Metagenome Family F094209

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094209
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	52 residues
Representative Sequence	MTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT
Number of Associated Samples	91
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	31.63 %
% of genes near scaffold ends (potentially truncated)	40.57 %
% of genes from short scaffolds (< 2000 bps)	74.53 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.075 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (13.207 % of family members)
Environment Ontology (ENVO)	Unclassified (28.302 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.566 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.95% β-sheet: 0.00% Coil/Unstructured: 48.05%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13378	MR_MLE_C	41.51
PF07690	MFS_1	21.70
PF00440	TetR_N	5.66
PF02738	MoCoBD_1	1.89
PF08241	Methyltransf_11	0.94
PF02803	Thiolase_C	0.94
PF04412	AcnX	0.94
PF13531	SBP_bac_11	0.94
PF04392	ABC_sub_bind	0.94
PF00857	Isochorismatase	0.94
PF03707	MHYT	0.94
PF00108	Thiolase_N	0.94
PF00990	GGDEF	0.94
PF00941	FAD_binding_5	0.94
PF00005	ABC_tran	0.94
PF00528	BPD_transp_1	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	1.89
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.94
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.94
COG1679	Mevalonate 5-phosphate dehydratase subunit 1, aconitase superfamily (modified mevalonate pathway)	Lipid transport and metabolism [I]	0.94
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.94
COG3300	MHYT domain, NO-binding membrane sensor	Signal transduction mechanisms [T]	0.94
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.08 %
Unclassified	root	N/A	17.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.08 %
Unclassified	root	N/A	17.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.08 %
Unclassified	root	N/A	17.92 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	78.30 %
Unclassified	root	N/A	17.92 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	66.04 %
Unclassified	root	N/A	17.92 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	10.38 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.94 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.75 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	19.81 %
Unclassified	root	N/A	17.92 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	10.38 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	19.81 %
Unclassified	root	N/A	17.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	10.38 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.49 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.89 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.94 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	19.81 %
Unclassified	root	N/A	17.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	10.38 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.89 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	1.89 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.94 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	19.81 %
Unclassified	root	N/A	17.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	10.38 %
unclassified Methylocystis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis	1.89 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.89 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.94 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	19.81 %
Unclassified	root	N/A	17.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	10.38 %
Methylocystis sp. H62	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. H62	1.89 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.89 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.94 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886013\|SwBSRL2_contig_1772882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1132	Open in IMG/M
2199352025\|deepsgr__Contig_1594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16278	Open in IMG/M
2209111006\|2214888020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	570	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1000661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5276	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1005927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1269	Open in IMG/M
3300004479\|Ga0062595_100037783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2072	Open in IMG/M
3300004633\|Ga0066395_10446462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	737	Open in IMG/M
3300004643\|Ga0062591_101025494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	787	Open in IMG/M
3300005160\|Ga0066820_1009240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	636	Open in IMG/M
3300005165\|Ga0066869_10007602	Not Available	1405	Open in IMG/M
3300005277\|Ga0065716_1011350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	629	Open in IMG/M
3300005332\|Ga0066388_100065124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3905	Open in IMG/M
3300005332\|Ga0066388_100073189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3747	Open in IMG/M
3300005332\|Ga0066388_100276174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2323	Open in IMG/M
3300005332\|Ga0066388_100695756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1624	Open in IMG/M
3300005332\|Ga0066388_101632981	Not Available	1136	Open in IMG/M
3300005332\|Ga0066388_102066642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1024	Open in IMG/M
3300005332\|Ga0066388_102331256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	969	Open in IMG/M
3300005332\|Ga0066388_105245772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300005334\|Ga0068869_100143718	All Organisms → cellular organisms → Bacteria → Proteobacteria	1845	Open in IMG/M
3300005354\|Ga0070675_100831358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	845	Open in IMG/M
3300005435\|Ga0070714_101770922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	603	Open in IMG/M
3300005436\|Ga0070713_100003697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10128	Open in IMG/M
3300005455\|Ga0070663_100787549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	814	Open in IMG/M
3300005455\|Ga0070663_101055657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	708	Open in IMG/M
3300005545\|Ga0070695_101567190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	549	Open in IMG/M
3300005546\|Ga0070696_100126886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1852	Open in IMG/M
3300005548\|Ga0070665_102539684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300005616\|Ga0068852_101607672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	672	Open in IMG/M
3300005713\|Ga0066905_100191516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1519	Open in IMG/M
3300005719\|Ga0068861_100211602	Not Available	1633	Open in IMG/M
3300005764\|Ga0066903_100059326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4764	Open in IMG/M
3300005764\|Ga0066903_101602330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1235	Open in IMG/M
3300005764\|Ga0066903_108050187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M
3300006057\|Ga0075026_100409618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	764	Open in IMG/M
3300006175\|Ga0070712_100441923	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300006844\|Ga0075428_100302114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1721	Open in IMG/M
3300006854\|Ga0075425_101499719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	761	Open in IMG/M
3300006904\|Ga0075424_100046632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4520	Open in IMG/M
3300006904\|Ga0075424_100562085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1218	Open in IMG/M
3300006914\|Ga0075436_100517729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	874	Open in IMG/M
3300007076\|Ga0075435_101513174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	588	Open in IMG/M
3300009792\|Ga0126374_10408137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	952	Open in IMG/M
3300010043\|Ga0126380_10027733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2819	Open in IMG/M
3300010043\|Ga0126380_10496727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	935	Open in IMG/M
3300010043\|Ga0126380_11126330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	671	Open in IMG/M
3300010046\|Ga0126384_10254490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1421	Open in IMG/M
3300010360\|Ga0126372_12899398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531	Open in IMG/M
3300010362\|Ga0126377_10296846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1592	Open in IMG/M
3300010366\|Ga0126379_12950565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	569	Open in IMG/M
3300010398\|Ga0126383_10405327	Not Available	1401	Open in IMG/M
3300010401\|Ga0134121_11033909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	809	Open in IMG/M
3300011244\|Ga0137483_100010	All Organisms → cellular organisms → Bacteria	233958	Open in IMG/M
3300012685\|Ga0137397_10487332	All Organisms → cellular organisms → Bacteria	919	Open in IMG/M
3300012944\|Ga0137410_11844304	Not Available	535	Open in IMG/M
3300012955\|Ga0164298_10030595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2414	Open in IMG/M
3300012957\|Ga0164303_11245711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	547	Open in IMG/M
3300012985\|Ga0164308_10738505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	852	Open in IMG/M
3300012989\|Ga0164305_10418334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1032	Open in IMG/M
3300013297\|Ga0157378_10157846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2119	Open in IMG/M
3300014325\|Ga0163163_11380146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	766	Open in IMG/M
3300015373\|Ga0132257_102275843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	702	Open in IMG/M
3300015374\|Ga0132255_101075107	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1209	Open in IMG/M
3300018067\|Ga0184611_1239776	Not Available	643	Open in IMG/M
3300018433\|Ga0066667_10873545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	771	Open in IMG/M
3300020581\|Ga0210399_10410523	Not Available	1129	Open in IMG/M
3300021560\|Ga0126371_10099934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2888	Open in IMG/M
3300023058\|Ga0193714_1045385	Not Available	636	Open in IMG/M
3300025900\|Ga0207710_10478811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	645	Open in IMG/M
3300025911\|Ga0207654_10062736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2179	Open in IMG/M
3300025942\|Ga0207689_10008575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8908	Open in IMG/M
3300025944\|Ga0207661_11479798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	622	Open in IMG/M
3300026067\|Ga0207678_11886578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	522	Open in IMG/M
3300026142\|Ga0207698_10703497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. H62	1006	Open in IMG/M
3300026805\|Ga0207507_103299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	589	Open in IMG/M
3300027288\|Ga0208525_1019384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	785	Open in IMG/M
3300027907\|Ga0207428_10463617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	923	Open in IMG/M
3300027907\|Ga0207428_11305741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	503	Open in IMG/M
3300028819\|Ga0307296_10023076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3281	Open in IMG/M
3300028828\|Ga0307312_10352217	Not Available	963	Open in IMG/M
3300031543\|Ga0318516_10603961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	626	Open in IMG/M
3300031545\|Ga0318541_10288733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. H62	913	Open in IMG/M
3300031572\|Ga0318515_10099560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1523	Open in IMG/M
3300031573\|Ga0310915_10002498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9745	Open in IMG/M
3300031720\|Ga0307469_12003037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	562	Open in IMG/M
3300031724\|Ga0318500_10091965	Not Available	1367	Open in IMG/M
3300031736\|Ga0318501_10054889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1877	Open in IMG/M
3300031740\|Ga0307468_100224170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1296	Open in IMG/M
3300031779\|Ga0318566_10519375	All Organisms → cellular organisms → Bacteria → Proteobacteria	583	Open in IMG/M
3300031798\|Ga0318523_10069251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1692	Open in IMG/M
3300031859\|Ga0318527_10129151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1051	Open in IMG/M
3300031892\|Ga0310893_10007859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2816	Open in IMG/M
3300031908\|Ga0310900_11516226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	565	Open in IMG/M
3300032179\|Ga0310889_10151183	Not Available	1039	Open in IMG/M
3300032180\|Ga0307471_101257502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	903	Open in IMG/M
3300034129\|Ga0370493_0168337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	724	Open in IMG/M
3300034157\|Ga0370506_060727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	807	Open in IMG/M
3300034820\|Ga0373959_0016542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1368	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.64%
Host-Associated	Host-Associated	27.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.75%
Plants	Host-Associated → Plants	27.36%
Aquatic	Environmental → Aquatic	1.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.38%
Sediment	Environmental → Aquatic → Sediment	1.89%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.06%
Loam	Environmental → Terrestrial → Soil → Loam	19.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.38%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.60%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.47%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.66%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.38%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.43%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
2209111006	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005160	Soil and rhizosphere microbial communities from Laval, Canada - mgLMB	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005277	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011244	Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 18 - S13.2.60.3.a - transect 2, repeat 3, age 113 years, surface depth)	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300023058	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026805	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-A (SPAdes)	Environmental	Open in IMG/M
3300026995	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)	Environmental	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034129	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_16	Environmental	Open in IMG/M
3300034157	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_18	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0687.00000330	2162886013	Switchgrass Rhizosphere	MNRVNPMTEPSPARTPYLLLWSTGIAALILSMAAFALWGTTGTRALFDMIVALCT
deepsgr_02654910	2199352025	Soil	MTEPSSTNTTPYLLLWSTGVVAFVLCMAAFVLWGTTGMRTLFDMIVALCG
2213941898	2209111006	Arabidopsis Rhizosphere	MTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIV
AF_2010_repII_A01DRAFT_10006616	3300000580	Forest Soil	MNRVSPMTEPSPARTPYLLLWSTGIAALILSMAAFALWGTTGTRALFDMIVALCT*
AF_2010_repII_A10DRAFT_10059272	3300000816	Forest Soil	MNRVNPMTEPSPVRTPYLLLWSTGIAALILSMAAFALWGTTGTRALFDMIVALCT*
Ga0062595_1000377832	3300004479	Soil	MNRVNPMTEPSPARTPYLLLWSTGIAALILSMAAFALWGTTGTRALFDMIVALCT*
Ga0066395_104464622	3300004633	Tropical Forest Soil	MTEPSPARTPYLLLWSTGIAALILSMAAFALWGTTGTRALFDMIVALCT*
Ga0062591_1010254942	3300004643	Soil	MNRVSPMTEPSPARTPYLLLWSTGIAALVLSMTAFALWGTTGARTLFDMIVALCT*
Ga0066820_10092402	3300005160	Soil	MTEPSSARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0066869_100076021	3300005165	Soil	SPMTEPSSARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0065716_10113501	3300005277	Arabidopsis Rhizosphere	MTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0066388_1000651244	3300005332	Tropical Forest Soil	MTEPSRADTPYLLLWSIGVLAFVLCTVAFVLWGITGTRTLFDMMIALCT*
Ga0066388_1000731894	3300005332	Tropical Forest Soil	MTEPSPARTPYLLLWSTGITALILSMAAFALWGATGTRALFDVIVALCT*
Ga0066388_1002761743	3300005332	Tropical Forest Soil	MTEQSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0066388_1006957562	3300005332	Tropical Forest Soil	MTEPSSVRTPHLLLWSTGIAALILSMAAFALWGTTGTRALFDMIVALCT*
Ga0066388_1016329811	3300005332	Tropical Forest Soil	YLLLWSTGIAALILSMAAFALWGTTGTRALFDMIVALCT*
Ga0066388_1020666422	3300005332	Tropical Forest Soil	MSEPSSARTPYLLLWSTGIAALILSMAAFALWGTTGTRALFDMIVALCT*
Ga0066388_1023312561	3300005332	Tropical Forest Soil	MNRVNPMTEPSPVRTPYLLLWSTGIAALILSMAAFALWGTTGTRALFDMIVAL
Ga0066388_1052457721	3300005332	Tropical Forest Soil	MTEPSPARTPYLLLWSTGIAALILSMAAFALWGTTGTRALFDMIVALCT
Ga0068869_1001437182	3300005334	Miscanthus Rhizosphere	MTEPSTARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0070675_1008313582	3300005354	Miscanthus Rhizosphere	MNRVNPMTEPSPARTPYLLLWSTGIAALILSMVAFALWGTTGTRALFDMIVALCT*
Ga0070714_1017709222	3300005435	Agricultural Soil	ARTPYLLLWSTGIAALILSMAAFALWGTTGTRALFDMIVALCT*
Ga0070713_10000369713	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	TPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0070705_1004826832	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	AKSRYRVSRRQQHLHSWRRHMNRVSPMTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0070663_1007875491	3300005455	Corn Rhizosphere	MTEPSSARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIV
Ga0070663_1010556572	3300005455	Corn Rhizosphere	MNRVSPMTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0070695_1015671902	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	ARTPYLLLWSTGIAALVLSMAALALWGTTGARTLFDMIVALCT*
Ga0070696_1001268863	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	EPSSARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0070665_1025396842	3300005548	Switchgrass Rhizosphere	MNRVSPMTEPSTARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0068852_1016076721	3300005616	Corn Rhizosphere	QMNRVSPMTEPSSARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0066905_1001915162	3300005713	Tropical Forest Soil	MAEPSPARTPYLLLWSTGIAALILSMAAFALWGTTGTRALFDMIVALCT*
Ga0068861_1002116022	3300005719	Switchgrass Rhizosphere	MNLSPMTEPSSARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0066903_1000593262	3300005764	Tropical Forest Soil	MNRVNPMSEPSSARTPYLLLWSTGIAALILSMAAFALWGTTGTRALFDMIVALCT*
Ga0066903_1016023302	3300005764	Tropical Forest Soil	MNRASPMTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0066903_1080501872	3300005764	Tropical Forest Soil	VSSMTEPSPARTPYLLLWSTGIAALILSMAAFALWGTTGTRALFDVIVALCT*
Ga0066903_1083404702	3300005764	Tropical Forest Soil	NSRYRASRFRQRLHSWYRRMNRVNSMTEPSPARTPYLLLWSTGITALILSMAAFALWGATGTRALFDVIVALCT*
Ga0075026_1004096182	3300006057	Watersheds	MNRVSQMTEPSSARTPYFLLWSTGVVALVLSMAAFALWGTTGTRTLFDMIVALCS*
Ga0070712_1004419232	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNPVSTMTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0075428_1003021141	3300006844	Populus Rhizosphere	RRTRAAQITTATGASPADTPYWLLWSTGIVAFVLSIVAFVLWGINGASTLFDMIVALCT*
Ga0075425_1014997192	3300006854	Populus Rhizosphere	MNQVSPMTETSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0075424_1000466322	3300006904	Populus Rhizosphere	VNPMTEPSPARTPYLLLWSTGIAALILSMVAFALWGTTGTRALFDMIVALCT*
Ga0075424_1005620852	3300006904	Populus Rhizosphere	MTETSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0075436_1005177292	3300006914	Populus Rhizosphere	MRSTRPNWLLWSSGIAAVVLAAVAFILWGTNGPGMLFDMIVALCM*
Ga0075435_1015131741	3300007076	Populus Rhizosphere	NRVSPMTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0126374_104081371	3300009792	Tropical Forest Soil	MNRVNSMTEPSPARTPYLLLWSTGITALILSMAAFALWGATGTRALFDVIVALCT*
Ga0126380_100277332	3300010043	Tropical Forest Soil	MTEPSPARTPYLLLWSTGIAALILSMAAFALWATTGTRALFDMIVALCT*
Ga0126380_104967272	3300010043	Tropical Forest Soil	MNRVNPMSEPSSTRTPYLLLWSTGIAALILSMAAFALWGTTGTRALFDMIVALCT*
Ga0126380_111263302	3300010043	Tropical Forest Soil	MNRVNPMTEPSPARTPYLLLWSTSIAALILSMAAFALWGTTGTRALFDMIVALCT*
Ga0126384_102544902	3300010046	Tropical Forest Soil	MTEPSPARTPYLLLWSTSIAALILSMAAFALWGTTGTRALFDMIVALCT*
Ga0126372_128993981	3300010360	Tropical Forest Soil	MNRVNSMTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGTRALFDVIVALCT*
Ga0126377_102968462	3300010362	Tropical Forest Soil	MNRVNPMTEPSPARTPYLLLWSTGIAALILSMAAFALWGTTGTRALFDLIVALCT*
Ga0126379_129505651	3300010366	Tropical Forest Soil	MNRVNPMTEPSPARTPYLLLWSTGIAALILSMAAFALWGTTGTRA
Ga0126383_104053272	3300010398	Tropical Forest Soil	PARTPYLLLWSTGIAALILSMAAFALWGTTGTRALFDMIVALCT*
Ga0134121_110339092	3300010401	Terrestrial Soil	MNRVNPMTEPSPARTPYLLLWSTGIAALILSMAAFALWGTTGTRALFDMIVAL
Ga0137483_100010114	3300011244	Glacier Forefield Soil	MTGTGTRTREAAEQSPARTPYGLLWTTGIAAVVLSIAAFILWGTNGASTLFDMIVALCT*
Ga0137397_104873322	3300012685	Vadose Zone Soil	GGSAGMSTTSPAADTPYRLLWSTGIAAFVLAVAAFALWGLNGASTLFDMIAAFCT*
Ga0137410_118443043	3300012944	Vadose Zone Soil	ARMSTPASATPYWLLWSSGIAAAVLAVAAFALWGTIGESTLFDMIVALCM*
Ga0164298_100305952	3300012955	Soil	MTEPSSARTPYLLLWSTGIAALVLSMTAFALWGTTGARTLFDMIVALCT*
Ga0164303_112457111	3300012957	Soil	EPSSARTPYLLLWSTGIAALVLSMAAFALWGTTGARTSFDMIVALCT*
Ga0164308_107385052	3300012985	Soil	MTEPSPARTPYLLLWSTGIAALVLGMAAFALWGTTGARTLFDMIVALCT*
Ga0164305_104183341	3300012989	Soil	MNRVNPMTEPSPARTPYLLLWSTGTAARTLSMAAFALWGTTGTRALFDMIVALCT*
Ga0157378_101578464	3300013297	Miscanthus Rhizosphere	PYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0163163_113801462	3300014325	Switchgrass Rhizosphere	SARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT*
Ga0132257_1022758431	3300015373	Arabidopsis Rhizosphere	MTEPSSARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMI
Ga0132255_1010751071	3300015374	Arabidopsis Rhizosphere	IGFVTEVSPADTPYWLLWSTGIVASVLCIAAFALWSVNGASTLFDMIVALCT*
Ga0184611_12397762	3300018067	Groundwater Sediment	AAEPPAANTPYGLLWTTGIAAVVLSVAAFIFWGTSGASTLFDMIVALCT
Ga0066667_108735451	3300018433	Grasslands Soil	MNRVSPMTEPSPARTPYLLLWSTGIAALILSMAAFALWATTGTRALFDMIVALCT
Ga0210399_104105231	3300020581	Soil	MSATSPAPGASPAGTPYRLLWSTGIAAFVLTAAAFALWGLNGTGTLFDIIAAFCT
Ga0126371_100999342	3300021560	Tropical Forest Soil	MTEPSPARTPYLLLWSTGITALILSMAAFALWGATGTRALFDVIVALCT
Ga0193714_10453851	3300023058	Soil	TGIGTRIRGAGEQPPAKTPYGLLWTTGIAAVVLSIAAFVLWGTNGASTLFDMIVALCT
Ga0207710_104788112	3300025900	Switchgrass Rhizosphere	MNRVSPMTEPSTARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT
Ga0207654_100627364	3300025911	Corn Rhizosphere	SSARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT
Ga0207689_100085752	3300025942	Miscanthus Rhizosphere	MTEPSSARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMFVALCT
Ga0207661_114797981	3300025944	Corn Rhizosphere	SPMTEPSSARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT
Ga0207677_113540932	3300026023	Miscanthus Rhizosphere	MTEPSTARTPYLLLWSTGIAALVLSMAAFALWGTTGARTL
Ga0207678_118865782	3300026067	Corn Rhizosphere	TEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT
Ga0207698_107034972	3300026142	Corn Rhizosphere	CPQMNRVSPMTEPSSARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT
Ga0207507_1032992	3300026805	Soil	MTEPSSARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALC
Ga0208761_10103212	3300026995	Soil	MTEPSSARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLF
Ga0208525_10193841	3300027288	Soil	VPCPQMNRVSAMTEPSSARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT
Ga0207428_104636172	3300027907	Populus Rhizosphere	MTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVAL
Ga0207428_113057411	3300027907	Populus Rhizosphere	TEPSTARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT
Ga0268264_122228681	3300028381	Switchgrass Rhizosphere	YRVSRRRQHLHSWRRHMNRVSPMTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT
Ga0307296_100230764	3300028819	Soil	MAEPSPSDTPYLLLWSTGVVAFVLCIVAFVLWGITGTRTLFDMIIALCT
Ga0307312_103522172	3300028828	Soil	LSPMAEPSPADTPYLLLWSTGVVAFVLCIVAFVLWGITGTRTLFDMIIALCT
Ga0318516_106039612	3300031543	Soil	MNRVNSMTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGTRALFDVIVALCT
Ga0318541_102887331	3300031545	Soil	PAPARTPYLLLWSTGIAALVLSMAAFALWGTTGTRALFDVIVALCT
Ga0318515_100995601	3300031572	Soil	PYLLLWSTGIAALVLSMAAFALWGTTGTRALFDVIVALCT
Ga0310915_100024989	3300031573	Soil	VNSMTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGTRALFDVIVALCT
Ga0307469_120030372	3300031720	Hardwood Forest Soil	MTTARTPYWLLWSVGGAAFVLSMLAFVLWGTTGTRTLFDMIVALCF
Ga0318500_100919651	3300031724	Soil	RRMNRVNSMTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGTRALFDVIVALCT
Ga0318501_100548891	3300031736	Soil	HSWYRRMNRVNSMTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGTRALFDVIVALC
Ga0307468_1002241702	3300031740	Hardwood Forest Soil	MTEPSPARTPYLLLWSTGIAVLVLSMAAFALWGTTGARTLFDMIVALCT
Ga0318566_105193751	3300031779	Soil	SMTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGTRALFDVIVALCT
Ga0318529_100656171	3300031792	Soil	STGAFANSRYRASRFRQRLHSWYRRMNRVNSMTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGTRALFDVIVALCT
Ga0318523_100692512	3300031798	Soil	MNRVNSMTEPAPARTPYLLLWSTGIAALVLSMAAFALWGTTGTRALFDVIVALCT
Ga0310904_112614361	3300031854	Soil	RRRQHLHSWRRHMNQVSPMTETSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT
Ga0310892_112857291	3300031858	Soil	SRRRQHLHSWRRHMNQVSPMTETSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT
Ga0318527_101291511	3300031859	Soil	VNSMTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGTRALFDVIVALC
Ga0310893_100078592	3300031892	Soil	MTETSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT
Ga0310900_115162262	3300031908	Soil	MNQVSPMTETSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT
Ga0310889_101511831	3300032179	Soil	SPMTETSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTLFDMIVALCT
Ga0307471_1012575021	3300032180	Hardwood Forest Soil	MTEPSSARTPYLLLWSTGVVALVLSMAAFALWGTTGTRTLFDMIVALCT
Ga0370493_0168337_370_531	3300034129	Untreated Peat Soil	MSTTGSGPQPARTPYWLLWSTGIVAVLLSAVAFVLWGINGTATLFDMIVALCT
Ga0370506_060727_16_177	3300034157	Untreated Peat Soil	MNTTGTGIPAARTPYWLLWSTGIVAFVLCVAAFVLWGINGASTLFDMIVALCT
Ga0373959_0016542_816_965	3300034820	Rhizosphere Soil	MTEPSPARTPYLLLWSTGIAALVLSMAAFALWGTTGARTVFDMIVALCT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094209

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences