Metagenome / Metatranscriptome Family F094158

Basic Information
Family ID	F094158
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	45 residues
Representative Sequence	MVQLPKLSRRARWAVPAGALVVTGGVLAGSLISVAQAAPGLPAR
Number of Associated Samples	102
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.17 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	90.57 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Most Common Taxonomy
Group	Bacteria (92.453 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.528 % of family members)
Environment Ontology (ENVO)	Unclassified (27.358 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.623 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 38.89% β-sheet: 0.00% Coil/Unstructured: 61.11%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00072	Response_reg	43.40
PF00486	Trans_reg_C	33.02
PF00106	adh_short	4.72
PF01040	UbiA	4.72
PF02518	HATPase_c	4.72
PF00672	HAMP	0.94
PF11706	zf-CGNR	0.94
PF01751	Toprim	0.94
PF14559	TPR_19	0.94
PF02965	Met_synt_B12	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1410	Methionine synthase I, cobalamin-binding domain	Amino acid transport and metabolism [E]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.45 %
Unclassified	root	N/A	7.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.45 %
Unclassified	root	N/A	7.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.45 %
Unclassified	root	N/A	7.55 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	85.85 %
Unclassified	root	N/A	7.55 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	82.08 %
Unclassified	root	N/A	7.55 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	70.75 %
Unclassified	root	N/A	7.55 %

Name	Rank	Taxonomy	Distribution
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	35.85 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	12.26 %
Unclassified	root	N/A	7.55 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
Jiangellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales	1.89 %

Name	Rank	Taxonomy	Distribution
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	35.85 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	8.49 %
Unclassified	root	N/A	7.55 %
Jiangellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae	1.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %

Name	Rank	Taxonomy	Distribution
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	35.85 %
Unclassified	root	N/A	7.55 %
Streptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium	1.89 %
Jiangella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella	1.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
Microbispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.55 %
Streptosporangium roseum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	1.89 %
Jiangella alba	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella alba	1.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.94 %
Microbispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.55 %
Streptosporangium roseum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	1.89 %
Jiangella alba	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella alba	1.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.89 %
Streptomyces sp. NRRL S-1777	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. NRRL S-1777	0.94 %
Microbispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10355003	Not Available	898	Open in IMG/M
3300001991\|JGI24743J22301_10152065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	519	Open in IMG/M
3300003505\|JGIcombinedJ51221_10295043	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300003505\|JGIcombinedJ51221_10308450	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300005168\|Ga0066809_10226446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	514	Open in IMG/M
3300005187\|Ga0066675_10324550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1119	Open in IMG/M
3300005332\|Ga0066388_105064534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	669	Open in IMG/M
3300005436\|Ga0070713_102403743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	509	Open in IMG/M
3300005445\|Ga0070708_101674266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	591	Open in IMG/M
3300005536\|Ga0070697_100120785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2192	Open in IMG/M
3300005537\|Ga0070730_10867804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M
3300005548\|Ga0070665_100131567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2504	Open in IMG/M
3300005563\|Ga0068855_101318571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	746	Open in IMG/M
3300005586\|Ga0066691_10757987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	573	Open in IMG/M
3300006028\|Ga0070717_12113929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	506	Open in IMG/M
3300006032\|Ga0066696_10289591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1063	Open in IMG/M
3300006046\|Ga0066652_100886826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	851	Open in IMG/M
3300006052\|Ga0075029_100916507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	602	Open in IMG/M
3300006102\|Ga0075015_100233985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	990	Open in IMG/M
3300006176\|Ga0070765_101000051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	791	Open in IMG/M
3300006577\|Ga0074050_11299473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	534	Open in IMG/M
3300006881\|Ga0068865_100092769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2194	Open in IMG/M
3300007076\|Ga0075435_101020319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	722	Open in IMG/M
3300009623\|Ga0116133_1049895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1037	Open in IMG/M
3300010159\|Ga0099796_10337449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	647	Open in IMG/M
3300010398\|Ga0126383_10678916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1107	Open in IMG/M
3300012189\|Ga0137388_12048498	Not Available	500	Open in IMG/M
3300012198\|Ga0137364_10502507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	911	Open in IMG/M
3300012203\|Ga0137399_10188048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1670	Open in IMG/M
3300012205\|Ga0137362_10778980	All Organisms → cellular organisms → Bacteria → Terrabacteria group	820	Open in IMG/M
3300012491\|Ga0157329_1047703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella alba	500	Open in IMG/M
3300012948\|Ga0126375_12094768	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300015357\|Ga0134072_10215251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	673	Open in IMG/M
3300016270\|Ga0182036_10527790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	938	Open in IMG/M
3300016341\|Ga0182035_11744684	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300016357\|Ga0182032_10335317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1205	Open in IMG/M
3300017972\|Ga0187781_10962085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	623	Open in IMG/M
3300017995\|Ga0187816_10556017	Not Available	517	Open in IMG/M
3300017999\|Ga0187767_10203799	Not Available	626	Open in IMG/M
3300018468\|Ga0066662_10824589	Not Available	903	Open in IMG/M
3300020199\|Ga0179592_10075287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1547	Open in IMG/M
3300021362\|Ga0213882_10184556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella alba	859	Open in IMG/M
3300021384\|Ga0213876_10359195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	775	Open in IMG/M
3300021433\|Ga0210391_10288166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1289	Open in IMG/M
3300021439\|Ga0213879_10269451	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300021478\|Ga0210402_10344779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1381	Open in IMG/M
3300022840\|Ga0224549_1010547	Not Available	1344	Open in IMG/M
3300024271\|Ga0224564_1011039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1529	Open in IMG/M
3300024288\|Ga0179589_10328781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	691	Open in IMG/M
3300025905\|Ga0207685_10078898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1357	Open in IMG/M
3300025907\|Ga0207645_10682968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	698	Open in IMG/M
3300025912\|Ga0207707_10815961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	776	Open in IMG/M
3300025913\|Ga0207695_11023385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	706	Open in IMG/M
3300025915\|Ga0207693_10150983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1827	Open in IMG/M
3300025916\|Ga0207663_10930281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	696	Open in IMG/M
3300026023\|Ga0207677_10922592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	788	Open in IMG/M
3300026075\|Ga0207708_10026496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4388	Open in IMG/M
3300026277\|Ga0209350_1051448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1193	Open in IMG/M
3300026494\|Ga0257159_1100650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	507	Open in IMG/M
3300026551\|Ga0209648_10080762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2715	Open in IMG/M
3300027173\|Ga0208097_1004404	Not Available	1430	Open in IMG/M
3300027824\|Ga0209040_10541110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	508	Open in IMG/M
3300028717\|Ga0307298_10118966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	757	Open in IMG/M
3300028718\|Ga0307307_10090361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	926	Open in IMG/M
3300028759\|Ga0302224_10056814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1469	Open in IMG/M
3300028808\|Ga0302228_10339277	Not Available	670	Open in IMG/M
3300028881\|Ga0307277_10005749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4771	Open in IMG/M
3300029943\|Ga0311340_10207767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1963	Open in IMG/M
3300029951\|Ga0311371_12145761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	585	Open in IMG/M
3300030007\|Ga0311338_10573589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1166	Open in IMG/M
3300030524\|Ga0311357_10400545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1295	Open in IMG/M
3300030706\|Ga0310039_10081627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1376	Open in IMG/M
3300031236\|Ga0302324_101697716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	808	Open in IMG/M
3300031236\|Ga0302324_101771553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	786	Open in IMG/M
3300031543\|Ga0318516_10171330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1249	Open in IMG/M
3300031572\|Ga0318515_10695450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	538	Open in IMG/M
3300031640\|Ga0318555_10112694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1440	Open in IMG/M
3300031640\|Ga0318555_10277061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	907	Open in IMG/M
3300031679\|Ga0318561_10788849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	522	Open in IMG/M
3300031681\|Ga0318572_10364055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	858	Open in IMG/M
3300031708\|Ga0310686_119218785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	886	Open in IMG/M
3300031723\|Ga0318493_10208970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1032	Open in IMG/M
3300031724\|Ga0318500_10708515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	513	Open in IMG/M
3300031747\|Ga0318502_10065373	All Organisms → cellular organisms → Bacteria	1949	Open in IMG/M
3300031748\|Ga0318492_10196753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1030	Open in IMG/M
3300031770\|Ga0318521_10350798	All Organisms → cellular organisms → Bacteria → Terrabacteria group	874	Open in IMG/M
3300031777\|Ga0318543_10284431	All Organisms → cellular organisms → Bacteria → Terrabacteria group	739	Open in IMG/M
3300031781\|Ga0318547_11049389	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300031795\|Ga0318557_10363617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	665	Open in IMG/M
3300031797\|Ga0318550_10205464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	953	Open in IMG/M
3300031797\|Ga0318550_10657895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	502	Open in IMG/M
3300031805\|Ga0318497_10448263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	723	Open in IMG/M
3300031890\|Ga0306925_10036637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5047	Open in IMG/M
3300031910\|Ga0306923_10425573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1509	Open in IMG/M
3300031947\|Ga0310909_11200529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	613	Open in IMG/M
3300032009\|Ga0318563_10706771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	541	Open in IMG/M
3300032039\|Ga0318559_10115141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1202	Open in IMG/M
3300032043\|Ga0318556_10753477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	506	Open in IMG/M
3300032060\|Ga0318505_10496394	All Organisms → cellular organisms → Bacteria → Terrabacteria group	576	Open in IMG/M
3300032066\|Ga0318514_10751738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	518	Open in IMG/M
3300032076\|Ga0306924_11485332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	719	Open in IMG/M
3300032160\|Ga0311301_10094911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5908	Open in IMG/M
3300032174\|Ga0307470_11791106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	519	Open in IMG/M
3300032805\|Ga0335078_10044608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. NRRL S-1777	6571	Open in IMG/M
3300032895\|Ga0335074_10254695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora	2061	Open in IMG/M
3300032954\|Ga0335083_11395713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	535	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.57%
Host-Associated	Host-Associated	9.43%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.85%
Plants	Host-Associated → Plants	9.43%
Aquatic	Environmental → Aquatic	4.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.42%
Peat	Environmental → Terrestrial → Peat	8.49%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.77%
Freshwater	Environmental → Aquatic → Freshwater	2.83%
Sediment	Environmental → Aquatic → Sediment	1.89%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.94%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.55%
Loam	Environmental → Terrestrial → Soil → Loam	14.15%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	8.49%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.72%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.72%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.89%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.13%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.49%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	8.49%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.66%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.94%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.53%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.55%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.89%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.94%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.94%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.94%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012491	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610	Host-Associated	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022840	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094158

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_103550031	3300001593	Forest Soil	MFAIPRRARWAVPAGALVITGAIMAGSLISVAQAAPALPSRTPAQ
JGI24743J22301_101520651	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQA
JGIcombinedJ51221_102950432	3300003505	Forest Soil	MVAGAKLPRRARWAVPAAALVITGGVLAGSLISAAQAAPG
JGIcombinedJ51221_103084501	3300003505	Forest Soil	MAGVPKLSRRARWAVPVGALVVTGAVMAGSLISVAQASPGLPPR
Ga0066809_102264462	3300005168	Soil	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLP
Ga0066675_103245503	3300005187	Soil	MIQASKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLP
Ga0066388_1050645342	3300005332	Tropical Forest Soil	MVQVPKLSRRARWALPAGALVITGGVLAGSLISAAQAAPGLPPRTAAQ
Ga0070713_1024037431	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLPARTAAQL
Ga0070708_1016742662	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLPAR
Ga0070697_1001207853	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLPARTAAQLLAEVADSTPPPLT
Ga0070730_108678041	3300005537	Surface Soil	MSSRRARWAVPAGALVVTGGVLAGTLISSAQATPGLPARTAAQLLAEVADS
Ga0070665_1001315671	3300005548	Switchgrass Rhizosphere	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLPARTA
Ga0068855_1013185712	3300005563	Corn Rhizosphere	MTQVPKLSRRARWAIPAGALVVTGGVLAGTLISSAQAAPGLPARTAAQLLAEVADST
Ga0066691_107579871	3300005586	Soil	MTQVPKLSRRSRWAIPAGALVVTGGILAGTLISSAQAAPGLPARTAAQLLAEVADSTTPP
Ga0070717_121139292	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSSRRARWAVPAGALVVTGGVLAGSLISSASAAPGLPT
Ga0066696_102895911	3300006032	Soil	MTQVPKLSRRSRWAIPAGALVVTGGILAGTLISSAQAAP
Ga0066652_1008868261	3300006046	Soil	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLPARTAAQ
Ga0075029_1009165071	3300006052	Watersheds	MAGVPKLSRRARWAVPVGVLVITGAVMAGSLISVAQASP
Ga0075015_1002339851	3300006102	Watersheds	MVQVPRLSRRARWAVPAGVLVITGGVMAGSLISVAQAAPGLPA
Ga0070765_1010000511	3300006176	Soil	MVGVPRLSRRARWAVPAGALVITGGVIAGSVISVAQAAPGLPAKTAAQLLAE
Ga0074050_112994731	3300006577	Soil	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLPAHTAAQLLAEVA
Ga0068865_1000927693	3300006881	Miscanthus Rhizosphere	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLPARTAAQLLAEVADST
Ga0075435_1010203191	3300007076	Populus Rhizosphere	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLPA
Ga0116133_10498951	3300009623	Peatland	MVQVPRLSSRRARWAVPAGALVVTGGILAGSLISAAQATPGLPARTSAQLLAQVA
Ga0099796_103374491	3300010159	Vadose Zone Soil	MTQVPKLSRRARWAIPAGALVVTGGVLAGTLISSAQAAPGLPARTAAQLLAEV
Ga0126383_106789162	3300010398	Tropical Forest Soil	MSRRARWAVPAAALVVTGGVLAGSLISVAQAAPGLPA
Ga0137388_120484981	3300012189	Vadose Zone Soil	MNPMLRLSRRARWAVPGGVLAVTAAITAGSMITIAQ
Ga0137364_105025072	3300012198	Vadose Zone Soil	MIQAPKLSRRARWAIPAGALVVTGGVLAGTLISSAQAAPGLPAR
Ga0137399_101880483	3300012203	Vadose Zone Soil	MTQVPKLSRRARWAIPAGALVVTGGVLAGTLISSAQA
Ga0137362_107789802	3300012205	Vadose Zone Soil	MFGVPKLSRRAHWAVPVGVLTVTGGVMAASLISVAQAAPALPPRTPA
Ga0157329_10477032	3300012491	Arabidopsis Rhizosphere	MIQAPKLSRRARWAIPAGAVVITGGVLAGSLITAAQAAPGLPVRTAAQLLAEVA
Ga0126375_120947682	3300012948	Tropical Forest Soil	MIQAPKLSRRARWAIPGGALVITGGVLAGSLITAAQAAPGLPARTAAQLLAEVADSTPPPLTG
Ga0134072_102152511	3300015357	Grasslands Soil	MTQVPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLPARTAA
Ga0182036_105277901	3300016270	Soil	MVQVPKLSRRARWAIPAGVLVVTGGLMAGSLITAAQAAPGLPSRTA
Ga0182035_117446842	3300016341	Soil	MVQIPKLSKRARWAVPAGVLVIVGGVLAGSLISVAQAAPGLPART
Ga0182032_103353171	3300016357	Soil	MAGVPKLSRRARWAVPAGALAIIGAVLAGSLISVAQASPGLP
Ga0187781_109620851	3300017972	Tropical Peatland	MVQVPRLSRRARWAVPAGALVVVGGVMAGSLLSVAQA
Ga0187816_105560171	3300017995	Freshwater Sediment	MVQVPRLSRRARWAVPVGALVVVGGVMAGSLISVAQAAPGLPAR
Ga0187767_102037991	3300017999	Tropical Peatland	MVQLPKLSRRARWAIPAGALVVTGGVMAGSLITAAQAAPGLPARTAAQLLAEVAD
Ga0066662_108245891	3300018468	Grasslands Soil	MGFWLSRRARWAVPGAALAVTGAVMAGSLISVAQAAPALP
Ga0179592_100752873	3300020199	Vadose Zone Soil	MTQVPKLSRRARWAIPAGALVVTGGVLAGTLISSAQAAPGLPARTAAQLLAEVADSTPP
Ga0213882_101845561	3300021362	Exposed Rock	MVRIPRLSRRARWLVPAGALVITGACLAGSLISVAQAAPGLPARSPAQLLAQVADSPPPP
Ga0213876_103591951	3300021384	Plant Roots	MVRIPSLSRRARWLVPAGALVITGACLAGSLISVAQAAPGLPARSPAQLLAQVAD
Ga0210391_102881663	3300021433	Soil	MAGDPMMLVTKLSRRARWAVPVGALVVTGAVMAGSLMSAAQAAP
Ga0213879_102694511	3300021439	Bulk Soil	MVQVPRFSRRARWAVPVAALVVTGGVLAGSLISVAQ
Ga0210402_103447793	3300021478	Soil	MIQSPKLSRRARWAIPAGALVITGGVLAGSLISSAQAAPGLPARTAAQLLAEVADS
Ga0224549_10105471	3300022840	Soil	MARVPKLSRRIRWAIPVGALVVTSAVMAGSLISVAQASPGLPSRTP
Ga0224564_10110393	3300024271	Soil	MVQVSRLSRRARWAVPAGALVITGGVMAGALISVAQAAPGLPAR
Ga0179589_103287811	3300024288	Vadose Zone Soil	MTQVPKLSRRARWAIPAGALVVTGGVLAGTLISSAQAAPGLPARTAAELL
Ga0207685_100788983	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLPARTAAQLLA
Ga0207645_106829682	3300025907	Miscanthus Rhizosphere	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPG
Ga0207707_108159611	3300025912	Corn Rhizosphere	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLPVRTAAQL
Ga0207695_110233852	3300025913	Corn Rhizosphere	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLPARTAAQLLAEVAD
Ga0207693_101509831	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSSRRMRWAVPAGALVVTGGVLAGSLISSASAAPGLPTRPPAQLLAEVARA
Ga0207663_109302812	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MVAKPKLSRRARWAVPAGALVVVGGVLAGSLISVAQAAPGLAPR
Ga0207677_109225922	3300026023	Miscanthus Rhizosphere	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLPARTAAQLLAEVADSTPPP
Ga0207708_100264965	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLPARTAAQLLAE
Ga0209350_10514481	3300026277	Grasslands Soil	MTQVPKLSRRARWAIPAGALVLTGGVLAGTLISSA
Ga0257159_11006501	3300026494	Soil	MAGVPKLSRRARWAIPAGALVITGAVIGGSLITVAQASPGL
Ga0209648_100807624	3300026551	Grasslands Soil	MAGVPKLSRRTRWAIPVGALVITGAVLAGSLISVAQASP
Ga0208097_10044041	3300027173	Forest Soil	MVQIPKLSRRARWAVPAAALVITGGVIAGSLISVAQAAP
Ga0209040_105411101	3300027824	Bog Forest Soil	MAGVPKLSRRARWAVPVGVLVITGAVMAGSLISVAQ
Ga0307298_101189661	3300028717	Soil	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLPARTAAQLLAEV
Ga0307307_100903611	3300028718	Soil	MIQSPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAPGLPARTAAQLL
Ga0302224_100568141	3300028759	Palsa	MARVPKLSRRIRWAIPVGALVVTSAVMAGSLISVAQASPG
Ga0302228_103392772	3300028808	Palsa	MARVPKLSRRIRWAIPVGALVVTSAVMAGSLISVA
Ga0307277_100057491	3300028881	Soil	MIQAPKLSRRARWAIPAGALVITGGVLAGSLITAAQAAP
Ga0311340_102077673	3300029943	Palsa	MSGFPKLSRRARWAVPVAALVVTGGVMAGSLISVAQAAPA
Ga0311371_121457612	3300029951	Palsa	MSGFPKLSRRARWAVPVGALVVTGGVMAGSLISVAQAAPALPSRTPA
Ga0311338_105735892	3300030007	Palsa	MSGFPKLSRRARWAVPVAALVVTGGVMAGSLISVAQAAPALPSR
Ga0311357_104005453	3300030524	Palsa	MSGFPKLSRRARWAVPVAALVVTGGVLAGSLISVAQAAPALPSRSPAQ
Ga0310039_100816273	3300030706	Peatlands Soil	MAGVPKLSRRTRWAVPVGVLAITGAVTAGSLISVA
Ga0302324_1016977161	3300031236	Palsa	MVAVPKLSRRARWAVPAGALVITGAVLAGSLIPAAQAAPGLPSRT
Ga0302324_1017715532	3300031236	Palsa	MSGSPKLSRRARWAVPVGALVVTGGVMAGSLISVAQAAPALPSRTP
Ga0318516_101713301	3300031543	Soil	MVQVPKLSRRARWAIPAGALVITGGVLAGSLISSA
Ga0318515_106954502	3300031572	Soil	MAGVPKLSRRARWAVPIGALIITGAVMAGSLISVAQASPG
Ga0318555_101126943	3300031640	Soil	MAGVPKLSRRTRWAVPAGALAIIGAVIAGSLISVAQAS
Ga0318555_102770612	3300031640	Soil	MVHVPKLSRRARWAVPAGVLVIVGGVLAGSLISVAQAAPGL
Ga0318561_107888492	3300031679	Soil	MAGVPKLSRRARWAVPIGALIITGAVMAGSLISVAQ
Ga0318572_103640551	3300031681	Soil	MVQLPKLSRRARWAIPAGALVVTGAVLAGSLITTAQAAPGLPAR
Ga0310686_1192187851	3300031708	Soil	MIAVPKLSRRARWAVPAGALVITGAVLAGSLLPAAQAAPGLPSQTP
Ga0318493_102089701	3300031723	Soil	MAGVPKLSRRTRWAVPAGALAIIGAVIAGSLISVAQA
Ga0318500_107085151	3300031724	Soil	MVQLPKLSRRARWAIPAGALVVTGAVLAGSLITTAQAAPSLPAR
Ga0318502_100653731	3300031747	Soil	MVQLPKLSRRARWAVPAGALVVTGGVLAGSLISVAQA
Ga0318492_101967533	3300031748	Soil	MVHVPKLSRRARWAVPAGVLVIVGGVLAGSLISVAQAAPGLPAR
Ga0318521_103507981	3300031770	Soil	MVQLPKLSRRARWAVPAGALVVTGGVLAGSLISVAQAAPGLPA
Ga0318543_102844312	3300031777	Soil	MVQLPKLSRRARWAVPAGALVVTGGVLAGSLISVAQAAPGLP
Ga0318547_110493891	3300031781	Soil	MVQVPRLSRRARWAVPAGALVITGGILAGSLISVAQAAPGLPAKTPAQLLVEVADST
Ga0318557_103636172	3300031795	Soil	MAGVPKLSRRARWAVPAGALAVTGAVLAGSLISVAQA
Ga0318550_102054642	3300031797	Soil	MAGVPKLSRRARWAVPVGALAIAGAVLAGSLISVA
Ga0318550_106578951	3300031797	Soil	MVQVPKLSRRARWAIPAGALVITGGVLAGSLFSSAQAAPGLPPRTA
Ga0318497_104482633	3300031805	Soil	MVQVPTLSRRARWAVPAGALVITGGVMAGSLISVAQATPGLPAVTPA
Ga0306925_100366371	3300031890	Soil	MAGVPKLSRRARWAVPVGALAIAGAVLAGSLISVAQASPGLPP
Ga0306923_104255731	3300031910	Soil	MVQVPRLSRRARWAVPAGALVITGGILAGSLISVAQAAPGLPAKTPA
Ga0310909_112005292	3300031947	Soil	MVQLPKLSRRARWAIPAGALVVTGAVLAGSLITTAQAAPGLPARTAAQLLAE
Ga0318563_107067711	3300032009	Soil	MSRRARWAVPAGALVVTGGILAGTLISAAQAAPGLPARSPAQLLAEV
Ga0318559_101151411	3300032039	Soil	MVQVPKLSRRARWAIPAGALVITGGVLAGSLISSAQAAPGL
Ga0318556_107534771	3300032043	Soil	MVQLPKLSRRARWAIPAGALVVTGAVLAGSLITTAQAAPGLPARTAA
Ga0318505_104963941	3300032060	Soil	MVQLPKLSRRARWAVPAGALVVTGGVLAGSLISVAQAAPGLPAR
Ga0318514_107517381	3300032066	Soil	MAGVPKLSRRARWAVPAGALAIIGAVLAGSLISVA
Ga0306924_114853321	3300032076	Soil	MVQVPRLSRRARWAVPAGALVITGGILAGSLISVAQAAPGLPAKTPAQLLV
Ga0311301_100949111	3300032160	Peatlands Soil	MVQVPRLSRRARWAVPAGALVITGGVIAGSVISVAQAAPGLPARTAAELLAEV
Ga0307470_117911062	3300032174	Hardwood Forest Soil	MTQVPKLSRRARWAIPAGALVVTGGVLAGTLISSAQAAPGL
Ga0335078_100446081	3300032805	Soil	MLSVPKLSRRARWAVPVGALVVTGAVMAGSLISVAQG
Ga0335074_102546953	3300032895	Soil	VTGVLKLSRRARWAVPVGALVITGAVMAGSLISVAQASPGLPP
Ga0335083_113957131	3300032954	Soil	MVQLPKLSRRARWAIPAGALVVTGGVLAGSLITAAQATPGL

Hidden Markov Model


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