Basic Information | |
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Family ID | F094030 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 106 |
Average Sequence Length | 45 residues |
Representative Sequence | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAMK |
Number of Associated Samples | 97 |
Number of Associated Scaffolds | 106 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 36.79 % |
% of genes near scaffold ends (potentially truncated) | 97.17 % |
% of genes from short scaffolds (< 2000 bps) | 95.28 % |
Associated GOLD sequencing projects | 93 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.57 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (58.491 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere (7.547 % of family members) |
Environment Ontology (ENVO) | Unclassified (38.679 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (39.623 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 51.39% β-sheet: 0.00% Coil/Unstructured: 48.61% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.57 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Serpentine Soil Glacier Forefield Soil Surface Soil Peatlands Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Agricultural Soil Sugarcane Root And Bulk Soil Arctic Peat Soil Permafrost Soil Soil Soil Soil Hardwood Forest Soil Soil Soil Untreated Peat Soil Tropical Peatland Soil Tropical Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Soil Arabidopsis Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Plant Roots Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
P3_CLC_01253100 | 2124908041 | Soil | MESVLVAVHLLAATVWVGGSTALIFVGVPAIRTLEGDPRGRAGIAVLDQRSE |
JGI10216J12902_1144956191 | 3300000956 | Soil | MEGVLVAIHLLAASVWVGGSAALIFVGVPALRTLEGESRGRVMRELGLRW |
A3PFW1_101975251 | 3300001535 | Permafrost | VIAVLVAVHLIAAGIWFGGSTALIFVGVPAIRILDGEPRGRAMKELG |
A10PFW1_102711973 | 3300001538 | Permafrost | VTAVLVTVHLLAAGIWFGGSTALVFVGVPAIRTLDGEPRGRAMKELGLRWRPIGYG |
C688J35102_1186926412 | 3300002568 | Soil | VTGVLVAVHLLAAGIWFGGSTALVFVGVPAIRTVEGEQRGRAM |
C688J35102_1198592741 | 3300002568 | Soil | VTALFVTVHLLAAGIWFGGSTALVFVGVPAIRTLDGEPRSRAM |
soilH2_100426422 | 3300003324 | Sugarcane Root And Bulk Soil | VTAFFVTVHLLAAGVWFGGSTALVFVGVPAIRTLDGEPRGRAM |
Ga0062594_1018662242 | 3300005093 | Soil | VLDVLVAVHLLAATVWVGGSTALIFVGVPAIRILEGEPRGRAMKELGLRWRPL |
Ga0066823_101450971 | 3300005163 | Soil | VVVHLLAASVWVGGSTALIFVGVPAIRSLEGESRGRAMKELGLRWRPL |
Ga0066675_108192871 | 3300005187 | Soil | VLDILVAVHLLAAAVWVGGSTALIFVGVPAIRTLEGEPRGRAMKALGLRW |
Ga0070670_1020105822 | 3300005331 | Switchgrass Rhizosphere | VTAVLVVVHLLAATVWVGGSTALIFVGVPAIRTLEGEPRGRAMKELGL |
Ga0066388_1035883092 | 3300005332 | Tropical Forest Soil | VHEVFVIVHLLAAMVWVGGSIALVFAGVPAIRVLEGEPRGKAMRE |
Ga0070682_1010556431 | 3300005337 | Corn Rhizosphere | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAMRELGLRWRPIGYGAL |
Ga0070691_110943961 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAM |
Ga0070659_1010984022 | 3300005366 | Corn Rhizosphere | VTAVFVTVHLLAAGVWFGGSTALVFVGVPAIRTLDGEPRGRAMKELGLRWRPI |
Ga0070711_1011058232 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | VTAVLVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRG |
Ga0066686_109399592 | 3300005446 | Soil | VTAVLVTVHLLAAGIWFGGSTALVFVGVPAIRTLDGEPRGRAMKALGLRW |
Ga0070678_1008328701 | 3300005456 | Miscanthus Rhizosphere | VLDVLVAVHLLAATVWVGGSTALIFVGVPAIRILEGEPRG |
Ga0070707_1023060242 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | VTAVLVAIHLIAAGIWFGGSTALIFVGVPAIRILEGEPRGRAMKELGLRWR |
Ga0073909_104869071 | 3300005526 | Surface Soil | VTAVLVVVHLLAATVWVGGSTALIFVGVPAIRTLEGEPRGRAMKELG |
Ga0070741_109145492 | 3300005529 | Surface Soil | MIAVLVTVHLLAAGIWFGGSTALVFVGVPAIRQLDGEPRGRAMRELGLRW |
Ga0070684_1015594451 | 3300005535 | Corn Rhizosphere | VTAVFVTVHLLAAGVWFGGSTALVFVGVPAIRTLEGEPRG |
Ga0068853_1014994061 | 3300005539 | Corn Rhizosphere | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAMKELGLRWRPI |
Ga0068855_1017066562 | 3300005563 | Corn Rhizosphere | VEEAVVIVHLLAASVWLGGSVALVFAGVPAIRVLEGDPRGRAMKELGLRW |
Ga0070762_105745052 | 3300005602 | Soil | VIVHLLAACIWVGGSIALVFAGVPAIRVLEGEPRGRAMREL |
Ga0066905_1002688501 | 3300005713 | Tropical Forest Soil | VLDVLVTVHLLAAAVWVGGSTALIFVGVPAIRTLEGEPRGRA |
Ga0066903_1056719671 | 3300005764 | Tropical Forest Soil | VEEFIVIVHLLAAIVWVGGSIALVFVGVPAIRVLEGAPRGRAMHE |
Ga0097691_10749602 | 3300006055 | Arctic Peat Soil | VIAVLVAVHLIAAGIWFGGSTALIFVGVPAIRILDGEPRGRAMKELGL |
Ga0097621_1006112901 | 3300006237 | Miscanthus Rhizosphere | VLDVLVAVHLLAATVWVGGSTALIFVGVPAIRILEGEPRGRAMKELGLRWR |
Ga0079220_117048792 | 3300006806 | Agricultural Soil | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAIRTLDREPRGRAMK |
Ga0079219_111551431 | 3300006954 | Agricultural Soil | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAIRTLDGEPRGRAMKELGLRWRPI |
Ga0105251_101580071 | 3300009011 | Switchgrass Rhizosphere | VEEVVVIVHLLAATIWVGGSIALVFAGVPAIRVLE |
Ga0105240_115270331 | 3300009093 | Corn Rhizosphere | VTAVLVAIHLIAAGIWFGGSTALIFVGVPAIRILEGEPRG |
Ga0105245_106709651 | 3300009098 | Miscanthus Rhizosphere | VTAVLVVVHLLAATVWVGGSTALIFVGVPAIRTLEGEPRGRAMKELGLRWRPL |
Ga0126309_103758153 | 3300010039 | Serpentine Soil | MQGVLVAVHLLAAAVWVGGSVALVFVGVPAIRTLDGDPRGRA |
Ga0126373_110732141 | 3300010048 | Tropical Forest Soil | VEGVLVAVHLLAAAVWVGGSTALIFVGVPAVRGLDEPARGRAMRELG |
Ga0126378_109042403 | 3300010361 | Tropical Forest Soil | VEGVLVAVHLLAAAVWVGGSTALIFVGVPAVRGLDEPARGRAMRELGLRWRPL |
Ga0126377_110267152 | 3300010362 | Tropical Forest Soil | VHDVIVIVHLFAAIVWVGGSIALVFAGVPAIRVLEGEPR |
Ga0126379_102936064 | 3300010366 | Tropical Forest Soil | VITFLRAVHLISAAVWIGGSVALVVAGVPAIRTLEG |
Ga0136449_1007829003 | 3300010379 | Peatlands Soil | VENVVVIVHLLAASVWVGGSVALVFAGVPAIRVLEGEPRGR |
Ga0134127_130911281 | 3300010399 | Terrestrial Soil | VTAVFVIVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAMKELGL |
Ga0120159_10205225 | 3300012014 | Permafrost | VTAVLVTVHLLAAGIWFGGSTALVFVGVPAIRTLDGEPRG |
Ga0120139_10133374 | 3300012019 | Permafrost | VTAVLVVVHLLAATVWVGGSTALIFVGVPAIRTLDGEPRGRAMKELG |
Ga0137380_116250982 | 3300012206 | Vadose Zone Soil | MEVVVVIHLLAACIWVGGSIALVVAGVPAIRILDGEPRQRAMR |
Ga0137381_113563102 | 3300012207 | Vadose Zone Soil | VTAVLVAVHLIAAGIWFGGSTALVFVGVPAIRTLRVHSC* |
Ga0137379_113549621 | 3300012209 | Vadose Zone Soil | MEVVVVIHLLAACIWVGGSIALVVAGVPAIRILDGEPRQRAM |
Ga0137366_105164211 | 3300012354 | Vadose Zone Soil | VTGVLVAVHLIAAGVWFGGSTALVFVGVPAIRTLEGEPRGRAMRE |
Ga0164300_107538421 | 3300012951 | Soil | VVGVLVAVHLLAAAVWVGGSTALIFVGVPAIRVLEGEPRGRAMKELG |
Ga0164303_108948432 | 3300012957 | Soil | VEGVLVVVHLLAASVWVGGSTALVFAGVPAIRTLEGEP |
Ga0164301_114946871 | 3300012960 | Soil | VTAVLVVVHLLAATVWVGGSTALIFVGVPAIRALE |
Ga0164307_104980071 | 3300012987 | Soil | VTSVLVAVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAMRELGLRW |
Ga0164305_110413802 | 3300012989 | Soil | VTAVLVTVHLLAAGIWFGGSTALVFVGVPAIRTLDGEPRSRVMKE |
Ga0157370_106377531 | 3300013104 | Corn Rhizosphere | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRA |
Ga0157370_109068401 | 3300013104 | Corn Rhizosphere | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAMKELGLRWRP |
Ga0157370_120099121 | 3300013104 | Corn Rhizosphere | VTSVIVTVHLLAAGVWFGGSTALVFVGVPAIRTLEGEPRGRAM |
Ga0157378_106535261 | 3300013297 | Miscanthus Rhizosphere | VTAVLVTIHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAMKELGLRWRPVGYGALL |
Ga0120147_10445112 | 3300013758 | Permafrost | VTPVLVVVHLLAATVWVGGSTALIFVGVPAIRTLD |
Ga0120125_10926771 | 3300014056 | Permafrost | VTAVLVTVHLLAAGIWFGGSTALVFVGVPAIRTLEVEPRSRATKELG |
Ga0167648_10983362 | 3300015171 | Glacier Forefield Soil | VTAVLVTVHLIAAGIWFGGSTALIFVGVPAIRVLDG |
Ga0132258_128764461 | 3300015371 | Arabidopsis Rhizosphere | VHEIFVIVHLLAAMVWVGGSIALVFAGVPAIRVLEGEPRGKAMKE |
Ga0187785_102036621 | 3300017947 | Tropical Peatland | VTAVLVAVHLIAAGIWFGGSTALVFVGVPAIRTLEGAPRARVMRELGLRWRPIGYGSLLV |
Ga0206354_117207531 | 3300020081 | Corn, Switchgrass And Miscanthus Rhizosphere | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAMK |
Ga0193699_101852412 | 3300021363 | Soil | VTAVLVVVHLLAATVWVGGSTALIFVGVPAIRTLEGEPRG |
Ga0213876_105846822 | 3300021384 | Plant Roots | VTGSLVAVHLVAAGIWFGGSTALVFVGVPAIRTLDG |
Ga0210384_112818432 | 3300021432 | Soil | MEEVIVIIHLLAASVWLGGSIALVFAGVPAIRVLEGEARGRAMKELGLRWRPVGYGSLV |
Ga0126371_137557621 | 3300021560 | Tropical Forest Soil | VIGVLVTVHLLAAAVWVGGSTALIFVGVPVLRKLEGPERGRAMRELG |
Ga0179589_105628921 | 3300024288 | Vadose Zone Soil | VIGVLVTVHLLAAAVWFGGSTALIFVGVPAIRILDGEPRGQAMKELGLRW |
Ga0207692_101694932 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | VTAVLVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAMKAL |
Ga0207695_102369721 | 3300025913 | Corn Rhizosphere | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAMKELGLRWRPIGYGAL |
Ga0207671_112316642 | 3300025914 | Corn Rhizosphere | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAVRTLEGEPRGRA |
Ga0207693_106586262 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | VTAVLVTVHLLAAGIWFGGSTALVFVGVPAIRQLEGDARGRAMKQLGFLW |
Ga0207660_104315412 | 3300025917 | Corn Rhizosphere | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAMKELGLRWRPIGY |
Ga0207700_110087331 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | VIALLVTIHLLAAAVWVGGSTALIFVGVPAVRVLEGEPRSRAMKEL |
Ga0207690_106109911 | 3300025932 | Corn Rhizosphere | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAMKELGLRWRPIGYGALLV |
Ga0207665_100679116 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | VTAVLVTIHLVAAGIWFGGSTALVFVGVPAIRTLEGEPR |
Ga0207667_113428771 | 3300025949 | Corn Rhizosphere | VEEAVVIVHLLAASVWLGGSVALVFAGVPAIRVLEGDPRGRAMKELGLRWR |
Ga0207640_108739422 | 3300025981 | Corn Rhizosphere | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAIRTLEG |
Ga0207677_109533132 | 3300026023 | Miscanthus Rhizosphere | VVVHLLAAAVWVGGSTALVFVGVPAIRTLEGEPRGRAMKELGLRWRPL |
Ga0207639_100847625 | 3300026041 | Corn Rhizosphere | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRVRAMKELGLRWRPIGYGALLV |
Ga0207639_112709851 | 3300026041 | Corn Rhizosphere | VTAVLVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGHAMKQLGLLWRP |
Ga0207678_118925771 | 3300026067 | Corn Rhizosphere | MALLVTVHLLAAGVWFGGSTALVFVGVPAIRTLDGEP |
Ga0207702_109367693 | 3300026078 | Corn Rhizosphere | VTAVLVAVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGTAMKKLGLLWRPLGYGALL |
Ga0207698_101660801 | 3300026142 | Corn Rhizosphere | VTAIFVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAMR |
Ga0209474_106893682 | 3300026550 | Soil | VEEVVVIIHLLAAMVWVGGSVALVFAGVPAIRVLEG |
Ga0247827_107778441 | 3300028889 | Soil | VADVLRIVHLLAAGVWLGGTVALVFAGVPAIRTLEGEARGRT |
Ga0265327_101092963 | 3300031251 | Rhizosphere | VTAVLVTVHLLAAGIWFGGSTALVFVGVPAIRSLDGEPR |
Ga0307373_105114291 | 3300031672 | Soil | VIIHLLAASVWLGGSIALVFAGVPAIRVLEGDPRGRAMKELGLRWRPIG |
Ga0318493_102338681 | 3300031723 | Soil | VIIHLLAAMIWVGGSVALVFVGVPAIRILEGEPRGRAMRELG |
Ga0307468_1022476872 | 3300031740 | Hardwood Forest Soil | VHEVFVIVHLLAAMVWVGGSVALVFAGVPAIRVLEGEPRG |
Ga0318502_108448752 | 3300031747 | Soil | VIVHLLAATVWVGGSVALVFAGVPAIRVLEGEHRGRAMRELG |
Ga0318568_105132482 | 3300031819 | Soil | VIIHLLAAMIWVGGSVALVFVGVPAIRILEGEPRGRAM |
Ga0306919_109786062 | 3300031879 | Soil | VTAVLVTIHLLAAAVWVGGSTALIFVGVPAVRSLEGEPRSRA |
Ga0318551_101127273 | 3300031896 | Soil | VVGVLVAVHLLAAAVWVGGSTALIFVGVPVIRTLDGPERG |
Ga0308176_105965241 | 3300031996 | Soil | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAMKELGL |
Ga0308176_115785052 | 3300031996 | Soil | VTAIFVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAMRELGLRWRPIGYG |
Ga0308176_118261552 | 3300031996 | Soil | VTGVLVAVHLVAAGIWFGGSTALVFVGVPAIRTLEAD |
Ga0308176_123474222 | 3300031996 | Soil | VTALFVTVHLLAAGIWFGGSTALVFVGVPAIRTLDG |
Ga0308173_108623943 | 3300032074 | Soil | VTAVFVTVHLLAAGIWFGGSTALVFVGVPAIRTLEGEPRGRAMKELGLRWRPIG |
Ga0335080_102984511 | 3300032828 | Soil | VTAFLVVVHLLSAGIWFGGSTALVFVGVPAVRTLE |
Ga0335074_115858712 | 3300032895 | Soil | VTAVLVGIHLLAAGVWFGGSTALVFVGVPAVRTLE |
Ga0335071_100245958 | 3300032897 | Soil | VTAFLVVVHLLSAGIWFGGSTALVFVGVPVVRTLEGEARGRAMK |
Ga0335071_109889972 | 3300032897 | Soil | VTAFLVVVHLLSAGIWFGGSTALVFVGVPAIRTLDGEPRGRAMKV |
Ga0335083_108257461 | 3300032954 | Soil | LEVVVIIHLLAAMVWVGGSVALVFVGVPAIRVLEGEP |
Ga0335083_112297451 | 3300032954 | Soil | VTAVLVTVHLLAAGIWFGGSTALVFVGVPAIRQLE |
Ga0316628_1042566052 | 3300033513 | Soil | VTVVLVTVHLLAAGIWFGGSTALVFVGVPAIRTLDGEPRGRAMRALGLRWRPIGYGALVVAA |
Ga0370501_0018480_1853_2008 | 3300034195 | Untreated Peat Soil | VTAVLVTAHLLAAGIWFGGSTALVFVGVPAIRELDGESRGRAMKALGLRWRP |
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