Metagenome / Metatranscriptome Family F094151

Overview

Basic Information

• Family ID: F094151
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 106
• Average Sequence Length: 60 residues
• Representative Sequence: ELNAVAESISRNFGVVFQSQILWVETLDALLGRTVGVPVKPPTELRRLHNEDDTTWA
• Number of Associated Samples: 94
• Number of Associated Scaffolds: 106

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 18.87 %
• % of genes from short scaffolds (< 2000 bps): 16.04 %
• Associated GOLD sequencing projects: 93
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (83.962 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (10.377 % of family members)
• Environment Ontology (ENVO): Unclassified (27.358 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (48.113 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 44.71%
  β-sheet: 0.00%
  Coil/Unstructured: 55.29%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00676	E1_dh	26.42
PF02779	Transket_pyr	2.83
PF12796	Ank_2	1.89
PF02817	E3_binding	1.89
PF00202	Aminotran_3	1.89
PF07927	HicA_toxin	0.94
PF01872	RibD_C	0.94
PF01066	CDP-OH_P_transf	0.94
PF13560	HTH_31	0.94
PF10396	TrmE_N	0.94
PF13620	CarboxypepD_reg	0.94
PF00107	ADH_zinc_N	0.94
PF05016	ParE_toxin	0.94
PF03449	GreA_GreB_N	0.94
PF13857	Ank_5	0.94
PF13637	Ank_4	0.94
PF00795	CN_hydrolase	0.94
PF02604	PhdYeFM_antitox	0.94
PF01541	GIY-YIG	0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0567	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes	Energy production and conversion [C]	26.42
COG1071	TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha	Energy production and conversion [C]	26.42
COG0508	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component	Energy production and conversion [C]	1.89
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.94
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	0.94
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.94
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	0.94
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	0.94
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.94
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.94
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.94
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	0.94

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.96 %
All Organisms	root	All Organisms	16.04 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.96 %
cellular organisms	root	All Organisms → cellular organisms	16.04 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.96 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	16.04 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	11.32 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.96 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	8.49 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.83 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.49 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.83 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.49 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.83 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001593|JGI12635J15846_10298235	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1009
3300005436|Ga0070713_100587137	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1057
3300005541|Ga0070733_10787247	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	639
3300009700|Ga0116217_10701218	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626
3300011269|Ga0137392_10453283	All Organisms → cellular organisms → Bacteria	1065
3300012210|Ga0137378_10065463	All Organisms → cellular organisms → Bacteria	3292
3300012685|Ga0137397_10851014	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676
3300012931|Ga0153915_10632734	All Organisms → cellular organisms → Bacteria	1232
3300014169|Ga0181531_10301200	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	981
3300014654|Ga0181525_10315602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	854
3300017943|Ga0187819_10039812	All Organisms → cellular organisms → Bacteria	2781
3300017948|Ga0187847_10490996	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680
3300018047|Ga0187859_10846304	Not Available	527
3300018062|Ga0187784_10303105	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1297
3300020581|Ga0210399_11102829	Not Available	635
3300025939|Ga0207665_11653663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507
3300026514|Ga0257168_1016463	All Organisms → cellular organisms → Bacteria	1484
3300029636|Ga0222749_10409096	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720
3300030509|Ga0302183_10003059	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7756
3300030518|Ga0302275_10309420	Not Available	864

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.85%
Aquatic	Environmental → Aquatic	14.15%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.75%
Peat	Environmental → Terrestrial → Peat	14.15%
Freshwater	Environmental → Aquatic → Freshwater	13.21%
Sediment	Environmental → Aquatic → Sediment	0.94%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.94%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.40%
Loam	Environmental → Terrestrial → Soil → Loam	16.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	14.15%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.21%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.94%

Subtype

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.75%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	14.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.21%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.55%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.55%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.77%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.94%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.38%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.49%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	8.49%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.60%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.66%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.72%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.72%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	4.72%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.89%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.94%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.94%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.94%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental
3300022881	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24	Environmental
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental
3300027514	Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN91 (SPAdes)	Environmental
3300027528	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)	Environmental
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental
3300028560	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2	Environmental
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental
3300029883	I_Bog_E2 coassembly	Environmental
3300029903	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703	Environmental
3300030044	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2	Environmental
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental
3300030399	II_Palsa_E2 coassembly	Environmental
3300030507	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2	Environmental
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental
3300030518	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2	Environmental
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental
3300030940	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)	Environmental
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1077665261	3300000955	Soil	DRELDLNTVAESISRNVGGVFQSQILWVDTLDALLGRTVGVPMQPPKEFRQIRGEDDSTWA*
JGI12635J15846_102982351	3300001593	Forest Soil	ISRNFGTVFASQILWVDTLDVLLGQTVGVPVQHPDEFRRLHKEDGTTWA*
Ga0062388_1003819163	3300004635	Bog Forest Soil	AKPVTSLQQELGKPLDLNAVAESISRNFGTVFSSQMLWVETLDALLGRAVGVPMKPPVELRQITNEDGVNWA*
Ga0070713_1005871371	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	ESISRNFGVVFQSQILWVESLHALLGQTVGVPMKRPVELRHLHKEDEAFWA*
Ga0070713_1020408901	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	SKPVTSIQKELGKQLDLNAVSESISRNFGVVFQSQILWVDTLDALLGRTVGVPMKPPANLRHLRNEDDTTWA*
Ga0066687_104732432	3300005454	Soil	GREVPLEQVAQSICRHFGVVFQSQILWVESLDALLGHSVGVPLQVPAEIRKLHNEEETFWA*
Ga0070731_109278252	3300005538	Surface Soil	VTSMQKELGPALDLNAVAESISRNFGVVFERQILWVDTLDALLGNRVGVPMKTPAEFRQIRGEDDASWA*
Ga0070733_102851131	3300005541	Surface Soil	ELDLNTVAESICRNFGVVFQSQILWVDTLDALLGHTVGVPMKPPAGLRQVHKEDDTSWA*
Ga0070733_107872472	3300005541	Surface Soil	VAESISRNFGTVFASQMLWVETLDALLGRAVGVPMKPPVELRELRKEEETNWA*
Ga0070761_109047342	3300005591	Soil	DLNAVAESISRNFGTVFSSQMLWVETVDALLGRTVGVPMKPPTELRQLRKEDDVTWA*
Ga0070762_110132892	3300005602	Soil	LDLTTVSNSISRNFGTVFSSQMLWVETIDALLGRTVGVPLQPPADLRRLHQEDDSTWA*
Ga0070763_106544032	3300005610	Soil	MKKELGRELALNTLAESISRNFGVVFQSQILWVDTLDALLGRTVGVPTVGVPMKPPSELRKIHREDDTAWA*
Ga0070764_100085968	3300005712	Soil	TVSESISRNVGTVFSSQMLWVETLDALFGRTIGVPMSRPAEFRQLHKEDDTTWA*
Ga0070766_103174993	3300005921	Soil	TSMQQQLSRPIDMNTVAESIARNFGTVFSSQILWLETLDALLGHAVSVPMRTPTELRQLHKEDDSGWA*
Ga0080026_100225451	3300005952	Permafrost Soil	AVAESISRNFGKVFSSQILWLESLDALLGQTVGVPMKLPPELRYLHTEDDTALA*
Ga0070717_106611321	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	KEFDLNSVTESISRNFGVVFQSQILWVETLDALLGHTVGVPMKPPANLLRLHKEDDPTWV
Ga0075030_1013070442	3300006162	Watersheds	TSMQQQLGKELALNAVAESISRNVGVIFQSQILWVETLDALLGRTVGVPMKTPAELRQLHKEDDTSWV*
Ga0070765_1012386941	3300006176	Soil	LDLNAVSESISRNFGTVFSRQMLWAETLDALLGRAVGVPMKPPKELRQTRNEDETTWA*
Ga0079222_105878662	3300006755	Agricultural Soil	ELDLNAVAESISRNFGVVFQSQILWVESLHSLLGQTVGVPMKRPAELRHLHKEDETFWA*
Ga0116214_11987382	3300009520	Peatlands Soil	MQQQLGHALDINAVAESISRNFGLVFQRQILWVETLDALLGRAVGVPLKPPTDLRQLHKEDETSWT*
Ga0116217_101227201	3300009700	Peatlands Soil	LDINAVAESISRNFGLVFQRQILWIETLDALLGRAVGVPLKPPTDLRQLHKEDETSWT*
Ga0116217_107012181	3300009700	Peatlands Soil	SISRNFGVVFQTQIVWVDTLDALLGRAVGVPVKPPTDLRQLHQEDDTTWA*
Ga0116219_103152001	3300009824	Peatlands Soil	QELGRELDLNAVAEAISRNFGTVFSSQMLWVETLDALFGRAVGVPMKAPAELRQIHKEDDTTWA*
Ga0126383_111015641	3300010398	Tropical Forest Soil	RELHLNAVAESISRNLGVVFQSQILWVDTLDALLGRAVGVPMKPPFELRQIHKEDDTAWA
Ga0126383_119512362	3300010398	Tropical Forest Soil	PVTSMHKELDRALDLNAVAESISRNFGVVFQSQILWVETLDALLGRTVGVPMQAPAEFRRLHGEDEIVKA*
Ga0137392_104532832	3300011269	Vadose Zone Soil	ESISRNFSTVFSSQMLWVETLDALLGRTVGVPLQVPVELRRIHHEDDPTWA*
Ga0137378_100654631	3300012210	Vadose Zone Soil	AESISRNFGTVFSSQMLWVDTLDALLGRVVGVPMQPAKELRELHEEDETAWA*
Ga0137361_110617503	3300012362	Vadose Zone Soil	ELNAVAESISRNFGVVFQSQILWVETLDALLGRTVGVPVKPPTELRRLHNEDDTTWA*
Ga0137390_110249772	3300012363	Vadose Zone Soil	LNSVAESISRNFGVVFASQMLWVETIDALLGRTIGVPLRRPTSLRQLHKEDDTTWA*
Ga0137397_108510141	3300012685	Vadose Zone Soil	AESISRNFGTVFSRQMLWVETLDALLGHTVGVPLQRPTELRQLHKEDGTTWA*
Ga0137416_115693161	3300012927	Vadose Zone Soil	RQLGHPLDLNSVAESISRNFGAVFSSQMLWVETLDAVLGPTVGVPMQRPTALRQLHKEDDTTWA*
Ga0153915_106327341	3300012931	Freshwater Wetlands	EVEQSVARNLGGVFASQVLWVETLDALLGRQVGVPMKLPAELREMHDEEEETRA*
Ga0181531_103012001	3300014169	Bog	SISRNFSKAFSTQILWLETIDALLGRTVGVPMQHPAELRQLHKGDTFWS*
Ga0181525_103156021	3300014654	Bog	AVAESISRNFGVVFQSQILWVDTLDALLGCTVGVPMKPPTELRKIRGDDETAWA*
Ga0187802_101627301	3300017822	Freshwater Sediment	QQLGKELDLNAVAESISRNVGVVFQSQILWVETLDALLGHAVGVPMKPPSELRQLHKEDDTTWA
Ga0187820_12212851	3300017924	Freshwater Sediment	TSMQQQLGKELDLNAVAESISRNVGVVFQSQILWVETLDALLGHAVGVPMKPPSELRQLHKEDDTTWA
Ga0187801_101155112	3300017933	Freshwater Sediment	PVTSMEKELGRPVDLNAVAESISRNVGVIFQSQILWVDTLDALLGRTVGVPMKPPTELRQLRKEDDQTWA
Ga0187819_100398124	3300017943	Freshwater Sediment	SESISRNCGVVFQSQILWVDTIDALLGRAVGVPMKPPAELRQLHKKEDDSAWA
Ga0187847_104909961	3300017948	Peatland	AESISRNFGVVFQSQMLSVETLDALLGRTVGVPMKPPEELRQLRNEDDTAWA
Ga0187817_106150052	3300017955	Freshwater Sediment	RELDLNAVAESISGNFGVVFQSQILWVDTLDALLGRTVGVPMKVPANLRQLHKEEDTPWA
Ga0187874_100219861	3300018019	Peatland	VTESISRNFGTVFSSQILWVDTLDALLGRAVGVPLQHPTELRQLHKDDGTTWA
Ga0187889_103576092	3300018023	Peatland	VAESISRNFGVVFQTQILWVDTLDALLGRAVGVPVKPPTDLRQLHKEDDTTWA
Ga0187859_108463041	3300018047	Peatland	ESISRNFGAVFSSQMLWVETFDALLGRTVGVPVRSPEELRKFHKEDDQTWV
Ga0187784_103031051	3300018062	Tropical Peatland	AQSISRNLGVVFQSQVLWVETLDALLGQSVGVPLKRPDDLRQIHKEDDTTWA
Ga0187769_100679323	3300018086	Tropical Peatland	LDLNAVAESISRNFGVVFQSQILWVDTLDALLGGTVGVPMQLPREFRQFHKEDGTSWA
Ga0182025_13288432	3300019786	Permafrost	MQQELGHSLDLNTVAESISRNFGTVFSSQILWVETLDALLGNTVGVPVQRPAEFRQLHKEDDTSWA
Ga0193751_10160644	3300019888	Soil	ELGRDLDLNTVAESISRNFGVVFSSQMLWVETLDALLGRTVGVPMKLPVELRDLHNEDDITWA
Ga0210399_111028291	3300020581	Soil	SISRNFGTVFSSQMLWVETLDALLGRTLGVPMEPPTELRQLNKEEDTTWA
Ga0210395_110119031	3300020582	Soil	MNAVAESISRNFGKVFSSQILWLESLDALLGQTLGVPMKPPAEVRQLHKEDDTTWA
Ga0210400_106676202	3300021170	Soil	PVTSMRQELGKPLDLNAVAESISRNFGTVFSSQMLWVDTLDALMGRTVGVPMLVPREFRQLHKDEDGSWA
Ga0210385_101409481	3300021402	Soil	LNAVAESISRNVGSVFSSQILWLDTIDALLGNSVGVPLERPAEFRQLHNEDETAWA
Ga0210383_117540182	3300021407	Soil	TSMQQQLGKSLAMNAVAESISRNFGKVFSSQILWVDTVDAIIGQTVGIPMQPPAEIRRLHKEDDKTWA
Ga0210391_114025742	3300021433	Soil	LDMNAVAESISRNFGKVFSSHMLWVETLDALLGRAVGVPTKPREELRELHKEDDTTWA
Ga0210402_101628071	3300021478	Soil	DLNPVAESISRNFGTVFSSQMLWVETLDALLGQTVGVPMKPPPELRQLHQDDDTTWA
Ga0126371_130358671	3300021560	Tropical Forest Soil	NELSRELDLNAVAESISRNFGVVFQSQILWVDTLDALLGHTVGVPMKPPSELRQIHGDDETTWA
Ga0224545_10672741	3300022881	Soil	LDLNAVAESISRNFGAVFSSQMLWVETLDALMGRAVGVPMKPPTELRQLHKEDDITWA
Ga0224556_11011261	3300024295	Soil	KELDMTAVAESISRNFSKVFSTQILWLETIDALLGRTVGVPMQHPAELRQLHKGDTFWS
Ga0207665_116536632	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	AESISRNLGVVFQSQILWVDTLDALLGRTVGVPMKPPEELRHIHKEDDTTWA
Ga0209839_101522562	3300026294	Soil	TSMRQQLGRPLDLNAVAESISRNVGVVFQSQILWVETLDALLGRAVGTPMKAPAELRQLHKEDDSTWA
Ga0257168_10164631	3300026514	Soil	ESISRNFGVVFASQMLWVETLDALLGRTLGVPLQRPTALRQLHKEDDTTWA
Ga0208338_10148412	3300027514	Soil	QQQLGRELDLNAVAESISRNFGVVFQSQILWVDTLDALLGRTIGVPMSRPTELRHLHKEDETSRA
Ga0208985_10462882	3300027528	Forest Soil	MQQQLKKELNLDTVAESISRNFGVVFQSQMLWVDTLDALLGRTVGVPMQAPNEFRHIHSDDIYRT
Ga0209115_10304992	3300027567	Forest Soil	VTSMQNELGHSLDLTMASHSISRNFGTVFSSQMLWVETIDALLGRTVGVPLQAPADLRRFHQEDDSTWA
Ga0209330_10948552	3300027619	Forest Soil	GHDLDLNAVAESISRNFGTVFQQQMLWVETLDALLGRSVGVPLRTPAELRQILTEDDTTW
Ga0209009_10597671	3300027667	Forest Soil	PVTSLRQELGKPLDLNAVAESVSRNVGTVFSSQVLWVENLDALLGRTIGVPMSRPAELRQIHKEDDTTWA
Ga0208696_100121417	3300027696	Peatlands Soil	SMQQELGKPLDLNAVAESISRNFGTVFSCQMLWVETLDALLGRTVGVPMQPPAKFRQIHKEDDTTWA
Ga0209656_101302331	3300027812	Bog Forest Soil	AVAESISRNFGTVFSSQMLWVENLDALLGRTLGVPMKAPAELRKLHREDDATWA
Ga0302144_102800951	3300028560	Bog	NAVAESISRNFGTVFSSQMLWVDTLDALLGRTVGVPMKPPAEFRQIANEDEVNWA
Ga0308309_103590581	3300028906	Soil	DLSTVAESISRNFGTVFSSQMLWVETLDALLGRTIGVPMNRPTELRRLHQEDDTAWA
Ga0308309_118549151	3300028906	Soil	QQELGRPLDLNAVSESISRNFGTVFSRQMLWAETLDALLGRAVGVPMKPPKELRQTRNEDETTWA
Ga0222749_104090961	3300029636	Soil	SISRNFGAVFGSQILWLETLDALLGQAVGVPLQTPLELRQLHKDDDSSWA
Ga0311327_100820021	3300029883	Bog	NELGRSLDLNPVAESISRNVGRIFSSQILWVDTLDALLGRSVGVPLILPANLRLPGAGSAKVG
Ga0247271_1157403	3300029903	Soil	SMQRELGRPLDLNAVAESISRNFGTAFSSQMLWVETLDALLGRAVGVPLQRPAEFRLLHKDEGTTWA
Ga0302281_100746102	3300030044	Fen	QLGKELDLNAVAESISRNFGTVFSSQMLWVDTLDALLGRAVGVPVQRPDELQRLHKEDGTTWA
Ga0302177_106028261	3300030053	Palsa	GKRLELNAVAESISRNFGTVFFSQMLWVETLDALLGRAVGVPMQPPDELRQLYNEDDSTW
Ga0311353_109048872	3300030399	Palsa	VAESISRNFGTVFSSQMLWVDTLDALLGRAVGVPVQRPDELQRLHKEDGTTWA
Ga0311353_113857671	3300030399	Palsa	QQLNKEVDLNAVAESISRNCGTVFSSQMLWVDTLDALFGNTVGVPMQPPTELRHLHNEDETTWA
Ga0302192_104587101	3300030507	Bog	DLNAVAESISRNFGTVFSSQMLWVDTLDALLGRAVGVPVQRPDELQRLHKEDGTTWA
Ga0302183_100030591	3300030509	Palsa	TESISRNFGVVFSSQMLWVDTLDSLLGRTVGVPIQPPVELRQLHKEDDTTWA
Ga0302275_103094201	3300030518	Bog	AESISRNFGTVFSSQMLWVDTLDALLGRTVGVPMKPPAEFRQIANEDEVNWA
Ga0302314_113133811	3300030906	Palsa	TSMQQQLGKPPDPNMVAESISRNFGVVFSRQMLWVETLDALLGRAVGVPLQHPPELHPFRGEDDKTWA
Ga0265740_10198291	3300030940	Soil	SMQQQLGKELNLNAVAESISRNFGIVFQSQILWVDTLDALLGRTVGVPLRTPDELRKLSPRDDTAWA
Ga0170834_1071642411	3300031057	Forest Soil	LGNPLDLNTVAESVSRNFGVVFESQMLWVDTMDALLDRAVGVPVRAPAQPGKLHQKDEATWA
Ga0265760_101178672	3300031090	Soil	AVAESISRDFGTVFSSQMLWVETLDALLGRTVGVPMQHPTELRQIQQEDDTTWA
Ga0170824_1245420832	3300031231	Forest Soil	MQQELGKPLDMTAVAESISRNFGVVFESQILWVDTLDALLGHTVGVPMKPPMELRQIQQEDDTTWA
Ga0302326_110213061	3300031525	Palsa	DLNAVAESISRNFGTVFSSQMLWVETLDALLGRAVGVPMKLPSELRQLRKENDSVWG
Ga0302326_112947581	3300031525	Palsa	LNKDLDMTTVAESISRNFSKVFSTQILWLETIDALLGHTVGVPMKPPTELRQLHEKDDITWA
Ga0307474_100408111	3300031718	Hardwood Forest Soil	MEQQLGRKLDLNAVAESISRNFGTVFSSQMLWVDTLDALLGRTVGVPMKPPVELRELRKEKEEETNWA
Ga0307474_102597152	3300031718	Hardwood Forest Soil	SMQKELGKQLDLNAVSESISRNFGLVFQSQVLWVDTLDALLGRTVGVPMKPPANLRQFRKEDDTTWA
Ga0307469_120996271	3300031720	Hardwood Forest Soil	GRELDLNAVAESVSRNVGVVFQSQILWVDTLDALLGRTVGVPMKPPTEFRHMHKEDDTTW
Ga0307468_1012463612	3300031740	Hardwood Forest Soil	ELGKALDLNAVAESISRNFGTVFSSQMLWVDTLDALLGRSVGVPLQLPAQLRQLHKDDDSALA
Ga0302319_118605002	3300031788	Bog	GLNAVVESISRNFGTVFSSQMLWVDTLDALLGRKVGIPMKPPSELRRIHREEDTTWV
Ga0307478_100361855	3300031823	Hardwood Forest Soil	LGCELDLNAVSESVSRNFGVVFQSQVLWVDTLDALLGRTVGVPMKPPANLRQFRKEDDTTWA
Ga0307478_101074221	3300031823	Hardwood Forest Soil	KQLDLNAVAESISRNFGVAFSSQMLWVDTLDALLGRAVGVPMKPPVELRRLRGEGDVHLV
Ga0310912_107217001	3300031941	Soil	SSMQKELGRELDLNTVAESISSNFSTVFQSQILWVDTLDALLGRFVGVPMKSPTELRAIHKEDDTTWA
Ga0307479_102300132	3300031962	Hardwood Forest Soil	VTSMQRERGKPLDLNAVAESISRNFGVVFQSQMLWVETLDALLGATVGVPMKSPAEFRKLHQEDDTTWA
Ga0307479_109370721	3300031962	Hardwood Forest Soil	NSVSASISRNFGTVFSSQMLWVETLDAVLGHTVGVPMQRPTALRRLHKEDDTTWA
Ga0318540_104567282	3300032094	Soil	SMQKEFGREIDLNVVAESISRNFGLVFQSQILWVDTLDALLSRVVGVPMKAPAELRELQGDHETPRV
Ga0307471_1025085221	3300032180	Hardwood Forest Soil	QQELLKPLDLNTVAESISRNFGTVFSSQILWVDTLDALLGRAVGVPVKLPIELRKLHKEDDQTWA
Ga0348332_134288491	3300032515	Plant Litter	LNAVAESISRNFGVVFSRQMLWLDTLDALLGRTVGVPLQRPAELRQLHKEDGTTWV
Ga0335082_104117202	3300032782	Soil	GHALDLNVVAESISRNFGVVFQSQILWVETLDALLGRSIGVPMQAPAEPRRFRGEDEIVN
Ga0335080_111268791	3300032828	Soil	RELDLTVVGESISRNFGVVFQSQILWIDTLDALLGYTVGIPTQAPENLRRIRKEDDTTWA
Ga0335072_102152791	3300032898	Soil	TSMQKELDRALELNSVAESISRNFGVVFQSQMLWVDTLDALLGRSVGVPMKVPEELRKIHGEDGITWA
Ga0335072_114436861	3300032898	Soil	TSMQKELDRALELNSVAESISRNFGVVFQSQMLWVDTLDALLGRTVGVPMKAPEEFRKIHGEDGITWA
Ga0370515_0367879_3_185	3300034163	Untreated Peat Soil	AKPLDLNAVAESISRNFGVVFQSQILWVDTLDALLGRDVGVPMKLPAELRQLHRSEEFWS
Ga0370515_0463983_346_534	3300034163	Untreated Peat Soil	LGKELDWNTVAESISRNFGTVFSGQMLWVDTLDALLGRSVGVPVQRPDELQRLHKEDGTTWA