NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F094252

Metagenome / Metatranscriptome Family F094252

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F094252
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 42 residues
Representative Sequence MLRRKTIIVLVITLMVTAMVTAFSYLYISQILRLRIANANE
Number of Associated Samples 97
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 23.08 %
% of genes near scaffold ends (potentially truncated) 12.26 %
% of genes from short scaffolds (< 2000 bps) 10.38 %
Associated GOLD sequencing projects 94
AlphaFold2 3D model prediction Yes
3D model pTM-score0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (87.736 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(17.924 % of family members)
Environment Ontology (ENVO) Unclassified
(24.528 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(54.717 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.
1JGI12269J14319_100428423
2Ga0068966_13103021
3Ga0062388_1013311971
4Ga0070713_1015239161
5Ga0070734_104559372
6Ga0070762_112275751
7Ga0070763_101407852
8Ga0075019_110197221
9Ga0075014_1000039741
10Ga0116222_13005192
11Ga0116221_13833482
12Ga0116225_13581782
13Ga0116101_11669732
14Ga0074044_108670192
15Ga0126376_132857581
16Ga0126381_1000295017
17Ga0126381_1050871331
18Ga0136449_1003223373
19Ga0136449_1014713321
20Ga0126361_109604541
21Ga0150983_102219172
22Ga0137384_103313312
23Ga0126375_119094482
24Ga0164298_102419401
25Ga0164307_113231412
26Ga0181526_109244342
27Ga0181522_100139643
28Ga0137403_114606022
29Ga0132256_1005589632
30Ga0187818_102154482
31Ga0187820_11379281
32Ga0187824_103709911
33Ga0187801_104784852
34Ga0187808_105675472
35Ga0187781_112386772
36Ga0187782_113153291
37Ga0210403_110628381
38Ga0210396_109018511
39Ga0210388_101017453
40Ga0210388_112565351
41Ga0210385_101000831
42Ga0210391_103971111
43Ga0210390_103704842
44Ga0210402_105205211
45Ga0126371_109134522
46Ga0126371_127727922
47Ga0242649_10383712
48Ga0242659_10748241
49Ga0212123_104014032
50Ga0242678_10640281
51Ga0242661_10063073
52Ga0242661_11112502
53Ga0224568_10162871
54Ga0207692_103757262
55Ga0207700_103127752
56Ga0207700_112573242
57Ga0207664_105215131
58Ga0207665_100694791
59Ga0207665_109311522
60Ga0209470_13811882
61Ga0209158_11184112
62Ga0209219_10454972
63Ga0209007_10036234
64Ga0209736_10131211
65Ga0209736_12019102
66Ga0209009_10882211
67Ga0209118_11527921
68Ga0209448_101376942
69Ga0209580_104182392
70Ga0209701_101533781
71Ga0209167_107421942
72Ga0209169_101031471
73Ga0209067_100340731
74Ga0302219_101963191
75Ga0311352_112258292
76Ga0311371_110926621
77Ga0311346_102314551
78Ga0302179_100483291
79Ga0311372_117588292
80Ga0311357_113067111
81Ga0310038_104061821
82Ga0075405_112320482
83Ga0075388_113490502
84Ga0302314_112972902
85Ga0075382_108012091
86Ga0075401_117516642
87Ga0265760_103229801
88Ga0302324_1002790763
89Ga0265325_103459341
90Ga0170819_159210242
91Ga0310686_1138990551
92Ga0307474_106652582
93Ga0307468_1022697902
94Ga0318568_107836231
95Ga0307473_105460282
96Ga0306926_107723292
97Ga0311301_120138681
98Ga0315742_131657091
99Ga0335079_105868442
100Ga0335079_114736281
101Ga0335078_117829872
102Ga0335080_117587601
103Ga0335084_111319041
104Ga0335073_103984592
105Ga0310914_108658672
106Ga0310811_110612071
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 56.52%    β-sheet: 0.00%    Coil/Unstructured: 43.48%
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Variant

510152025303540MLRRKTIIVLVITLMVTAMVTAFSYLYISQILRLRIANANEExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
12.3%87.7%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Bog Forest Soil
Bog
Peatland
Freshwater Sediment
Iron-Sulfur Acid Spring
Watersheds
Soil
Vadose Zone Soil
Tropical Forest Soil
Surface Soil
Peatlands Soil
Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Bog Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Palsa
Bog
Plant Litter
Rhizosphere
Arabidopsis Rhizosphere
Boreal Forest Soil
4.7%2.8%4.7%2.8%5.7%2.8%8.5%17.9%2.8%5.7%6.6%2.8%5.7%7.5%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12269J14319_1004284233300001356Peatlands SoilMLRRKTIIVLVITLMVTAMVTAFSYLYISQILRLRIANANETATSLTHQL
Ga0068966_131030213300004476Peatlands SoilMLRRKAIIVLVITLMVTAMVSAFSYLYISQILRLRIANAYETATNLT
Ga0062388_10133119713300004635Bog Forest SoilMFRRKTIIVLAITLMVTAMVSAFSYLYISQILRLRIENANTTATN
Ga0070713_10152391613300005436Corn, Switchgrass And Miscanthus RhizosphereMLRRKTIIVLAITLMVTVMVTAFSYLYLSQILRLRIVNASDTANS
Ga0070734_1045593723300005533Surface SoilMLRRKTLIVLVITLMVTIMVSAFSYLYISQILRLRIANAMETASSL
Ga0070762_1122757513300005602SoilMLRRKTIIVLVITFMVTAMVASFSYLYISQILRLRIV
Ga0070763_1014078523300005610SoilMLRRKTIIVLVITLMVTVMVSAFSFLYISQILRLRIANAYETATSLTHQLAYA
Ga0075019_1101972213300006086WatershedsMRRKTKIVLAITFMVTAMVSAFSYLYVSQVLRLRVNNASDTAKL
Ga0075014_10000397413300006174WatershedsMLRRKTIIVLAITLMVTVMVTAFSYLYVSQMLRLRIANAHETAASL
Ga0116222_130051923300009521Peatlands SoilMLRRKTIIVLVITLMVIVMVSAFSYLYISQILRLRVGNTYET
Ga0116221_138334823300009523Peatlands SoilMRRKTIIVLGITFMVTVMVTAFSYLYVSETLSQQITGAC
Ga0116225_135817823300009524Peatlands SoilMRRKAIIVLTITVMVTVMVAAFSYLYISSLLRQRITN
Ga0116101_116697323300009759PeatlandMLRRKTIIVLVITLMVTVMVSAFSYLYISQILRLRIANAYETAT
Ga0074044_1086701923300010343Bog Forest SoilMLRRKTIIVLVITLMVTAMVSTFSYMYLSQMLRLQIRNEYEAALSLASQFQYAAQ
Ga0126376_1328575813300010359Tropical Forest SoilMRRKTIIVLTITLMVTAMVSVFSYLYIQQILRLGIQNAYET
Ga0126381_10002950173300010376Tropical Forest SoilMLRRKTIIVLVITLMVTAMVTVFSYLYVSQILRLRILNAN
Ga0126381_10508713313300010376Tropical Forest SoilMSRKSKIVLAITLMVAVMVSAFSYLYVSQVVRQRLNS
Ga0136449_10032233733300010379Peatlands SoilMLRRKTIIVLTITFMVTLMVSAFSYLYISQVLRLRIDNVNEAANQLTH
Ga0136449_10147133213300010379Peatlands SoilMLRRKTIIVLVITLMVTAMVTAFSYLYISQILRLRIANANE
Ga0126361_1096045413300010876Boreal Forest SoilMLRRKTIIVLVITLMVTVMVAAFSFLYISQILRLRIAFANELATSLTHQLAYA
Ga0150983_1022191723300011120Forest SoilMRRKTIIVLGITFMVTVMVTAFSYLYVSETLSQQITGAS
Ga0137384_1033133123300012357Vadose Zone SoilMLRRKTIIVLVITLMVTVMVTAFSYLYVSQILRLRITNAN
Ga0126375_1190944823300012948Tropical Forest SoilMFRRKTIIVLVITLMVATMVTAFSYLYISQILRLRIVGAFDTATSLTHQ
Ga0164298_1024194013300012955SoilMRRKTKIILAITFMVVVMVSAFSYLYISQLLRQRLAAAGDI
Ga0164307_1132314123300012987SoilMRRKTIIVLVITLMVTVLVSAFSYLYISQILRLRIVS
Ga0181526_1092443423300014200BogMLRRKTIIVLVITLMVTAMVAAFSYLYISQILRLRIANANETAANLTHQL
Ga0181522_1001396433300014657BogMRRKTTIVLAITLLVTVMAVAFSYFYLTQILAQHITGAY
Ga0137403_1146060223300015264Vadose Zone SoilMRRKTIIVLTITFMVMIMVLAFSYLYISQILRQRINSAHET
Ga0132256_10055896323300015372Arabidopsis RhizosphereMLRRKTIIVLTITMMVIVMVTAFSYLYISQILRLRIVNANETASNLTR
Ga0187818_1021544823300017823Freshwater SedimentMRRKAIIVFAITLMVAVMVTAFSYLYISQILRQRI
Ga0187820_113792813300017924Freshwater SedimentMFRRKTIIVLVITLMVTAMVTAFSYLYISQILRLRIAN
Ga0187824_1037099113300017927Freshwater SedimentMRRKTKIILAITFMVVVMVSAFSYLYISQLLRQRLTSA
Ga0187801_1047848523300017933Freshwater SedimentMRRKAIIVFAITLMVAVMVTAFSYLYISQILRQRITS
Ga0187808_1056754723300017942Freshwater SedimentMLRRKTIIVLVITLMVTAMVTAFSYLYISQILRLRITS
Ga0187781_1123867723300017972Tropical PeatlandMRRKTIIVLTITLMVTAMVSVFSYLYIQQILRLGIQN
Ga0187782_1131532913300017975Tropical PeatlandMLRRKTIIVLVITLMVTVMVSAFSYLYISQMLRLRLQSA
Ga0210403_1106283813300020580SoilMLRRKTIIVLVITLMVTVMVASFSYLYISQILRLRINYANET
Ga0210396_1090185113300021180SoilMLRRKTIIVLVITLMVTAMVTAFSYLYISQILRLGITSANETATSL
Ga0210388_1010174533300021181SoilMLRRKTIIVLVITVMVATLVTAFSILYISQILRLRISNAKE
Ga0210388_1125653513300021181SoilMLRRKTIIVLVITLMVTVMVSAFSFLYISQILRLRIANAYETATSLTHQPAY
Ga0210385_1010008313300021402SoilMLRRKTIIVLVITLMVTAMVTAFSYLYISQILRLGITSA
Ga0210391_1039711113300021433SoilMLRRKTIIVLVITVMVATLVTAFSILYISQILRLRISNAKETATSLTRQLAYAAA
Ga0210390_1037048423300021474SoilMRRKTIIVLGITFMVTVMVTAFSYLYISQILRQRITNAY
Ga0210402_1052052113300021478SoilMLRRKTIIVLTITFMMTVMVSAFSYLYISQILRLRIDNAQETA
Ga0126371_1091345223300021560Tropical Forest SoilMRRKTIIVLTITLMVTAMVSVFSYLYIQQILRLGIQNAYETA
Ga0126371_1277279223300021560Tropical Forest SoilMLRRKTIIVLTITMMVIVMVTAFSYLYISQILRLRIVNA
Ga0242649_103837123300022509SoilMLRRKTIIVLVITLMVTAMVTAFSYLYLSQILRLRIANANETATSLTHQLAYA
Ga0242659_107482413300022522SoilMLRRKTIIVLVITLMVTAMVTAFSYLYLSQILRLRIANANETAT
Ga0212123_1040140323300022557Iron-Sulfur Acid SpringMLRRKTIIVLVITLMVTVMVAAFSVLYISQILRLRIANANE
Ga0242678_106402813300022715SoilMLRRKTIIVLVITVMVTAMVAAFSYLYISQILRLRIAN
Ga0242661_100630733300022717SoilMLRRKTIIVLVITLMVTAMVAAFSYLYATQILRLRIA
Ga0242661_111125023300022717SoilMLRRKTIIVLVITLMVTAMVTAFSYLYISQILRLRIANANETAT
Ga0224568_101628713300024220Plant LitterMLRRKTIIVLVITLMVTAMVAAFSYLYISQILRLRIANANETASN
Ga0207692_1037572623300025898Corn, Switchgrass And Miscanthus RhizosphereMLRRKTIIVLVITLMVTAMVSAFSYLYVSQILRLRIT
Ga0207700_1031277523300025928Corn, Switchgrass And Miscanthus RhizosphereMRRKTIIVLVITLMVTVLVSAFSYLYISQILRLRIVSAYETA
Ga0207700_1125732423300025928Corn, Switchgrass And Miscanthus RhizosphereMLRRKTIIVLAITLMVTVMVTAFSYLYLSQILRLRIVNASDTANSLTH
Ga0207664_1052151313300025929Agricultural SoilMRRKTIIVLVITLMVTVMVSAFSYLYISQILRLRIVNAYETAA
Ga0207665_1006947913300025939Corn, Switchgrass And Miscanthus RhizosphereMLRRKTIIVLVITLMVTAMVSAFSYLYVSQILRLR
Ga0207665_1093115223300025939Corn, Switchgrass And Miscanthus RhizosphereMLRRKAIIVLTITLMVIVMVTAFSYLYISQILRLRIANANETAS
Ga0209470_138118823300026324SoilMRRKTIIVLVITLMVTVLVSAFSYLYISQILRLRIVSAYETATSLTHQL
Ga0209158_111841123300026333SoilMRRKTKIALAITFMVVVMVSAFSYLYISQLLRQRLNA
Ga0209219_104549723300027565Forest SoilMLRRKTIIVLVITLMVTVMVTAFSILYISQILRLRIA
Ga0209007_100362343300027652Forest SoilMLRRKTIIVLVITLMVATMVTAFSILYISQILRLRISNAKETATSLTRQLAYA
Ga0209736_101312113300027660Forest SoilMLRRKTIIVLVITLMVTVMVTAFSILYISQILRLRIANANDTATSLTHQLAY
Ga0209736_120191023300027660Forest SoilMLRRKTIIVLVITLMVTVMVTAFSILYISQILRLRIANANETATNLTHQLA
Ga0209009_108822113300027667Forest SoilMLRRKTIIVLVITLMVTVMVTAFSILYISQILRLRIANAN
Ga0209118_115279213300027674Forest SoilMRRKAIIVLIITFMVTMMVTAFSYLYISQILRLRITS
Ga0209448_1013769423300027783Bog Forest SoilMLRRKTIIVLVITLMVTAMVTAFSYLYISQILRLRIANANETATNLTH
Ga0209580_1041823923300027842Surface SoilMRRKIIIVLSITFMVAVMVTVFSVLYISQILNSRAR
Ga0209701_1015337813300027862Vadose Zone SoilMRRKTIIVLTLTFMVTVMVSAFSYLYISQVLRLRA
Ga0209167_1074219423300027867Surface SoilMLRRKTIIVLVITLMVTAMVSAFSYLYISQILRLRIANAY
Ga0209169_1010314713300027879SoilMLRRKTIIVLVITLMVTVMVAGFSFVYIRQIVRLRLENANTTAEKLVRQLVFTAEND
Ga0209067_1003407313300027898WatershedsMLRRKTIIVLAITLMVTVMVTAFSYLYLSQILRLRIANAHETATSLT
Ga0302219_1019631913300028747PalsaMFRRKTIIVLVVALMVTTMVTAFSYLYISQFLRLRIANDCD
Ga0311352_1122582923300029944PalsaMLRRKTIIVLVITFMVAAMVASFSYLYVSQILRLRIVNAN
Ga0311371_1109266213300029951PalsaMLRRKTIIVLVITFMVAAMVASFSYLYVSQILRLRIV
Ga0311346_1023145513300029952BogMRRKTIIVLAITLLVTVMVTAFSYLYISQILRQRIDNTYES
Ga0302179_1004832913300030058PalsaMRRKAIIVTGITFMVTVMVTAFSYLYISQILRQRITNA
Ga0311372_1175882923300030520PalsaMRRKFIIVTTITFMVTVTVSAFSYLYTSVILRMNIT
Ga0311357_1130671113300030524PalsaMFRRKTIIVLVVALMVTTMVTAFSYLYISQFLRLRIANDCDTADSLT
Ga0310038_1040618213300030707Peatlands SoilMLRRKAIIVLVITLMVTTMVSAFSYLYISQILRLRVA
Ga0075405_1123204823300030847SoilMRRKIIIVLAITFMVTVMVTAFSYLYISQILRQRI
Ga0075388_1134905023300030848SoilMLRRKTIIVLVITLMVMVMVSAFSYLYISQILRLRVSSTNETATNLTHQLA
Ga0302314_1129729023300030906PalsaMRRKAIIVTGITFMVTVMVTAFSYLYITQILRQRITSAYE
Ga0075382_1080120913300030917SoilMLRRKTIIVLVISLMVTVMVTAFSYLYLSQILRLRISNANETATS
Ga0075401_1175166423300030935SoilMRRKIIIVLAITFMVTVMVTAFSYLYISQILRQRIGTANE
Ga0265760_1032298013300031090SoilMRRKTIIVLGITFMVTVMVTAFSYLYVSETLSQQITGACDG
Ga0302324_10027907633300031236PalsaMRRKAIIVTGITFMVTVMVTAFSYLYITQILRQRIT
Ga0265325_1034593413300031241RhizosphereMLRRKTIIVLVITLMVTAMVTAFSYLYISQILRLRITNANETATSLTHQLA
Ga0170819_1592102423300031469Forest SoilMLRRKTIIVLVITLMVTAMVTAFSYLYVSQILRLRIVSANETA
Ga0310686_11389905513300031708SoilMRRKTIIVLAITLLVTVMAAAFSYLYISEILGQQISEA
Ga0307474_1066525823300031718Hardwood Forest SoilMLRRKTIIVLVITLMVTVMVTAFSFLYISQILRLRIANANE
Ga0307468_10226979023300031740Hardwood Forest SoilMRRKTKIILAITFMVVVMVSAFSYLYISQLLRQRL
Ga0318568_1078362313300031819SoilMRRKTKIVLAITFMVVVMVTAFSYLYISQLLRQRLN
Ga0307473_1054602823300031820Hardwood Forest SoilMRRKTKIVLAITFMVVTMVSAFSYLYISLFLRQRLNS
Ga0306926_1077232923300031954SoilMLRRKTIIVLAITLMVTVMVTTFSYLYVSQMLRWRITNAQETA
Ga0311301_1201386813300032160Peatlands SoilMLRRKTIIVLTITFMVTLMVSAFSYLYISQVLRLRID
Ga0315742_1316570913300032756Forest SoilMLRRKTIIVLVITLMVTVMVAAFSFLYISQILRLRIAFANELATSLTHQ
Ga0335079_1058684423300032783SoilMLRRKTIIVLAITLMVTTMVSAFSYLYISQILRLRIVNAHETASSLTRQIAFS
Ga0335079_1147362813300032783SoilMLRRKTIIVLAITFMVAAMVSAFSYLYISQILRLRIENAHE
Ga0335078_1178298723300032805SoilMLRRKTIIVLTIALMVTAMVSAFSYLYISQILRLRIANAYETATNLTHQLAYA
Ga0335080_1175876013300032828SoilMRRKTIIVLVITLMVTAMVSAFSYLYISQIHRQRIANAY
Ga0335084_1113190413300033004SoilMLRRKTIIVLVITLMVTAMVTAFSYLYISQILRLRIVNAYETATSLTHQ
Ga0335073_1039845923300033134SoilMRRKTIIVLVITLMVTAMVTAFSYLYISQILRLRIANAY
Ga0310914_1086586723300033289SoilMLRRKTIIVLAITLMVTAMVTAFSYLYVSQILRLRIAN
Ga0310811_1106120713300033475SoilMRRKTIIVLVITLMVTAMVTAFSYLYISQILRLRIAGAYETATSL


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