Metagenome / Metatranscriptome Family F094231

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094231
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	53 residues
Representative Sequence	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHLNFLECA
Number of Associated Samples	94
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	8.49 %
% of genes near scaffold ends (potentially truncated)	26.42 %
% of genes from short scaffolds (< 2000 bps)	89.62 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (62.264 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (38.679 % of family members)
Environment Ontology (ENVO)	Unclassified (40.566 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.226 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.60% β-sheet: 7.55% Coil/Unstructured: 35.85%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00293	NUDIX	2.83
PF01258	zf-dskA_traR	1.89
PF00532	Peripla_BP_1	1.89
PF01526	DDE_Tnp_Tn3	1.89
PF02782	FGGY_C	0.94
PF01497	Peripla_BP_2	0.94
PF01073	3Beta_HSD	0.94
PF01152	Bac_globin	0.94
PF11638	DnaA_N	0.94
PF04851	ResIII	0.94
PF02899	Phage_int_SAM_1	0.94
PF13358	DDE_3	0.94
PF00589	Phage_integrase	0.94
PF00005	ABC_tran	0.94
PF07929	PRiA4_ORF3	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	1.89
COG4644	Transposase and inactivated derivatives, TnpA family	Mobilome: prophages, transposons [X]	1.89
COG0614	ABC-type Fe3+-hydroxamate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.94
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	0.94
COG4558	ABC-type hemin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.94
COG4592	ABC-type Fe2+-enterobactin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.94
COG4594	ABC-type Fe3+-citrate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.94
COG4607	ABC-type enterochelin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.94
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.94
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.26 %
All Organisms	root	All Organisms	37.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.26 %
cellular organisms	root	All Organisms → cellular organisms	37.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.26 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.26 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.66 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	4.72 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	4.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.77 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.26 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5.66 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	4.72 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4.72 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.26 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	4.72 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	4.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.94 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.26 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	4.72 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	4.72 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.94 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.94 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.26 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4.72 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	4.72 %
Komagataeibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter	0.94 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.94 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.26 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	4.72 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4.72 %
Komagataeibacter europaeus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter europaeus	0.94 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.94 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.26 %
Rubrobacter radiotolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	4.72 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4.72 %
Komagataeibacter europaeus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter europaeus	0.94 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.94 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459006\|GBPF9FW01DLUY3	Not Available	506	Open in IMG/M
2170459013\|GO6OHWN01ADK21	Not Available	546	Open in IMG/M
3300001593\|JGI12635J15846_10122487	All Organisms → cellular organisms → Bacteria	1835	Open in IMG/M
3300001593\|JGI12635J15846_10695983	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300001867\|JGI12627J18819_10227854	Not Available	750	Open in IMG/M
3300002906\|JGI25614J43888_10083371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	881	Open in IMG/M
3300002914\|JGI25617J43924_10184278	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	696	Open in IMG/M
3300003218\|JGI26339J46600_10082706	Not Available	807	Open in IMG/M
3300003219\|JGI26341J46601_10005875	All Organisms → cellular organisms → Bacteria	4027	Open in IMG/M
3300003219\|JGI26341J46601_10032098	All Organisms → cellular organisms → Bacteria	1701	Open in IMG/M
3300003368\|JGI26340J50214_10014931	All Organisms → cellular organisms → Bacteria	2428	Open in IMG/M
3300005178\|Ga0066688_10484470	Not Available	798	Open in IMG/M
3300005187\|Ga0066675_11011150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	624	Open in IMG/M
3300005439\|Ga0070711_101925092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	520	Open in IMG/M
3300005445\|Ga0070708_100790850	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300005447\|Ga0066689_10980855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	520	Open in IMG/M
3300005518\|Ga0070699_100730106	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300005554\|Ga0066661_10789091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	556	Open in IMG/M
3300005559\|Ga0066700_10610579	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300005569\|Ga0066705_10968684	Not Available	504	Open in IMG/M
3300005921\|Ga0070766_10801464	Not Available	642	Open in IMG/M
3300006174\|Ga0075014_100712322	Not Available	585	Open in IMG/M
3300006176\|Ga0070765_100446739	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300006797\|Ga0066659_11581650	Not Available	550	Open in IMG/M
3300006797\|Ga0066659_11863824	Not Available	510	Open in IMG/M
3300006893\|Ga0073928_10760549	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300007255\|Ga0099791_10077501	All Organisms → cellular organisms → Bacteria	1513	Open in IMG/M
3300009012\|Ga0066710_103034040	Not Available	652	Open in IMG/M
3300009038\|Ga0099829_10507786	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300009090\|Ga0099827_10309025	Not Available	1339	Open in IMG/M
3300009101\|Ga0105247_10900015	Not Available	683	Open in IMG/M
3300009683\|Ga0116224_10368374	Not Available	683	Open in IMG/M
3300010154\|Ga0127503_11092243	Not Available	629	Open in IMG/M
3300010159\|Ga0099796_10175849	Not Available	856	Open in IMG/M
3300010341\|Ga0074045_11071535	Not Available	504	Open in IMG/M
3300010343\|Ga0074044_10797241	Not Available	617	Open in IMG/M
3300011269\|Ga0137392_10069886	All Organisms → cellular organisms → Bacteria	2698	Open in IMG/M
3300011271\|Ga0137393_10876308	Not Available	766	Open in IMG/M
3300012181\|Ga0153922_1007678	All Organisms → cellular organisms → Bacteria	2708	Open in IMG/M
3300012199\|Ga0137383_10119437	All Organisms → cellular organisms → Bacteria	1922	Open in IMG/M
3300012200\|Ga0137382_10282005	Not Available	1156	Open in IMG/M
3300012202\|Ga0137363_10998284	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	711	Open in IMG/M
3300012202\|Ga0137363_11407964	Not Available	587	Open in IMG/M
3300012203\|Ga0137399_11072847	Not Available	678	Open in IMG/M
3300012205\|Ga0137362_10244480	Not Available	1550	Open in IMG/M
3300012207\|Ga0137381_11039516	Not Available	706	Open in IMG/M
3300012208\|Ga0137376_10751564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	840	Open in IMG/M
3300012361\|Ga0137360_10127587	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1987	Open in IMG/M
3300012362\|Ga0137361_10295988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1480	Open in IMG/M
3300012362\|Ga0137361_11219538	Not Available	675	Open in IMG/M
3300012372\|Ga0134037_1101085	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	661	Open in IMG/M
3300012582\|Ga0137358_10142192	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1632	Open in IMG/M
3300012683\|Ga0137398_10468797	All Organisms → cellular organisms → Bacteria → Proteobacteria	863	Open in IMG/M
3300012683\|Ga0137398_10648992	Not Available	732	Open in IMG/M
3300012685\|Ga0137397_10594782	Not Available	823	Open in IMG/M
3300012685\|Ga0137397_11145853	Not Available	563	Open in IMG/M
3300012922\|Ga0137394_10297410	Not Available	1380	Open in IMG/M
3300012923\|Ga0137359_11427177	Not Available	580	Open in IMG/M
3300012924\|Ga0137413_10816283	Not Available	718	Open in IMG/M
3300012924\|Ga0137413_11408074	Not Available	563	Open in IMG/M
3300012925\|Ga0137419_10954495	Not Available	708	Open in IMG/M
3300012925\|Ga0137419_11268028	Not Available	619	Open in IMG/M
3300012927\|Ga0137416_10390167	Not Available	1177	Open in IMG/M
3300012929\|Ga0137404_11873954	Not Available	558	Open in IMG/M
3300012930\|Ga0137407_11075130	Not Available	762	Open in IMG/M
3300015051\|Ga0137414_1232223	Not Available	2384	Open in IMG/M
3300015241\|Ga0137418_10380701	Not Available	1156	Open in IMG/M
3300015264\|Ga0137403_10019010	All Organisms → cellular organisms → Bacteria → Proteobacteria	7400	Open in IMG/M
3300019881\|Ga0193707_1197331	Not Available	517	Open in IMG/M
3300020199\|Ga0179592_10244502	Not Available	807	Open in IMG/M
3300020583\|Ga0210401_10581452	Not Available	982	Open in IMG/M
3300021046\|Ga0215015_10290860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Komagataeibacter → Komagataeibacter europaeus	1124	Open in IMG/M
3300021086\|Ga0179596_10576524	Not Available	571	Open in IMG/M
3300021168\|Ga0210406_10605515	Not Available	855	Open in IMG/M
3300021168\|Ga0210406_10613539	Not Available	848	Open in IMG/M
3300021171\|Ga0210405_10556099	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	896	Open in IMG/M
3300021178\|Ga0210408_10742602	Not Available	771	Open in IMG/M
3300021405\|Ga0210387_10446360	Not Available	1148	Open in IMG/M
3300021420\|Ga0210394_11427493	Not Available	588	Open in IMG/M
3300021479\|Ga0210410_10503369	Not Available	1082	Open in IMG/M
3300023056\|Ga0233357_1018180	Not Available	821	Open in IMG/M
3300024288\|Ga0179589_10316065	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	705	Open in IMG/M
3300025898\|Ga0207692_10082393	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1724	Open in IMG/M
3300025910\|Ga0207684_10092994	Not Available	2571	Open in IMG/M
3300025916\|Ga0207663_10235744	Not Available	1339	Open in IMG/M
3300026304\|Ga0209240_1000183	All Organisms → cellular organisms → Bacteria	25352	Open in IMG/M
3300026319\|Ga0209647_1128271	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1140	Open in IMG/M
3300026369\|Ga0257152_1023648	Not Available	658	Open in IMG/M
3300026475\|Ga0257147_1016912	Not Available	1003	Open in IMG/M
3300026498\|Ga0257156_1002667	All Organisms → cellular organisms → Bacteria	3267	Open in IMG/M
3300026551\|Ga0209648_10406113	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	888	Open in IMG/M
3300026551\|Ga0209648_10788413	Not Available	519	Open in IMG/M
3300026557\|Ga0179587_10133197	Not Available	1537	Open in IMG/M
3300027610\|Ga0209528_1031487	Not Available	1173	Open in IMG/M
3300027635\|Ga0209625_1107134	Not Available	627	Open in IMG/M
3300027674\|Ga0209118_1086402	Not Available	895	Open in IMG/M
3300027727\|Ga0209328_10017032	All Organisms → cellular organisms → Bacteria	2208	Open in IMG/M
3300027812\|Ga0209656_10006099	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	7741	Open in IMG/M
3300027846\|Ga0209180_10642754	Not Available	582	Open in IMG/M
3300027882\|Ga0209590_10313630	Not Available	1008	Open in IMG/M
3300028536\|Ga0137415_10272943	All Organisms → cellular organisms → Bacteria	1497	Open in IMG/M
3300031128\|Ga0170823_16904549	Not Available	1570	Open in IMG/M
3300031753\|Ga0307477_11151923	Not Available	505	Open in IMG/M
3300031754\|Ga0307475_10254284	Not Available	1408	Open in IMG/M
3300031754\|Ga0307475_10597937	Not Available	883	Open in IMG/M
3300032180\|Ga0307471_102714881	Not Available	628	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.11%
Host-Associated	Host-Associated	1.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.57%
Aquatic	Environmental → Aquatic	7.55%
Plants	Host-Associated → Plants	0.94%
Fungi	Host-Associated → Fungi	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.57%
Freshwater	Environmental → Aquatic → Freshwater	5.66%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.94%
Sediment	Environmental → Aquatic → Sediment	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.94%
Mycelium	Host-Associated → Fungi → Mycelium	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.53%
Loam	Environmental → Terrestrial → Soil → Loam	14.15%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.72%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.89%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.94%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.94%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.04%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.49%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.66%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.72%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.94%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	38.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.55%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.66%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.89%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.94%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012372	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300023056	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026369	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-A	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L01_00995260	2170459006	Grass Soil	METKLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIQLKSWEC
N57_07703390	2170459013	Grass Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERP
JGI12635J15846_101224872	3300001593	Forest Soil	METQLVYLSIPQGTLEKLEIVAAQXGLAVEQVVQEAIDEFLERPIHLNSWECA*
JGI12635J15846_106959832	3300001593	Forest Soil	MQTQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHMNFWEYA*
JGI12627J18819_102278543	3300001867	Forest Soil	METQLVYLSIPQGTLEKLEIVSAQKGLAVEQVVQEAIDEFLERPIHLESWEFA*
JGI25614J43888_100833711	3300002906	Grasslands Soil	METQLVCLSMPQGTLERLEIVAAQKGLAVEQVVQEAIDEFLERPMHLNFLECA*
JGI25617J43924_101842781	3300002914	Grasslands Soil	LVCLSMPQGTLERLEIVAAQKGLAVEQVVQEAIDEFLERPMHLNFLECA*
JGI26339J46600_100827061	3300003218	Bog Forest Soil	MXTQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQQAIDEFLERPIHLDFLECA*
JGI26341J46601_100058756	3300003219	Bog Forest Soil	METQLIYLSIPQGTLEKLEIVAAQKGLAVEQVVQELIDDFLEPPIHLNFLKCA*
JGI26341J46601_100320981	3300003219	Bog Forest Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQQAIDEFLERPIHLDFLE
JGI26340J50214_100149312	3300003368	Bog Forest Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQQAIDEFLERPIHLDFLECA*
Ga0066688_104844702	3300005178	Soil	METQLIYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLEPPIHLNFLKCA*
Ga0066675_110111501	3300005187	Soil	METQLVYLSIPQGTLEKLEIVSAQKGLAVEQVVQEAIDEFLERPIHLN
Ga0070711_1019250921	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	LLKSDSFKLDAAMETQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHMNFWEYA*
Ga0070708_1007908503	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	METQLVYLSMPQGTLERLETVAAQKGLAVEQVVQEAIDEFLERLIRLNFLKCA*
Ga0066689_109808551	3300005447	Soil	KLDAAMETQLIYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLEPPIHLNFLKCA*
Ga0070699_1007301061	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VETQLIYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLEPPIHLNF*
Ga0066661_107890911	3300005554	Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLEPPIHLNFLKCA*
Ga0066700_106105792	3300005559	Soil	METQLVYLSIPQGTLEKLEIVSAQKGLAVEQVVQEAIGEFLERSIHMNSWEFA*
Ga0066705_109686841	3300005569	Soil	NSDSFKLDAAMETQLIYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDAFLEPPIHLNVLKCA*
Ga0070766_108014641	3300005921	Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHLNSWECA*
Ga0075014_1007123222	3300006174	Watersheds	METQLVYLSILQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHLNVLKCA*
Ga0070765_1004467392	3300006176	Soil	LLKSDSFKLDAAMQTQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHLNSWKCA*
Ga0066659_115816501	3300006797	Soil	METQLVYLSIPQGTLEKLEIVSAQKGLAVEQVVQEAIGEFLER
Ga0066659_118638242	3300006797	Soil	METQLIYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIGEFLERPIHPNFLECA*
Ga0073928_107605492	3300006893	Iron-Sulfur Acid Spring	METQLVYLSIPQGTLEKMEIVAVQKGLAVEQGFKAIDEFLELSIPVK
Ga0099791_100775013	3300007255	Vadose Zone Soil	METQLIYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHMNFWEYA*
Ga0066710_1030340401	3300009012	Grasslands Soil	METQLVYLSIPQGTLEKLEIVSAQKGLAVEQVVQEAIDEFLERPIHLDFVASG
Ga0099829_105077863	3300009038	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQQAIDEFLERPIDLDFLECA*
Ga0099827_103090251	3300009090	Vadose Zone Soil	METQLVYLSIPQGTLDKLEIVAAQKGLAVEQVVQQAIDEFLERPIHLDFLECA*
Ga0105247_109000151	3300009101	Switchgrass Rhizosphere	METQLVYLSIPQGTLEKLEIVAAQKRLAVEQVVQEAIDEFLERPIHQNSWKCA*
Ga0116224_103683741	3300009683	Peatlands Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQQAIDEFLERPIHLNFLKCA*
Ga0127503_110922432	3300010154	Soil	LIYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLEPPIHLNFLKCA*
Ga0099796_101758492	3300010159	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHMNIWEYA*
Ga0074045_110715351	3300010341	Bog Forest Soil	TQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQQAIDEFLERPIHLDFLECA*
Ga0074044_107972411	3300010343	Bog Forest Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHLNVLKCA*
Ga0137392_100698862	3300011269	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIVAAQKGFAVEQVVQEAIDEFLERPIHLNSWECA*
Ga0137393_108763081	3300011271	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIVAVQKGLAVEQVVQEAIDEFLERPIHLNCFECA*
Ga0153922_10076781	3300012181	Attine Ant Fungus Gardens	METQLVYLSIPQGTLEKLEIVAAQKGFAVEQVVQEAIDEFLERPIH
Ga0137383_101194372	3300012199	Vadose Zone Soil	METQLVYLSIPQGTLKKLEIVAAQKGLAVEQVVQEAIDEFLEPPIHLNFLKCT*
Ga0137382_102820052	3300012200	Vadose Zone Soil	METQLVYLSIPQGILEELEIVAAQKGLAVEQVVQEPIDEFLERPIHLNFLECA*
Ga0137363_109982841	3300012202	Vadose Zone Soil	AAMETQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLEPPIHLNVLKCA*
Ga0137363_114079642	3300012202	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHL
Ga0137399_110728472	3300012203	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEPIDEFLERPIHLNFLECA*
Ga0137362_102444803	3300012205	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIAAAQKGLAVEQVVQEAIDEFLERPIQLKSLECA*
Ga0137381_110395161	3300012207	Vadose Zone Soil	METQLIYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLEPPIHLNFLKCT*
Ga0137376_107515642	3300012208	Vadose Zone Soil	METQLVYLSIPQGTLEKLEILAAQKGLAVEQVVQEPIDEFLER
Ga0137360_101275871	3300012361	Vadose Zone Soil	METQLIYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLEPPIHLNVLKCA*
Ga0137361_102959881	3300012362	Vadose Zone Soil	DSFKLDAAMETQLIYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLEPPIHLNVLKCA*
Ga0137361_112195382	3300012362	Vadose Zone Soil	METQLVYLSMPQGTLEKLEIVAAQKGLAVEQVVQEAIGEFLERPIHPNFLECA*
Ga0134037_11010851	3300012372	Grasslands Soil	METQLIYLSIPQGTLEKLEIVAGQTGLALEQVVQEAIDEFLDRPIMNCFECA*
Ga0137358_101421921	3300012582	Vadose Zone Soil	METQLIYLSIPQGTLEKLEIFAAQKGLAVEQVVQEAIDEFLDRPIHMNFWEYA*
Ga0137398_104687972	3300012683	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHLNSWEYA*
Ga0137398_106489921	3300012683	Vadose Zone Soil	ITFTNEPDSFKLDAAMETQLVCLSMPQGTLERLEIVAAQKGLAVEQVVQEAIDEFLERPIHLNSWECA*
Ga0137397_105947821	3300012685	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIATAQKGLAVEQVVQEAIDEFLERPIHLNIWEYA*
Ga0137397_111458532	3300012685	Vadose Zone Soil	METQLVYVSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLER
Ga0137394_102974102	3300012922	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIVAAKNGLAVEQVVQEAIDEFLERPIHLNSWECA*
Ga0137359_114271771	3300012923	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIVAVQKGLAVEQVVQEAIDEFLDRPIHMNFWEYA*
Ga0137413_108162831	3300012924	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHLNFLECA*
Ga0137413_114080741	3300012924	Vadose Zone Soil	KLDAAMETQLVYLSIPQGTLEKLEIVAAKKGLAVEQVVQEAIDEFLERPIHLNSWECA*
Ga0137419_109544951	3300012925	Vadose Zone Soil	LLKSDSFKLDAAMETQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHLNCFECA*
Ga0137419_112680281	3300012925	Vadose Zone Soil	METQLIYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFSERPIHLNIWEYA*
Ga0137416_103901672	3300012927	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIVAVQKGLAVEQVVQEAIDEFLERPIHLNFLECA*
Ga0137404_118739541	3300012929	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLEPPIHLNVLKCA*
Ga0137407_110751301	3300012930	Vadose Zone Soil	AMETQLVYLSIPQGTLEKLEIAAAQKGLAVEQVVQEAIDEFLERPIQLKSLECA*
Ga0137414_12322233	3300015051	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHMNFWEYA*
Ga0137418_103807011	3300015241	Vadose Zone Soil	METQLIYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHLNSWECA*
Ga0137403_100190107	3300015264	Vadose Zone Soil	METQLIYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHLNFLECA*
Ga0193707_11973311	3300019881	Soil	LLKSDSFKLDAAMETQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHLNSWKCA
Ga0179592_102445022	3300020199	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHLNIWEYA
Ga0210401_105814522	3300020583	Soil	METQLVYLSIPQGSLEKLEIVAAKKGLAVEQVIQEAIDEFLERPIHLNSWECA
Ga0215015_102908601	3300021046	Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQQAIDEFLERPIHLDFLECA
Ga0179596_105765242	3300021086	Vadose Zone Soil	METRLVNLSIPQGTLEKLEIVAAQKGLALEQVVQEAIDEFLERPIHLNCFECA
Ga0210406_106055151	3300021168	Soil	NSGSFKLDAAMETQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHMNFWEYA
Ga0210406_106135391	3300021168	Soil	METQLVYLSIPQGTLENLEIVAAQKGLAVEQVVQEAIDEFLERPIHLNSWECA
Ga0210405_105560992	3300021171	Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHMNFWECA
Ga0210408_107426022	3300021178	Soil	METQLVHLSIPQETLEKLEIVAAQKGLSVEQVVQEAIDEFLERPYVSTRLVFAR
Ga0210387_104463602	3300021405	Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHMNFREYA
Ga0210394_114274932	3300021420	Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHLDFLECA
Ga0210410_105033692	3300021479	Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHM
Ga0233357_10181801	3300023056	Soil	METQLVYLSIPQGTLEKLEIVAAQKRIAVEQVVQEAIEEFLERPIHLKSWECA
Ga0179589_103160651	3300024288	Vadose Zone Soil	TNEPDSFKLDAAMETQLVCLSMPQGTLERLEFVAAQKGLAVEQLVQEAIDEFLERPMHLNFLECA
Ga0207692_100823933	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHMNFWEYA
Ga0207684_100929943	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	METQLVYLSMPQGTLERLETVAAQKGLAVEQVVQEAIDEFLERLIRLNFLKCA
Ga0207663_102357442	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	METQLVYLSIPQGTLEKLKIVAAQKGLAVEQVVQEAIDEFLERPIQLKSWECA
Ga0209240_100018328	3300026304	Grasslands Soil	METQLVCLSMPQGTLERLEIVAAQKGLAVEQVVQEAIDEFLERPMHLNFLECA
Ga0209647_11282712	3300026319	Grasslands Soil	METQLVYLSIPQGTLEKLEIVAAQKKLAVEQVVQEPIDEFLERPIHLNFLECA
Ga0257152_10236482	3300026369	Soil	METQLVYLSIPQGSLEKLEIVAAKKRLAVEQVIQEAIDEFLERPIHLNSWECA
Ga0257147_10169121	3300026475	Soil	METQLVYLSIPQGTLEKLEIVAAKKGLAVEQVVQEAIDEFLERPIHLNSWECA
Ga0257156_10026675	3300026498	Soil	METQLVYLSMPQGTLEKLEIVAAQKGLAVEQVVQEAIGEFLERPIHPNFLECA
Ga0209648_104061132	3300026551	Grasslands Soil	METQLVYLSIPQETLEKLEIVAAQTGLALEQVVQEAIDEFLERPIHLNCFECA
Ga0209648_107884132	3300026551	Grasslands Soil	METQLIYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLEPPIHLNVLKCA
Ga0179587_101331971	3300026557	Vadose Zone Soil	METQLVYLSIPQETLEKLEIVAAQKGLAVEQVVQEVIDEFLERPIHLNSWECA
Ga0209528_10314873	3300027610	Forest Soil	SIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHLDFLECA
Ga0209625_11071341	3300027635	Forest Soil	SFKHDAAMETQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHMNFWEYA
Ga0209118_10864022	3300027674	Forest Soil	LLKSDSFKLDAAMQTQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDELLERPIHLNSWKCA
Ga0209328_100170324	3300027727	Forest Soil	METQLVYLSIPQGTLEKLEIVAAQKGFAVEQVVQEAIDEFLERPIHLNSWECA
Ga0209656_100060994	3300027812	Bog Forest Soil	METQLIYLSIPQGTLEKLEIVAAQKGLAVEQVVQELIDDFLEPPIHLNFLKCA
Ga0209180_106427542	3300027846	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQQAIDEFLERPIHLNCFECA
Ga0209590_103136301	3300027882	Vadose Zone Soil	METQLVYLSIPQGTLDKLEIVAAQKGLAVEQVVQQAIDEFLERPIHLDFLECA
Ga0137415_102729431	3300028536	Vadose Zone Soil	METQLVYLSIPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHLNFLECA
Ga0170823_169045493	3300031128	Forest Soil	VYLSIPQGTLEKLEIIAAQKGIAVEQVVQEAIDECLERPIHLKFLKCA
Ga0307477_111519231	3300031753	Hardwood Forest Soil	DSFKLDAAMETQLVYLSLPQGTLEKLEIVAAQKGLAVEQVVQEAIDEFLERPIHLNVLEC
Ga0307475_102542841	3300031754	Hardwood Forest Soil	METQLVYLSIPQGTLEKLEIAAAQKGLAVEQVVQQAIDEFLERPIHLDFLECA
Ga0307475_105979372	3300031754	Hardwood Forest Soil	METQLVYLSIPQGTLEKLEIVSAQKGLAVEQVVQEAIDEFLERPIHLESWEFA
Ga0307471_1027148811	3300032180	Hardwood Forest Soil	METQLVYLSIPQGTLEKLEIAAAQKGLAVEQVVQEAIDEFLERPIQLKSLECA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094231

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences