Metagenome Family F094208

Overview

Basic Information

• Family ID: F094208
• Family Type: Metagenome
• Number of Sequences: 106
• Average Sequence Length: 42 residues
• Representative Sequence: QGPMPGHFKSGDVKWLPGGYTHTLTNTGKQEAKFVTLEFH
• Number of Associated Samples: 100
• Number of Associated Scaffolds: 106

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 3.85 %
• % of genes near scaffold ends (potentially truncated): 93.40 %
• % of genes from short scaffolds (< 2000 bps): 86.79 %
• Associated GOLD sequencing projects: 90
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (75.472 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (10.377 % of family members)
• Environment Ontology (ENVO): Unclassified (19.811 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (49.057 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 17.65%
  Coil/Unstructured: 82.35%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13563	2_5_RNA_ligase2	4.72
PF00903	Glyoxalase	3.77
PF07238	PilZ	2.83
PF00464	SHMT	2.83
PF16491	Peptidase_M48_N	2.83
PF12867	DinB_2	1.89
PF11999	Ice_binding	1.89
PF16694	Cytochrome_P460	1.89
PF00753	Lactamase_B	1.89
PF00144	Beta-lactamase	1.89

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0112	Glycine/serine hydroxymethyltransferase	Amino acid transport and metabolism [E]	2.83
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	2.83
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.89
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.89
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	1.89
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.89
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	1.89
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	0.94
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.94
COG0357	16S rRNA G527 N7-methylase RsmG (former glucose-inhibited division protein B)	Translation, ribosomal structure and biogenesis [J]	0.94

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.47 %
Unclassified	root	N/A	24.53 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.47 %
Unclassified	root	N/A	24.53 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.47 %
Unclassified	root	N/A	24.53 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.91 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	1.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.89 %
Unclassified	root	N/A	24.53 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.94 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.77 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.89 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.94 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2.83 %
Unclassified	root	N/A	24.53 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.26 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	1.89 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.26 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.77 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.89 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Nitrospirae bacterium 13_2_20CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	1.89 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	2.83 %
Unclassified	root	N/A	24.53 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.26 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %
Bradymonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales	0.94 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	2.83 %
Nitrospirae bacterium 13_2_20CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	1.89 %
Unclassified	root	N/A	24.53 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	1.89 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.94 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.26 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %
Cyanobacteria bacterium 13_1_20CM_4_61_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	1.89 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	2.83 %
Lujinxingiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Lujinxingiaceae	0.94 %
Nitrospirae bacterium 13_2_20CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	1.89 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.94 %
Unclassified	root	N/A	24.53 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.26 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %
Cyanobacteria bacterium 13_1_20CM_4_61_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	1.89 %
Fimbriiglobus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus	2.83 %
Lujinxingia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Lujinxingiaceae → Lujinxingia	0.94 %
Nitrospirae bacterium 13_2_20CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	1.89 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.94 %
Unclassified	root	N/A	24.53 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.26 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %
Cyanobacteria bacterium 13_1_20CM_4_61_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	1.89 %
Fimbriiglobus ruber	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus → Fimbriiglobus ruber	2.83 %
Lujinxingia litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Lujinxingiaceae → Lujinxingia → Lujinxingia litoralis	0.94 %
Nitrospirae bacterium 13_2_20CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	1.89 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.94 %
Unclassified	root	N/A	24.53 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001356|JGI12269J14319_10128919	Not Available	1143
3300001991|JGI24743J22301_10020046	All Organisms → cellular organisms → Bacteria	1272
3300004080|Ga0062385_10219752	Not Available	1039
3300005334|Ga0068869_100287306	All Organisms → cellular organisms → Bacteria	1324
3300005434|Ga0070709_10111822	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1837
3300005445|Ga0070708_100182071	All Organisms → cellular organisms → Bacteria	1964
3300005526|Ga0073909_10361270	All Organisms → cellular organisms → Bacteria	675
3300005542|Ga0070732_10249522	All Organisms → cellular organisms → Bacteria	1063
3300005542|Ga0070732_10905464	All Organisms → cellular organisms → Bacteria → Acidobacteria	539
3300005544|Ga0070686_100123017	All Organisms → cellular organisms → Bacteria	1784

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.45%
Host-Associated	Host-Associated	7.55%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	15.09%
Plants	Host-Associated → Plants	7.55%
Terrestrial	Environmental → Terrestrial	77.36%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	11.32%
Peat	Environmental → Terrestrial → Peat	4.72%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.89%
Sediment	Environmental → Aquatic → Sediment	3.77%
Soil	Environmental → Terrestrial → Soil	72.64%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.72%
Loam	Environmental → Terrestrial → Soil → Loam	16.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.32%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.66%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.60%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.72%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.13%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.83%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.66%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.89%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.83%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.89%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.94%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.60%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.38%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.94%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.94%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.38%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.77%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_101289193	3300001356	Peatlands Soil	PMPGHFKSGDSKWLPANYSHTITNTGTKAAKFVTLEFP*
JGI24743J22301_100200462	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	PMPGKFKSGDSKWLPGGYTHTLTNTGKQPAKFITLEFPR*
Ga0062385_102197521	3300004080	Bog Forest Soil	SPRQASMATHLKSGDSKWLPANYSRTINTGAKPAKFVTLEFP*
Ga0068869_1002873061	3300005334	Miscanthus Rhizosphere	DVEGQGQMQAKIKSGDSKWVAGGFTHTVTNIGKQPAKFIALEFPK*
Ga0070709_101118221	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	RSDVEGQGPMPGKFMAGDAKWLPGGYSHTLTNTGKQTARFITFEFP*
Ga0070708_1001820714	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	GMVPMPGRFKSGDVKWLPGGYTHTLTNVGRSPAKFVTVEFPAK*
Ga0073909_103612703	3300005526	Surface Soil	FKSGDVKWLPGGYTHTLTNVGKSAAKFVTVEFPGK*
Ga0070732_102495221	3300005542	Surface Soil	PMPGHLKSGDVKWLPGDYTHTLTNVGKQEAKFVTLEFH*
Ga0070732_109054641	3300005542	Surface Soil	LQMRSDVVGQGPMPGIFKSGDVKWLPGGYTHTLTNVSNQPAKFVTLEFH*
Ga0070686_1001230173	3300005544	Switchgrass Rhizosphere	DLRSDVEGQGPMPGKFKSGDSKWLPGGYTHTLTNTGKQPAKFITLEFPR*
Ga0066692_102946221	3300005555	Soil	SDVEGQGPMPGHFKSGDVKWLPGGYTHTLTNVGKQAAKFVTLEFQ*
Ga0070761_103359772	3300005591	Soil	IRSDVEGMGPMPGHFKSGDSKWLPGNYSHTITNTGTKPAKFVTLEFP*
Ga0070761_105771732	3300005591	Soil	DVEGKGPMPGHFKSGDVKWLPGGYTHTLTNTGKQEAKFVTLEFH*
Ga0070763_105503941	3300005610	Soil	DIVGQGPMPGIFKSGDVKWLAGGYTHTLTNVSNQPAKFVTLEFH*
Ga0070764_103979321	3300005712	Soil	IRSDVQSQGSMPEHFKSGDSKWLPGNYSSTITNTGSKPAKFVTLEFP*
Ga0068860_1006310221	3300005843	Switchgrass Rhizosphere	EGQGPMPGKFKSGDSKWLPGGYTHTLTNTGKQPAKFITLEFPR*
Ga0075019_105113212	3300006086	Watersheds	LDLRSDVEGKGSMPGKFKSGDIKWVPGNYTHTLTNTGKQPARFVTLEF*
Ga0075015_1001813314	3300006102	Watersheds	LDLRSDVEGKGPMPGKFKSGDVKWVPGGYTHTVTNVAKSPARFVTVEF*
Ga0075015_1008951261	3300006102	Watersheds	PISVKIKAGDVRWVPGGYTHTLTNTGQQEAWFITLEF*
Ga0070712_1005288852	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	QGPMPGHFKAGDIKWIPGGYTHTLTNTGKQSARFVAVEFP*
Ga0070765_1000886081	3300006176	Soil	RSDVEGMGPMPGKFKSGDVKGLPGGNTHTLTNEGKSPARFVTVEL*
Ga0075021_110466881	3300006354	Watersheds	MPGHIKSGDVKWLPGGYTHTLTNTGKQEAKFVTLEFQ*
Ga0066665_104673911	3300006796	Soil	AGQGPVPGHFKSGDTKWLPGGYTHTLTNTGKQPARFITLEFPAEKTTK*
Ga0079220_112987862	3300006806	Agricultural Soil	RSVGEGQSSTLTKLKSGDVKWLPGGYTHTLSNAAKQPAKFITLEFPQ*
Ga0099829_100232491	3300009038	Vadose Zone Soil	GPNSGPMPAHFKSGDSKWLPGSYSHTITNTGAKPAKFVTLEFP*
Ga0099830_101040005	3300009088	Vadose Zone Soil	EGMGPMPGHFKSGDVKWLPGGYSHTLTNVGKSNAKFITLEFP*
Ga0111539_114393931	3300009094	Populus Rhizosphere	QGPMPGKFKSGDSKWLPGGYTHTLTNAGKQPAKFITLEFPR*
Ga0116214_11784762	3300009520	Peatlands Soil	GHFKSGEVKWLPGGYTHTLTNVGKQQAKFVTLEFQ*
Ga0116218_14540702	3300009522	Peatlands Soil	LDVRSDVEGQGPMPGHFKSGDVKWLPGGYTHTLTNVGKQEAKFVTLEFH*
Ga0074044_107474081	3300010343	Bog Forest Soil	PPSHFKSGDHKWLPASDSSAITNPSPKPAKFVTLEFP*
Ga0126370_118462252	3300010358	Tropical Forest Soil	LDIRSDIEGAGPMPGKFKSGDVKWLRGGYTHTLTNTGSAVAKLVTVEFK*
Ga0126377_104628141	3300010362	Tropical Forest Soil	DVAGKSPMPGHFKAGESKWIPGGYTHTLTNAGKQPAKFVTLEFH*
Ga0134122_100444781	3300010400	Terrestrial Soil	QGPMPGKFKSGDSKWLPGGYTHTLTNTGKQPAKFITLEFPR*
Ga0134122_102798432	3300010400	Terrestrial Soil	MPGKFKAGDVKWLPGGYTHTLTNTAKSTARLVTVEFKP*
Ga0137393_106780972	3300011271	Vadose Zone Soil	GQLKSGEVKWLPGGYTHTLTNVGKQPAKFITLEFH*
Ga0137364_109466882	3300012198	Vadose Zone Soil	GPMLGYFKSGDVKWLPGGYSHTLTNVGKAEAKFITLEFH*
Ga0137383_107546862	3300012199	Vadose Zone Soil	EIRSDVVGQGPMPGHFKSGDVKWLPGGYSHTLTNVGKTEAKFITLEFH*
Ga0137380_115729651	3300012206	Vadose Zone Soil	VGPMPGKFKSGDVKWLPGGYTHTLTNVGNSPAKFVTVEFPGK*
Ga0137381_107446553	3300012207	Vadose Zone Soil	PAPAQLKSGDAKWLPGSYTHTLTNTGKQPAKFVTVEFP*
Ga0157352_10704931	3300012519	Unplanted Soil	KGPMPVKLKSGDSKWLAGGYTHTLTNTGKQPAKFITLEFPK*
Ga0137394_106616571	3300012922	Vadose Zone Soil	MPGHFKSGDSKWLPGNYSHTITNVGKHPAKFMTLQFP*
Ga0137419_105238561	3300012925	Vadose Zone Soil	PMPGHFKSGESKWLPGGYSHTITNVGRLPAKFVTVEFP*
Ga0137416_122220022	3300012927	Vadose Zone Soil	RSDVEGMGPMPGKFKSSDVKWLPGGYTHTLTNVGKSAVKFVTVEFPGN*
Ga0134075_105860581	3300014154	Grasslands Soil	GPMPGKFKSGDVKWLPGGYTHTLTNVGNSPAKFVTVEFPGK*
Ga0181524_103842592	3300014155	Bog	DVEGQGPMPGHFKSGDVKWLPGGYTHTLTNTGKQEAKFVTLEFH*
Ga0181534_100919313	3300014168	Bog	FMSGQVKWLPGGYSHTLTNTGKTPAKFVTLEFPAGTPK*
Ga0181526_102609453	3300014200	Bog	DVEGQGSMPGHFKSGDVKWLPGGYTHTLTNTGKQEAKFVTLEFH*
Ga0182015_100557103	3300014495	Palsa	MDPRPGHFKSGDSKWLPGNYAHTLTNTGTNPAKFVTLEFP*
Ga0157379_119405461	3300014968	Switchgrass Rhizosphere	RSDVEGQGQMQAKIKSGDSKWVAGGFTHTVTNIGKQPAKFIALEFPK*
Ga0132257_1045829312	3300015373	Arabidopsis Rhizosphere	EGKGPMPGHFKAGESKWIPGGYTHTLTNVGKEPAKFVTLEFH*
Ga0187801_105180232	3300017933	Freshwater Sediment	EGMGPMPGKLKAGDVKWLPGGYTHTLTNTGARPARFVTVEF
Ga0187847_102368661	3300017948	Peatland	MPGKFKSGDIKWLPGGYTHTLTNVGQSPARFVTVEF
Ga0187815_101255732	3300018001	Freshwater Sediment	EIRSDVEGQGPMPGHFKSGDVKWLPGGYTHTLTNTGKQEAKFVTLEFH
Ga0187805_103352842	3300018007	Freshwater Sediment	DVELRSDVEGKGPMPGKFKSGDVKWLPGDYTHTLTNTSKQTARFVIVEF
Ga0187810_104363801	3300018012	Freshwater Sediment	GQGPMPGKFKSGDVKWLPGGYTHTVTNVGKSLARLVTVEF
Ga0187871_100442711	3300018042	Peatland	FMSGQVKWLPGGYSHTLTNTGKTPAKFVTLEFPAGTPK
Ga0187766_109880071	3300018058	Tropical Peatland	PMPAKLKAGDVKWVPGGFTHTLTNTGTLGARLVTVEFAEAKE
Ga0066655_110875742	3300018431	Grasslands Soil	GQGPMPGRFKSGDVKWLPGGYTHTLTNTGKAPARLVTVEFK
Ga0193728_11001102	3300019890	Soil	DVVGQGPMLGYFKSGDVKWLPGGYSHTLTNVGKAEAKFITLEFH
Ga0210400_113931502	3300021170	Soil	RSQPGHFKSGDSKWFPGGYWRAVTNVGHNPAKYVILEFP
Ga0210408_105455382	3300021178	Soil	MPGIFKSGDVKWLPGGYTHTLTNVSNQPAKFVTMEFH
Ga0210386_100283011	3300021406	Soil	EGQGPMPGHLKSGDVKWLPGGYTHTLTNTGKQEAKLVTLEFQ
Ga0210386_117032731	3300021406	Soil	VNFKSGDAKWLPGGYIHTLTNISNQEAKFVTLEFH
Ga0210383_112032312	3300021407	Soil	LEIRSDVEGKGPMPGHLKSGDVKWLPGGYTHTLTNTGKQEAKLVTLEFQ
Ga0193695_11216142	3300021418	Soil	DLEIRSDVVGQGPMLGYFKSGDVKWLPGGYSHTLTNLGKAEAKFITLEFH
Ga0210394_110203223	3300021420	Soil	VEGMGPMPGHFKSGDSKWLPGNYSHTITNTGTKPAKFVTLEFP
Ga0210391_103407983	3300021433	Soil	PMPGHFKSGDVKWLPGGYTHTLTNTGKQEAKFVTLEFH
Ga0210398_103620762	3300021477	Soil	IRSDVEGMGPMPGHFKSGDSKWLPGNYSHTITNTATKPAKFVTLEFP
Ga0210402_107938441	3300021478	Soil	PTLGHLKSGEVKWLPGGYTHTLTNVGKQDAKFVTLEFH
Ga0208935_10400261	3300025414	Peatland	IRSDVEGQGPMPGHFKSGDVKWLPGGYTHTLTNTGKQEAKFVTLEFH
Ga0207699_105157631	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VRSDVEGQGPMPGKFMAGDAKWLPGGYSHTLTNTGKQTARFITFEFP
Ga0207663_105805312	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	GEVKWLPGDYTHTLTNTGKSVAKFVILEFPPSANAK
Ga0207700_109125911	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	GSGPMPGKFKAGDIKWLPGGYTHTLTNVGKDSARFITLEF
Ga0207689_115023711	3300025942	Miscanthus Rhizosphere	DVEGQGQMQAKIKSGDSKWVAGGFTHTVTNIGKQPAKFIALEFPK
Ga0207639_101948801	3300026041	Corn Rhizosphere	PGKFKSGDSKWLPGGYTHTLTNTGKQPAKFITLEFPR
Ga0209267_12252281	3300026331	Soil	DLEVRSDVEGQGPMPGHFKSGDVKWLPGGYTHTLTNVGKQAAKFVTLEFQ
Ga0209056_103738691	3300026538	Soil	GHFKSGDTKWLPGGYTHTLTNTGKQPARFITLEFPAEKTTK
Ga0209421_11380331	3300027432	Forest Soil	VSDVYLRSDTPRQASVATHLKSGDSKWLPANYSRTINTGTKAAKFVTLEFP
Ga0208324_10442573	3300027604	Peatlands Soil	VPMSAHFKPGDVQWLPAGLTHTLTNTAHTPAKFVTLEFH
Ga0208827_11107921	3300027641	Peatlands Soil	GHFKSGDFKWLPGGYTHTLTNVGKQEAKFVTLEFH
Ga0209447_102210451	3300027701	Bog Forest Soil	SGEVEWIPGGVTHSLTNIGKQQAKFVTLEFHDPKELL
Ga0209580_101496951	3300027842	Surface Soil	GKGPMPGHLKSGDVKWLPGDYTHTLTNVGKQEAKFVTLEFH
Ga0209274_102500591	3300027853	Soil	SDVEGMGPMPGHFKSGDSKWLPGNYSHTITNTGTKPAKFVTLEFP
Ga0209169_102551652	3300027879	Soil	MPEHFKSGDSKWLPGNYSSTITNTGSKPAKFVTLEFP
Ga0209590_108626372	3300027882	Vadose Zone Soil	MPGHFKSADVKWLPGGYSHTVTNVGKSEAKFITLEFH
Ga0209275_100270544	3300027884	Soil	QGPMPGHFKSGDVKWLPGGYTHTLTNTGKQEAKFVTLEFH
Ga0209380_103723771	3300027889	Soil	GSAPTAEKLKAGEVKWLPGGYTHTVTNVGKTPARIVAVEF
Ga0209415_103520303	3300027905	Peatlands Soil	PMPGHLKSGDVKWLPGGYTHTLTNTGKQEAKFVTLEFH
Ga0265353_10178882	3300028015	Soil	SDVQSQGSMPEHFKSGDSKWLPGNYSSTITNTGSKPAKFVTLEFP
Ga0302267_1000529118	3300028745	Bog	APTLAKFKSGEIKWLPGGYTHTVTNVGKSPARLVTVEF
Ga0308309_101525143	3300028906	Soil	SHPASHMKSGDSKWLPGNITHTVTNTGTKPAKFVTLEFP
Ga0311340_109198821	3300029943	Palsa	MDPRPGHFKSGDSKWLPGNYAHTLTNTGTNPAKFVTLEFP
Ga0311338_101757681	3300030007	Palsa	VHGMDPRPGHFKSGDSKWLPGNYAHTLTNTGTNPAKFVTLEFP
Ga0302281_100185771	3300030044	Fen	RAPTLAKFKSGEIKWLPGGYTHTVTNVGKSPARLVTVEF
Ga0311353_115010791	3300030399	Palsa	DIRSDVEGQIPMLGHFKSGDSKWLPGGYSHSITNAGAAPAKFVTLEFP
Ga0170824_1119166061	3300031231	Forest Soil	DVEGQGPNSGPMPAHFKSGDSKWLPGNYSHTLTNTGAKPARFVTLEFP
Ga0310686_1112463001	3300031708	Soil	PMPGIFKSGDVKWLPGGYTHTLTNVSNQPAKFVTLEFH
Ga0310686_1116582871	3300031708	Soil	DLGHFMSGQVQWLPGDYSQTITNTGKTKAKFVTLEFPPQSK
Ga0307476_109254353	3300031715	Hardwood Forest Soil	GQGPMPGKFKAGDIKWLPGGYTHTLTNVGKNPARMVTVEF
Ga0318501_102419703	3300031736	Soil	RSDVQGRGPSTVQLKAGDIKWVPGGYTHTLTNTGKQAAKFVAVEFP
Ga0311301_101212662	3300032160	Peatlands Soil	MPAHLKSGEYKWLPGNYSHTITNIGSKPAKFVTLEFP
Ga0307471_1027217862	3300032180	Hardwood Forest Soil	SDVVGQGPMLGYFKSGDVKWSPGGYSHTLTNVGKAEAKFITLEFH
Ga0335079_119404261	3300032783	Soil	VEGRGPMPEHLKAGEVKWLPGGYTHTVTNMSKQPAKIVTLEFQP
Ga0310914_103444841	3300033289	Soil	SDVQGRGPSTVQLKAGDIKWVPGGYTHTLTNTGKQAAKFVAVEFP
Ga0314865_051362_478_603	3300033806	Peatland	MPAKLKAGDVKWVPGGFTHTLTNTGTSVARLVTVEFAGAKE
Ga0370515_0081682_1216_1347	3300034163	Untreated Peat Soil	MERKSPKPGHFKSGDSKWLPANYSHTLANTGTKPAKFVTLEFP