Metagenome Family F094244

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094244
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	51 residues
Representative Sequence	GLMSDADVALATRLLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Number of Associated Samples	98
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.94 %
% of genes near scaffold ends (potentially truncated)	97.17 %
% of genes from short scaffolds (< 2000 bps)	87.74 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.962 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (12.264 % of family members)
Environment Ontology (ENVO)	Unclassified (29.245 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (35.849 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.14% β-sheet: 10.20% Coil/Unstructured: 32.65%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00278	Orn_DAP_Arg_deC	32.08
PF02784	Orn_Arg_deC_N	30.19
PF03544	TonB_C	8.49
PF07228	SpoIIE	5.66
PF13185	GAF_2	4.72
PF03572	Peptidase_S41	0.94
PF02806	Alpha-amylase_C	0.94
PF00156	Pribosyltran	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0019	Diaminopimelate decarboxylase	Amino acid transport and metabolism [E]	62.26
COG1166	Arginine decarboxylase (spermidine biosynthesis)	Amino acid transport and metabolism [E]	62.26
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	8.49
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.94
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.94
COG0793	C-terminal processing protease CtpA/Prc, contains a PDZ domain	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.96 %
Unclassified	root	N/A	16.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.96 %
Unclassified	root	N/A	16.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.96 %
Unclassified	root	N/A	16.04 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	31.13 %
Unclassified	root	N/A	16.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	22.64 %
Unclassified	root	N/A	16.04 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	6.60 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	22.64 %
Unclassified	root	N/A	16.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.60 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	22.64 %
Unclassified	root	N/A	16.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.60 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.04 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	11.32 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.60 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	4.72 %
Candidatus Sulfotelmatomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas	1.89 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.04 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	9.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.60 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	3.77 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	1.89 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.94 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.04 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	9.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.60 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	3.77 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	1.89 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.94 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10393542	Not Available	666	Open in IMG/M
3300004082\|Ga0062384_100816851	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300004091\|Ga0062387_101280240	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300004092\|Ga0062389_100455989	All Organisms → cellular organisms → Bacteria	1415	Open in IMG/M
3300004463\|Ga0063356_102465843	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300005334\|Ga0068869_100554075	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300005446\|Ga0066686_10607878	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	743	Open in IMG/M
3300005518\|Ga0070699_101604318	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300005537\|Ga0070730_10853867	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300005591\|Ga0070761_10408033	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	829	Open in IMG/M
3300006052\|Ga0075029_100701535	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300006102\|Ga0075015_100045133	All Organisms → cellular organisms → Bacteria	2065	Open in IMG/M
3300006174\|Ga0075014_100201049	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300006174\|Ga0075014_100846800	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300006358\|Ga0068871_100216685	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1657	Open in IMG/M
3300006642\|Ga0075521_10073581	All Organisms → cellular organisms → Bacteria	1532	Open in IMG/M
3300009088\|Ga0099830_11665236	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300009156\|Ga0111538_12464711	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300009547\|Ga0116136_1082441	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300009616\|Ga0116111_1066188	All Organisms → cellular organisms → Bacteria → Acidobacteria	989	Open in IMG/M
3300009617\|Ga0116123_1073485	Not Available	938	Open in IMG/M
3300009623\|Ga0116133_1122322	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	671	Open in IMG/M
3300009632\|Ga0116102_1150844	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300009635\|Ga0116117_1013412	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2096	Open in IMG/M
3300009643\|Ga0116110_1130407	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300009644\|Ga0116121_1126371	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300009792\|Ga0126374_11593469	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300010304\|Ga0134088_10679082	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300010343\|Ga0074044_10871481	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	588	Open in IMG/M
3300010379\|Ga0136449_104068711	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	545	Open in IMG/M
3300011120\|Ga0150983_10603199	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	607	Open in IMG/M
3300011270\|Ga0137391_10754211	Not Available	805	Open in IMG/M
3300012210\|Ga0137378_11253969	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300012350\|Ga0137372_10573574	Not Available	831	Open in IMG/M
3300012363\|Ga0137390_10439160	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1282	Open in IMG/M
3300012685\|Ga0137397_10614927	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300012922\|Ga0137394_10247399	All Organisms → cellular organisms → Bacteria	1524	Open in IMG/M
3300014159\|Ga0181530_10445030	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300014491\|Ga0182014_10053433	All Organisms → cellular organisms → Bacteria	2757	Open in IMG/M
3300014493\|Ga0182016_10064586	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2753	Open in IMG/M
3300014498\|Ga0182019_10476299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	862	Open in IMG/M
3300014501\|Ga0182024_12597421	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	544	Open in IMG/M
3300014638\|Ga0181536_10249934	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	849	Open in IMG/M
3300015052\|Ga0137411_1015834	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300016341\|Ga0182035_11563122	Not Available	594	Open in IMG/M
3300017823\|Ga0187818_10339643	Not Available	662	Open in IMG/M
3300017925\|Ga0187856_1016085	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4006	Open in IMG/M
3300017925\|Ga0187856_1168575	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300017996\|Ga0187891_1049156	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1778	Open in IMG/M
3300018012\|Ga0187810_10023565	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2227	Open in IMG/M
3300018016\|Ga0187880_1271138	Not Available	741	Open in IMG/M
3300018025\|Ga0187885_10068443	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1777	Open in IMG/M
3300018025\|Ga0187885_10242351	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	825	Open in IMG/M
3300018026\|Ga0187857_10131996	All Organisms → cellular organisms → Bacteria	1196	Open in IMG/M
3300018044\|Ga0187890_10219168	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300018046\|Ga0187851_10454984	All Organisms → cellular organisms → Bacteria → Acidobacteria	729	Open in IMG/M
3300018047\|Ga0187859_10691098	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300019882\|Ga0193713_1102886	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300021475\|Ga0210392_11155572	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300021477\|Ga0210398_10450772	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300024295\|Ga0224556_1125700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300025442\|Ga0208034_1009728	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3322	Open in IMG/M
3300025442\|Ga0208034_1097462	Not Available	500	Open in IMG/M
3300025711\|Ga0207696_1126461	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300025922\|Ga0207646_10201527	All Organisms → cellular organisms → Bacteria	1798	Open in IMG/M
3300027768\|Ga0209772_10117811	Not Available	823	Open in IMG/M
3300027854\|Ga0209517_10069006	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2523	Open in IMG/M
3300027857\|Ga0209166_10577994	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300027898\|Ga0209067_10318636	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300027898\|Ga0209067_10764066	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300027905\|Ga0209415_10658539	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300028268\|Ga0255348_1052803	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300028379\|Ga0268266_10371631	All Organisms → cellular organisms → Bacteria	1347	Open in IMG/M
3300028572\|Ga0302152_10170863	Not Available	699	Open in IMG/M
3300028574\|Ga0302153_10065037	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300028788\|Ga0302189_10169265	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300028882\|Ga0302154_10265464	Not Available	852	Open in IMG/M
3300029817\|Ga0247275_1040622	All Organisms → cellular organisms → Bacteria	1349	Open in IMG/M
3300029907\|Ga0311329_10408214	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	948	Open in IMG/M
3300029913\|Ga0311362_10327141	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1570	Open in IMG/M
3300029987\|Ga0311334_10995801	Not Available	697	Open in IMG/M
3300030003\|Ga0302172_10302157	Not Available	517	Open in IMG/M
3300030020\|Ga0311344_10123616	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2863	Open in IMG/M
3300030507\|Ga0302192_10370661	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300030688\|Ga0311345_11064319	Not Available	601	Open in IMG/M
3300031128\|Ga0170823_15554679	All Organisms → cellular organisms → Bacteria → Proteobacteria	603	Open in IMG/M
3300031128\|Ga0170823_16546224	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300031236\|Ga0302324_101910885	Not Available	749	Open in IMG/M
3300031259\|Ga0302187_10389921	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300031524\|Ga0302320_10822221	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1023	Open in IMG/M
3300031546\|Ga0318538_10618222	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300031708\|Ga0310686_109484361	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300031711\|Ga0265314_10303238	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300031720\|Ga0307469_11659091	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300031720\|Ga0307469_12236087	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	533	Open in IMG/M
3300031770\|Ga0318521_10580530	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300031788\|Ga0302319_10075762	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5071	Open in IMG/M
3300031788\|Ga0302319_11450889	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300031912\|Ga0306921_12713802	Not Available	509	Open in IMG/M
3300032001\|Ga0306922_10059992	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3955	Open in IMG/M
3300032035\|Ga0310911_10230201	Not Available	1059	Open in IMG/M
3300032180\|Ga0307471_100075709	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2931	Open in IMG/M
3300032828\|Ga0335080_10330839	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1647	Open in IMG/M
3300033158\|Ga0335077_11195557	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300033433\|Ga0326726_10046212	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3805	Open in IMG/M
3300034090\|Ga0326723_0388108	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.40%
Host-Associated	Host-Associated	6.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.32%
Aquatic	Environmental → Aquatic	32.08%
Plants	Host-Associated → Plants	6.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.45%
Freshwater	Environmental → Aquatic → Freshwater	26.42%
Peat	Environmental → Terrestrial → Peat	18.87%
Sediment	Environmental → Aquatic → Sediment	5.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.89%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.13%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	26.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	18.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.66%
Loam	Environmental → Terrestrial → Soil → Loam	4.72%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	18.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.98%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	15.09%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.26%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	9.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.66%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	12.26%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	9.43%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	9.43%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.55%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.72%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.77%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.89%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.89%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.89%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.94%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.94%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.94%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.94%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.94%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009547	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009617	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025442	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes)	Environmental	Open in IMG/M
3300025711	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028268	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25.v5	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028572	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_1	Environmental	Open in IMG/M
3300028574	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_2	Environmental	Open in IMG/M
3300028788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300029817	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030003	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_3	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030507	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031259	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_3	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031711	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_103935421	3300001661	Forest Soil	LMSDADVALAARLLPHHAHVKFRALGHALFIQQPEPVLRAVTNFMESL*
Ga0062384_1008168512	3300004082	Bog Forest Soil	LMSDADVALATRLLPHHAHVKFRDLGHALFIQQPEPVLRAVTNFLESL*
Ga0062387_1012802402	3300004091	Bog Forest Soil	LGGLMSDADVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0062389_1004559892	3300004092	Bog Forest Soil	LQGTTELGGLMSDADVALAMRLLPYPAHVKFSNLGHALFIQQPETVLREVTKFLESMS*
Ga0063356_1024658431	3300004463	Arabidopsis Thaliana Rhizosphere	LQASPSLGGMMSDNDVQRACALLAHPVRVRFPTLGHALFIQNPEPILRSVTNFLESLEP*
Ga0068869_1005540751	3300005334	Miscanthus Rhizosphere	LLQASPSLGGMMTDHDVNRACTLLARPVRVKFPTLGHALFIQNPEPVLRAVTNFLESLDV
Ga0066686_106078781	3300005446	Soil	TLLLQGSRDLGGLMSDADVALATRLLPHHTHVKFRTLGHALFIQQPEPVLRAVTNFLESLSD*
Ga0070699_1016043181	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	LQASGDLGGLMSDADVALATRLLPHHTHVKFHTLGHALFIQQPEPVLRAVTNFLESLSE*
Ga0070730_108538672	3300005537	Surface Soil	PELGGLMSDADVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0070761_104080333	3300005591	Soil	LQGSPELGGLMSDADVTLAKRLLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0075029_1007015351	3300006052	Watersheds	LPHHTHVKFRNLGHALFIQQPDPVLRAVTNFLESLG*
Ga0075015_1000451331	3300006102	Watersheds	NRELGGLMTDADVALATRLLLHHTHVYLRSLGHALFIQQPEPVLRAVTNFLESL*
Ga0075014_1002010491	3300006174	Watersheds	DVALATRLLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0075014_1008468002	3300006174	Watersheds	LMTDADVALAKRILPHHTHVYLRSLGHALFIQQPEPVLRAVTNFLESL*
Ga0068871_1002166853	3300006358	Miscanthus Rhizosphere	RPVRVKFPTLGHALFIQNPEPVLRAVTNFLESLDV*
Ga0075521_100735811	3300006642	Arctic Peat Soil	PHHAHVRFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0099830_116652362	3300009088	Vadose Zone Soil	ALATSVLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESLG*
Ga0111538_124647112	3300009156	Populus Rhizosphere	SLGGMMSDNDVQRACALLAHPVRVRFPTLGHALFIQNPEPILRSVTNFLESLEP*
Ga0116136_10824411	3300009547	Peatland	GTPELGGLMSDADVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0116111_10661883	3300009616	Peatland	DVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0116123_10734852	3300009617	Peatland	RELGGLMSDADVALATRLLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0116133_11223222	3300009623	Peatland	QGAPELGGLMSDADVALATRLLPHHAHVKFQNLGHALFIQQPEPVLRAVTNFLESLG*
Ga0116102_11508441	3300009632	Peatland	RLLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0116117_10134121	3300009635	Peatland	LMSDADVAMATRLLAHHTHVRFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0116110_11304072	3300009643	Peatland	GLMSDADVALATRLLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0116121_11263712	3300009644	Peatland	ELGGLMSDADVALATRLLPHHAHVKFQNLGHALFIQQPEPVLRAVTNFLESLG*
Ga0126374_115934692	3300009792	Tropical Forest Soil	MGGMMSDADVTLAEKMLPHHTHVYLRTVGHALFLQQPEPVLRAVTNFLEAL*
Ga0134088_106790821	3300010304	Grasslands Soil	RDLGGLMSDADVALATRLLPHHTHVKFRTLGHALFIQQPEPVLRAVTNFLESLSE*
Ga0074044_108714813	3300010343	Bog Forest Soil	PHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0136449_1040687112	3300010379	Peatlands Soil	LPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0150983_106031991	3300011120	Forest Soil	LMSDADVTLAKRLLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0137391_107542111	3300011270	Vadose Zone Soil	LLLQGSQELGGLMSDADVALATRVLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0137378_112539691	3300012210	Vadose Zone Soil	NAVHVRFPTLGHALYIQQPEPVLREVTGFLEKLRIID*
Ga0137372_105735741	3300012350	Vadose Zone Soil	ADVALATRLLPHHTHVRFRNIGHALFIQQPEPVLRAVTNFMEALI*
Ga0137390_104391603	3300012363	Vadose Zone Soil	LGPRVLAIHAIRLSDADIALATRVLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0137397_106149271	3300012685	Vadose Zone Soil	TRLLPHHTHVKFRALGHALFIQQPEPVLRAVTNFLESLSE*
Ga0137394_102473992	3300012922	Vadose Zone Soil	MSDADVALAARLLPHHAHVKFRALGHALFIQQPEPVLRAITNFLESL*
Ga0181530_104450302	3300014159	Bog	LMSDADVALATRLLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0182014_100534331	3300014491	Bog	QASQELGGLMSDADVALATRLLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0182016_100645863	3300014493	Bog	DGETVLRGIGCATLLLQGSPELGGLMSDADVALATKLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0182019_104762992	3300014498	Fen	ASPELGGLMSDADVALATRLLPHHAHVRFRNLGHALFIQQPEPVLRAVTNFLESL*
Ga0182024_125974211	3300014501	Permafrost	TLLLQGTPELGGLMSDADVALATRLLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0181536_102499341	3300014638	Bog	TRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESLG*
Ga0137411_10158342	3300015052	Vadose Zone Soil	LRGIKCSTLLLQASRELGGLMSDADVALATRLLPHHTHVKFRALGHALFIQQPEPVLRAVTNFLESLSE*
Ga0182035_115631222	3300016341	Soil	ALLGITCPTLLLQANREVGGLMHDADVALAEKILPHHTHVYFRSVGHALFIQQPEPVLRAITNFLESL
Ga0187818_103396432	3300017823	Freshwater Sediment	DVALATRMLPHHTHVKFRNLGHALFIQQPEPVLRVVTNFLEAL
Ga0187856_10160854	3300017925	Peatland	LLPHHTHVKFRNLGHALFIQQPEPVLRAATNFLESL
Ga0187856_11685751	3300017925	Peatland	GTPELGGLMSDADVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0187891_10491561	3300017996	Peatland	QELGGLMSDADVALATRLLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0187810_100235653	3300018012	Freshwater Sediment	ILPHHTHVHFRSLGHALFIQQPEPVLRAVTNFLESLG
Ga0187880_12711382	3300018016	Peatland	RLLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLEAL
Ga0187885_100684433	3300018025	Peatland	MSDADVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0187885_102423511	3300018025	Peatland	LGGLMSDADVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0187857_101319961	3300018026	Peatland	ELGGLMSDADVTLATRLLTHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0187890_102191682	3300018044	Peatland	LAHHTHVRMRNLGHALFIQQPEPVLRAVTNFLESL
Ga0187851_104549842	3300018046	Peatland	VAEQRLRHHAHVKFRDLGHALFIQQPEPVLRAVTNFLESL
Ga0187859_106910981	3300018047	Peatland	TLLLQASQELGGLMSDADVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0193713_11028862	3300019882	Soil	LGGLMSDADVALATRLLPHHTHVKFRSLGHALFIQQPEPVLRAVTNFLESL
Ga0210392_111555721	3300021475	Soil	TLLLQGAHELGGLMSEADVALATRLLPHHTHVKFRNLGHALFIQQPEPVLRAVMNFLEAL
Ga0210398_104507721	3300021477	Soil	DADVTLAKRLLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0224556_11257001	3300024295	Soil	DIALATRLLPHHAHVKFHNLGHALFIQQPEPVLRAVTNFLESL
Ga0208034_10097284	3300025442	Peatland	QGTPELGGLMSDADVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0208034_10974622	3300025442	Peatland	GGLMSDADVALATRLLPHHTHVKFRNLGHALFIQQPEPVLRAATNFLESL
Ga0207696_11264611	3300025711	Switchgrass Rhizosphere	ALLLQASPSLGGMMSDNDVQRACALLAHPVRVRFPTLGHALFIQNPEPILRSVTNFLESLEP
Ga0207646_102015273	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	ELGGLMSDADVALATRLLTHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0209772_101178111	3300027768	Bog Forest Soil	QATPELGGLMSDADVALAASTLLHHAHVKFRNLGHALFIQQPDPVLRAVTNFLESL
Ga0209517_100690061	3300027854	Peatlands Soil	DVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0209166_105779942	3300027857	Surface Soil	PELGGLMSDADVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0209067_103186363	3300027898	Watersheds	VALATRLLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESLG
Ga0209067_107640662	3300027898	Watersheds	LLLQASRELGGLMSDADVALATRLLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0209415_106585391	3300027905	Peatlands Soil	ADVALATRLLPHHTHVRFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0255348_10528031	3300028268	Soil	LTHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0268266_103716313	3300028379	Switchgrass Rhizosphere	PALLLQASPSLGGMMTDHDVNRACTLLARPVRVKFPTLGHALFIQNPEPVLRAVTNFLESLDV
Ga0302152_101708631	3300028572	Bog	LQGSPELGGLMSDADVAIASRLLPHHAHVKFRGLGHALFIQQPEPVLRAVTNFLESL
Ga0302153_100650372	3300028574	Bog	LMSDADVAIASRLLPHHAHVKFRGLGHALFIQQPEPVLRAVTNFLESL
Ga0302189_101692651	3300028788	Bog	VALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0302154_102654641	3300028882	Bog	SDADVAIASRLLPHHAHVKFRGLGHALFIQQPEPVLRAVTNFLESL
Ga0247275_10406222	3300029817	Soil	LLPHHTHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0311329_104082143	3300029907	Bog	VLRGIGCATLLLQGSPELGGLMSDADVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0311362_103271411	3300029913	Bog	DGSSLEGWDGETVLRGIGCATLLLQGSPELGGLMSDADVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0311334_109958012	3300029987	Fen	PTLLLQANRELGGLMSDADVALATRILPHHAHVQLRTLGHALFIQQPEPVLRAVTNFLES
Ga0302172_103021571	3300030003	Fen	NRELGGLMSDADVALATRILPHHAHVQLRTLGHALFIQQPEPVLRAVTNFLESL
Ga0311344_101236161	3300030020	Bog	MSDADVAIASRLLPHHAHVKFRGLGHALFIQQPEPVLRAVTNFLESL
Ga0302192_103706612	3300030507	Bog	ATLLLQGSPELGGLMSDADVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLES
Ga0311345_110643191	3300030688	Bog	ADVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0170823_155546793	3300031128	Forest Soil	LGGLMSDADVALAARLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0170823_165462243	3300031128	Forest Soil	LKLLAHPVHVSFPTLGHALYMQQPEPVLRALNNFLESL
Ga0302324_1019108852	3300031236	Palsa	SDADVALATRLLPHHAHVKFRDLGHALFIQHPEPVLRAVTNFLESL
Ga0302187_103899211	3300031259	Bog	DGETVLRGIGCATLLLQGSPELGGLMSDADVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0302320_108222213	3300031524	Bog	LQGSPELGGLMSDADVALATKLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0318538_106182222	3300031546	Soil	TLLLQASPQFGALMSDEDVALALRLLKHPVHVRFDNLGHGLYMQQPEPVLRAITNFLDSLEE
Ga0310686_1094843611	3300031708	Soil	TLLLQASQELGGLMSDADVALATRLLPHHAHVKFRDLGHALFIQHPEPVLRAVTNFLESL
Ga0265314_103032382	3300031711	Rhizosphere	DVALAKRLLPHHTHVKLRNLGHALFIQQPEPVLRAVTNFLESL
Ga0307469_116590911	3300031720	Hardwood Forest Soil	LLQGSPELGGLMSDADVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRVVTNFLESL
Ga0307469_122360871	3300031720	Hardwood Forest Soil	HHTHVKFRTLGHALFIQQPEPVLRAVTNFLESLSE
Ga0318521_105805301	3300031770	Soil	LQASPQFGALMSDEDVALALRLLKHPVHVRFDNLGHGLYMQQPEPVLRAITNFLDSLEE
Ga0302319_100757626	3300031788	Bog	LLQGSPELGGLMSDADVALATRLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0302319_114508891	3300031788	Bog	VLRGIGCATLLLQGSPELGGLMSDADVALATKLLPHHAHVKFRNLGHALFIQQPEPVLRAVTNFLESL
Ga0306921_127138021	3300031912	Soil	ITCPTLLLQANREVGGLMHDADVALAEKILPHHTHVYFRSVGHALFIQQPEPVLRAITNFLESL
Ga0306922_100599921	3300032001	Soil	MSDEDVALALRLLKHPVHVRFDNLGHGLYMQQPEPVLRAITNFLDSLEE
Ga0310911_102302011	3300032035	Soil	SDEDVALALRLLKHPVHVRFDNLGHGLYMQQPEPVLRAITNFLDSLEE
Ga0307471_1000757091	3300032180	Hardwood Forest Soil	VALATRLLPHHTHVKVRTLGHALFIQQPEPVLRAVTNFLESLSD
Ga0335080_103308392	3300032828	Soil	MNDDDVALAARLLLHHVHVKFRTLGHALFIQQPEPVLRAVTNFLESL
Ga0335077_111955572	3300033158	Soil	TSLLAHHTHVRFRSLGHALFIQQPDPVLRAVTNFLESL
Ga0326726_100462121	3300033433	Peat Soil	GCCLGERILPHHTHVYLRSLGHALFMQQPEPVLPAVTNFLESL
Ga0326723_0388108_430_603	3300034090	Peat Soil	LQASRELGGLMSDADVALATRLLPHHTHVRFRTLGHALFIQQPEPVLRAVTNFLESL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094244

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences