Metagenome / Metatranscriptome Family F094129

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F094129
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	79 residues
Representative Sequence	MAPANRARPYTYNVSSNGAAGDWYWEVTNRGEIIARGLAATEALARADALRAALSHVDPRPENLPPYLEDPLPPLPRFGAA
Number of Associated Samples	76
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	62.26 %
% of genes near scaffold ends (potentially truncated)	34.91 %
% of genes from short scaffolds (< 2000 bps)	89.62 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (65.094 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.585 % of family members)
Environment Ontology (ENVO)	Unclassified (46.226 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.113 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.18% β-sheet: 20.18% Coil/Unstructured: 59.63%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13545	HTH_Crp_2	24.53
PF00027	cNMP_binding	6.60
PF13340	DUF4096	3.77
PF00072	Response_reg	0.94
PF00106	adh_short	0.94
PF04392	ABC_sub_bind	0.94
PF13924	Lipocalin_5	0.94
PF01042	Ribonuc_L-PSP	0.94
PF13411	MerR_1	0.94
PF02518	HATPase_c	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.94
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.09 %
Unclassified	root	N/A	34.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.09 %
Unclassified	root	N/A	34.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.09 %
Unclassified	root	N/A	34.91 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	59.43 %
Unclassified	root	N/A	34.91 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	57.55 %
Unclassified	root	N/A	34.91 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	27.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.15 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.36 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.66 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.36 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.77 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.36 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.83 %
Bradyrhizobium arachidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	0.94 %
Thalassoglobus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Thalassoglobus	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.36 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	1.89 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.94 %
Thalassoglobus polymorphus	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Thalassoglobus → Thalassoglobus polymorphus	0.94 %
Bradyrhizobium arachidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	0.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_102797298	Not Available	539	Open in IMG/M
3300005332\|Ga0066388_102062823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1024	Open in IMG/M
3300005332\|Ga0066388_102390039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	958	Open in IMG/M
3300005332\|Ga0066388_108339662	Not Available	517	Open in IMG/M
3300005366\|Ga0070659_100523937	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300005455\|Ga0070663_100523792	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300005456\|Ga0070678_101858920	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300005713\|Ga0066905_101854792	Not Available	557	Open in IMG/M
3300005764\|Ga0066903_102941263	Not Available	923	Open in IMG/M
3300005764\|Ga0066903_104658109	Not Available	730	Open in IMG/M
3300005764\|Ga0066903_106122108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	629	Open in IMG/M
3300005937\|Ga0081455_10029655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4984	Open in IMG/M
3300005937\|Ga0081455_10072748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2845	Open in IMG/M
3300005981\|Ga0081538_10103823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1421	Open in IMG/M
3300006038\|Ga0075365_10027497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3620	Open in IMG/M
3300006038\|Ga0075365_10130050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1742	Open in IMG/M
3300006051\|Ga0075364_10452653	Not Available	877	Open in IMG/M
3300006051\|Ga0075364_10663975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	712	Open in IMG/M
3300006177\|Ga0075362_10161361	Not Available	1079	Open in IMG/M
3300006575\|Ga0074053_11924659	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300006844\|Ga0075428_100398802	Not Available	1474	Open in IMG/M
3300006844\|Ga0075428_100794951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1006	Open in IMG/M
3300006845\|Ga0075421_100663524	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300006845\|Ga0075421_100890269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1017	Open in IMG/M
3300006853\|Ga0075420_100472129	Not Available	1084	Open in IMG/M
3300009100\|Ga0075418_10558146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1231	Open in IMG/M
3300009100\|Ga0075418_10613067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1171	Open in IMG/M
3300009100\|Ga0075418_12151076	Not Available	608	Open in IMG/M
3300009147\|Ga0114129_12311462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	645	Open in IMG/M
3300009147\|Ga0114129_12647098	Not Available	598	Open in IMG/M
3300009156\|Ga0111538_13985153	Not Available	510	Open in IMG/M
3300009792\|Ga0126374_10192336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1282	Open in IMG/M
3300010046\|Ga0126384_10047403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2945	Open in IMG/M
3300010047\|Ga0126382_11840186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	571	Open in IMG/M
3300010361\|Ga0126378_11991904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	662	Open in IMG/M
3300010366\|Ga0126379_11130941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	889	Open in IMG/M
3300010366\|Ga0126379_13637993	Not Available	516	Open in IMG/M
3300010375\|Ga0105239_13181012	Not Available	535	Open in IMG/M
3300010376\|Ga0126381_101701832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	911	Open in IMG/M
3300010376\|Ga0126381_104751050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	523	Open in IMG/M
3300010398\|Ga0126383_10031103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4238	Open in IMG/M
3300010398\|Ga0126383_10690522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1098	Open in IMG/M
3300012958\|Ga0164299_10994559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617	Open in IMG/M
3300012960\|Ga0164301_11503029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	555	Open in IMG/M
3300012961\|Ga0164302_10647731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	774	Open in IMG/M
3300012971\|Ga0126369_10400382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1410	Open in IMG/M
3300012985\|Ga0164308_10492346	Not Available	1024	Open in IMG/M
3300013297\|Ga0157378_11522556	Not Available	714	Open in IMG/M
3300015372\|Ga0132256_100004370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12050	Open in IMG/M
3300015373\|Ga0132257_102126632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	725	Open in IMG/M
3300016270\|Ga0182036_10665721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	840	Open in IMG/M
3300016270\|Ga0182036_11301828	Not Available	606	Open in IMG/M
3300016294\|Ga0182041_11168382	Not Available	701	Open in IMG/M
3300016319\|Ga0182033_10880049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	792	Open in IMG/M
3300016341\|Ga0182035_11589347	Not Available	589	Open in IMG/M
3300016357\|Ga0182032_11844481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium arachidis	529	Open in IMG/M
3300016445\|Ga0182038_10210438	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Thalassoglobus → Thalassoglobus polymorphus	1537	Open in IMG/M
3300016445\|Ga0182038_11665306	Not Available	574	Open in IMG/M
3300021560\|Ga0126371_11526663	Not Available	796	Open in IMG/M
3300021560\|Ga0126371_12622206	Not Available	611	Open in IMG/M
3300027874\|Ga0209465_10521972	Not Available	592	Open in IMG/M
3300027909\|Ga0209382_10568382	Not Available	1239	Open in IMG/M
3300027909\|Ga0209382_11034023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	854	Open in IMG/M
3300027909\|Ga0209382_11383561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	708	Open in IMG/M
3300031564\|Ga0318573_10797917	Not Available	507	Open in IMG/M
3300031668\|Ga0318542_10397573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	711	Open in IMG/M
3300031679\|Ga0318561_10312607	Not Available	860	Open in IMG/M
3300031682\|Ga0318560_10477857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	675	Open in IMG/M
3300031713\|Ga0318496_10122477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1408	Open in IMG/M
3300031719\|Ga0306917_10317427	All Organisms → cellular organisms → Bacteria → Proteobacteria	1206	Open in IMG/M
3300031719\|Ga0306917_11379061	Not Available	544	Open in IMG/M
3300031744\|Ga0306918_10416379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1048	Open in IMG/M
3300031744\|Ga0306918_10796329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	738	Open in IMG/M
3300031747\|Ga0318502_10246824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1041	Open in IMG/M
3300031748\|Ga0318492_10120538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1304	Open in IMG/M
3300031770\|Ga0318521_10970038	Not Available	521	Open in IMG/M
3300031792\|Ga0318529_10215380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	892	Open in IMG/M
3300031833\|Ga0310917_10622913	Not Available	732	Open in IMG/M
3300031846\|Ga0318512_10058969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1731	Open in IMG/M
3300031879\|Ga0306919_10077972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2276	Open in IMG/M
3300031879\|Ga0306919_10710001	Not Available	774	Open in IMG/M
3300031879\|Ga0306919_10799683	Not Available	725	Open in IMG/M
3300031890\|Ga0306925_10226001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2019	Open in IMG/M
3300031894\|Ga0318522_10122238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	974	Open in IMG/M
3300031908\|Ga0310900_11791645	Not Available	522	Open in IMG/M
3300031910\|Ga0306923_11161345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	828	Open in IMG/M
3300031912\|Ga0306921_10267234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2003	Open in IMG/M
3300031912\|Ga0306921_12406294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	549	Open in IMG/M
3300031941\|Ga0310912_10072651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2480	Open in IMG/M
3300031941\|Ga0310912_10424499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1036	Open in IMG/M
3300031942\|Ga0310916_11156652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	641	Open in IMG/M
3300031981\|Ga0318531_10398706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	622	Open in IMG/M
3300031981\|Ga0318531_10430193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	597	Open in IMG/M
3300032001\|Ga0306922_11408959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	700	Open in IMG/M
3300032001\|Ga0306922_12269181	Not Available	521	Open in IMG/M
3300032035\|Ga0310911_10827125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	535	Open in IMG/M
3300032041\|Ga0318549_10159059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1007	Open in IMG/M
3300032055\|Ga0318575_10315951	Not Available	791	Open in IMG/M
3300032060\|Ga0318505_10229470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	872	Open in IMG/M
3300032063\|Ga0318504_10259561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	819	Open in IMG/M
3300032076\|Ga0306924_11559767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300032091\|Ga0318577_10511924	Not Available	572	Open in IMG/M
3300032094\|Ga0318540_10016677	All Organisms → cellular organisms → Bacteria → Proteobacteria	2993	Open in IMG/M
3300032094\|Ga0318540_10228002	Not Available	899	Open in IMG/M
3300032261\|Ga0306920_100424860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1975	Open in IMG/M
3300032261\|Ga0306920_101541221	Not Available	947	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.64%
Host-Associated	Host-Associated	27.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.64%
Plants	Host-Associated → Plants	27.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.92%
Roots	Host-Associated → Plants → Roots	5.66%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.09%
Loam	Environmental → Terrestrial → Soil → Loam	7.55%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	4.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.23%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.55%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	4.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.64%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.21%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.55%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.77%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1027972982	3300000955	Soil	MSRETQAKKAAYTYNISSNGAAGDWYWEVTNRGAIIERGLAATEALARADAIGAARSHVDRRPENLPPYLEDPLAHSPRFRAA*
Ga0066388_1020628232	3300005332	Tropical Forest Soil	MAPANRARPYTYNVSSNGAAGDWYWEVTNRGQIIARGLAATEVLARADALRAALSHVDPRPENLPPYLEDPLPA*
Ga0066388_1023900392	3300005332	Tropical Forest Soil	MSITGNGSAQAPVAERPIALPPDQGRGSVMAPANPASSYTCNVSSNGAAGDRYWEVTNRGEIIARGLAATEALARADAMRAALSHVDLRPENLPLYLEDPSSPLPRFEAA*
Ga0066388_1083396621	3300005332	Tropical Forest Soil	MSLVETQAQETTFTYNTSPNGVCGDWYWEVMCSGNIVARGLAATEALARAHAMRAALSHVDPRPEILPPYLQDPLPPLLRFGAT*
Ga0070659_1005239372	3300005366	Corn Rhizosphere	MVQNRSYIYNISSNGAAGDWYWDVSRRGEIIARGLAATEVLARAEAMSAAVADIDPGPDNLAPYLDDSLPPQPSFGAT*
Ga0070663_1005237922	3300005455	Corn Rhizosphere	MVQNRSYIYNISSNGAAGDWYWDVTRGGEIIARGLAATEVLARAEAMSAAVADIDPGPDNLAPYLDDSLPPQPSFGAT*
Ga0070678_1018589201	3300005456	Miscanthus Rhizosphere	YNISSNGAAGDWYWDVSRRGEIIARGLAATEVLARAEAMSAAVADIDPGPDNLAPYLDDSLPPQPSFGAT*
Ga0066905_1018547922	3300005713	Tropical Forest Soil	MAQASPYTYNVSSNGAAGDWYWEVTSRGEIIARGLAASQILARAEALTVALSHVDPQTENLPAYLADPLPALPRFGAD*
Ga0066903_1029412632	3300005764	Tropical Forest Soil	MAPANPASSYTYNVSLNGATGDWYWEATNRGEIIARGLAATETLARADAMRAALSHVDPRPENLPPYLEDPLPPLPRFGAA*
Ga0066903_1046581092	3300005764	Tropical Forest Soil	MAPANPASSYTYNVSSNGVAGDWYWEITNRGEIIARGLAITEALARAEAMRAALSHVDPRPENLPSYLEDPLAS*
Ga0066903_1061221081	3300005764	Tropical Forest Soil	MAPANHARPYTYNVSSNGAAGDWYWEVTNRGQIIARGLAATATLARADAMRAALSHVDPRPENLSPYLEDPLPIGAA*
Ga0081455_100296554	3300005937	Tabebuia Heterophylla Rhizosphere	MVQASPYTYNVSSNGVAGDWYWEVTRHGEIIARGLAATEALARADAIRVALSHVDPRPENLPPYLEDPLPPLPRFGAA*
Ga0081455_100727482	3300005937	Tabebuia Heterophylla Rhizosphere	MAQASPYTYNVSSNGAAGDWYWEVTNHGEIIARGLAATEALARAAALRAAHVDPRPENLPLYLEDPLASWPRIWAA*
Ga0081538_101038233	3300005981	Tabebuia Heterophylla Rhizosphere	MSPVETLAQDTVFTYNISPNGACGDWYWEVTCHGDIMARGLAATEVLARADAMRAALSHIDSRPENLPPYVEDPSPPLPRLGAA*
Ga0075365_100274971	3300006038	Populus Endosphere	MAPASPYSYNISSNGAAGDWYWEVTSRGEIIARGIAATEALARADALRAALSHVDPRPENLPAYLEDPWASSP
Ga0075365_101300502	3300006038	Populus Endosphere	MLLLETQAEKAAYAYNISSNGAAGDWYWEVTSRGEIITRGLAATQTLARADAMRAALSHIGRRPENLPPYLEDPWASSPRIRAA*
Ga0075364_104526531	3300006051	Populus Endosphere	MAPASPYSYNISSNGAAGDWYWEVTSRGEIIARGIAATEALARADALRAALSHVDPRPENLPAYLEDPWASSPRIRAA*
Ga0075364_106639752	3300006051	Populus Endosphere	MLPVETQAEKAAYTYHISSNGAAGDWHWEVTNRGEIITRGLAATEALARADAIRAALSQVDRRPANLPPYLEDPWASSPRIRAA*
Ga0075362_101613613	3300006177	Populus Endosphere	MAPASPYSYNISSNGAAGDWYWEVTSRGEIIARGIAATEALARADALRAALSHVDPRPENLPAYLEDPSPSLTRFGAA*
Ga0074053_119246592	3300006575	Soil	MVPKTSYNYNISSNGAAGDWYWDVSRRGEIIARGLAATEVLARAEAMSAAVADIDPAPDNLAPDLDDSLLPQPSFGAT*
Ga0075428_1003988022	3300006844	Populus Rhizosphere	MLPVETQAEKAAYTYHISSNGAAGDWYWEVTNRGEIITRGLAATEALARADAIRAALSQVDRRPANLPPYLEDPWASSPRIRAA*
Ga0075428_1007949512	3300006844	Populus Rhizosphere	MSITGSGTALGAGGRDRSRSRLDLKGSVVASATTYTYNVCSNGAAGDWYWEVTCRGEIIARGLAATEVLARADALTAALSHVDPRPENLPAYLEDPSPSLTRFGAA*
Ga0075421_1006635242	3300006845	Populus Rhizosphere	MSRETQAKKAAYTYNISSNGAAGDWYWEVTNRGAIIERGLAATEALARADAIGAARSHVDRRPENLPPYLEDPLAHWPRFRAA*
Ga0075421_1008902691	3300006845	Populus Rhizosphere	MPVHEGAFTYNISPNGACGDWYWEVTNHGEIIARGLAATEALARADAIGAAVSHVDRRPDNVPPYLNDPSPPLPRFGAA*
Ga0075420_1004721292	3300006853	Populus Rhizosphere	MLPVETQAEKAAYTYNISSNGAAGDWYWEVTSRGEIIARGLAATKALARADAKRAAASHIDPRPEKLPPYLEDPWAFSPRIRAA*
Ga0075418_105581462	3300009100	Populus Rhizosphere	VASATTYTYNVCSNGAAGDWYWEVTCRGEIIARGLAATEVLARADALTAALSHVDPRPENLPAYLEDPSPSLTRFGAA*
Ga0075418_106130672	3300009100	Populus Rhizosphere	MSVHEGAFTYNISPNGACGDWYWEVTWGGEIIARGLAATEARARVEAIGAAVSHVDRRPENLPPYLEAPSPPLPRFEPA*
Ga0075418_121510762	3300009100	Populus Rhizosphere	MLLLETQAEKAAYAYNISSNGAAGDWYWEVTSRGEIITRGLAATQTLARADAMRAALSHIGRRPENLPP
Ga0114129_123114622	3300009147	Populus Rhizosphere	LPVETQAEKAAYTYHISSNGAAGDWYWGVTSRGEIIARGIAATEALARADALRAALSHVDPRPENLPAYLEDPWASSPRIRAA*
Ga0114129_126470982	3300009147	Populus Rhizosphere	MLPVETQAEKAAYTYHISSNGAAGDWYWEVTNRGEIITRGLAATEALARADAISTAVSHVDRRPENLYLEDLLAPSPCFGAA*
Ga0111538_139851531	3300009156	Populus Rhizosphere	ETQAEKAAYAYNISSNGAAGDWYWEVTSRGEIITRGLAATQTLARADAMRAALSHIGRRPENLPPYLEDPWASSPRIRAA*
Ga0126374_101923363	3300009792	Tropical Forest Soil	MAPANPASSYTYNVSSNGAAGDWYWEVTNRGEIIARGLAATEALARADAMRAALSHVDLRPENLPLYLEDPSSPLPRFEAA*
Ga0126384_100474033	3300010046	Tropical Forest Soil	MAPANPASSYTYNVSSNGAAGDWYWEITNRGEIIARGLAITEALARAEAMRAALSHVDPRPENLPSYLEDPLPPLPRLGAA*
Ga0126382_118401861	3300010047	Tropical Forest Soil	DVAVPCSNGAAGDWYWEITNRGEIIARGLAITEALARAEAMRAALSHVDPRPENLPSYLEDPLPPLPRFGAA*
Ga0126378_119919041	3300010361	Tropical Forest Soil	MAPANHARPYTYNVSSNSAAGDWYWEVANRGQIIVRGLAATEVLARADALRAALSHVDPRPENLSPYLEDPLPIGAA*
Ga0126379_111309412	3300010366	Tropical Forest Soil	MAPANPASSYTYNVSSNGAAGDWYWEVTNRGEIIARGLAATEALARADAMRAALSHIDLRPENLPLYLEDPSSPLPRFEAA*
Ga0126379_136379931	3300010366	Tropical Forest Soil	MAPANPASSYTYNVSSNGVTGGWYWEATNRGEIIARGLAATEALARADALRAALSHVDPRPQNLPPYLEEPLPP
Ga0105239_131810122	3300010375	Corn Rhizosphere	MVQNRSYIYNISSNGAAGDWYWDVTRRGEIIARGLAATEVLARAEAMSAAVADIDPALDNLAPDLDDSLLPQPSFGAT*
Ga0126381_1017018321	3300010376	Tropical Forest Soil	MAPANRARPYTYNVSSNGAAGDWHWEVTNRGQIIARGLAATEVLARADALRAALSHVDPRPENLPPYLEDPLPA*
Ga0126381_1047510501	3300010376	Tropical Forest Soil	ASSYTCNVSSNGAAGDRYWEVTNRGEIIARGLAATEALARADAMRAALSHVDLRPENLPLYLEDPSSPLPRFEAA*
Ga0126383_100311035	3300010398	Tropical Forest Soil	MAPANPASSYTYNVSSNGAAGDWYWEITNRGEIIARGLAITEALARAEAMRAALSHVDPRPENLPSYLEDPLPPLPRFGAA*
Ga0126383_106905222	3300010398	Tropical Forest Soil	VAPEILARPYTYNVLSNGAAGDWCWEVTNRGEIIARGLAATEALARADAMRAALSHVDLRPENLPLYLEDPSSPLPRFEAA*
Ga0164299_109945592	3300012958	Soil	VPKTSYNYNISSNGAAGDWYWDVSRRGEIIARGLAATEVLARAEAMSAAVADIDPGPDNLAPYLDDSLPPQPSFGAT*
Ga0164301_115030292	3300012960	Soil	SNGAAGDWYWDVSRRGEIIARGLAATEVLARAEAMSAAVADIDPGPDNLAPYLDDSLPPQPSFGAT*
Ga0164302_106477312	3300012961	Soil	YGVATLDGKFHAGAGDWYWDVSRRGEIIARGLAATEVLARAEAMSAAVADIDPAPDNLAPDLDDSLLPQPSFGAT*
Ga0126369_104003821	3300012971	Tropical Forest Soil	MAPANPASSYTYNVSSNGVTGGWYWEATNRGEIIARGLAATETLARADAMRAALSHVDPRPENLPPYLEGPSPPLPRFGAA*
Ga0164308_104923461	3300012985	Soil	MVPKTSYNYNISSNGAAGDWYWDVTRRGEIIARGLAATEVLARAEAMSAAVADIDPGPDNLAPYLDDSLPPQPSFGAT*
Ga0157378_115225562	3300013297	Miscanthus Rhizosphere	MVQNRSYIYNISSNGAAGDWYWDVTWSGEVIARGLAATEALARAEAMTAAVSDVVPAPEETEDDAAPYLDDLVLPAPSIGAA*
Ga0132256_10000437010	3300015372	Arabidopsis Rhizosphere	VASASTYAYNICSNGAAGDWYWEVTCRGEIIARGLAGTEVLARADALTAALPHVDPRPENLPAYLEDPSPSLARVGKA*
Ga0132257_1021266321	3300015373	Arabidopsis Rhizosphere	MVPKTSYNYNISSNGAAGDWYWDVSRRGEIIARGLAATEVLARAEAMSAAVADIDPAPDNLAPYLDDSLPPQPSFGAT*
Ga0182036_106657212	3300016270	Soil	PANPASSYTYNVSSNGAAGDWYWEATNRGEIIARGLAATATLARADAMRAALSHLDPRPENLPPYLEDPLPPLPRFGAA
Ga0182036_113018281	3300016270	Soil	MALANPARSYTYNVSSNSAAGDWYWEVANRGQIIARGLAATEVLARADALRAALSHVDPRPENLPPYLEDPLPPLPRFGAA
Ga0182041_111683822	3300016294	Soil	MAPANPASPYTYNVSSNGATGDWYWEATNRREIIARGLAATETLARADAMGAALSHVDPRPENLPPYLED
Ga0182033_108800492	3300016319	Soil	ENVMAPANPASSYTYNVSSNGAAGDWYWEATNRGEIIARGLAATATLARADAMRAALSHLDPRPENLPPYLEDPLPPLPRFGAA
Ga0182035_115893471	3300016341	Soil	MVRASSYTYNVSWNGAAGDWYWEVTSHGEIIARGLAATEALARADAIRVALSHVDPRPENLPAYLEDPSPPLPRFEAA
Ga0182032_118444812	3300016357	Soil	VAPKTSYTYNISSNGAAGDWYWEVISRGGKIIARGLSATEALARARAMRAALSHVDLRPENLPPYLQD
Ga0182038_102104382	3300016445	Soil	MVRASSYTYNVSWNGAAGDWYWEVTSHGEIIARGLAATEALARADALRGALSHVDPRPQNLPPYLEDLLPPLPRFGAA
Ga0182038_116653061	3300016445	Soil	VGPANPASAYSYNISSNGAAGDWYWEVISRGGKIIARGLSATEALARARAMRAALSHVDLRPENLPPYLQDPLPPLPRFGA
Ga0126371_115266631	3300021560	Tropical Forest Soil	MAPANPASSYTYNVSSNGVTGGWYWEATNRGEIIARGLAATETLARADAMRAALSHVDPRPENLPPY
Ga0126371_126222061	3300021560	Tropical Forest Soil	MSLVETQAQETTFTYNTSPNGVCGDWYWEVMCSGNIVARGLAATEALARAHAMRAALSHVDPRPEILPPYLQDPLPPLLRFGAT
Ga0209465_105219721	3300027874	Tropical Forest Soil	MAPANPASSYTYNVSSNGAAGDWYWEVTNRGEIIARGLAATEALARADAMRAALSHIDLRPENLPLYLEDPSSPLPRFEAA
Ga0209382_105683822	3300027909	Populus Rhizosphere	MLPVETQAEKAAYTYHISSNGAAGDWYWEVTIRGKIIARGLAATEALARADARRAVLSYVDPKQENLPPYFEDPWASSPRIRA
Ga0209382_110340232	3300027909	Populus Rhizosphere	RLDLKGSVVASATTYTYNVCSNGAAGDWYWEVTCRGEIIARGLAATEVLARADALTAALSHVDPRPENLPAYLEDPSPSLTRFGAA
Ga0209382_113835611	3300027909	Populus Rhizosphere	NGACGDWYWEVTNHGEIIARGLAATEALARADAIGAAVSHVDRRPDNVPPYLNDPSPPLPRFGAA
Ga0318573_107979172	3300031564	Soil	MVRASSYTYNVSWNGAAGDWYWEVTSHGEIIARGLAATEALARADAIRVALSHVDPRPENLPPYLEDPLPPLPRFGAV
Ga0318542_103975732	3300031668	Soil	VFTYNVSLNGDRGDWYWEITCGGYIVARGLAATQAQARADAVRASLSHVDPRPENLPPYLEDLLPPLPRFGAA
Ga0318561_103126071	3300031679	Soil	MSLVEMQAQTAFTYNISTNGGCGDWYWEVACGGAIIARGLSATETLARVDALRVALSHVDPRPENLPAYLEDPSPPLPRFEAA
Ga0318560_104778571	3300031682	Soil	SYTYNISSNGAAGDWYWDVTNHREIIARGLAATEALARADALRAALSHVDPQPENLPPYLQDPSPPLPHFGVA
Ga0318496_101224771	3300031713	Soil	VSLNGDRGDWYWEITCGGYIVARGLAATQAQARADAVRASLSHVDPRPENLPPYLEDLLPPLPRFGAA
Ga0306917_103174272	3300031719	Soil	VAPKTSYTYNISSNGAAGDWYWDVTNHREIIARGLAATEALARADALRAALSHVDPQPENLPPYLQDPSPPLPHFGVA
Ga0306917_113790611	3300031719	Soil	MALANPASSYTYNVSSNGTAGDWYWEVTSHGEIIARGLAATEALARVDALRAALSHVDPRPQNLPPYLEDLLPPLPRFGAA
Ga0306918_104163791	3300031744	Soil	MVRASSYTYNVSWNGAAGDWYWEVTSHGEIIARGLAATEALARVDALRAALSHVDPRPQNLPPYLEDLLPPLPRFGAA
Ga0306918_107963291	3300031744	Soil	MAPTTPSSSYTYNVSSNCAAGDWYWEVISHGEIIARGLAATEALARADALRAALSHVDPRPENLPPYLEDPLPQLLRSD
Ga0318502_102468241	3300031747	Soil	AQEPAFTYNVSLNGDCGDWYWEVTCGGYIVARGLAATEALARGDAMRAALSHVDPENLPYLEPLPPLPHFGAV
Ga0318492_101205383	3300031748	Soil	FTYNVSLNGDRGDWYWEITCGGYIVARGLAATQAQARADAVRASLSHVDPRPENLPPYLEDLLPPLPRFGAA
Ga0318521_109700382	3300031770	Soil	VSARGDMLVETQAEEPAFSCQISLNGDCGDWYWEVTCGGYIVARGLAATEALARGDAMRAALSHVDPENLPYLEPLPPLPHFGAV
Ga0318529_102153801	3300031792	Soil	VAERPIALPPDLRGSVMVRASSYTYNVSWNGAAGDWYWEVTSHGEIIARGLAATEALARADAIRVALSHVDPRPENLPPYLEDPLPPLPRFGAV
Ga0310917_106229132	3300031833	Soil	MAPANSASSYTYNVSSNGAAGDWYWEATNRGEIIARGLAATQAQARTDAMRAALSHVDPRPENLPPYL
Ga0318512_100589691	3300031846	Soil	AQEPAFTYNVSLNGDHGDWYWEVTCGGYIVARGLGATQAQARTDAMRAALSHVDPRPENLPPYLGDPLPPLPHFGAA
Ga0306919_100779722	3300031879	Soil	MAPANPASSYTYNVSSNGAAGDWYWEATNRGEIIARGLAATATLARADAMRAALSHLDPRPENLPPYLEDPLPPLPRFGAA
Ga0306919_107100011	3300031879	Soil	MAPANRARPYTYNVSSNGAAGDWYWEVTNRGEIIARGLAATEALARADALRAALSHVDPRPENLPPYLEDPLPPLPRFGAA
Ga0306919_107996831	3300031879	Soil	MVRASSYTYNVSWNGAAGDWYWEVISRGGKIIARGLSATEALARARAMRAALSHVDLRPENLPPYLQDPLPPLPRFGAT
Ga0306925_102260014	3300031890	Soil	MAPANPASSYTYNFSSNGAAGDWYWEITNRGEIIARGLAITEALARAEAMRAALSHVDPRPENLPSYLEDPLPPLPRFGAA
Ga0318522_101222382	3300031894	Soil	MALANPARSYTYNVSSNSAAGDWYWEVANRGQIIARGLAATEALARADAIRVALSHVDPRPENLPPYLEDPLPPLPRFGAA
Ga0310900_117916451	3300031908	Soil	MVPKTSYNYNISSNGAAGDWYWDVSRRGEIIARGLAATEVLARAEAMSAAVADIDPGPDNLAPYLDDSLPPQPSFGAT
Ga0306923_111613452	3300031910	Soil	MAPANRARPYTYNVSSNGAAGDWYWEVTNRGQIIARGLAATEVLARADALRAALSHVDPRPENLPPYLEDPLPA
Ga0306921_102672343	3300031912	Soil	VGPANPASAYSYNISSNGAAGDWYWEVISRGGKIIARGLSATEALARARAMRAALSHVDLRPENLPPYLQDPLP
Ga0306921_124062942	3300031912	Soil	TYNVSSNGTAGDWYWEVTSHGEIIARGLAATEALARVDALRAALSHVDPRPQNLPPYLEDLLPPLPRFGAA
Ga0310912_100726514	3300031941	Soil	NVSLNGAAGDWYWEVTSHGEIIARGLAATEALARADAIRVALSHVDPRPENLPPYLEDPLPPLPRFGAV
Ga0310912_104244992	3300031941	Soil	MALANPARSYTYNVSSNSAAGDWYWEVANRGQIIARGLAATEVLARADALRAALSHVDPRPENLPPYLEDPLPA
Ga0310916_111566521	3300031942	Soil	ETNRAPACSNGRGSVMAPAIPASSYTYYVSSNGAAGDWYWEVTDRGVIIARGLAATQALARADALRVALSHVDPRPKNLPPGVEDWFTVAPLQGRLG
Ga0318531_103987061	3300031981	Soil	IALPPDLRGSVMVRASSYTYNVSWNGAAGDWYWEVTSHGEIIARGLAATEALARADAIRVALSHVDPRPENLPPYLEDPLPPLPRFGAV
Ga0318531_104301931	3300031981	Soil	NSASSYTYNVSSNGAAGDWYWEATNRGEIIARGLAATATLARADAMRAALSHLDPRPENLPPYLEDPLPPLPRFGAA
Ga0306922_114089592	3300032001	Soil	MAPANPASSYTYNVSSNGAAGDWYWEITNRGEIITRGLAITEALARAEAMRAALSHVDPRPENLPSYLEDPLPPLPRFGAA
Ga0306922_122691811	3300032001	Soil	VGPANPASAYSYNISSNGAAGDWYWEVISRGGKIIARGLSATEALARARAMRAALSHVDLRPENLPPYLQDPLPPL
Ga0310911_108271251	3300032035	Soil	SSYTYNVSSNGAAGDWYWEATNRGEIIARGLAATEALARADALRAALSHVDPRPENLPPYLEDPLPPLPRFGAA
Ga0318549_101590591	3300032041	Soil	PAFTYNVSLNGDRGDWYWEITCGGYIVARGLAATQAQARADAVRASLSHVDPRPENLPPYLEDLLPPLPRFGAA
Ga0318575_103159511	3300032055	Soil	MAPANPASSYTYNVSSNGAAGDWYWEATNRGEIIARGLAATQAQARTDAMRAALSHVDPRPENLPPYLEDPLPPLPRFGAA
Ga0318505_102294702	3300032060	Soil	MAPANPASSYTYNVSSNGAAGDWYWEATNRGEIIARGLAATQAQARTDAMRAALSHVDPRPENLPPYLEDPLPPLPHFGAA
Ga0318504_102595611	3300032063	Soil	MAPANPASSYTYNVSSNGAAGDWYWEVTNRGEIIARGLAATEALARADALRAALSHVDPRPENLPPYLEDPLPA
Ga0306924_115597672	3300032076	Soil	MAPANPASSYTYTVSSNGPAGDWYWEVTNRGEIIARGLAATEALARADALRAALSHVDPRPENLPPYLEDPLPA
Ga0318577_105119241	3300032091	Soil	MAPANRARPYTYNVSSNGAAGDWYWEVTNRGQIIARGLAATATLARADAMRAALSHVDPRPENLSPYLEDPLPIGAA
Ga0318540_100166776	3300032094	Soil	MAPANSASSYTYNVSSNGAAGDWYWEATNRGEIIARGLAATATLARADAMRAALSHLDPRPENLPPYLEDPLPPLPRFGAA
Ga0318540_102280021	3300032094	Soil	MVRASSYTYNVSWNGAAGDWYWEVTSHGEIIARGLAATEALARADAIRVALSHVDPRPENLPPYLEDPLPPLPRFGQFR
Ga0306920_1004248601	3300032261	Soil	MAPAIPASSYTYYVSSNGAAGDWYWEVTDRGVIIARGLAATQALARADALRVALSHVDPRPKNLPPGVEDWFTVAPLQGRLG
Ga0306920_1015412211	3300032261	Soil	MAPANSASSYTYNVSSNGAAGDWYWEATNRGEIIARGLAATQAQARTDAMRAALSHVDPRPENLPPYLEDPLPPLPRFGAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094129

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences