NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F094189

Metagenome / Metatranscriptome Family F094189

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F094189
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 42 residues
Representative Sequence TVPAEIDLKGKHARVADGQKCPRCGSSLEVAVVVHIPEAA
Number of Associated Samples 91
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 33.33 %
% of genes near scaffold ends (potentially truncated) 0.94 %
% of genes from short scaffolds (< 2000 bps) 0.94 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (97.170 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(16.981 % of family members)
Environment Ontology (ENVO) Unclassified
(21.698 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.170 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62
1INPhiseqgaiiFebDRAFT_1058037042
2JGI1027J12803_1056588931
3JGI26339J46600_100649971
4Ga0070674_1005429871
5Ga0070673_1002949561
6Ga0070665_1010141381
7Ga0066700_109633523
8Ga0068857_1014908273
9Ga0068859_1021590681
10Ga0068864_1015391761
11Ga0075038_111709231
12Ga0075038_114344432
13Ga0070717_100719575
14Ga0070712_1018610933
15Ga0068865_1007279773
16Ga0075528_102028851
17Ga0073936_103312691
18Ga0105242_124549783
19Ga0116214_14016112
20Ga0115602_12323281
21Ga0116121_11507621
22Ga0126372_111076863
23Ga0136449_1010750451
24Ga0126344_10938921
25Ga0150983_108352622
26Ga0150983_112919901
27Ga0126317_103012701
28Ga0151652_135357862
29Ga0137379_112884871
30Ga0134051_12645731
31Ga0150984_1084335201
32Ga0150984_1110813403
33Ga0157369_105868071
34Ga0163162_102660843
35Ga0181539_12988412
36Ga0181535_100606903
37Ga0181535_102884161
38Ga0182013_100737132
39Ga0182013_102998501
40Ga0182019_105196751
41Ga0182030_104687503
42Ga0157376_120489001
43Ga0157376_124858601
44Ga0132256_1016957911
45Ga0187854_103165323
46Ga0187865_12320581
47Ga0187871_106666383
48Ga0184584_1439601
49Ga0184585_1002631
50Ga0181508_14203491
51Ga0181512_15918512
52Ga0187798_18438281
53Ga0187800_10222403
54Ga0206353_113938732
55Ga0210407_105739143
56Ga0210401_108303481
57Ga0187846_100096294
58Ga0242651_10379872
59Ga0242669_11216992
60Ga0242658_10661813
61Ga0242660_11355623
62Ga0242660_11565761
63Ga0242660_12337603
64Ga0242655_101170031
65Ga0242655_101858451
66Ga0242674_10474142
67Ga0242672_11162441
68Ga0242672_11475341
69Ga0242654_103728491
70Ga0224557_12905843
71Ga0208716_10357483
72Ga0209385_12145791
73Ga0209484_101679833
74Ga0207651_102033293
75Ga0207703_122676732
76Ga0209689_13462073
77Ga0311355_118712361
78Ga0311354_102109231
79Ga0265461_113353301
80Ga0138302_16659131
81Ga0308189_103069613
82Ga0170823_139435312
83Ga0308194_103857672
84Ga0170820_134314181
85Ga0170818_1032979173
86Ga0318541_106373333
87Ga0307483_10120351
88Ga0310686_1074423151
89Ga0310686_1161288111
90Ga0310686_1166620922
91Ga0316049_1061703
92Ga0308174_102199631
93Ga0308174_105304811
94Ga0306920_1024523641
95Ga0348332_134748812
96Ga0335079_122611892
97Ga0335078_113764683
98Ga0335078_127381351
99Ga0335081_121586881
100Ga0335072_105517811
101Ga0310914_102819841
102Ga0326728_106220531
103Ga0326728_109622423
104Ga0334847_036790_98_217
105Ga0334827_153203_2_109
106Ga0316599_141999_488_634
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 5.88%    Coil/Unstructured: 94.12%
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Original

Variant

510152025303540TVPAEIDLKGKHARVADGQKCPRCGSSLEVAVVVHIPEAASequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
2.8%97.2%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Wetland
Freshwater Lake Hypolimnion
Peatland
Bog Forest Soil
Bog
Peatland
Wetland
Soil
Soil
Vadose Zone Soil
Tropical Forest Soil
Grasslands Soil
Peatlands Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Arctic Peat Soil
Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Soil
Untreated Peat Soil
Peatland
Permafrost Soil
Fen
Bog
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Palsa
Peat Soil
Plant Litter
Biofilm
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Arabidopsis Rhizosphere
Avena Fatua Rhizosphere
Boreal Forest Soil
4.7%2.8%7.5%3.8%3.8%17.0%2.8%4.7%2.8%2.8%2.8%2.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10580370423300000364SoilMCTHTVPAQIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA*
JGI1027J12803_10565889313300000955SoilVPAEIDLKGKVPRVAKGQKCPRCGSSLEVAVVVQVPEAA*
JGI26339J46600_1006499713300003218Bog Forest SoilICTRTVPADIDLRGKYARVEQGQRCPRCGSSLDVAAVVQIPEAA*
Ga0070674_10054298713300005356Miscanthus RhizosphereMAHCPMCTHTVPTEVDLRGKYARVAAGQKCSRCGSSLEVAVVIHV
Ga0070673_10029495613300005364Switchgrass RhizosphereTHTVPAEVDLKGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA*
Ga0070665_10101413813300005548Switchgrass RhizospherePICTHTVPADIDIKGKIPRVTKGSKCPRCGSSLEVAVVVQVPEAA*
Ga0066700_1096335233300005559SoilHTVPADIDLKGKFPRVAAGQKCSRCGSSLDVAAVIQIPEAA*
Ga0068857_10149082733300005577Corn RhizospherePMCTHTVPAQIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA*
Ga0068859_10215906813300005617Switchgrass RhizosphereAEIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA*
Ga0068864_10153917613300005618Switchgrass RhizosphereVPADIDIKGKIPRVARGAICPRCGSSLEVAVVVQVPEAA*
Ga0075038_1117092313300005650Permafrost SoilTVPADIDLKGKRPRVAAGQKCVRCGSSLDVAAVIQIPEAA*
Ga0075038_1143444323300005650Permafrost SoilMCTHTVAAEIDLKGKRARVAAGQKCSRCGSSLEVAVVIQIPEAA*
Ga0070717_1007195753300006028Corn, Switchgrass And Miscanthus RhizosphereIDLKGKFPRVEPGQKCARCGSSLDVAIVIQIPEAA*
Ga0070712_10186109333300006175Corn, Switchgrass And Miscanthus RhizospherePAEIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA*
Ga0068865_10072797733300006881Miscanthus RhizosphereVDLRGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA*
Ga0075528_1020288513300006949Arctic Peat SoilTHTVQAQIDLKGKYARVAAGQKCARCGSSLEVAVVIQIPEAA*
Ga0073936_1033126913300009175Freshwater Lake HypolimnionTHTVPAEVDVKGKKPHVIKGSKCPRCGSSLEVAVVVQVPEAA*
Ga0105242_1245497833300009176Miscanthus RhizosphereVPADIDIKGKIPRVARGAKCPRCGSSLEVAVVVQVPEAA*
Ga0116214_140161123300009520Peatlands SoilDIDLRGKYPRVTAGQKCPRCRSSLDVAVVVQIPEAA*
Ga0115602_123232813300009587WetlandCPICTHTVPAEVDLRGKRPRVAPGQRCPRCASSLDVAVIVQLPEAA*
Ga0116121_115076213300009644PeatlandHCPICTHTVPADIDLRGKYPRVTSGQKCPRCGSALDVAAVVQIPEAA*
Ga0126372_1110768633300010360Tropical Forest SoilICTHTVPAEIDLKGKVPRVAKGQKCPRCGSSLEVAVVVQVPEAA*
Ga0136449_10107504513300010379Peatlands SoilDLKGRYARVASGQRCPRCSSSLDVAVVVQIPEAA*
Ga0126344_109389213300010866Boreal Forest SoilEVDIKGRIKIARVSPGQRCPRCGASLDVAVVVEIPQAA*
Ga0150983_1083526223300011120Forest SoilAHCPICTHTVPAEIDLKGKYPRVASGQKCQRCGSSLEVAVVVQIPEAA*
Ga0150983_1129199013300011120Forest SoilICTHNVPADIDLKGKFARVTPGQRCPRCKSSLDVAVVIQIPEAA*
Ga0126317_1030127013300011332SoilHCPMCTHTVPAEVDLRGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA*
Ga0151652_1353578623300011340WetlandMCTHTVPADVDLRGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA*
Ga0137379_1128848713300012209Vadose Zone SoilTVPAEIDFAGKKVRVAAGQKCPRCGSSLEVAVVVQIPEAA*
Ga0134051_126457313300012398Grasslands SoilPICTHTVPAEIDLKRKYPKVEPGQRCPRCSSSLDVAVVIQIPEAA*
Ga0150984_10843352013300012469Avena Fatua RhizosphereDIDLRGKYPRVEAGQKCPRCGSALDVAAVIQIPEAA*
Ga0150984_11108134033300012469Avena Fatua RhizosphereHTVPADLDLKRKFPRVEPGQRCPRCSSSLDVAVVIQIPEAA*
Ga0157369_1058680713300013105Corn RhizosphereDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA*
Ga0163162_1026608433300013306Switchgrass RhizosphereMCTHTVPAEVDLKGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA*
Ga0181539_129884123300014151BogMCTHTVPAEIEVKGKLARTAPGQTCARCGSSLDVAVVVQIPEAA*
Ga0181535_1006069033300014199BogMCTHTVPADVDVKGKAVRTAPGQDCPRCGSSLDVAVVVQFQEAA*
Ga0181535_1028841613300014199BogHCPICTHTVPAEIDLRGKYPRVMSGQKCPRCGSALDVAAVVQIPEAA*
Ga0182013_1007371323300014492BogMCTHTVPAEIDVKAKYVRTAPGQNCPRCGSSLDVAVVVQIPEAT*
Ga0182013_1029985013300014492BogDIDLRGKYPRVTSGQKCPRCRSALDVAAVVQIPEAA*
Ga0182019_1051967513300014498FenPICTHTVPAEIDLKGRYARVAPGQRCPRCSSSLDVAVVVQIPEAA*
Ga0182030_1046875033300014838BogMCTHTVPADVDVKGKFVRTAPGQTCPRCGSSLDVAVVVQIPEAA*
Ga0157376_1204890013300014969Miscanthus RhizosphereADIDLTGSRPRVTKGSKCPRCGSSLEVAVVVQVPEAA*
Ga0157376_1248586013300014969Miscanthus RhizosphereHTVPADLDLKRKYPRVEPGQRCPRCSSSLDVAVVIQIPEAA*
Ga0132256_10169579113300015372Arabidopsis RhizosphereMCTHTVPAEIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPE
Ga0187854_1031653233300017938PeatlandKGRYARVAPGQRCPRCSSSLDVAVVVQIPEAAQPGTYQH
Ga0187865_123205813300018004PeatlandIDLKGRYARVAPGQRCPRCSSSLDVAVVVQIPEAA
Ga0187871_1066663833300018042PeatlandADIDLRGKYPRVTSGQKCPRCGSALDVAAVVQIPEAA
Ga0184584_14396013300019187SoilALCPICTHTVPAEVDLKGKLKFARVSPGQRCPRCGASLDVAVVIEVPQAA
Ga0184585_10026313300019189SoilEVDLKGKARIARVSPGQRCPRCGASLDVAVVVEIPQAA
Ga0181508_142034913300019256PeatlandTVPAEIDLRGKYPRVLTGQKCPRCGSALDVAAVVQIPEAA
Ga0181512_159185123300019270PeatlandCPICTHTVPAEVELKGKFKVARVSPGQRCTRCGSSLDVAVVVEIPQAA
Ga0187798_184382813300019275PeatlandPAEIDLRGKYPKVSTGQTYPRCHSPLYVAAVIQIQEAA
Ga0187800_102224033300019278PeatlandTHTVPADIDLRGKYPRVSTGQKCPRCGSALDVAAVVQIPEAA
Ga0206353_1139387323300020082Corn, Switchgrass And Miscanthus RhizosphereMCTHTVPAQIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA
Ga0210407_1057391433300020579SoilICTHTVPADIDLKGKNPRVATGQRCTRCGASLDVAVIVQVPEAA
Ga0210401_1083034813300020583SoilPLCTHNVPADIDLRGKYARVEQGQRCPRCNSSLDVAVVIQIPEAA
Ga0187846_1000962943300021476BiofilmMGQVHCPICTHTVPAEIDLRGKRPLVVAGQKCMRCGSSLDVAVVVQIPEAA
Ga0242651_103798723300022511SoilVTASVDWKNKMKAARVTAGQRCPRCGSSLDVAVVVQLPQAA
Ga0242669_112169923300022528SoilHCPICTHTVPAEIDLRGKYPRVTSGQKCPRCGSPLDVAAVVQIPEAA
Ga0242658_106618133300022530SoilCTHNVEAEIDLKGKYPRVVPGQRCARCRSSLDVAVVFQYSQAA
Ga0242660_113556233300022531SoilCPICTHTVPAEIDFKGKFPRVARGQKCARCGSSLEVAVVVQVPEAA
Ga0242660_115657613300022531SoilTHNVPADIELKGKFARVAPGQRCPRCKSSLDVAVVIQIPQAA
Ga0242660_123376033300022531SoilHTVPAEIDLKVKHARVAAGQKCPRCGSSLEVAVVIHILEAA
Ga0242655_1011700313300022532SoilPICTHTVTAEIDLRGKYPRVASGQKCPRCGSALDVAAVIQIPEAA
Ga0242655_1018584513300022532SoilHCPICTHNVLADIELKGKYPRVAAGQKCPRCGSSLDVAVVVQFSEAA
Ga0242674_104741423300022711SoilLCPICTHTVPAEVDLKGKLKFARVSPGQRCPRCGASLDVAVVIEVPQAA
Ga0242672_111624413300022720SoilPICTHTVAAEIDLRGKFPRVMNGQKCPRCGSALDVAAVVQIPEAA
Ga0242672_114753413300022720SoilELDLRGKFPRVAEGQKCSRCGSSLDVAAVVQIPEAA
Ga0242654_1037284913300022726SoilADIELKGKYPRVAAGQKCPRCGSSLDVAVVVQFSEAA
Ga0224557_129058433300023101SoilIYLKGRRARVAPGQRCPRCSSSLDVAVVVQIPEAA
Ga0208716_103574833300025548Arctic Peat SoilPMCTHTVPAEIDLKGKYARTAPGQTCPRCRSSLDVAAVVQIPEAA
Ga0209385_121457913300025650Arctic Peat SoilMCTHTVPADLDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA
Ga0209484_1016798333300025829Arctic Peat SoilTHTVQAQIDLKGKYARVAAGQKCARCGSSLEVAVVIQIPEAA
Ga0207651_1020332933300025960Switchgrass RhizosphereTHTVPAEVDLKGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA
Ga0207703_1226767323300026035Switchgrass RhizosphereVDLRGKYARVAAGQKCPHCGSSLEVAVVILVPEAA
Ga0209689_134620733300027748SoilHTVPADIDLKGKFPRVAAGQKCSRCGSSLDVAAVIQIPEAA
Ga0311355_1187123613300030580PalsaAEVDLKGKLKFARVSPGQRCPRCGASLDVAVVIEVPQAA
Ga0311354_1021092313300030618PalsaPICTHTVPAEVDLKGKLKFARVSPGQRCPRCGASLDVAVVIEVPQAA
Ga0265461_1133533013300030743SoilVPAEVDLKGKLKFARVSPGQRCPRCGAPLDVAVVIEIPQAA
Ga0138302_166591313300030937SoilHTVPAEIDLRGKYARVAAGQKCPRCHSALDVAAVVQIPEAA
Ga0308189_1030696133300031058SoilAEVNLKGKTARVAPGQKCPRCTASLDVAVVVEVPEAA
Ga0170823_1394353123300031128Forest SoilVTASVDWKNKMKAARVTQGQRCPRCGSSLDVAVVVQLPQAA
Ga0308194_1038576723300031421SoilICTHTVPADVELKGKVARVATGTKCPRCGSSLEVAVVV
Ga0170820_1343141813300031446Forest SoilPICTHNVLADIELKGKYPRVAAGQKCPRCGSSLDVAVVVQYSEAA
Ga0170818_10329791733300031474Forest SoilAQIDLKGKHARVAAGQKCPRCGSSLEVAVVIHIPEAA
Ga0318541_1063733333300031545SoilVPADIDLRGKFARVAPGQRCPRCLSSLDVAVVVQIPEAA
Ga0307483_101203513300031590Hardwood Forest SoilTVPAEIDLKGKHARVADGQKCPRCGSSLEVAVVVHIPEAA
Ga0310686_10744231513300031708SoilVPAEVDLKGKLKFARVSPGQRCTRCGASLDVAVVIEVPQAA
Ga0310686_11612881113300031708SoilLCPICTHTVPAEVDLKGKARIARVSPGQRCPRCGASLDVAVVVEIPQAA
Ga0310686_11666209223300031708SoilPAEIDLKGKLKFARVSPGQRCSRCGASLDVAVVIEIPQAA
Ga0316049_10617033300031866SoilALCPICTHTVPAEVDLKGKLKFARVSPGQRCTRCGASLDVAVVIEVPQAA
Ga0308174_1021996313300031939SoilHCPMCTHTVPAEVDLRGKYARVAAGQKCPRCGSSLEVAVVIHVPEAA
Ga0308174_1053048113300031939SoilTVPADIDLKRKYPRVEPGQRCPRCSSSLDVAVVIQIPEAA
Ga0306920_10245236413300032261SoilCTHTVPAEIDFNGKKVRVAAGQKCPRCGSSLEVAVVVQIPEAA
Ga0348332_1347488123300032515Plant LitterEVDLKGKQKIARVSVGQRCPRCGSSLDVAVVVEIPQAA
Ga0335079_1226118923300032783SoilPAEIDLRGRRAKVAAGQRCPRCLSSLDVAVVVQIPEAA
Ga0335078_1137646833300032805SoilTVPAEIDLRGKYPRVMSGQKCPRCGSALDVAAVVQIPEAA
Ga0335078_1273813513300032805SoilICTHTVPAEIDLRGKFPRVMRGQKCPRCGSALDVAAVVQIPEAA
Ga0335081_1215868813300032892SoilICTHTVPADVDYKGKGKYPRVVPGQKCPRCGSSLDVAVVVQIPEAA
Ga0335072_1055178113300032898SoilTHTVPAEIDLRGKSPRVASGQKCPRCGSALDVAAVVQIPEAA
Ga0310914_1028198413300033289SoilVPAEIDFNGKKVRVAAGQKCPRCGSSLEVAVVVQIPEAA
Ga0326728_1062205313300033402Peat SoilGHVHCPMCTHTVPAEIEVKGKLARTAPGQTCARCGSSLDVAVVVQIPEAA
Ga0326728_1096224233300033402Peat SoilADIDLKGRYARVAPGQRCPRCSSSLDVAVVVQIPEAA
Ga0334847_036790_98_2173300033826SoilVQAEIDLKGKYARVAAGQKCARCGSSLEVAVIIQIPEAA
Ga0334827_153203_2_1093300034065SoilIDLRGKYPRVTSGQKCPRCGSALDVAAVVQIPEAA
Ga0316599_141999_488_6343300034653Untreated Peat SoilAHCPMCTHTVPAEIDLRGKHARVASGQKCPRCGSSLEVAVVIHIPEAA


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