Basic Information | |
---|---|
Family ID | F094189 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 106 |
Average Sequence Length | 42 residues |
Representative Sequence | TVPAEIDLKGKHARVADGQKCPRCGSSLEVAVVVHIPEAA |
Number of Associated Samples | 91 |
Number of Associated Scaffolds | 106 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 33.33 % |
% of genes near scaffold ends (potentially truncated) | 0.94 % |
% of genes from short scaffolds (< 2000 bps) | 0.94 % |
Associated GOLD sequencing projects | 85 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.26 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Unclassified (97.170 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.981 % of family members) |
Environment Ontology (ENVO) | Unclassified (21.698 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (47.170 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 5.88% Coil/Unstructured: 94.12% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.26 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Wetland Freshwater Lake Hypolimnion Peatland Bog Forest Soil Bog Peatland Wetland Soil Soil Vadose Zone Soil Tropical Forest Soil Grasslands Soil Peatlands Soil Corn, Switchgrass And Miscanthus Rhizosphere Arctic Peat Soil Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Soil Untreated Peat Soil Peatland Permafrost Soil Fen Bog Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Palsa Peat Soil Plant Litter Biofilm Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Arabidopsis Rhizosphere Avena Fatua Rhizosphere Boreal Forest Soil |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
INPhiseqgaiiFebDRAFT_1058037042 | 3300000364 | Soil | MCTHTVPAQIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA* |
JGI1027J12803_1056588931 | 3300000955 | Soil | VPAEIDLKGKVPRVAKGQKCPRCGSSLEVAVVVQVPEAA* |
JGI26339J46600_100649971 | 3300003218 | Bog Forest Soil | ICTRTVPADIDLRGKYARVEQGQRCPRCGSSLDVAAVVQIPEAA* |
Ga0070674_1005429871 | 3300005356 | Miscanthus Rhizosphere | MAHCPMCTHTVPTEVDLRGKYARVAAGQKCSRCGSSLEVAVVIHV |
Ga0070673_1002949561 | 3300005364 | Switchgrass Rhizosphere | THTVPAEVDLKGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA* |
Ga0070665_1010141381 | 3300005548 | Switchgrass Rhizosphere | PICTHTVPADIDIKGKIPRVTKGSKCPRCGSSLEVAVVVQVPEAA* |
Ga0066700_109633523 | 3300005559 | Soil | HTVPADIDLKGKFPRVAAGQKCSRCGSSLDVAAVIQIPEAA* |
Ga0068857_1014908273 | 3300005577 | Corn Rhizosphere | PMCTHTVPAQIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA* |
Ga0068859_1021590681 | 3300005617 | Switchgrass Rhizosphere | AEIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA* |
Ga0068864_1015391761 | 3300005618 | Switchgrass Rhizosphere | VPADIDIKGKIPRVARGAICPRCGSSLEVAVVVQVPEAA* |
Ga0075038_111709231 | 3300005650 | Permafrost Soil | TVPADIDLKGKRPRVAAGQKCVRCGSSLDVAAVIQIPEAA* |
Ga0075038_114344432 | 3300005650 | Permafrost Soil | MCTHTVAAEIDLKGKRARVAAGQKCSRCGSSLEVAVVIQIPEAA* |
Ga0070717_100719575 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | IDLKGKFPRVEPGQKCARCGSSLDVAIVIQIPEAA* |
Ga0070712_1018610933 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | PAEIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA* |
Ga0068865_1007279773 | 3300006881 | Miscanthus Rhizosphere | VDLRGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA* |
Ga0075528_102028851 | 3300006949 | Arctic Peat Soil | THTVQAQIDLKGKYARVAAGQKCARCGSSLEVAVVIQIPEAA* |
Ga0073936_103312691 | 3300009175 | Freshwater Lake Hypolimnion | THTVPAEVDVKGKKPHVIKGSKCPRCGSSLEVAVVVQVPEAA* |
Ga0105242_124549783 | 3300009176 | Miscanthus Rhizosphere | VPADIDIKGKIPRVARGAKCPRCGSSLEVAVVVQVPEAA* |
Ga0116214_14016112 | 3300009520 | Peatlands Soil | DIDLRGKYPRVTAGQKCPRCRSSLDVAVVVQIPEAA* |
Ga0115602_12323281 | 3300009587 | Wetland | CPICTHTVPAEVDLRGKRPRVAPGQRCPRCASSLDVAVIVQLPEAA* |
Ga0116121_11507621 | 3300009644 | Peatland | HCPICTHTVPADIDLRGKYPRVTSGQKCPRCGSALDVAAVVQIPEAA* |
Ga0126372_111076863 | 3300010360 | Tropical Forest Soil | ICTHTVPAEIDLKGKVPRVAKGQKCPRCGSSLEVAVVVQVPEAA* |
Ga0136449_1010750451 | 3300010379 | Peatlands Soil | DLKGRYARVASGQRCPRCSSSLDVAVVVQIPEAA* |
Ga0126344_10938921 | 3300010866 | Boreal Forest Soil | EVDIKGRIKIARVSPGQRCPRCGASLDVAVVVEIPQAA* |
Ga0150983_108352622 | 3300011120 | Forest Soil | AHCPICTHTVPAEIDLKGKYPRVASGQKCQRCGSSLEVAVVVQIPEAA* |
Ga0150983_112919901 | 3300011120 | Forest Soil | ICTHNVPADIDLKGKFARVTPGQRCPRCKSSLDVAVVIQIPEAA* |
Ga0126317_103012701 | 3300011332 | Soil | HCPMCTHTVPAEVDLRGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA* |
Ga0151652_135357862 | 3300011340 | Wetland | MCTHTVPADVDLRGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA* |
Ga0137379_112884871 | 3300012209 | Vadose Zone Soil | TVPAEIDFAGKKVRVAAGQKCPRCGSSLEVAVVVQIPEAA* |
Ga0134051_12645731 | 3300012398 | Grasslands Soil | PICTHTVPAEIDLKRKYPKVEPGQRCPRCSSSLDVAVVIQIPEAA* |
Ga0150984_1084335201 | 3300012469 | Avena Fatua Rhizosphere | DIDLRGKYPRVEAGQKCPRCGSALDVAAVIQIPEAA* |
Ga0150984_1110813403 | 3300012469 | Avena Fatua Rhizosphere | HTVPADLDLKRKFPRVEPGQRCPRCSSSLDVAVVIQIPEAA* |
Ga0157369_105868071 | 3300013105 | Corn Rhizosphere | DLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA* |
Ga0163162_102660843 | 3300013306 | Switchgrass Rhizosphere | MCTHTVPAEVDLKGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA* |
Ga0181539_12988412 | 3300014151 | Bog | MCTHTVPAEIEVKGKLARTAPGQTCARCGSSLDVAVVVQIPEAA* |
Ga0181535_100606903 | 3300014199 | Bog | MCTHTVPADVDVKGKAVRTAPGQDCPRCGSSLDVAVVVQFQEAA* |
Ga0181535_102884161 | 3300014199 | Bog | HCPICTHTVPAEIDLRGKYPRVMSGQKCPRCGSALDVAAVVQIPEAA* |
Ga0182013_100737132 | 3300014492 | Bog | MCTHTVPAEIDVKAKYVRTAPGQNCPRCGSSLDVAVVVQIPEAT* |
Ga0182013_102998501 | 3300014492 | Bog | DIDLRGKYPRVTSGQKCPRCRSALDVAAVVQIPEAA* |
Ga0182019_105196751 | 3300014498 | Fen | PICTHTVPAEIDLKGRYARVAPGQRCPRCSSSLDVAVVVQIPEAA* |
Ga0182030_104687503 | 3300014838 | Bog | MCTHTVPADVDVKGKFVRTAPGQTCPRCGSSLDVAVVVQIPEAA* |
Ga0157376_120489001 | 3300014969 | Miscanthus Rhizosphere | ADIDLTGSRPRVTKGSKCPRCGSSLEVAVVVQVPEAA* |
Ga0157376_124858601 | 3300014969 | Miscanthus Rhizosphere | HTVPADLDLKRKYPRVEPGQRCPRCSSSLDVAVVIQIPEAA* |
Ga0132256_1016957911 | 3300015372 | Arabidopsis Rhizosphere | MCTHTVPAEIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPE |
Ga0187854_103165323 | 3300017938 | Peatland | KGRYARVAPGQRCPRCSSSLDVAVVVQIPEAAQPGTYQH |
Ga0187865_12320581 | 3300018004 | Peatland | IDLKGRYARVAPGQRCPRCSSSLDVAVVVQIPEAA |
Ga0187871_106666383 | 3300018042 | Peatland | ADIDLRGKYPRVTSGQKCPRCGSALDVAAVVQIPEAA |
Ga0184584_1439601 | 3300019187 | Soil | ALCPICTHTVPAEVDLKGKLKFARVSPGQRCPRCGASLDVAVVIEVPQAA |
Ga0184585_1002631 | 3300019189 | Soil | EVDLKGKARIARVSPGQRCPRCGASLDVAVVVEIPQAA |
Ga0181508_14203491 | 3300019256 | Peatland | TVPAEIDLRGKYPRVLTGQKCPRCGSALDVAAVVQIPEAA |
Ga0181512_15918512 | 3300019270 | Peatland | CPICTHTVPAEVELKGKFKVARVSPGQRCTRCGSSLDVAVVVEIPQAA |
Ga0187798_18438281 | 3300019275 | Peatland | PAEIDLRGKYPKVSTGQTYPRCHSPLYVAAVIQIQEAA |
Ga0187800_10222403 | 3300019278 | Peatland | THTVPADIDLRGKYPRVSTGQKCPRCGSALDVAAVVQIPEAA |
Ga0206353_113938732 | 3300020082 | Corn, Switchgrass And Miscanthus Rhizosphere | MCTHTVPAQIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA |
Ga0210407_105739143 | 3300020579 | Soil | ICTHTVPADIDLKGKNPRVATGQRCTRCGASLDVAVIVQVPEAA |
Ga0210401_108303481 | 3300020583 | Soil | PLCTHNVPADIDLRGKYARVEQGQRCPRCNSSLDVAVVIQIPEAA |
Ga0187846_100096294 | 3300021476 | Biofilm | MGQVHCPICTHTVPAEIDLRGKRPLVVAGQKCMRCGSSLDVAVVVQIPEAA |
Ga0242651_10379872 | 3300022511 | Soil | VTASVDWKNKMKAARVTAGQRCPRCGSSLDVAVVVQLPQAA |
Ga0242669_11216992 | 3300022528 | Soil | HCPICTHTVPAEIDLRGKYPRVTSGQKCPRCGSPLDVAAVVQIPEAA |
Ga0242658_10661813 | 3300022530 | Soil | CTHNVEAEIDLKGKYPRVVPGQRCARCRSSLDVAVVFQYSQAA |
Ga0242660_11355623 | 3300022531 | Soil | CPICTHTVPAEIDFKGKFPRVARGQKCARCGSSLEVAVVVQVPEAA |
Ga0242660_11565761 | 3300022531 | Soil | THNVPADIELKGKFARVAPGQRCPRCKSSLDVAVVIQIPQAA |
Ga0242660_12337603 | 3300022531 | Soil | HTVPAEIDLKVKHARVAAGQKCPRCGSSLEVAVVIHILEAA |
Ga0242655_101170031 | 3300022532 | Soil | PICTHTVTAEIDLRGKYPRVASGQKCPRCGSALDVAAVIQIPEAA |
Ga0242655_101858451 | 3300022532 | Soil | HCPICTHNVLADIELKGKYPRVAAGQKCPRCGSSLDVAVVVQFSEAA |
Ga0242674_10474142 | 3300022711 | Soil | LCPICTHTVPAEVDLKGKLKFARVSPGQRCPRCGASLDVAVVIEVPQAA |
Ga0242672_11162441 | 3300022720 | Soil | PICTHTVAAEIDLRGKFPRVMNGQKCPRCGSALDVAAVVQIPEAA |
Ga0242672_11475341 | 3300022720 | Soil | ELDLRGKFPRVAEGQKCSRCGSSLDVAAVVQIPEAA |
Ga0242654_103728491 | 3300022726 | Soil | ADIELKGKYPRVAAGQKCPRCGSSLDVAVVVQFSEAA |
Ga0224557_12905843 | 3300023101 | Soil | IYLKGRRARVAPGQRCPRCSSSLDVAVVVQIPEAA |
Ga0208716_10357483 | 3300025548 | Arctic Peat Soil | PMCTHTVPAEIDLKGKYARTAPGQTCPRCRSSLDVAAVVQIPEAA |
Ga0209385_12145791 | 3300025650 | Arctic Peat Soil | MCTHTVPADLDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA |
Ga0209484_101679833 | 3300025829 | Arctic Peat Soil | THTVQAQIDLKGKYARVAAGQKCARCGSSLEVAVVIQIPEAA |
Ga0207651_102033293 | 3300025960 | Switchgrass Rhizosphere | THTVPAEVDLKGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA |
Ga0207703_122676732 | 3300026035 | Switchgrass Rhizosphere | VDLRGKYARVAAGQKCPHCGSSLEVAVVILVPEAA |
Ga0209689_13462073 | 3300027748 | Soil | HTVPADIDLKGKFPRVAAGQKCSRCGSSLDVAAVIQIPEAA |
Ga0311355_118712361 | 3300030580 | Palsa | AEVDLKGKLKFARVSPGQRCPRCGASLDVAVVIEVPQAA |
Ga0311354_102109231 | 3300030618 | Palsa | PICTHTVPAEVDLKGKLKFARVSPGQRCPRCGASLDVAVVIEVPQAA |
Ga0265461_113353301 | 3300030743 | Soil | VPAEVDLKGKLKFARVSPGQRCPRCGAPLDVAVVIEIPQAA |
Ga0138302_16659131 | 3300030937 | Soil | HTVPAEIDLRGKYARVAAGQKCPRCHSALDVAAVVQIPEAA |
Ga0308189_103069613 | 3300031058 | Soil | AEVNLKGKTARVAPGQKCPRCTASLDVAVVVEVPEAA |
Ga0170823_139435312 | 3300031128 | Forest Soil | VTASVDWKNKMKAARVTQGQRCPRCGSSLDVAVVVQLPQAA |
Ga0308194_103857672 | 3300031421 | Soil | ICTHTVPADVELKGKVARVATGTKCPRCGSSLEVAVVV |
Ga0170820_134314181 | 3300031446 | Forest Soil | PICTHNVLADIELKGKYPRVAAGQKCPRCGSSLDVAVVVQYSEAA |
Ga0170818_1032979173 | 3300031474 | Forest Soil | AQIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA |
Ga0318541_106373333 | 3300031545 | Soil | VPADIDLRGKFARVAPGQRCPRCLSSLDVAVVVQIPEAA |
Ga0307483_10120351 | 3300031590 | Hardwood Forest Soil | TVPAEIDLKGKHARVADGQKCPRCGSSLEVAVVVHIPEAA |
Ga0310686_1074423151 | 3300031708 | Soil | VPAEVDLKGKLKFARVSPGQRCTRCGASLDVAVVIEVPQAA |
Ga0310686_1161288111 | 3300031708 | Soil | LCPICTHTVPAEVDLKGKARIARVSPGQRCPRCGASLDVAVVVEIPQAA |
Ga0310686_1166620922 | 3300031708 | Soil | PAEIDLKGKLKFARVSPGQRCSRCGASLDVAVVIEIPQAA |
Ga0316049_1061703 | 3300031866 | Soil | ALCPICTHTVPAEVDLKGKLKFARVSPGQRCTRCGASLDVAVVIEVPQAA |
Ga0308174_102199631 | 3300031939 | Soil | HCPMCTHTVPAEVDLRGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA |
Ga0308174_105304811 | 3300031939 | Soil | TVPADIDLKRKYPRVEPGQRCPRCSSSLDVAVVIQIPEAA |
Ga0306920_1024523641 | 3300032261 | Soil | CTHTVPAEIDFNGKKVRVAAGQKCPRCGSSLEVAVVVQIPEAA |
Ga0348332_134748812 | 3300032515 | Plant Litter | EVDLKGKQKIARVSVGQRCPRCGSSLDVAVVVEIPQAA |
Ga0335079_122611892 | 3300032783 | Soil | PAEIDLRGRRAKVAAGQRCPRCLSSLDVAVVVQIPEAA |
Ga0335078_113764683 | 3300032805 | Soil | TVPAEIDLRGKYPRVMSGQKCPRCGSALDVAAVVQIPEAA |
Ga0335078_127381351 | 3300032805 | Soil | ICTHTVPAEIDLRGKFPRVMRGQKCPRCGSALDVAAVVQIPEAA |
Ga0335081_121586881 | 3300032892 | Soil | ICTHTVPADVDYKGKGKYPRVVPGQKCPRCGSSLDVAVVVQIPEAA |
Ga0335072_105517811 | 3300032898 | Soil | THTVPAEIDLRGKSPRVASGQKCPRCGSALDVAAVVQIPEAA |
Ga0310914_102819841 | 3300033289 | Soil | VPAEIDFNGKKVRVAAGQKCPRCGSSLEVAVVVQIPEAA |
Ga0326728_106220531 | 3300033402 | Peat Soil | GHVHCPMCTHTVPAEIEVKGKLARTAPGQTCARCGSSLDVAVVVQIPEAA |
Ga0326728_109622423 | 3300033402 | Peat Soil | ADIDLKGRYARVAPGQRCPRCSSSLDVAVVVQIPEAA |
Ga0334847_036790_98_217 | 3300033826 | Soil | VQAEIDLKGKYARVAAGQKCARCGSSLEVAVIIQIPEAA |
Ga0334827_153203_2_109 | 3300034065 | Soil | IDLRGKYPRVTSGQKCPRCGSALDVAAVVQIPEAA |
Ga0316599_141999_488_634 | 3300034653 | Untreated Peat Soil | AHCPMCTHTVPAEIDLRGKHARVASGQKCPRCGSSLEVAVVIHIPEAA |
⦗Top⦘ |