Metagenome / Metatranscriptome Family F094071

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094071
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	50 residues
Representative Sequence	FECWMGGEKIYLHKPGNSNLDMPIDINNDGTLQTPIGEIKKKGN
Number of Associated Samples	93
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.58 %
% of genes near scaffold ends (potentially truncated)	80.19 %
% of genes from short scaffolds (< 2000 bps)	89.62 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.038 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere (8.491 % of family members)
Environment Ontology (ENVO)	Unclassified (54.717 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (62.264 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.17% β-sheet: 29.17% Coil/Unstructured: 66.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF06723	MreB_Mbl	12.26
PF07995	GSDH	10.38
PF08334	T2SSG	2.83
PF00561	Abhydrolase_1	2.83
PF03061	4HBT	1.89
PF07963	N_methyl	1.89
PF13544	Obsolete Pfam Family	1.89
PF02826	2-Hacid_dh_C	1.89
PF10129	OpgC_C	1.89
PF11075	DUF2780	0.94
PF00849	PseudoU_synth_2	0.94
PF13243	SQHop_cyclase_C	0.94
PF00248	Aldo_ket_red	0.94
PF12543	DUF3738	0.94
PF05988	DUF899	0.94
PF01381	HTH_3	0.94
PF02452	PemK_toxin	0.94
PF13229	Beta_helix	0.94
PF07638	Sigma70_ECF	0.94
PF02518	HATPase_c	0.94
PF11379	DUF3182	0.94
PF00920	ILVD_EDD	0.94
PF01257	2Fe-2S_thioredx	0.94
PF04093	MreD	0.94
PF00005	ABC_tran	0.94
PF13279	4HBT_2	0.94
PF05015	HigB-like_toxin	0.94
PF01627	Hpt	0.94
PF00440	TetR_N	0.94
PF13485	Peptidase_MA_2	0.94
PF00034	Cytochrom_C	0.94
PF05016	ParE_toxin	0.94
PF00581	Rhodanese	0.94
PF04471	Mrr_cat	0.94
PF04255	DUF433	0.94
PF07617	DUF1579	0.94
PF04365	BrnT_toxin	0.94
PF10459	Peptidase_S46	0.94
PF00072	Response_reg	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1077	Cell shape-determining ATPase MreB, actin-like superfamily	Cell cycle control, cell division, chromosome partitioning [D]	12.26
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	10.38
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	1.89
COG0564	Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific	Translation, ribosomal structure and biogenesis [J]	0.94
COG1187	Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605	Translation, ribosomal structure and biogenesis [J]	0.94
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.94
COG1905	NADH:ubiquinone oxidoreductase 24 kD subunit (chain E)	Energy production and conversion [C]	0.94
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.94
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.94
COG2891	Cell shape-determining protein MreD	Cell wall/membrane/envelope biogenesis [M]	0.94
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	0.94
COG3549	Plasmid maintenance system killer protein	Defense mechanisms [V]	0.94
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.04 %
Unclassified	root	N/A	33.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.04 %
Unclassified	root	N/A	33.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.04 %
Unclassified	root	N/A	33.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	32.08 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.49 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.94 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.96 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.26 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	10.38 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.83 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.94 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.26 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	6.60 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.83 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.89 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.94 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.26 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	2.83 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.94 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.94 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.94 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.26 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	2.83 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.94 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.94 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.94 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.26 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	2.83 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.94 %
Granulicella rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	0.94 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.94 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.26 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	2.83 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.94 %
Granulicella rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	0.94 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.94 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10244966	Not Available	542	Open in IMG/M
3300000559\|F14TC_102822055	All Organisms → cellular organisms → Bacteria	1435	Open in IMG/M
3300000955\|JGI1027J12803_109291289	Not Available	550	Open in IMG/M
3300004643\|Ga0062591_102904797	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	508	Open in IMG/M
3300005328\|Ga0070676_11003002	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300005332\|Ga0066388_101960811	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300005337\|Ga0070682_100467862	All Organisms → cellular organisms → Bacteria → Acidobacteria	969	Open in IMG/M
3300005340\|Ga0070689_102228805	Not Available	502	Open in IMG/M
3300005456\|Ga0070678_102223171	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	520	Open in IMG/M
3300005459\|Ga0068867_102316664	Not Available	510	Open in IMG/M
3300005539\|Ga0068853_101405614	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300005539\|Ga0068853_102090832	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300005563\|Ga0068855_100667007	All Organisms → cellular organisms → Bacteria	1115	Open in IMG/M
3300005563\|Ga0068855_101722740	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300005577\|Ga0068857_100718786	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	950	Open in IMG/M
3300005578\|Ga0068854_101462854	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300005616\|Ga0068852_102088998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300005617\|Ga0068859_100237347	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1912	Open in IMG/M
3300005718\|Ga0068866_10360337	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	927	Open in IMG/M
3300005829\|Ga0074479_10740111	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300005843\|Ga0068860_100129054	All Organisms → cellular organisms → Bacteria	2424	Open in IMG/M
3300005843\|Ga0068860_101394113	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300006196\|Ga0075422_10352557	All Organisms → cellular organisms → Bacteria → Proteobacteria	641	Open in IMG/M
3300006638\|Ga0075522_10194157	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1028	Open in IMG/M
3300006806\|Ga0079220_10071097	Not Available	1715	Open in IMG/M
3300006845\|Ga0075421_100398683	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1653	Open in IMG/M
3300006854\|Ga0075425_101533826	Not Available	752	Open in IMG/M
3300006904\|Ga0075424_101566299	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300009078\|Ga0105106_10223435	Not Available	1372	Open in IMG/M
3300009093\|Ga0105240_10212042	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2262	Open in IMG/M
3300009093\|Ga0105240_10591000	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300009093\|Ga0105240_10867971	Not Available	973	Open in IMG/M
3300009093\|Ga0105240_11067631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	861	Open in IMG/M
3300009098\|Ga0105245_12645807	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300009156\|Ga0111538_10994262	All Organisms → cellular organisms → Bacteria	1061	Open in IMG/M
3300009176\|Ga0105242_12429974	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300009177\|Ga0105248_10064177	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4123	Open in IMG/M
3300009545\|Ga0105237_11903472	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300009553\|Ga0105249_13025847	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300010399\|Ga0134127_11291575	All Organisms → cellular organisms → Bacteria → Acidobacteria	799	Open in IMG/M
3300011119\|Ga0105246_10878167	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	802	Open in IMG/M
3300012200\|Ga0137382_11337526	Not Available	504	Open in IMG/M
3300012680\|Ga0136612_10452874	Not Available	651	Open in IMG/M
3300012924\|Ga0137413_11119675	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	624	Open in IMG/M
3300012931\|Ga0153915_12054979	Not Available	669	Open in IMG/M
3300013100\|Ga0157373_11204087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300013104\|Ga0157370_10427395	Not Available	1218	Open in IMG/M
3300013296\|Ga0157374_11451308	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300013297\|Ga0157378_12155929	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300013297\|Ga0157378_12260008	Not Available	595	Open in IMG/M
3300013307\|Ga0157372_12832369	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300013308\|Ga0157375_11510506	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300013308\|Ga0157375_13713147	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	507	Open in IMG/M
3300014325\|Ga0163163_10410838	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella rosea	1412	Open in IMG/M
3300014969\|Ga0157376_10475917	Not Available	1223	Open in IMG/M
3300014969\|Ga0157376_11829442	Not Available	644	Open in IMG/M
3300015371\|Ga0132258_10001932	All Organisms → cellular organisms → Bacteria	37525	Open in IMG/M
3300015372\|Ga0132256_101423430	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300017966\|Ga0187776_10214815	All Organisms → cellular organisms → Bacteria → Proteobacteria	1215	Open in IMG/M
3300021432\|Ga0210384_10719473	All Organisms → cellular organisms → Bacteria → Acidobacteria	893	Open in IMG/M
3300025862\|Ga0209483_1130919	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1063	Open in IMG/M
3300025909\|Ga0207705_10349574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1139	Open in IMG/M
3300025913\|Ga0207695_10317293	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300025913\|Ga0207695_11087327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	679	Open in IMG/M
3300025918\|Ga0207662_10573624	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300025921\|Ga0207652_10983768	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300025921\|Ga0207652_11780124	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300025927\|Ga0207687_11441418	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300025928\|Ga0207700_11692761	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	558	Open in IMG/M
3300025933\|Ga0207706_11642590	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300025934\|Ga0207686_10764766	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	772	Open in IMG/M
3300025941\|Ga0207711_10046006	All Organisms → cellular organisms → Bacteria → Acidobacteria	3729	Open in IMG/M
3300025960\|Ga0207651_10856248	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	808	Open in IMG/M
3300026035\|Ga0207703_11056410	Not Available	780	Open in IMG/M
3300026067\|Ga0207678_11444357	Not Available	608	Open in IMG/M
3300026078\|Ga0207702_11223669	Not Available	745	Open in IMG/M
3300026142\|Ga0207698_10096411	All Organisms → cellular organisms → Bacteria	2437	Open in IMG/M
3300026557\|Ga0179587_10733183	Not Available	651	Open in IMG/M
3300027031\|Ga0208986_1019654	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300027660\|Ga0209736_1128567	Not Available	679	Open in IMG/M
3300027765\|Ga0209073_10128722	All Organisms → cellular organisms → Bacteria → Acidobacteria	918	Open in IMG/M
3300027775\|Ga0209177_10215014	Not Available	692	Open in IMG/M
3300027979\|Ga0209705_10127583	Not Available	1372	Open in IMG/M
3300028379\|Ga0268266_10030187	All Organisms → cellular organisms → Bacteria → Acidobacteria	4606	Open in IMG/M
3300028381\|Ga0268264_10154235	All Organisms → cellular organisms → Bacteria	2062	Open in IMG/M
3300028381\|Ga0268264_12018054	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300028665\|Ga0302160_10061822	Not Available	776	Open in IMG/M
3300030854\|Ga0075385_11866568	Not Available	517	Open in IMG/M
3300031231\|Ga0170824_107793299	Not Available	1278	Open in IMG/M
3300031232\|Ga0302323_103121608	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	528	Open in IMG/M
3300031446\|Ga0170820_15359805	Not Available	1229	Open in IMG/M
3300031474\|Ga0170818_107228613	Not Available	875	Open in IMG/M
3300031679\|Ga0318561_10159484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	1213	Open in IMG/M
3300031765\|Ga0318554_10529528	Not Available	666	Open in IMG/M
3300031854\|Ga0310904_11169803	Not Available	553	Open in IMG/M
3300031946\|Ga0310910_10508683	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300032017\|Ga0310899_10059125	Not Available	1432	Open in IMG/M
3300032211\|Ga0310896_10719209	Not Available	566	Open in IMG/M
3300033289\|Ga0310914_11362656	Not Available	612	Open in IMG/M
3300033419\|Ga0316601_100034814	All Organisms → cellular organisms → Bacteria → Proteobacteria	3557	Open in IMG/M
3300033433\|Ga0326726_11605422	Not Available	633	Open in IMG/M
3300033500\|Ga0326730_1013346	All Organisms → cellular organisms → Bacteria → Proteobacteria	1778	Open in IMG/M
3300034125\|Ga0370484_0045363	Not Available	1080	Open in IMG/M
3300034819\|Ga0373958_0137470	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	54.72%
Environmental	Environmental	45.28%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	54.72%
Terrestrial	Environmental → Terrestrial	40.57%
Aquatic	Environmental → Aquatic	4.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	36.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.92%
Freshwater	Environmental → Aquatic → Freshwater	3.77%
Peat	Environmental → Terrestrial → Peat	3.77%
Sediment	Environmental → Aquatic → Sediment	0.94%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	28.30%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	22.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.04%
Loam	Environmental → Terrestrial → Soil → Loam	10.38%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.55%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.77%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.94%
Ice	Environmental → Aquatic → Freshwater → Ice	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	28.30%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.04%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.77%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	8.49%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	6.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.66%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.89%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.89%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.89%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.94%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.94%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.94%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.94%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.94%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012680	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027031	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027979	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028665	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_3	Environmental	Open in IMG/M
3300030854	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB2 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033500	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF7AN SIP fraction	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_102449662	3300000550	Soil	YLHKPDAPNLEMPIDINDDGTLQTPLGELRKKAS*
F14TC_1028220553	3300000559	Soil	CWMGGARIYLHKPDAPNLDMPIDINDDGTLQTPLGELRKKAS*
JGI1027J12803_1092912891	3300000955	Soil	TDVGGNDEVFECWMGGAKMYLHKPDAPNLDMPIDINDDGTLQTPLGELRKKAS*
Ga0062591_1029047971	3300004643	Soil	EEFECWTGGGKIVLHTAGTDDLSIDINNDGTLDTPLGELKKKGN*
Ga0070676_110030021	3300005328	Miscanthus Rhizosphere	VPNLIGEGSDEFECWMSGDKIILHKPGAPNEDMPLDINLDGTIDTPVGEIKKKGN*
Ga0066388_1019608111	3300005332	Tropical Forest Soil	TAECWMDNEKIYLHKPGESSDQDIAIDINNDGTLETPMGELKKKGN*
Ga0070682_1004678622	3300005337	Corn Rhizosphere	ETFECWTGGEKIYLHQPANPTLDFPIDINNDGTLQTPLGEIRKKGN*
Ga0070689_1022288051	3300005340	Switchgrass Rhizosphere	EEVFECWIGGDRIYLHKAGTSDLDMPIDINNDGTLQTPLGEIKKKGT*
Ga0070678_1022231712	3300005456	Miscanthus Rhizosphere	GKATLTDPSGGGEEVECWTGGGKIYLHKTGDPADQAMPIDINNDGTLDTPFGEIKKKGN*
Ga0068867_1023166642	3300005459	Miscanthus Rhizosphere	FECWMGGEKIYLHKPGNSNLDMPIDINNDGTLQTPIGEIKKKGN*
Ga0068853_1014056141	3300005539	Corn Rhizosphere	WTGGEKIYLHQPSNPTLDMPIDINLDGTLQTPLGEIKKKGN*
Ga0068853_1020908321	3300005539	Corn Rhizosphere	WMSGDKIILHKPGAPNEDMPLDINLDGTIDTPLGEIKKKGN*
Ga0068855_1006670075	3300005563	Corn Rhizosphere	FRSGKATMTDLGGNDDIFECWMGGEKIYLHQPSNPNLDMPIDINLDGTLQTPLGEIKKKGN*
Ga0068855_1017227403	3300005563	Corn Rhizosphere	FRSGKATMTDLGGNDDIFECWMGGEKIYLHQPSNPNLDMPLDINLDGTLQTPLGEIKKKGN*
Ga0068857_1007187864	3300005577	Corn Rhizosphere	EVECWTGGGKIYLHKTGDPADQAMPIDINNDGTLDTPFGEIKKKGN*
Ga0068854_1014628541	3300005578	Corn Rhizosphere	EGSDEFECWMSGDKIILHKPGAPNEDMPLDINLDGTIDTPVGEIKKKGN*
Ga0068852_1020889982	3300005616	Corn Rhizosphere	ATVPNLIGEGSDEFECWMSGDKIILHKPGAPNEDMPLDINLDGTIDTPVGEIKKKGN*
Ga0068859_1002373471	3300005617	Switchgrass Rhizosphere	LLGDDDVFECWIKGDKVILHKPGESPDTDMPIDVNLDGTLQTPLGEIKKKGN*
Ga0068866_103603371	3300005718	Miscanthus Rhizosphere	LTDPSGGGEEVECWTGGGKIYLHKTGDPADQAMPIDINNDGTLDTPFGEIKKKGN*
Ga0074479_107401113	3300005829	Sediment (Intertidal)	WTGGEKVYLRQPGSPNLDMPIDINLDGTLQTPIGEIKKKGN*
Ga0068860_1001290541	3300005843	Switchgrass Rhizosphere	CWMSGDKIILHKPGAPNEDMPLDINLDGTIDTPVGEIKKKGN*
Ga0068860_1013941133	3300005843	Switchgrass Rhizosphere	WIKGDKVILHKPGESPDTDMPIDVNLDGTLQTPLGEIKKKGN*
Ga0075422_103525571	3300006196	Populus Rhizosphere	TIAAGLGDDEVMECWMMGDKIILHKPGEPSATDMPIDLNLDGSLQTPLGEIKKKGN*
Ga0075522_101941574	3300006638	Arctic Peat Soil	SGGEVLECWTGGGKIYPHKPRDPASQDMPLDINNDGTLDTPFGEIKKKGN*
Ga0079220_100710972	3300006806	Agricultural Soil	MGGGKIYLHKPGDDPKVDMPIDVNDDGTLQTPLGEIKRKGN*
Ga0075421_1003986831	3300006845	Populus Rhizosphere	GGGEEVECWMGGGKIYLHKPGEPASKDMPIDINNDGTLDTPFGEIKKKGN*
Ga0075425_1015338261	3300006854	Populus Rhizosphere	VECWTSGSKIILHKPGAPNEDMPLEINDDGTLDTPMGEVRKKSS*
Ga0075424_1015662992	3300006904	Populus Rhizosphere	VILGADEEFECWTGGGTIILHKAGESNATDMPIDVNNDGTVDTPMGEIRKKGN*
Ga0105106_102234351	3300009078	Freshwater Sediment	GGFGFASFTITFRAGKATLTDVGGNDEVFECWIGGEKIYLQKPGNSNLDMSIDINSDGTLQTPLGEVTKKGN*
Ga0105240_102120421	3300009093	Corn Rhizosphere	CWTGGGKIYLHKPGDPAGQDMPLDINNDGTLDTPFGEIKKKGN*
Ga0105240_105910004	3300009093	Corn Rhizosphere	GKATMTDLGGNDDIFECWMGGEKIYLHQPSNPNLDMPLDINLDGTLQTPLGEIKKKGN*
Ga0105240_108679711	3300009093	Corn Rhizosphere	NGGLGDDETFECWMGGGKIILHTPGSDPKTDMPLDINDDGTLQTPFGEIKRKGN*
Ga0105240_110676312	3300009093	Corn Rhizosphere	LGNMTIIFRAGKATLADPTGGGEEVECWTGGGKIYLHKPGDLASQDMPLDINNDGTLDTPFGEIKKKGN*
Ga0105245_126458072	3300009098	Miscanthus Rhizosphere	GGLGDDETLECWMGGGKIYLHKPGDDPKVDMPVDDNNHGTLQTPLGEIKRKGN*
Ga0111538_109942622	3300009156	Populus Rhizosphere	MLDKSGSKIILHKPGAPNEDMPIEINDDGTLDTPMGEVRKKSS*
Ga0105242_124299742	3300009176	Miscanthus Rhizosphere	MSGDKIILDKPGAPNEDMPLDINLDGTIDTPVGEIKKKGN*
Ga0105248_100641775	3300009177	Switchgrass Rhizosphere	DETFECWMGGGKITLHTPGGDPKTDVPIDINDDGTLQTPFGEIKRKGN*
Ga0105237_119034721	3300009545	Corn Rhizosphere	SGGLGDDETLECWMGGGKIYLHKPGDDPKVDMPIDVNDDGTLQTPLGEIKRKGN*
Ga0105249_130258472	3300009553	Switchgrass Rhizosphere	SGKATLADPSGGGEEVECWTGGGKIYLHKPGDPAGQDMPIDINNDGTLETPFGEIKKKGN
Ga0134127_112915751	3300010399	Terrestrial Soil	LGDNDETFECWTGGEKIYLHQPANPTLDFPIDINNDGTLQTPLGEIRKKGN*
Ga0105246_108781672	3300011119	Miscanthus Rhizosphere	SVPNLIGEGSDEFECWMSGDKIILHKPGAPNEDMPLDINLDGTIDTPVGEIKKKGN*
Ga0137382_113375261	3300012200	Vadose Zone Soil	NGEVFECWISGEKILLHQPGKSNMDIPIDINNDGTLQTPLGEIKKKGN*
Ga0136612_104528741	3300012680	Polar Desert Sand	MSGEKIYLHKPGESTDTDMPIDINNEGTLDTPFGEIKKKGN*
Ga0137413_111196751	3300012924	Vadose Zone Soil	SGQGEVLECWMSGDKIILHKPGQSNLDMPISINHDGTLDTALGEIKKKGN*
Ga0153915_120549791	3300012931	Freshwater Wetlands	VFQKKGHRWVTFPSGKATMTDMGGGDEAFECWMVGGKMILHKLGKSNLDMPIDINNDGSLQTPLGEIKKKGN*
Ga0157373_112040872	3300013100	Corn Rhizosphere	NEELECWMSGDKIILHKPGAPNEDMPLDINLDGTIDTPVGEIKKKGN*
Ga0157370_104273951	3300013104	Corn Rhizosphere	IFRSGKATMTDLGGNDDIFECWMGGEKIYLHQPSNPNLDMPIDINLDGTLQTPLGEIKKKGN*
Ga0157374_114513081	3300013296	Miscanthus Rhizosphere	EEVECWTGGGKIYLHKPGDPAGQDMPIEINNDGTLDTPFGEIKKKGN*
Ga0157378_121559291	3300013297	Miscanthus Rhizosphere	LIGEGSDEFECWMSGDKIILHKPGAPNEDMPLDINLDGTIDTPVGEIKKKGN*
Ga0157378_122600081	3300013297	Miscanthus Rhizosphere	TFTDPGGNDDVFECWMGGEKIYLHQPSNPTLDMPIDINLDGTLQTPLGEIKKKGN*
Ga0157372_128323691	3300013307	Corn Rhizosphere	GGLGDDETLECWMGGGKIYLHKPGDDPKVDMPIDVNDDGTLQTPLGEIKRKGN*
Ga0157375_115105061	3300013308	Miscanthus Rhizosphere	LADPTGGGEEVECWTGGGKIYLHKPGDPAGQDMPIDINNDGTLDTPFGEIKKKGN*
Ga0157375_137131471	3300013308	Miscanthus Rhizosphere	EDVFECWMSGEKIYMHQPSDPNLDMPIDINLDGTLQTPLGEVKKKGN*
Ga0163163_104108381	3300014325	Switchgrass Rhizosphere	DDTFECWMGGEKIYLHQPSNPTLDMPIDINLDGTLQTPLGEIKKKGN*
Ga0182019_107287282	3300014498	Fen	IVFRAGKATLADPSGEGEVLECWMSGDQIILHKPGQSKLDMPIAINNDGTLDTPMGEIRKKGN*
Ga0157376_104759172	3300014969	Miscanthus Rhizosphere	MTDPGGNDEVFECWIGGDRIYLHKAGSSDLDMPIDINNDGTLQTPFGEIKKKGN*
Ga0157376_118294421	3300014969	Miscanthus Rhizosphere	IGGGLGGDTETLECWMGGGKIYLHKPGDDPKVDMPIDINDDGTLQTPLGEIKLKGN*
Ga0132258_1000193222	3300015371	Arabidopsis Rhizosphere	VILGADEEFECWTGGGKIILHKAGESNATDMPIDVNNDGTVDTPMGEIRKKGN*
Ga0132256_1014234302	3300015372	Arabidopsis Rhizosphere	VILGTDEEFECWTGGGKIILHKAGESNATDMPIDVNNDGTVDTPMGEIRKKGN*
Ga0187776_102148152	3300017966	Tropical Peatland	MGGTEEFECWMEREKIYLHKPGEPPENDMPIDINNDGTLETPFGEIKKKGN
Ga0210384_107194731	3300021432	Soil	GKATMPDVGENDEVFECWMDGGKLFLHQPGKSNLDMPIDINNDGTLQTPLGEIKKKGN
Ga0209483_11309194	3300025862	Arctic Peat Soil	LRRKIRGSGGEVLECWTGGGKIYPHKPRDPASQDMPLDINNDGTLDTPFGEIKKKGN
Ga0207705_103495743	3300025909	Corn Rhizosphere	GNEEVFECWTGGGKVLLHKPSNANLDMPIDINDDGTLQTPLGEIKRKGN
Ga0207695_103172933	3300025913	Corn Rhizosphere	GGGAGDELECWMSGTRIILRKPGAPSEDMPIDINNDGTLDTPLGEIRKKGN
Ga0207695_110873272	3300025913	Corn Rhizosphere	LGNMTIIFRAGKATLADPTGGGEEVECWTGGGKIYLHKPGDLASQDMPLDINNDGTLDTPFGEIKKKGN
Ga0207662_105736243	3300025918	Switchgrass Rhizosphere	IAALLGDDDVFECWIKGDKVILHKPGESPDTDMPIDVNLDGTLQTPLGEIKKKGN
Ga0207652_109837682	3300025921	Corn Rhizosphere	PSGGGEEVECWTGGGKIYLHKPGDPAGQDMPIDINNDGSLDTPFGEIKKKGN
Ga0207652_117801241	3300025921	Corn Rhizosphere	RMYLHKPDAPNLDMPIDINDDGTLQTPLGEIRKKAS
Ga0207687_114414182	3300025927	Miscanthus Rhizosphere	KATVPNLIGEGSDEFECWMSGDKIILHKPGAPNEDMPLDINLDGTIDTPVGEIKKKGN
Ga0207700_116927612	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	NMTIIFRAGKATLADPTGGGEEVECWTGGGKIYLHKPGDLASQDMPLDINNDGTLDTPFGEIKKKGN
Ga0207706_116425902	3300025933	Corn Rhizosphere	DEFECWMSGDKIILHKPGAPNEDMPLDINLDGTIDTPVGEIKKKGN
Ga0207686_107647661	3300025934	Miscanthus Rhizosphere	GDKIILHKPGAPNEDMPLDINLDGTIDTPVGEIKKKGN
Ga0207711_100460061	3300025941	Switchgrass Rhizosphere	WMGGGKITLHTPGGDPKTDVPIDINDDGTLQTPFGEIKRKGN
Ga0207651_108562481	3300025960	Switchgrass Rhizosphere	SGDKIILHKPGAPNEDMPLDINLDGTIDTPVGEIKKKGN
Ga0207703_110564102	3300026035	Switchgrass Rhizosphere	GDDDTFECWMGGGKITLHTPGGDPKADVPIDINDDGILQTPFGEIKRKGN
Ga0207678_114443571	3300026067	Corn Rhizosphere	MTDPGGNEEVFECWIGGDRIYLHKAGTSDLDMPIDINNDGTLQTPLGEIKKKGN
Ga0207702_112236691	3300026078	Corn Rhizosphere	GGLGDDETFECWMGGGKIILHTPGSDPKTDMPLDINDDGTLQTPFGEIKRKGN
Ga0207698_100964113	3300026142	Corn Rhizosphere	ATVPNLIGEGSDEFECWMSGDKIILHKPGAPNEDMPLDINLDGTIDTPVGEIKKKGN
Ga0179587_107331831	3300026557	Vadose Zone Soil	KAIVNGGLGDDETFECWMGGGKIVLHTPGGDPKTDMPLDINDDGTLQTPFGEIKRKGN
Ga0208986_10196542	3300027031	Forest Soil	NDEVFECWMTGEKLLLHQPGRSNLDMPIDINNDGTLQTPLGEIKKKGN
Ga0209736_11285672	3300027660	Forest Soil	MTDVGGNDEVFECWMGGGKILLHQPAHANLDMPIDLNNDGTLQTPLGEIKKKGN
Ga0209073_101287222	3300027765	Agricultural Soil	MGGGKIYLHKPGDDPKVDMPIDVNDDGTLQTPLGEIKRKGN
Ga0209177_102150141	3300027775	Agricultural Soil	LECWMGGGKIYLHKPGDDPKVDMPIDVNDDGTLQTPLGEIKRKGN
Ga0209705_101275831	3300027979	Freshwater Sediment	GGFGFASFTITFRAGKATLTDVGGNDEVFECWIGGEKIYLQKPGNSNLDMSIDINSDGTLQTPLGEVTKKGN
Ga0268266_100301875	3300028379	Switchgrass Rhizosphere	IYLHKPGDDPKVDMPIDINDDGTLQTPLGEIKRKGN
Ga0268264_101542351	3300028381	Switchgrass Rhizosphere	GDKIMLHKPGAPNEDMPLDINLDGTIDTPVGEIKKKGN
Ga0268264_120180541	3300028381	Switchgrass Rhizosphere	WIKGDKVILHKPGESPDTDMPIDVNLDGTLQTPLGEIKKKGN
Ga0302160_100618222	3300028665	Fen	KATMTDPGGNDEVLECWFGGDKIYLHKPGNSSLDMPIDINNDGTLQTPLGEIKKKGN
Ga0075385_118665681	3300030854	Soil	MLDGGGKIILHTPGGDPKTDMPIDINDDGTLQTPFGEIKRKGN
Ga0170824_1077932991	3300031231	Forest Soil	LTGDGGEELECWTSGTKILLHKPGNPNLDMSIDINNDGTLDTPLGEIRKKGN
Ga0170824_1084346041	3300031231	Forest Soil	MGGGKIILHKPGQNSEMDLPLDLNKDGTIDTPFGEVKKKGD
Ga0302323_1031216081	3300031232	Fen	ECWMGGEKIYLHDPVHPNYDMAIDVNNDGTLQTPLGEIKKKGN
Ga0170820_153598052	3300031446	Forest Soil	GGEELECWTSGTKILLHKPGNPNLDMSIDINNDGTLDTPLGEIRKKGN
Ga0170818_1072286132	3300031474	Forest Soil	ECWMTGEKLLLHQPGKANLDMPIDINNDGTLQTPLGEIKKKGN
Ga0318561_101594841	3300031679	Soil	MTFRSGKATMTDAGGNDEVFECWMGGGRMYLHKPDAPNLDMPIDINDDGSLQTPLGEIRKKAS
Ga0318554_105295281	3300031765	Soil	ATMTDGGGNDEVFECWMGGGRMYLHKPDAPNLDMPIDINDDGSLQTPLGEIRKKAS
Ga0310904_111698031	3300031854	Soil	GARMYLHKPDAPNLDMPIDINDDGTLQTPLGEIRKKAS
Ga0310910_105086832	3300031946	Soil	RSGKATMTDAGGNDEVFECWMGGGRMYLHKPDAPNLDMPIDINDDGSLQTPLGEIRKKAS
Ga0310899_100591251	3300032017	Soil	ECWMGGGKVYLHKPGESQDIAIDINDDGTLQSPLGELKKKGNQ
Ga0310896_107192091	3300032211	Soil	GGARMYLHKPDAPNLDMPIDINDDGTLQTPLGELRKKAS
Ga0310914_113626562	3300033289	Soil	ATMTDAGGNDEVFECWMGGGRMYLHKPDAPNLDMPIDINDDGTLQTPLGELRKKAS
Ga0316601_1000348144	3300033419	Soil	GTTELECWSDGQRLYLHKAGDTAEQDMPIEINEDGTLDTPFGEVKRKGK
Ga0326726_116054222	3300033433	Peat Soil	CWMGGAKMYLHKPDAPNLDMPIDINDDGTLQTPLGELRKKAS
Ga0326730_10133464	3300033500	Peat Soil	DGEKIYLHKPGESTDTDMPIDINNDGTLETPFGEIKKKGN
Ga0370484_0045363_97_258	3300034125	Untreated Peat Soil	MMDIGGTSEFECWIGGGRIYLHEAGSSAEDIPLDINKDGTLDGPMGELKKKGN
Ga0373958_0137470_421_591	3300034819	Rhizosphere Soil	MKDAIGDNDTTLECWMKGDKIYLHQPGDAPSQDMPIDINDDGTLQTPIGELKKKGK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094071

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences