQTSRAVPVGIF
Ga0207664_102225633	3300025929	Agricultural Soil	PDFTLTGVSRGRPVTRRAASHPFERSVRLFLDAVGRHDPAAVACTPPDAAATLAVAVAAERALQTSRAVTVGTF
Ga0207665_105780551	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LTGVSAGQPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAP
Ga0207665_116348482	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LTGVSAGQPVDKRAASQPMERSMSRFLRAVREHDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAP
Ga0207711_104269132	3300025941	Switchgrass Rhizosphere	VTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAERALQTSRAVPVGT
Ga0209234_12622011	3300026295	Grasslands Soil	FTLTGVSNGQQVSRRSASPPLERSWRRFLRAVSEHDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVGTP
Ga0209178_11152442	3300027725	Agricultural Soil	VSRGQPVTRRAASHPFERSVRLFLDAVGRHDPAAVACTPPDAAATLAVAVAAERALQTSRAVTVGTF
Ga0209811_102360072	3300027821	Surface Soil	DFTLSGVSRGQPVTRRAASHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAERALQTSRAVPVGTF
Ga0268264_107433381	3300028381	Switchgrass Rhizosphere	FTLSGVSRDQPVTRRAASHPFERSVRRFLDAVGSHDPAAVACTPPDAAATLAVAVAAERALQTSRAVQVGTF
Ga0268264_123208101	3300028381	Switchgrass Rhizosphere	TLTGVSWGQPVTRRAASHPFERSVRLFLDAVGRHDPAAVACTPPDAAATLAVAVAAERALRTSRAVTVGTF
Ga0307312_110819261	3300028828	Soil	YGLDIIASDATLRLDLDPEFTLTGVSNGQQVSRRSASPPLERSWRRFLHAVSEHDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVGTP
Ga0318528_104983521	3300031561	Soil	LTGMAPSGQVALRAASSPAERSMRRFLEAARDRDPGGVVCTPPDAAATLAVAIAAERALDTAQAVTVEPI
Ga0318542_101243671	3300031668	Soil	DPEFTLTGMARGAPVDRRAAANPSERSMRRFLDAARDRDPAEVVCTPPDAAATLAVAIAAERALETAQAVTIGTL
Ga0318572_102249971	3300031681	Soil	PGTYGVDVIASESTLRLSLDPEFTLTGMARGAPVDRRAAANPSERSMRRFLDAARDRDPAEVVCTPPDAAATLAVAIAAERALETAQAVTIGTL
Ga0318554_100398494	3300031765	Soil	TLRLSLDPEFTLTGMARGAPVDRRAAANPSERSMRRFLDAARDRDPAEVVCTPPDAAATLAVAIAAERALETAQAVTIGTL
Ga0318554_107604812	3300031765	Soil	DFTLTGVSAGQPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALEVSRAVPVYAS
Ga0318503_102121981	3300031794	Soil	SESTLRLNLDPEFTLTGMARSGQVALRAASSPAERSMRRFLDAARDRDPGGVVCTPPDAAATLAVAIAAERALETAQAVTVEPI
Ga0318557_100290111	3300031795	Soil	LRLALDPDFTLTGMSGGQRVDRRAASHPFDRSMRRFLHAVAGRDPAAVPCTPRDAAATLAVAIAAEQALETSRAVPVESF
Ga0318567_103294482	3300031821	Soil	HYGLDIVASDATLRLALDPDFTLTGVSAGQPVDNRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAS
Ga0318499_104074372	3300031832	Soil	GLSAGKPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALEVSRAVPVYAS
Ga0306919_102911591	3300031879	Soil	VASDATLRLALDPDFTLTGVSAGQPVNLRAASPPLERSMSRFLRAVSQHDPAAVVCTPADAAATLAVAIAAERALETSRAVPVDVP
Ga0318522_101905282	3300031894	Soil	SDATLRLALDPDFTLTGVSAGQPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALEVSRAVPVYAS
Ga0308174_110680091	3300031939	Soil	SEATLRLALDPDFTLSGVSRGRPVDLCAAAHPFERSVRRFLDAVGRHDPAAVACTPPDAAATLAVAVAAEQALQTSRAVPVGTF
Ga0310910_112341042	3300031946	Soil	SDATLRLALDPDFTLTGVSAGQPVERRAASPPLERSMSRFLRAVSQHDPAAVVCTPADAAATLAVAIAAERALETSRAVPVDVP
Ga0310909_114114492	3300031947	Soil	LDIVASDATLRLALDPDFTLTGVSAGQPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAS
Ga0318575_105511271	3300032055	Soil	ALDPDFTLTGVSAGQPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALEVSRAVPVYAS
Ga0318510_101001001	3300032064	Soil	GRSGGQWVDRRAASPPFDRSMRRFLHAVAGRDPAAVPCTPRDAAATLAVAIAAEQALETSRAVPVESF
Ga0318514_100383501	3300032066	Soil	RLNLDPEFSLTGMAGSGQVALRAASSPAERSMRRFLDAARDRDPGGVVCTPPDAAATLAVAIAAERALDTAQAVTVEPI
Ga0318514_105086391	3300032066	Soil	AGAHAGEGEVGVEGQPVERRAASPPLERSMSRFLRAVSQHDPAAVVCTPADAAGTLAVAIAAERALETSRAVLVNAP
Ga0318525_101241571	3300032089	Soil	TGISHDRPVTRRATSQPLERSLGRFIDAVTARDPSAVPCTPPDAAATLAVAVAAERALETAQAVRVDTV
Ga0307472_1021231021	3300032205	Hardwood Forest Soil	TLSGVSRGQPVTRRAASHPFERSVRRFLDAVGSHDPAAVACTPPDAAATLAVAVAAEQALQTSRAVQVGTS
Ga0306920_1003042551	3300032261	Soil	TLTGVSAGQPVNLRAASPPLERSMSRFLRAVSQHDPAAVVCTPADAAATLAVAIAAERALETSRAVPVDVP
Ga0335080_102773853	3300032828	Soil	RYGLDIVASDATLRLALDPDFTLTGVSAGQPVDKRAASQPMERSMSRFLRAVRERDPAAVVCTPPDAAATLAVAIAAERALETSRAVPVDAP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094275

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign