Metagenome / Metatranscriptome Family F094201

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094201
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	79 residues
Representative Sequence	MSELARLRDDVIPPPDLVARVMTRVSEPRLPSVWQWLNRPFLIEIRISPIVLIGLALALGTAFVYVGATIR
Number of Associated Samples	81
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	50.94 %
% of genes near scaffold ends (potentially truncated)	26.42 %
% of genes from short scaffolds (< 2000 bps)	79.25 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.792 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.981 % of family members)
Environment Ontology (ENVO)	Unclassified (25.472 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.660 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.58% β-sheet: 0.00% Coil/Unstructured: 42.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF08281	Sigma70_r4_2	57.55
PF00563	EAL	14.15
PF01712	dNK	3.77
PF02518	HATPase_c	1.89
PF00986	DNA_gyraseB_C	0.94
PF01751	Toprim	0.94
PF07635	PSCyt1	0.94
PF10282	Lactonase	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	14.15
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	14.15
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	14.15
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	14.15
COG1428	Deoxyadenosine/deoxycytidine kinase	Nucleotide transport and metabolism [F]	3.77
COG0187	DNA gyrase/topoisomerase IV, subunit B	Replication, recombination and repair [L]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.79 %
Unclassified	root	N/A	13.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.79 %
Unclassified	root	N/A	13.21 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.79 %
Unclassified	root	N/A	13.21 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	19.81 %
Unclassified	root	N/A	13.21 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	10.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.43 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.77 %
Caldiserica/Cryosericota group	clade	All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group	0.94 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	19.81 %
Unclassified	root	N/A	13.21 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	10.38 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.77 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.77 %
Caldiserica	phylum	All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Caldiserica	0.94 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	19.81 %
Unclassified	root	N/A	13.21 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	10.38 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.77 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Caldiserica → environmental samples	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	19.81 %
Unclassified	root	N/A	13.21 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	10.38 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.77 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2.83 %
Caldiserica bacterium enrichment culture clone B31168	species	All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Caldiserica → environmental samples → Caldiserica bacterium enrichment culture clone B31168	0.94 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	19.81 %
Unclassified	root	N/A	13.21 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	10.38 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.77 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2.83 %
Caldiserica bacterium enrichment culture clone B31168	species	All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Caldiserica → environmental samples → Caldiserica bacterium enrichment culture clone B31168	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459002\|F0B48LX02H3VUA	Not Available	501	Open in IMG/M
3300002568\|C688J35102_118424225	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300002568\|C688J35102_120908767	All Organisms → cellular organisms → Bacteria	2217	Open in IMG/M
3300003323\|rootH1_10205726	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300005329\|Ga0070683_100222910	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1792	Open in IMG/M
3300005336\|Ga0070680_101182547	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	661	Open in IMG/M
3300005338\|Ga0068868_100791303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	855	Open in IMG/M
3300005341\|Ga0070691_10306875	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300005436\|Ga0070713_101637093	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300005533\|Ga0070734_10005347	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	11415	Open in IMG/M
3300005541\|Ga0070733_10074482	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2143	Open in IMG/M
3300005541\|Ga0070733_10626943	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300005563\|Ga0068855_100014234	All Organisms → cellular organisms → Bacteria → Proteobacteria	9582	Open in IMG/M
3300005591\|Ga0070761_10813698	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	588	Open in IMG/M
3300005602\|Ga0070762_10280752	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300005602\|Ga0070762_10354780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	936	Open in IMG/M
3300005602\|Ga0070762_10998121	Not Available	574	Open in IMG/M
3300005610\|Ga0070763_10523718	All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Caldiserica → environmental samples → Caldiserica bacterium enrichment culture clone B31168	680	Open in IMG/M
3300005614\|Ga0068856_100048045	All Organisms → cellular organisms → Bacteria	4204	Open in IMG/M
3300005614\|Ga0068856_100314107	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1585	Open in IMG/M
3300005614\|Ga0068856_100336692	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1527	Open in IMG/M
3300005616\|Ga0068852_100783872	Not Available	967	Open in IMG/M
3300005712\|Ga0070764_11080928	Not Available	508	Open in IMG/M
3300005944\|Ga0066788_10022513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1402	Open in IMG/M
3300005993\|Ga0080027_10003501	All Organisms → cellular organisms → Bacteria	5923	Open in IMG/M
3300005993\|Ga0080027_10189446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	800	Open in IMG/M
3300005993\|Ga0080027_10213387	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	755	Open in IMG/M
3300005994\|Ga0066789_10000044	All Organisms → cellular organisms → Bacteria → Proteobacteria	32238	Open in IMG/M
3300006175\|Ga0070712_100778336	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300006176\|Ga0070765_101705397	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	592	Open in IMG/M
3300006176\|Ga0070765_101775360	Not Available	579	Open in IMG/M
3300006638\|Ga0075522_10009526	All Organisms → cellular organisms → Bacteria → Proteobacteria	6544	Open in IMG/M
3300009093\|Ga0105240_11880749	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	623	Open in IMG/M
3300009551\|Ga0105238_10453640	Not Available	1279	Open in IMG/M
3300009551\|Ga0105238_11399150	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	727	Open in IMG/M
3300010371\|Ga0134125_10004645	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	15691	Open in IMG/M
3300010373\|Ga0134128_10117911	All Organisms → cellular organisms → Bacteria	3012	Open in IMG/M
3300010398\|Ga0126383_11492155	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	766	Open in IMG/M
3300010401\|Ga0134121_11018143	Not Available	814	Open in IMG/M
3300010869\|Ga0126359_1002819	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300010869\|Ga0126359_1134337	All Organisms → cellular organisms → Bacteria	1401	Open in IMG/M
3300012984\|Ga0164309_10547574	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300013105\|Ga0157369_11375032	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	719	Open in IMG/M
3300014968\|Ga0157379_10394710	All Organisms → cellular organisms → Bacteria	1271	Open in IMG/M
3300020021\|Ga0193726_1272903	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300020070\|Ga0206356_10645253	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	565	Open in IMG/M
3300020081\|Ga0206354_11120011	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300020582\|Ga0210395_10622133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	810	Open in IMG/M
3300021180\|Ga0210396_10500358	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300021181\|Ga0210388_10004409	All Organisms → cellular organisms → Bacteria → Proteobacteria	11027	Open in IMG/M
3300021181\|Ga0210388_10215924	All Organisms → cellular organisms → Bacteria	1679	Open in IMG/M
3300021181\|Ga0210388_11288534	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300021377\|Ga0213874_10161274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	788	Open in IMG/M
3300021401\|Ga0210393_10699907	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	826	Open in IMG/M
3300021401\|Ga0210393_10877195	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300021402\|Ga0210385_10022260	All Organisms → cellular organisms → Bacteria	4030	Open in IMG/M
3300021402\|Ga0210385_10252667	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300021403\|Ga0210397_10589322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	849	Open in IMG/M
3300021404\|Ga0210389_10009285	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	7603	Open in IMG/M
3300021405\|Ga0210387_10015637	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	5876	Open in IMG/M
3300021405\|Ga0210387_11720943	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	530	Open in IMG/M
3300021474\|Ga0210390_11298061	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300021475\|Ga0210392_10678334	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300021478\|Ga0210402_11380137	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300022714\|Ga0242671_1067426	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300025494\|Ga0207928_1037503	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300025627\|Ga0208220_1030653	All Organisms → cellular organisms → Bacteria	1667	Open in IMG/M
3300025917\|Ga0207660_11037249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	669	Open in IMG/M
3300025921\|Ga0207652_10148131	Not Available	2101	Open in IMG/M
3300025924\|Ga0207694_10792712	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	800	Open in IMG/M
3300025928\|Ga0207700_11679238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	561	Open in IMG/M
3300025944\|Ga0207661_10125656	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2190	Open in IMG/M
3300026078\|Ga0207702_10138459	All Organisms → cellular organisms → Bacteria	2199	Open in IMG/M
3300026078\|Ga0207702_10292853	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1543	Open in IMG/M
3300026078\|Ga0207702_11239779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	740	Open in IMG/M
3300026078\|Ga0207702_11608032	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	643	Open in IMG/M
3300026281\|Ga0209863_10001478	All Organisms → cellular organisms → Bacteria	9085	Open in IMG/M
3300026291\|Ga0209890_10000168	All Organisms → cellular organisms → Bacteria → Proteobacteria	30946	Open in IMG/M
3300027826\|Ga0209060_10004590	All Organisms → cellular organisms → Bacteria → Proteobacteria	10652	Open in IMG/M
3300027879\|Ga0209169_10339653	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300027879\|Ga0209169_10523122	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300027884\|Ga0209275_10118550	All Organisms → cellular organisms → Bacteria	1374	Open in IMG/M
3300027884\|Ga0209275_10146299	All Organisms → cellular organisms → Bacteria	1249	Open in IMG/M
3300027905\|Ga0209415_10356557	Not Available	1213	Open in IMG/M
3300028563\|Ga0265319_1042199	All Organisms → cellular organisms → Bacteria	1535	Open in IMG/M
3300028563\|Ga0265319_1248319	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300028577\|Ga0265318_10117166	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	979	Open in IMG/M
3300028906\|Ga0308309_10593606	Not Available	961	Open in IMG/M
3300028906\|Ga0308309_10913876	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	762	Open in IMG/M
3300029984\|Ga0311332_10664284	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	826	Open in IMG/M
3300030114\|Ga0311333_10254919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1382	Open in IMG/M
3300031057\|Ga0170834_108649975	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300031128\|Ga0170823_13343065	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300031249\|Ga0265339_10152100	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
3300031595\|Ga0265313_10084725	All Organisms → cellular organisms → Bacteria	1433	Open in IMG/M
3300031595\|Ga0265313_10437614	Not Available	509	Open in IMG/M
3300031680\|Ga0318574_10900867	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300031938\|Ga0308175_103006535	Not Available	525	Open in IMG/M
3300031939\|Ga0308174_10342573	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300032074\|Ga0308173_11624846	Not Available	608	Open in IMG/M
3300032770\|Ga0335085_11682624	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300032893\|Ga0335069_11264673	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	805	Open in IMG/M
3300032896\|Ga0335075_10248968	All Organisms → cellular organisms → Bacteria	2050	Open in IMG/M
3300032896\|Ga0335075_11578309	Not Available	541	Open in IMG/M
3300032954\|Ga0335083_10003648	All Organisms → cellular organisms → Bacteria	19861	Open in IMG/M
3300034130\|Ga0370494_074304	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	857	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.36%
Host-Associated	Host-Associated	22.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.36%
Plants	Host-Associated → Plants	22.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.47%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.32%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.43%
Peat	Environmental → Terrestrial → Peat	1.89%
Roots	Host-Associated → Plants → Roots	0.94%
Rhizome	Host-Associated → Plants → Rhizome	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.62%
Loam	Environmental → Terrestrial → Soil → Loam	23.58%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.66%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.66%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.43%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.49%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.60%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.66%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	13.21%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	8.49%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	5.66%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.72%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.77%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	3.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.83%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.89%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.94%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.94%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.94%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.94%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003323	Sugarcane root Sample H1	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010869	Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025494	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025627	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028563	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG	Host-Associated	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029984	I_Fen_E1 coassembly	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300034130	Peat soil microbial communities from wetlands in Alaska, United States - Collapse_03_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E1_02518240	2170459002	Grass Soil	VSGAEQQRRTTDRMTELRRLRDDVTPPHDLVARVMTRVSEPRMPSFWQWLNRPVQLELRLSPVFLIGLALALAAGFIYVGATLR
C688J35102_1184242252	3300002568	Soil	MSELARLRDDVIPPPDLVARVMTRVSQPRLPSFWQWLNRPFVIEIRMSPIVLIGLALALGTAFVYVGATIR*
C688J35102_1209087672	3300002568	Soil	MSELARLRDDVIPPPDLVARVMTRVSEPRLPSVWQWLNRPFLIEIRLSPIVIIGLALALGTAFVYVGATIR*
rootH1_102057262	3300003323	Sugarcane Root And Bulk Soil	VNADPRAQEPGRLADLAALCDVDPPPNLVARVMTRVSSEPRLPSVWQWLRRPFVIEVRISPLVLIGMALALGAAFVYVGATLK*
Ga0070683_1002229102	3300005329	Corn Rhizosphere	MSELAHLRDDVIPPPDLVARVMTRVSEPRLPSVWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIR*
Ga0070680_1011825472	3300005336	Corn Rhizosphere	VNADPRAQEPGRLADLAALGDVDPPPNLVARVMTRVSSEPRLPSLWQWLCRPFVIEVRISPLVLIGMALALGAAFVYVGATLR*
Ga0068868_1007913032	3300005338	Miscanthus Rhizosphere	MSELARLRDDVIPPPDLVARVMTRVSQPRLPSVWQWLNRPFLIEIRISPIVLIGLALALGTAFVYVGATIR*
Ga0070691_103068752	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MVELARLRDDVIPPPDLVARVMTRVSQPRLPSVWQWLNRPFLIEIRISPIVLIGLALALGTAFVYVGATIR*
Ga0070713_1016370932	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VSSEAPDQGRVAELARLREVDLPPNLVARVMTRVSEPRLPSVWQWLHRPFVIEVRISPLLLIAIALALGIAFVYVGATLK*
Ga0070734_100053472	3300005533	Surface Soil	VSTVEQPPAARGRMPELRRLRDDVTPPPDLVARVMTRVSEPRLPSIWQWLNRPVLLELRISPLVMIGLAMALGAAFVYVGATLR*
Ga0070733_100744823	3300005541	Surface Soil	VNVEPRNNRISELARLRDDVTPPPDLVARVMTRVSEPRFPSLWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIR*
Ga0070733_106269432	3300005541	Surface Soil	VSGAEPRRVSDRRMTELRRLRDDVAPPPDLVARVMTKVSEPRVPSFWQWMNRPVQFELRLSPIFLIGLALVLTAGFIYVGATLR*
Ga0068855_1000142343	3300005563	Corn Rhizosphere	VNADPRAQEPGRLADLAALGDVDPPPNLVARVMTRVSSEPRLPSLWQWLRRPFVIEVRISPLVLIGMALALGAAFVYVGATLR*
Ga0070761_108136982	3300005591	Soil	MTELARLRDDVAPPPDLVARVMTRVSEPRFPSLWQWLNRPFLIEIRITPIVIIGLALALGTAFVYVGATIK*
Ga0070762_102807521	3300005602	Soil	DRTRGGHIVNPATGRPPAMIEILEQPISELAHLREVDPPANLVARVMTRLSEPRLPSVWQWLRRPFCIEIRISPLALIGLGLVVIAAFVFVGATLR*
Ga0070762_103547802	3300005602	Soil	MTELARLRDEVTPPPDLVARVMTRVSEPRLPSVWQWLRRPFLIEIRISPILLIGLAMALGAAFVYVGATLR*
Ga0070762_109981211	3300005602	Soil	VNVESRNNRISELARLRDDVTPPPDLVARVMTRVSEPRFPSLWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIK*
Ga0070763_105237182	3300005610	Soil	MIEILEQPISELAHLREVDPPANLVARVMTRLSEPRLPSLWQWLRRPFCIEIRISPLALIGLGLVVIAAFVFVGATLR*
Ga0068856_1000480454	3300005614	Corn Rhizosphere	VTSAGDPGRLDDLAGLREVDPPANLVARVMTRVSEPRLPSVWQWLRRPFVIEVRISPLLLIGIAMALGAAFVYVGATLK*
Ga0068856_1003141072	3300005614	Corn Rhizosphere	RLREVDLPPNLVARVMTRVSEPRLPSVWQWLRRPFVIEVRISPLLLIAIALALGVAFVYVGATLK*
Ga0068856_1003366921	3300005614	Corn Rhizosphere	RAQEPGRLADLAALGDVDPPPNLVARVMTRVSSEPRLPSLWQWLRRPFVIEVRISPLVLIGMALALGAAFVYVGATLR*
Ga0068852_1007838722	3300005616	Corn Rhizosphere	VNADPRAQEPGRLADLAALGDVDPPPNLVARVMTRVSSEPRLPSLWQWLCRPFVIEVRISPLVLIGMA
Ga0070764_110809281	3300005712	Soil	RPRHAARPDRTRGGHIVNPATGRPPAMIEILEQPISELAHLREVDPPANLVARVMTRLSEPRLPSVWQWLRRPFCIEIRISPLALIGLGLVVIAAFVFVGATLR*
Ga0066788_100225132	3300005944	Soil	VSRAAERPPAMIEILEQPISELADLREVDPPANLVARVMTRLSEPRLPSLWQWLRRPFRLEIRLSPLTLIVLALVLAAGFVLVGATLR*
Ga0080027_100035012	3300005993	Prmafrost Soil	VSRAAERSPAMVEILEQPISELADLREVDPPANLVARVMTRLSEPRLPSLWQWLRHPFCIEIRLSPLALIGLALVLTAAFVLVGATLR*
Ga0080027_101894462	3300005993	Prmafrost Soil	LAELASLREVIPPANLVARVMIRLSEPQTPSVWQWLRRPFRIEIRLSPLALIGLALALAAAFVLVGATLR*
Ga0080027_102133872	3300005993	Prmafrost Soil	VNVESPNRRISELARLRDDVTPPPDLVARVLTRVSEPRLPSVWQWLLRPFLIEIRLSPLLLIGLALALGAAFVYVGATLR*
Ga0066789_100000448	3300005994	Soil	MSELARLRDDVTPPHDLVARVMTRVSEPRLPSLWQWLNRPFLIELRISPIVLIGLALALGTAFVYVGATIK*
Ga0070712_1007783361	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VTPPADLVARVMTRVSEPRMPSFWQWLSRPVQLELRLSPIILIGLALALAAAFIYVGATLR*
Ga0070765_1017053971	3300006176	Soil	MSELARLREDINPPPDLVARVMTRVSEPRLPSLWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATMR*
Ga0070765_1017753601	3300006176	Soil	VSPATGGPPAMIEILEQPISELAHLREVDPPVNLVARVMTRLSEPRLPSLWQWLRRPFCIEIRISPLALIGLGLVVIAAFVFVGATLR*
Ga0075522_100095262	3300006638	Arctic Peat Soil	VSPATERPPAVIEILEQPISELAHLREVDPPVNLVARVMTRLSEPRLPSVWQWLRRPFCIEIRISPLALVGLGLVVIAAFVFVGATLR*
Ga0105240_118807492	3300009093	Corn Rhizosphere	VNGVEQPRAPGGRIPELRRLRDEATPPPDLVARVMTRVSEPRLPSIWQWLRRPILVELRLSPLILIGLALALGAAFVYVGATIK*
Ga0105238_104536402	3300009551	Corn Rhizosphere	MTPEAPDHGRVAELARLREVDLPPNLVARVMTRVSEPRLPSVWQWLRRPFVIEVRISPLLLIAIALALGVAFVYVGATLK*
Ga0105238_113991502	3300009551	Corn Rhizosphere	MSELAHLRDDVIPPPDLVARVMTRVSEPRLPSLWQWLNRPFLIEIRISPIVLIGLALALGTAFVYVGATIR*
Ga0134125_1000464510	3300010371	Terrestrial Soil	VNGVDQPRAAGGRIPELRRLRDEATPPPDLVARVMTRVSEPRLPSIWQWLRRPILVELRLSPLILIGLALALGAAFIYVGATIK*
Ga0134128_101179112	3300010373	Terrestrial Soil	VNGVEQPRAPGGRIPELRRLRDEATPPPDLVARVMTRVSEPRLPSIWQWLRRPILVELRLSPMILIGLALALGAAFVYVGATIK*
Ga0126383_114921551	3300010398	Tropical Forest Soil	VSSGAQQRRATERMSELRRLRDDVTPPPDLVARVMTRVSEPRTPSFWQWMNRPVQFELRLSPIFLVGLAMALAAGFIYVGATLR*
Ga0134121_110181431	3300010401	Terrestrial Soil	VSGAEHRRPTERMTELRRLQDDVRPPPDLVARVMTRVSEPRMPSFWQWLNRPVQLEMRLSPIFLIGLALAL
Ga0126359_10028191	3300010869	Boreal Forest Soil	MPSMIDILEQPISELAHLREVDPPANLVARVMTRLSEPRLPSLWQWLRRPFCIEIRLSPLAVIGLALVLTAAFVFVGATLR*
Ga0126359_11343372	3300010869	Boreal Forest Soil	MSELARLRDDVTPPPDLVARVMTRVSEPRLPSLWQWLNRPLLIEIRISPIVIIGLALALGTAFVYVGATIR*
Ga0164309_105475742	3300012984	Soil	MSELARLRDDVIPPPDLVARVMTRVSEPRLPSVWQWLNRPFLIEIRISPIVLIGLALALGTAFVYVGATIR*
Ga0157369_113750321	3300013105	Corn Rhizosphere	VSGAEHRRAAERIPELRRLRDDVAPPPDLVARVMTRVSEPRMPSFWQWLNRPVQLELRLSPIFLIGLALALAAGFIYVG
Ga0157379_103947102	3300014968	Switchgrass Rhizosphere	VIPPPDLVARVMTRVSEPRLPSVWQWLNRPFLIEIRISPIVLIGLALALGTAFVYVGATIR*
Ga0193726_12729031	3300020021	Soil	VSPATDRPPAMIDILEQPISELAHLRDVVPPPNLVARVMTRLAEPRLPSLWQWLRHPFCIEIRLSPLALIGLALVLAAAFVFVGATLK
Ga0206356_106452531	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	VNADPRAQEPGRLADLAALGDVDPPPNLVARVMTRVSSEPRLPSLWQWLRRPFVIEVRISPLVLIGMALALGAAFVYVGATLR
Ga0206354_111200112	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	LVNADPRAQEPGRLADLAALGDVDPPPNLVARVMTRVSSEPRLPSLWQWLCRPFVIEVRISPLVLIGMALALGAAFVYVGATLR
Ga0210395_106221332	3300020582	Soil	MTELARLRDDVAPPPDLVARVMTRVSEPRFPSLWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIK
Ga0210396_105003582	3300021180	Soil	VWGDLVNVESPNNRISELARLRDDVTPPPDLVARVMTRVSQPRFPSLWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIR
Ga0210388_100044093	3300021181	Soil	VNVESPNNRISELARLRDDVSPPPDLVARVMTRVSEPRFPSLWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIK
Ga0210388_102159242	3300021181	Soil	MTELARLRDDVAPPPDLVARVMTRVSEPRFPSLWQWLNRPFLIEIRITPIVIIGLALALGTAFVYVGATIK
Ga0210388_112885341	3300021181	Soil	RISELARLRDDVTPPPDLVARVMTRVSEPRFPSLWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIK
Ga0213874_101612742	3300021377	Plant Roots	VTAHPQEPGRLADLARLAEVDPPPNLVARVMTRVSEPRLPSIWDWLRRPFVIEVRISPLVLIGIALALGAAFVYVGATLK
Ga0210393_106999072	3300021401	Soil	MIEILEQPISELAHLRDVDPPANLVARVMTRLSEPRLPSVWQWLRRPFCIEIRISPLALIGLGLVVIGAFVFVGATL
Ga0210393_108771952	3300021401	Soil	VNVESPNNRISELARLRDDVTPPPDLVARVMTRVSEPRFPSLWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIK
Ga0210385_100222602	3300021402	Soil	VSPATGGPPAMIEILEQPISELAHLRELDPPVNLVARVMTRLSEPRLPSLWQWLRRPFCIEIRISPLALIGLGLVVIAAFVFVGATLR
Ga0210385_102526672	3300021402	Soil	VNVESRNNRISELARLRDDVTPPPDLVARVMTRVSEPRFPSLWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIK
Ga0210397_105893222	3300021403	Soil	VNGVDHPRAAGGRIPELRRLRDEATPPPDLVARVMTRVSEPRLPSIWQWLRRPVLLELRLSPLVLIGLALALGAAFIYVGATIK
Ga0210389_100092853	3300021404	Soil	VNVESPNNRMSELARLRDDVTPPADLVARVMTRVSQPRFPSLWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIK
Ga0210387_100156373	3300021405	Soil	VWGHLVNVESPNNRMSELARLRDDVAPPADLVARVMTRVSEPRFPSLWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIR
Ga0210387_117209432	3300021405	Soil	VNVESRNNRISELARLRDDVTPPPDLVARVMTRVSEPRFPSLWQWMNRPFLIEIRISPIVIIGLALALGTAFVYVGATIK
Ga0210390_112980611	3300021474	Soil	NVESPNNRISELARLRDDVSPPPDLVARVMTRVSEPRFPSLWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIK
Ga0210392_106783342	3300021475	Soil	VNVESPNNRISELARLRDDVTPPPDLVARVMTRVSEPRFPSLWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIR
Ga0210402_113801371	3300021478	Soil	ARLRDDVTPPPDLVARVMTRVSEPRLPSLWQWLHRPFLIEIRISPIVIIGLALALGTAFVYVGATIK
Ga0242671_10674262	3300022714	Soil	VNVESRNNRISELARLRDDVSPPPDLVARVMTRVSEPRFPSLWQWLNRPFLIEIRITPIVIIGLALALGTAFVYVGATIK
Ga0207928_10375032	3300025494	Arctic Peat Soil	MSELARLRDDVTPPPDLVARVMTRVSEPRLPSVWQWLLRPFLIEIRLSPLLLIGLALALGAAFVYVGATLR
Ga0208220_10306532	3300025627	Arctic Peat Soil	VSPATERPPAVIEILEQPISELAHLREVDPPVNLVARVMTRLSEPRLPSVWQWLRRPFCIEIRISPLALVGLGLVVIAAFVFVGATLR
Ga0207660_110372492	3300025917	Corn Rhizosphere	VNADPRAQEPGRLADLAALGDVDPPPNLVARVMTRVSSEPRLPSLWQWLCRPFVIEVRISPLVLIGMALALGAAFVYVGATLR
Ga0207652_101481311	3300025921	Corn Rhizosphere	VNADPRAQEPGRLADLAALGDVDPPPNLVARVMTRVSSEPRLPSLWQWLLRPFVIEVRISPLVLIGMALALGAAFVYVGATLR
Ga0207694_107927122	3300025924	Corn Rhizosphere	MTPEAPDHGRVAELARLREVDLPPNLVARVMTRVSEPRLPSVWQWLRRPFVIEVRISPLLLIAIALALGVAFVYVGATLK
Ga0207700_116792382	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VSGAEHRRAAERIPELRRLRDDVAPPPDLVARVMTRVSEPRMPSFWQWLNRPVQLELRLSPIFLVGLALALAAGFIYVGATLR
Ga0207661_101256562	3300025944	Corn Rhizosphere	MSELAHLRDDVIPPPDLVARVMTRVSEPRLPSVWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIR
Ga0207702_101384592	3300026078	Corn Rhizosphere	VTSAGDPGRLDDLAGLREVDPPANLVARVMTRVSEPRLPSVWQWLRRPFVIEVRISPLLLIGIAMALGAAFVYVGATLK
Ga0207702_102928531	3300026078	Corn Rhizosphere	ARSASRAQEPGRLADLAALGDVDPPPNLVARVMTRVSSEPRLPSLWQWLRRPFVIEVRISPLVLIGMALALGAAFVYVGATLR
Ga0207702_112397792	3300026078	Corn Rhizosphere	VTGAGDPGRLDDLAGLREVEPPANLVARVMTRVSEPRLPSVWQWLRRPFVIEVRISPLLLIGIAMALGAAFVYVGATLK
Ga0207702_116080321	3300026078	Corn Rhizosphere	VNADPRAQEPGRLADLAALGDVDPPPNLVARVMTRVSSEPRLPSLWQWLCRPFVIEVRISPLVLIGMALALGAA
Ga0209863_100014786	3300026281	Prmafrost Soil	MVEILEQPISELADLREVDPPANLVARVMTRLSEPRLPSLWQWLRHPFCIEIRLSPLALIGLALVLTAAFVLVGATLR
Ga0209890_1000016814	3300026291	Soil	MSELARLRDDVTPPHDLVARVMTRVSEPRLPSLWQWLNRPFLIELRISPIVLIGLALALGTAFVYVGATIK
Ga0209060_100045907	3300027826	Surface Soil	VSTVEQPPAARGRMPELRRLRDDVTPPPDLVARVMTRVSEPRLPSIWQWLNRPVLLELRISPLVMIGLAMALGAAFVYVGATLR
Ga0209169_103396532	3300027879	Soil	VNPATGRPPAMIEILEQPISELAHLREVDPPANLVARVMTRLSEPRLPSVWQWLRRPFCIEIRISPLALIGLVAPFIFKYAA
Ga0209169_105231221	3300027879	Soil	RDEVTPPPDLVARVMTRVSEPRLPSVWQWLRRPFLIEIRISPILLIGLAMALGAAFVYVGATLR
Ga0209275_101185502	3300027884	Soil	MIEILEQPISELAHLREVDPPANLVARVMTRLSEPRLPSVWQWLRRPFCIEIRISPLALIGLGLVVIAAFVFVGATLR
Ga0209275_101462992	3300027884	Soil	MTELARLRDEVTPPPDLVARVMTRVSEPRLPSVWQWLRRPFLIEIRISPILLIGLAMALGAAFVYVGATLR
Ga0209415_103565571	3300027905	Peatlands Soil	VNGVGQPRATGRDVRISELRRLRDDVTPPPDLVARVMTRVSEPRTPSFWQWLNRPVQLEFRLSPMILIGLALALAAAFIYVGAT
Ga0265319_10421992	3300028563	Rhizosphere	VSRAAERSPAMVEILEQPISELADLREVDPPANLVARVMTRLSEPRLPSLWQWLRRPFCIEIRLSPLALIGLGLVLTAAFVFVGATLR
Ga0265319_12483191	3300028563	Rhizosphere	VNVESPNNRISELARLRDDVTLPPDLVARVMTRVSEPRLPSLWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIR
Ga0265318_101171661	3300028577	Rhizosphere	VNVESRNKRISELARLRDDVTLPPDLVARVMTRVSEPRFPSLWQWMNRPFVIEIRISPIVLIGLALALGTAFVYVGATIR
Ga0308309_105936062	3300028906	Soil	MIEILEQPISELAHLREVDPPVNLVARVMTRLSEPRLPSLWQWLRRPFCIEIRISPLALIGLGLVVIAAFVFVGATLR
Ga0308309_109138761	3300028906	Soil	MSELARLREDINPPPDLVARVMTRVSEPRLPSLWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIK
Ga0311332_106642841	3300029984	Fen	VNVESPNNRISELAHLRDEVAPPPDLVARVMTRVSEPRLPSLWQWLNRPFLIEIRISPVVIIALALALGAAFVYVGATIR
Ga0311333_102549192	3300030114	Fen	VNVESPNNRISELAHLRDDVTPPPDLVARVMTRVSEPRLPSLWQWLNRPFLIELRISPIVIIALALALGAAFVYVGATIR
Ga0170834_1086499752	3300031057	Forest Soil	VNVESRNNRISELARLRDDVTPPPDLVARVMTRVSEPRFPSLWQWMNRPFLIEIRISPIVIIGLALALGTAFVYVGATIR
Ga0170823_133430651	3300031128	Forest Soil	RISELARLRDDVTPPPDLVARVMTRVSEPRFPSLWQWMNRPFLIEIRISPIVIIGLALALGTAFVYVGATIR
Ga0265339_101521002	3300031249	Rhizosphere	VESPNHRISELARLRDDVAPPPDLVARVMTRVSEPRLPSLWQWLNRPFLIEIRISPIVIIGLALALGTAFVYVGATIR
Ga0265313_100847252	3300031595	Rhizosphere	LNPAADRPPAMIEILEQPISELAHLREVDPPANLVARVMTRLSEPRLPSVWQWLRRPFCIEIRISPLALIGLGLVAIAAFVFVGATLR
Ga0265313_104376142	3300031595	Rhizosphere	VPAAPDGRIAELARLREVKPPPDLVARVMTRLSEPRLPSVWQWLRRPFLIEIRISPLVLIGLALGVGAAFVYVGATLR
Ga0318574_109008671	3300031680	Soil	VTPDRRIDELARLREVEPPPNLVARVMTRVSEPRLPSLWQWLRRPFVIEVRISPLLLIAIAFALGVAFV
Ga0308175_1030065351	3300031938	Soil	GAHGGDVVSGAEQRRAAERSELRRLRDDVTPPPDLVARVMTRVSEPRMPSFWQWLNRPVQLELRLSPIFLVGLALALAAGFIYVGATLR
Ga0308174_103425732	3300031939	Soil	VNGVDQPRAAGGRIPELRRLRDEATPPPDLVARVMTRVSEPRLPSIWQWLRRPILVELRLSPLILIGLALALGAAFVYVGATIK
Ga0308173_116248461	3300032074	Soil	VSGAEQRRAAERSELRRLRDDVTPPPDLVARVMTRVSEPRMPSFWQWLNRPVQLELRLSPIFLVGLALALAAGFIYVGATLR
Ga0335085_116826242	3300032770	Soil	VSGAEPGRLHDQRIAELRRLRDDVTPPPDLVARVMTRVSEPRVPSFWQWLNRPVQLELRLSPIFLIGLAMALAAAFIYVGATLR
Ga0335069_112646732	3300032893	Soil	LSGAEQRRATERMPELRRLRDDVTPPPDLVARVMTRVSEPRMPSFWQWLNRPVQLELRLSPILLIGLALALTAAFIYVGATLR
Ga0335075_102489682	3300032896	Soil	VRVERPGPTVEAADGQIAELARLREVNPPPDLVARVMTRLSEPRLPSLWQWLRRPFLIEIRISPLVLIGLALGLGAAFVYVGATLR
Ga0335075_115783092	3300032896	Soil	PERRFVELARLREVEPPPNLVARVMTRVSEPRLPSLWQWLRRPFVIEVRISPLLVIAVALAVGVAFVYVGATLK
Ga0335083_1000364813	3300032954	Soil	VTPDRRIDELARLREVEPPPNLVARVMTRVSEPRLPSLWQWLRRPFVIEVRISPLLLIAIAFALGVAFVYVGATLR
Ga0370494_074304_548_763	3300034130	Untreated Peat Soil	MSELARLRDDVTPPHDLVARVMTRVSEPRLPSLWQWLNRPFLIEIRISPIVLIGLALALGAAFVYVGATIK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094201

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences