NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F094234

Metagenome / Metatranscriptome Family F094234

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F094234
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 51 residues
Representative Sequence MSWPVILSGVVCVAMLALGFNLLLPLGSGLETVCVLIAVASAMVFFGLVDDA
Number of Associated Samples 78
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 83.02 %
% of genes near scaffold ends (potentially truncated) 23.58 %
% of genes from short scaffolds (< 2000 bps) 97.17 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction Yes
3D model pTM-score0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (64.151 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(31.132 % of family members)
Environment Ontology (ENVO) Unclassified
(35.849 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(67.925 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 50.00%    β-sheet: 0.00%    Coil/Unstructured: 50.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF11154DUF2934 34.91
PF05443ROS_MUCR 27.36
PF12221HflK_N 1.89
PF13191AAA_16 0.94
PF00313CSD 0.94
PF08734GYD 0.94
PF16177ACAS_N 0.94
PF00872Transposase_mut 0.94
PF01425Amidase 0.94
PF02129Peptidase_S15 0.94
PF02195ParBc 0.94
PF16576HlyD_D23 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG4957Predicted transcriptional regulatorTranscription [K] 27.36
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 0.94
COG3328Transposase (or an inactivated derivative)Mobilome: prophages, transposons [X] 0.94
COG4274Uncharacterized conserved protein, contains GYD domainFunction unknown [S] 0.94


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A64.15 %
All OrganismsrootAll Organisms35.85 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001593|JGI12635J15846_10273063All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1072Open in IMG/M
3300003219|JGI26341J46601_10031579Not Available1716Open in IMG/M
3300003505|JGIcombinedJ51221_10199932All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum811Open in IMG/M
3300003505|JGIcombinedJ51221_10363207Not Available588Open in IMG/M
3300004092|Ga0062389_101432266All Organisms → cellular organisms → Bacteria → Proteobacteria875Open in IMG/M
3300004092|Ga0062389_104912730Not Available504Open in IMG/M
3300004152|Ga0062386_101469270Not Available568Open in IMG/M
3300005434|Ga0070709_10529934All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales899Open in IMG/M
3300005439|Ga0070711_101534112Not Available582Open in IMG/M
3300005591|Ga0070761_10165683All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1299Open in IMG/M
3300005602|Ga0070762_10267642Not Available1068Open in IMG/M
3300005610|Ga0070763_10621266Not Available628Open in IMG/M
3300006052|Ga0075029_100408407Not Available884Open in IMG/M
3300006052|Ga0075029_100503578All Organisms → cellular organisms → Bacteria → Proteobacteria800Open in IMG/M
3300006059|Ga0075017_100317252All Organisms → cellular organisms → Bacteria1154Open in IMG/M
3300006059|Ga0075017_101165969All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria603Open in IMG/M
3300006174|Ga0075014_100596874All Organisms → cellular organisms → Bacteria → Proteobacteria631Open in IMG/M
3300009521|Ga0116222_1439005Not Available569Open in IMG/M
3300010339|Ga0074046_10301642All Organisms → cellular organisms → Bacteria984Open in IMG/M
3300010339|Ga0074046_10478635Not Available745Open in IMG/M
3300011120|Ga0150983_12647417Not Available541Open in IMG/M
3300012181|Ga0153922_1125648Not Available592Open in IMG/M
3300012951|Ga0164300_10493799Not Available698Open in IMG/M
3300012951|Ga0164300_11111900Not Available517Open in IMG/M
3300012957|Ga0164303_11540705Not Available504Open in IMG/M
3300012958|Ga0164299_11672095Not Available504Open in IMG/M
3300012960|Ga0164301_10263737Not Available1139Open in IMG/M
3300012984|Ga0164309_10206840Not Available1354Open in IMG/M
3300012984|Ga0164309_10418909All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1004Open in IMG/M
3300012989|Ga0164305_10635139All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales863Open in IMG/M
3300012989|Ga0164305_10912253Not Available739Open in IMG/M
3300013306|Ga0163162_13228939Not Available523Open in IMG/M
3300015206|Ga0167644_1027473All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae2352Open in IMG/M
3300019184|Ga0184590_111773Not Available583Open in IMG/M
3300019185|Ga0184587_131645All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales892Open in IMG/M
3300019190|Ga0184600_125932Not Available716Open in IMG/M
3300020579|Ga0210407_10416467Not Available1051Open in IMG/M
3300020579|Ga0210407_10533613Not Available916Open in IMG/M
3300020579|Ga0210407_10723110Not Available771Open in IMG/M
3300020579|Ga0210407_10731841Not Available766Open in IMG/M
3300020579|Ga0210407_10755721Not Available752Open in IMG/M
3300020580|Ga0210403_11375000Not Available536Open in IMG/M
3300020581|Ga0210399_10315545All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1305Open in IMG/M
3300020582|Ga0210395_10339049Not Available1130Open in IMG/M
3300020583|Ga0210401_11073336All Organisms → cellular organisms → Bacteria → Proteobacteria664Open in IMG/M
3300021168|Ga0210406_10737690Not Available755Open in IMG/M
3300021170|Ga0210400_10434138Not Available1084Open in IMG/M
3300021171|Ga0210405_10168304Not Available1736Open in IMG/M
3300021171|Ga0210405_10915656Not Available665Open in IMG/M
3300021178|Ga0210408_10092423All Organisms → cellular organisms → Bacteria2375Open in IMG/M
3300021178|Ga0210408_11347273Not Available539Open in IMG/M
3300021180|Ga0210396_11148787Not Available652Open in IMG/M
3300021403|Ga0210397_10243987Not Available1301Open in IMG/M
3300021403|Ga0210397_10512207Not Available910Open in IMG/M
3300021405|Ga0210387_10916487All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales770Open in IMG/M
3300021405|Ga0210387_11587868All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300021405|Ga0210387_11766279Not Available522Open in IMG/M
3300021420|Ga0210394_11189476Not Available655Open in IMG/M
3300021474|Ga0210390_10193721All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1719Open in IMG/M
3300021474|Ga0210390_10368293Not Available1215Open in IMG/M
3300021479|Ga0210410_10190301All Organisms → cellular organisms → Bacteria1837Open in IMG/M
3300021559|Ga0210409_10418334Not Available1198Open in IMG/M
3300022523|Ga0242663_1049859Not Available735Open in IMG/M
3300022726|Ga0242654_10302834Not Available588Open in IMG/M
3300023539|Ga0247555_102055Not Available654Open in IMG/M
3300023662|Ga0247545_104762Not Available559Open in IMG/M
3300025915|Ga0207693_10988934All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales643Open in IMG/M
3300025916|Ga0207663_10863694Not Available722Open in IMG/M
3300027505|Ga0209218_1014141All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1428Open in IMG/M
3300027676|Ga0209333_1139718Not Available653Open in IMG/M
3300027767|Ga0209655_10187722All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria681Open in IMG/M
3300027812|Ga0209656_10070401All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1908Open in IMG/M
3300027812|Ga0209656_10255654Not Available826Open in IMG/M
3300027812|Ga0209656_10367381Not Available651Open in IMG/M
3300027812|Ga0209656_10461569All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria560Open in IMG/M
3300027824|Ga0209040_10440153Not Available596Open in IMG/M
3300027855|Ga0209693_10055415All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1951Open in IMG/M
3300028906|Ga0308309_10330266All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1296Open in IMG/M
3300030763|Ga0265763_1011312Not Available837Open in IMG/M
3300030805|Ga0265756_107794All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria657Open in IMG/M
3300030842|Ga0075404_10685892Not Available825Open in IMG/M
3300030844|Ga0075377_11695391Not Available568Open in IMG/M
3300030879|Ga0265765_1043843Not Available600Open in IMG/M
3300030884|Ga0265758_102045All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales840Open in IMG/M
3300030885|Ga0265743_111280All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum623Open in IMG/M
3300030885|Ga0265743_114995All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovastum → Rhodovastum atsumiense571Open in IMG/M
3300030913|Ga0265759_101613All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales936Open in IMG/M
3300030916|Ga0075386_11856341Not Available564Open in IMG/M
3300030935|Ga0075401_11948876Not Available706Open in IMG/M
3300031022|Ga0138301_1654286Not Available676Open in IMG/M
3300031057|Ga0170834_106266618Not Available514Open in IMG/M
3300031057|Ga0170834_108065157Not Available779Open in IMG/M
3300031128|Ga0170823_15007455Not Available797Open in IMG/M
3300031231|Ga0170824_117514890Not Available1084Open in IMG/M
3300031231|Ga0170824_122971352Not Available1007Open in IMG/M
3300031469|Ga0170819_15499274Not Available531Open in IMG/M
3300031469|Ga0170819_17264494Not Available852Open in IMG/M
3300031474|Ga0170818_106508545All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales757Open in IMG/M
3300031474|Ga0170818_108050324Not Available901Open in IMG/M
3300031708|Ga0310686_102792262Not Available605Open in IMG/M
3300031708|Ga0310686_116808266All Organisms → cellular organisms → Bacteria → Proteobacteria502Open in IMG/M
3300031718|Ga0307474_10586864Not Available878Open in IMG/M
3300032120|Ga0316053_104051All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales890Open in IMG/M
3300032160|Ga0311301_10032539All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales13320Open in IMG/M
3300032515|Ga0348332_10180083All Organisms → cellular organisms → Bacteria588Open in IMG/M
3300032515|Ga0348332_11398018Not Available706Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil31.13%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil22.64%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil9.43%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil8.49%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.66%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds4.72%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil4.72%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.77%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.89%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.89%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter1.89%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.94%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.94%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.94%
Attine Ant Fungus GardensHost-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens0.94%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300003219Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012181Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaGHost-AssociatedOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300015206Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))EnvironmentalOpen in IMG/M
3300019184Soil microbial communities from Bohemian Forest, Czech Republic ? CSA2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019185Soil microbial communities from Bohemian Forest, Czech Republic ? CSE2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019190Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE3 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022523Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022726Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300023539Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023662Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSE5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027505Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027676Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027767Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027824Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030763Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030805Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030842Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030844Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030879Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030884Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030885Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030913Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030916Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030935Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031022Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031469Fir Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300032120Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1027306323300001593Forest SoilMSWPVIVSGVVCVTMLAPGFNLLLPLGSGLETMCVLIAVASAMVFFGLVDVA*
JGI26341J46601_1003157923300003219Bog Forest SoilMSWPVILSGAACVAMLALGFDLLLPLGSGLESVCVLTGVASAMVFFGLVEGA*
JGIcombinedJ51221_1019993223300003505Forest SoilMSWPVILSGVVCVAMLALGFNLLLSLGSGFETVCTLIGVASAMIFFGLVDDA*
JGIcombinedJ51221_1036320713300003505Forest SoilMSWPVILSGVVCVTTLALGFNLVLPLGSGFETVCILIAVASAMVFFGLVEDA*
Ga0062389_10143226633300004092Bog Forest SoilMSWPVIWSGVVCVAMLALGFNLLLPLGSSFEAVCILIGVASAMVFFGLVDDA*
Ga0062389_10491273023300004092Bog Forest SoilMRALAATPWEGPMSWPVFLSGVVCVTMLALGLNLLLPLGSGLETVCVLTGVASAMIFFGLVEGA*
Ga0062386_10146927023300004152Bog Forest SoilMSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLIAVACAMVFFGLADGA*
Ga0070709_1052993413300005434Corn, Switchgrass And Miscanthus RhizosphereMSWPVILSGVVCVAMLALGFNLLLPLGSGFETVCILIGVASAMVF
Ga0070711_10153411223300005439Corn, Switchgrass And Miscanthus RhizosphereCVAMLALGFNLLLPLGSGLETVCVLIAVASAMVFLGLADDA*
Ga0070761_1016568313300005591SoilMSWLVILSGLVCVTMLALGFNLLLPVGSGFETVCILIGVASAMIFFGLVDDT*
Ga0070762_1026764223300005602SoilMSWPVILSGVLCVAMLALGFNLLLPLGSGLETVCVLIAVASAMVFFGLVEDA*
Ga0070763_1062126623300005610SoilMSWPVILSGVVFVAMLALGFNLLLPLGSGFETVCVLIGVVSAMIFFGLVDDA*
Ga0075029_10040840723300006052WatershedsMSWPVILSGVVCVTMLALGFNLLLPLGSGFETACILIGVASAMIFFGLVDDA*
Ga0075029_10050357813300006052WatershedsLSGGLSEVPMRWPVIMSGVTCVAMLALGLNLLLPLGSGLETVCLLAGVASAMVFFGLVDGA*
Ga0075017_10031725223300006059WatershedsMRWPVIMSGVVCVAMLALGFNLLLPLGSGLETVCDLAGVASAMVFFCLVEGA*
Ga0075017_10116596913300006059WatershedsVILSGVVCVAMLALGFNSLLPLGSGLETVCVLIAVASAMVFFGLVDDA*
Ga0075014_10059687413300006174WatershedsMRWPVIMSGVTCVAMLALGLNLLLPLGSGLETVCLLAGVASAMVFFGLVDGA*
Ga0116222_143900523300009521Peatlands SoilMSWPVILSGVVCVTMLALGFNLLLPLGSGLETACVLIAVASAMVFFGLEDGA*
Ga0074046_1030164223300010339Bog Forest SoilPVILSGAACVAMLALGFDLLLPLGSGLESVCVLTGVASAMVFFGLVEGA*
Ga0074046_1047863523300010339Bog Forest SoilWPPPQLEVPMSWPVISSGAVCVVMLALGFDLLLPLSSGLESVCILTGVASAMVFFGLVEGA*
Ga0150983_1264741723300011120Forest SoilVSWPVIVSCVVCVTMLALGFNLLLPLGSGLETVCVLIGVASAMVFFGLVDDA*
Ga0153922_112564823300012181Attine Ant Fungus GardensMSWPVILSGVVCATMLALGFNLLLPLGSGLETVCVLIAVASATVFFGLMDGA*
Ga0164300_1049379923300012951SoilMNWPVILSGVVCVTTLALGFNLLLPLGSGFETVCILIGVASAMVFFGLVDDA*
Ga0164300_1111190023300012951SoilMSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLIAVASAMVFLGLADDA*
Ga0164303_1154070513300012957SoilMSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLLGIASAMVFFGLVDNA*
Ga0164299_1167209523300012958SoilMSWPVILSGVVCVAMLALGFNLLLPLGSGLETVCVLLAVASAMVFFGLVDDA*
Ga0164301_1026373723300012960SoilSGVLCVAMLALGFNLLFPLGGLDTVCVLTGVASAMVFFGLVDGA*
Ga0164309_1020684023300012984SoilMSWPVILSGVVCVAMLVLGFNSLLPLGSGLETVCVLIAVASAMVFFGLLDDA*
Ga0164309_1041890913300012984SoilMSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVFIAVASAVVFFGLVDGA*
Ga0164305_1063513923300012989SoilMSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLIGVASAMAFFGLVDDA*
Ga0164305_1091225313300012989SoilMSWHVILSRVVCVAMLALGFNLLLPLGSGLETVCVLIGIASAMVFLGLADDA*
Ga0163162_1322893923300013306Switchgrass RhizosphereMSWPVILSGVACVTMLALGFNLLLPLGSGLETVCVLIGVASAMVFFGLVDDA*
Ga0167644_102747323300015206Glacier Forefield SoilMSWPVILSGVVCVAMLALGFNSLLPLGSGLETVCVLIAVASAMVSFSLVDGP*
Ga0184590_11177323300019184SoilMSWPVIVSGVVCVTMLAPGFNLLLPLGSGLETMCVLIAVASAMVFFGLVDGA
Ga0184587_13164533300019185SoilMSWPVIVSGVVCVTMLAPGFNLLLPLGSGLETMCVLIAVASAMVFFGLVDDA
Ga0184600_12593223300019190SoilMSWPVILSGVVCVAMLALGFNLLLSLGSGFETVCTLIGVASAMIFFGLVDDA
Ga0210407_1041646713300020579SoilEVPMSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLIAVASAMVFFGLVDDA
Ga0210407_1053361323300020579SoilMSWPVILSGVVCVTMLALGFNLLLPVGNGLETACVLIAVASAIVFFGLMDGA
Ga0210407_1072311013300020579SoilMSWPVILSGVLCVAMLAQGFNLLLPLGSGFETVCILIGVASAMIFFGLVDDA
Ga0210407_1073184113300020579SoilMSGPAILSGLVCVAMLALGFNLLLPLGSGFETVCILIGIASAMIFFGLVDDA
Ga0210407_1075572123300020579SoilMSWPVILSGVVFVAMLALGFNLLLPLGSGFETVCVLIGVVSAMIFFGLVDDA
Ga0210403_1137500023300020580SoilMSWPVILSGVVCVAMLALGFNLLLPLGSGFETVCILIGVASAMIFFGLVDDA
Ga0210399_1031554513300020581SoilMNGPAILSGVICVAMLALGFNLLLPLGSGFETVCVLTGVAAAMVFFGLVEDA
Ga0210395_1033904933300020582SoilMSWPVIVSGVVCVTMLAPGFNLLLPLGSGLETMCVLIAVASAMVFFGLVDVA
Ga0210401_1107333633300020583SoilMSWPVILSGVVCVAMLALGFNLLLPLGSGLETVCVLIAVASAMVFFGLVDDA
Ga0210406_1073769013300021168SoilMSWPVVLSGVVCVTMLALGFNLLLPVGNGLETACVLIAVASAIVFFGLI
Ga0210400_1043413833300021170SoilMSWPVILSGVVCVAMLAQGFNLLLPLGSGFETVCILIGVASAMIFFGLVDDA
Ga0210405_1016830433300021171SoilMSWPVILSGVVCVTTLALGFNLVLPLGSGFETVCILIAVASAMVFFGLVEDA
Ga0210405_1091565623300021171SoilTNWEVPMSWPVVLGGVVCVTMLALGFNLLLPVGNGLETACVLIAVASAIVFFGLMDGA
Ga0210408_1009242323300021178SoilGLTNWEVPMSWPVILSGVLCVAMLAQGFNLLLPLGSGFETVCILIGVASAMIFFGLVDDA
Ga0210408_1134727323300021178SoilMNGPAILSGVVCVAMLALGFNLLLPLGSGLDTVRVLTGVASAMVFFGLVEAA
Ga0210396_1114878713300021180SoilMSWPVILSGVVCVTMLALGFNLLLPVGNGLETACVLIAVASAIVFFGL
Ga0210397_1024398733300021403SoilMSWPVILSGVVCVAMLALGFNLFLPLGSGFETVCILIGVASAMIFFGLVDDA
Ga0210397_1051220733300021403SoilMSWPVILSGVVCVTMLALGFNLLLPVGSGLETACVLIAVASAMVFFGLMDGA
Ga0210387_1091648713300021405SoilVKRGLTNWEVPMSWPVVLSGVVCVTMLALGFNLLLPVGNGLETACVLIAVASAIVFFGLMDGA
Ga0210387_1158786823300021405SoilMSWSVILTGVVCVAMLAQGFNLLLPLSSGLEAVCVLTGVASAIVFFGLVEDV
Ga0210387_1176627913300021405SoilALGFNLLLPLGSGLETVCVLIAVASAMVFFGLVDDA
Ga0210394_1118947613300021420SoilAMLVLGFNSLLPLGSGLETVCVLIAVASAMVFFGLVDDA
Ga0210390_1019372113300021474SoilMSWPVILSGVVCVTTLALGFNLVLPLGSGFETVCILIAVASAMVFFGVE
Ga0210390_1036829333300021474SoilVILSGVVCVAMLALGLNLLLPLGSGLETVCVLIAVASAMVFFGLSDGA
Ga0210410_1019030123300021479SoilMSWPVILSGVVCVAMLALGFNLLLPLGSGLETVCVLTGVASAIVFFGLVEDV
Ga0210409_1041833433300021559SoilMSWPVILSGVVCVTMLALGFNLLLPVGNGLEAACVLIAVASAIVFFGLMDGA
Ga0242663_104985923300022523SoilMNGPAILSGVVCVAMLALGFNLLLSLGSGFETVCTLIGVASAMIFFGLVDDA
Ga0242654_1030283413300022726SoilMNGPAILSGVICVAMLALGFNLLLPLGSGLDTVCVLTGVASAMVFFGLVEDA
Ga0247555_10205523300023539SoilMSWPVILSGAVCVTMLALGFNLLLPLGSGLETVCILMGVASAMVFFGLVDGA
Ga0247545_10476223300023662SoilMSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCILMGVASAMVFFGLVDGA
Ga0207693_1098893423300025915Corn, Switchgrass And Miscanthus RhizosphereMSWPVILSGVACVTMLALGFNLLLPLGSGFETVCILIGVASAMVFFGLVDDA
Ga0207663_1086369423300025916Corn, Switchgrass And Miscanthus RhizosphereMSWPVILSGVVCVAMLALGFNLLLPLGSGLETVCVLIAVASAMVFLGLADDA
Ga0209218_101414113300027505Forest SoilMSWPVILSGVVCVAMLALGFNLLLPLGSGFETVCILIGVASAMVFFGLVDDA
Ga0209333_113971813300027676Forest SoilPMSWPVILSGVVCVTMLALGFNLLLPLGGGLEAVCVLIAVASAIVFFGLVDGA
Ga0209655_1018772213300027767Bog Forest SoilMSWPVILSGVVCVAMLALGFNLLLPLGSGFETVCVLIAVASAMVFFGLVDDA
Ga0209656_1007040123300027812Bog Forest SoilMSWPVISSGAVCVVMLALGFDLLLPLSSGLESVCILTGVASAMVFFGLVEGA
Ga0209656_1025565423300027812Bog Forest SoilMSWPMILSGAACVAMLALGFDLLLPLGSGLESVCVLTGVASAMVFFGLVE
Ga0209656_1036738113300027812Bog Forest SoilMSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLIAVACAMVFFGLADGA
Ga0209656_1046156913300027812Bog Forest SoilPVILSGAACVAMLALGFDLLLPLGSGLESVCVLTGVASAMVFFGLVEGA
Ga0209040_1044015313300027824Bog Forest SoilWPPPQLEVPMSWPVISSGAVCVVMLALGFDLLLPLSSGLESVCILTGVASAMVFFGLVEG
Ga0209693_1005541543300027855SoilMSWPVILSGVVCVAMLALGLNLLLPLGSGLETVCVLIAVASAMVFFGLVDGA
Ga0308309_1033026633300028906SoilVPMSWPVILSGVVCVTMLALGFNLLLPVGNGLETACVLIAVASAIVFFGLMDGA
Ga0265763_101131243300030763SoilMSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLIAVASAMVFFGLLDDA
Ga0265756_10779423300030805SoilMSWPVILSGVVFVAMLPLGFNLLLPLGSGFETVCVLIGVVSAMIFFGLVDDA
Ga0075404_1068589213300030842SoilALGFNLLLPLGSGFEAVCILIAVASAMVFFGLVDDA
Ga0075377_1169539123300030844SoilMSWPVILSGVVCVAMLALGFNLLLPLGSGLETACVFIAVASAMVFFGLVDDA
Ga0265765_104384313300030879SoilMSWPVILSGVVCVTTLALGFNLVLPLGSGFETVCILIAVASAMVFFGLVEGA
Ga0265758_10204533300030884SoilMSWPVILSGVVCVAMLALGFNLLLSLGSGFETVCTLIGVASAMIFFGLVEDA
Ga0265743_11128023300030885SoilMSWPVILSGVVCVAMLALGFNLLLPLGSGFETVCILIAVASPMVFFGLVDDA
Ga0265743_11499523300030885SoilMSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLIGVASAMAFFGLVDDA
Ga0265759_10161333300030913SoilMSRPVILSGVVCVTMLAVGFNLLLPLGSGLETVCVLIAVASAMVFFGLVDDA
Ga0075386_1185634123300030916SoilMNWPVILSGVVSVAALALGFNLLLPLGSGLEPVCVLTGVASAMVFF
Ga0075401_1194887623300030935SoilALGFNLLLPLGSGFEAMCILIAVASAMVFFGLLDDA
Ga0138301_165428623300031022SoilMSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLIAVASASFGLVDDE
Ga0170834_10626661823300031057Forest SoilMNGPAILSGVVCVAMLALGFNLLLPLGSGLDTVCVLTGVASAMVFF
Ga0170834_10806515723300031057Forest SoilMSRPVILSGVVCVAMLALGFNLLLPLGSGFETVCILIGVASAMIFFGLVDDA
Ga0170823_1500745523300031128Forest SoilMNGPAILSGVVCVAMLALGFNLLLPLGSGLETACVLTAVASAMVFFGVVDDA
Ga0170824_11751489023300031231Forest SoilMNGPAILSGVVCVAMLALGFNLLFPLGSGLDTVCVLTGVASAMVFFGLVEDV
Ga0170824_12297135223300031231Forest SoilMSWPVILSGVVCVTTLAMGFNLLLPLGSGLETVCVLIAVASAIVFFGLVDGA
Ga0170819_1549927413300031469Forest SoilMNWPVILSGVVSVAALALGFDLLLPLGSGLEPVCVLTGVASAMVFFGLVEGA
Ga0170819_1726449423300031469Forest SoilMSWPVILSGVVCVTTLAMGFNLLLPLGSGLETVCVLTAVASAIVFFGLVDGA
Ga0170818_10650854523300031474Forest SoilMNWPVILSGVVCLTMLALGFDLLLPLGSVLEPVCLLTGVASAMVFFGLVEGA
Ga0170818_10805032413300031474Forest SoilMCSLADTNWEVPMSGPAILSGLVCVAMLALGFNLLLPLGSGLDTVCVLTGVASAMVFFGLVDGA
Ga0310686_10279226213300031708SoilMSWPVILSGVVCVAMLALGFNLLLPLGSGLDTVCVLTGVASAMVFFGLVD
Ga0310686_11680826623300031708SoilGVVCVTMLALGFNLLLPLGSGLETVCVLIAVASAMVFFGLVEDA
Ga0307474_1058686423300031718Hardwood Forest SoilMSWPVILSGVVCVTMLALGFNLLLPLGSGLEAVCVLIAVASAMVFFGLVDDA
Ga0316053_10405113300032120SoilMSWPVILSGVVCVAMLALGFNLLLSLGSGFETVCTLIGVASAMMFFGLVDDA
Ga0311301_1003253973300032160Peatlands SoilMSWPVILSGVVCVTMLALGFNLLLPLGSGLETACVLIAVASAMVFFGLADGA
Ga0348332_1018008323300032515Plant LitterMSWPVILSGVVLVAMLALGFNLLLPLGSGFETVCVLIGVVSAMIFFGLVDDA
Ga0348332_1139801813300032515Plant LitterMSWPVILSGVVCVAMLALGFNLLLPLGSGFETVCILIGVSSAMIFFGLVDDA


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