NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F093992

Metagenome Family F093992

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F093992
Family Type Metagenome
Number of Sequences 106
Average Sequence Length 47 residues
Representative Sequence FLEQLGGKKIQKTRLREHEPRTITEAQEAKAKEVMAIDYQNGWCKELISSKI
Number of Associated Samples 78
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 99.06 %
% of genes from short scaffolds (< 2000 bps) 90.57 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction Yes
3D model pTM-score0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (76.415 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(47.170 % of family members)
Environment Ontology (ENVO) Unclassified
(96.226 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(83.962 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.
1JGI24528J20060_10036382
2JGI24528J20060_10071431
3JGI24528J20060_10122531
4JGI24514J20073_10155972
5JGI24520J20079_10030403
6JGI24515J20084_10252462
7JGI25129J35166_10185031
8JGI25131J35506_10134921
9JGI25131J35506_10659042
10JGI25133J35611_101104071
11Ga0066866_102884241
12Ga0081592_11904392
13Ga0068470_16129232
14Ga0068502_12685691
15Ga0068502_14154201
16Ga0068502_19339942
17Ga0068482_17147141
18Ga0068481_12975052
19Ga0068503_103849241
20Ga0068503_104392741
21Ga0068503_105322161
22Ga0068493_103507522
23Ga0098033_11552051
24Ga0098044_13297302
25Ga0066376_103130331
26Ga0098051_11364492
27Ga0098034_11871392
28Ga0098041_10160523
29Ga0098064_1202261
30Ga0099959_11488912
31Ga0098052_10782931
32Ga0114898_10899511
33Ga0114899_10058471
34Ga0114904_10204272
35Ga0114904_10757112
36Ga0114905_10598791
37Ga0114903_10743812
38Ga0114902_10174452
39Ga0114909_10436352
40Ga0114906_10222881
41Ga0114906_12221811
42Ga0105228_1282072
43Ga0105236_10331121
44Ga0105236_10469831
45Ga0105173_10078732
46Ga0098049_11895051
47Ga0098056_12232832
48Ga0098061_10310992
49Ga0098047_101494942
50Ga0114934_100310891
51Ga0163108_109965821
52Ga0164320_105638831
53Ga0164313_113169402
54Ga0181432_12850242
55Ga0206685_103511881
56Ga0207900_1062262
57Ga0208670_1148581
58Ga0207878_1306772
59Ga0207889_10091442
60Ga0207889_10097521
61Ga0207907_1227541
62Ga0207902_10343491
63Ga0207902_10434721
64Ga0207897_1186601
65Ga0207898_10162261
66Ga0207892_10147471
67Ga0207906_10160792
68Ga0208012_10616131
69Ga0207887_10102341
70Ga0207887_10700722
71Ga0208668_10647852
72Ga0208553_10372832
73Ga0209349_11670622
74Ga0209644_10258282
75Ga0209644_10505332
76Ga0209644_10542891
77Ga0209644_10632841
78Ga0209644_10774512
79Ga0209644_10885231
80Ga0209644_11518951
81Ga0207884_10430002
82Ga0207884_10757242
83Ga0208179_10173111
84Ga0208813_10094254
85Ga0208684_10077351
86Ga0209757_100062653
87Ga0209757_100335772
88Ga0256381_10462152
89Ga0256380_10212032
90Ga0256380_10295241
91Ga0257111_12020552
92Ga0257111_12032392
93Ga0310120_104083552
94Ga0310124_105287782
95Ga0315318_107092902
96Ga0310344_105203012
97Ga0315329_105903352
98Ga0310345_108131123
99Ga0310345_110589111
100Ga0310345_123342541
101Ga0310342_1014349842
102Ga0310342_1016625132
103Ga0310342_1023175772
104Ga0326741_060451_506_634
105Ga0326748_010133_1_129
106Ga0326748_044943_473_619
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 20.00%    β-sheet: 10.00%    Coil/Unstructured: 70.00%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

5101520253035404550FLEQLGGKKIQKTRLREHEPRTITEAQEAKAKEVMAIDYQNGWCKELISSKISequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.39
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains




 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
23.6%76.4%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Marine
Deep Ocean
Seawater
Marine
Marine Oceanic
Marine
Seawater
Marine
Seawater
Filtered Seawater
Seawater
Diffuse Hydrothermal Fluids
Marine Sediment
Seawater
Deep Subsurface
47.2%14.2%6.6%3.8%3.8%2.8%7.5%2.8%2.8%2.8%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI24528J20060_100363823300001721MarineLGGGKIQKTRLREHEPRTITEAQEAKAKKVMAIDYKNGWC*
JGI24528J20060_100714313300001721MarineEHGPRTITEAQKAKAKEVMAIDYKNGWCKELIPIKM*
JGI24528J20060_101225313300001721MarinePFLEQLGGKKIQKTRLREHTPPVITKAQEAKAKEVMAIDYKNGWCKELISTKI*
JGI24514J20073_101559723300001731MarineKLLPFFEQLGGKKIQKTRLREHGPRTITEAQEAKAKEVMAIDYQNGWC*
JGI24520J20079_100304033300001735MarineFLEQLGGKKIQKTRLREHEPRTITEAQEAKAKEVMAIDYQNGWCKELISSKI*
JGI24515J20084_102524623300001743MarineKKIQKTRLREHAPPVITKEQEAKAKEVMAIDYAQEAKAKEVMAIDYQNGWCKELISTKI*
JGI25129J35166_101850313300002484MarineKLLPLLEQWGGKKIQKTRLREHSPPIITEAQTRKAKEVMAVDYQNGWCKELISPKI*
JGI25131J35506_101349213300002511MarineGKKXXKTRLREHPARVITKAQEAKAREVMAVDYENGWCKELISTKI*
JGI25131J35506_106590423300002511MarineKLLPFFEQLGGKKIQKTRLRGHEPRTITEAQKAKAKEVMAIDYKNGWCKELISSKI*
JGI25133J35611_1011040713300002514MarineIDTNLLPFLEQLGGKKIQKTRLREHRPPIITPEQEAKAKEVMAIDYKNGWCKELISSKI*
Ga0066866_1028842413300005514MarineLPFLEQLGGKKIQKTRLREHEPRIITKEQEAKAREVMAVDYQNGWCKELISTKI*
Ga0081592_119043923300006076Diffuse Hydrothermal FluidsGGKIQKTRLREHPSRVITKEQEAKAKEVMAIDYQNGWCKELISTKI*
Ga0068470_161292323300006308MarineGGKKIQKTRLREHEPRTITEAQEAKAREVMAIDNQNGWCKELISSKI*
Ga0068502_126856913300006336MarineMNEIDTKLLPFFEQLGGKKIQKTRLREHGTRTITEAQEAKAKEVMAIDYKNGWYTK*
Ga0068502_141542013300006336MarineLLPFLEQLGGGKIQKTRLREHTPPVITKAQEAKAKEVMAIDYENGWCKELISTKI*
Ga0068502_193399423300006336MarinePPRVITKAQETRAKEVMAIDYENGWCKQLISTKI*
Ga0068482_171471413300006338MarineFFEQLGGKKIQKTRLREHPSRIITEAQKEKAKEVMAIDYKNGWCKELISSKI*
Ga0068481_129750523300006339MarineKIQKTRLREHSPRVITKAQEAKAKEVMAVDYENGWCKQLISTKI*
Ga0068503_1038492413300006340MarineGGKKIQKTRLRKHAPRTITEAQEAKAKEVMAIDYQNGWCKELISSKI*
Ga0068503_1043927413300006340MarinePFLEQLGGGKIQKTRLREHTPRVITEAQEAKAREVMAIDYKNGWCKELISTKI*
Ga0068503_1053221613300006340MarineEHPPRVITREQEAKAKEVLAIDYQNGWCKELIYTKI*
Ga0068493_1035075223300006341MarineGGKIQKTRLREHPSRVITEAQEAKAKEVMAIDYQNGWCKELISTKI*
Ga0098033_115520513300006736MarineKIQKTRLREHEPRTITDAQKAKAKEVMAIDYENGWYK*
Ga0098044_132973023300006754MarineFLEQLGGKKIQKTRLREHEPRTITKAQEAKAREVMAIDYKNGWCKELISSKI*
Ga0066376_1031303313300006900MarineKLLPFFEQLGGGKIQKTRLREHPSRVVTETQKTKAKEVMAIDYQNGWCNKLISSKI*
Ga0098051_113644923300006924MarineKLLPFLEQLGGGKIQKTRLREQGTRTITEAQTMKAKEVMAIDYKNGWC*
Ga0098034_118713923300006927MarineLEQLGGKKIQKTRLREHEPRTITEAQEAKAREVMAIDYKNGWCKELISSKI*
Ga0098041_101605233300006928MarineHRPPTFTKEQEAKAREVMAVDYQNGWCKELISTKI*
Ga0098064_12022613300006988MarineKLLPFLEQLGGKKIHKTRLREHEPRTITKEQEAKAREVMAVDYKNGWCKELISSKI*
Ga0099959_114889123300007160MarineKIQKTRLREHEPRTITEAQEAKAKEVMAIDYQNGWCKELISSKI*
Ga0098052_107829313300008050MarineKIQKTRLREHPPRVITKEQEAKAKEVMAIDYQNGWCKELISTKI*
Ga0114898_108995113300008216Deep OceanTKLLPFLEQLGGKKIQKTRLREHEPRTITKEQEAKAREVMAIDYQNGWCKELIPIKM*
Ga0114899_100584713300008217Deep OceanKIQKTRLREHRARVITEAQEAKAKEVMAIDYENGWCKELISTKI*
Ga0114904_102042723300008218Deep OceanQKTRLREHRARVITEAQEAKAKEVMAIDYENGWCKELISTKI*
Ga0114904_107571123300008218Deep OceanKKIQKTRLREHSAKVITKEQEAKAKEVMAVDYKNGWCKELISTKI*
Ga0114905_105987913300008219Deep OceanTKLLPFLEQLGGKKIQKTRLREHGTRIITEAQEAKAREVMAIDYKNGWCKELIPAKM*
Ga0114903_107438123300009412Deep OceanREHRARVITEAQEAKAKEVMAIDYENGWCKELISTKI*
Ga0114902_101744523300009413Deep OceanKKIQKTRLREHRARVITEAQEAKAKEVMAIDYENGWCKELISTKI*
Ga0114909_104363523300009414Deep OceanTKLLPFLEQLGGGKIQKTRLREHEPRTITEAQEAKAREVMAIDYKNGWCNELIPDKM*
Ga0114906_102228813300009605Deep OceanIDTKLLPFLEQLGGKKIQKTRLREHGTRIITEAQEAKAREVMAIDYKNGWCKELIPAKM*
Ga0114906_122218113300009605Deep OceanTHLLPFVEPLGGKKIQKTRLRDHTPRVITKAQKVNAKEVMAIDYKNGWCKELISTKI*
Ga0105228_12820723300009613Marine OceanicTKLLPFLEQLGGGKIQKTRLREHPPRIITKAQEAKAKEVMAVDYENGWCKELIPIKM*
Ga0105236_103311213300009619Marine OceanicKIQKTRLREHEPRTITEAQEAKARKVMAIDYKNGWCKELISSKI*
Ga0105236_104698313300009619Marine OceanicGGGKIQKTRLREHPPRVITEAQEAKAKEVMAIDYKNGWCNQLISTKI*
Ga0105173_100787323300009622Marine OceanicPFLEQLGGKKIQKTRLREHEPRTITEAQKAKAKEVMAIDYKNGWCNELICSRI*
Ga0098049_118950513300010149MarineHPPRVITAAQEAKAKEVMAIDYKNGWCNQLISTEI*
Ga0098056_122328323300010150MarineFLEQLGGGKIQKTRLREHRARVITKEQEAKAKEVMAIDYKNGWCKELISTKI*
Ga0098061_103109923300010151MarineLLPFLEQLGGKKIQKTRLREHQPPTITKEQEAKAREVMAVDYQNGWCKELISTKI*
Ga0098047_1014949423300010155MarineLPFLEQLGGKKIQKTRLREHEPRIITEAQEAKAREVMAIDYKNGWCKELIPAKM*
Ga0114934_1003108913300011013Deep SubsurfaceREHPARSITKAQEEKATEVMAIDYKNGWCKELISTKI*
Ga0163108_1099658213300012950SeawaterQLGGKKIQKTRLREHPPRIITEGQEAKAKEVMAIDYEKGWCNQLISTKI*
Ga0164320_1056388313300013098Marine SedimentKKIQKTRLREHPARVITKAQEAKAKEVMAIDYQNGWCKELISSKI*
Ga0164313_1131694023300013101Marine SedimentFLEQLGGKKIQKTRLREHPARIITEAQEAKAKEVMAIDYENGWCKELISTKI*
Ga0181432_128502423300017775SeawaterKTRLRGHEPRTITKEQEAKAKEVMAIDYQNGWCKELISSKI
Ga0206685_1035118813300021442SeawaterGKIQKTRLREHAPRTITEAQKAKAREVMAIDYKNGWC
Ga0207900_10622623300025029MarineEHAPRTITEAQKAKAKEVMAIDYQNGWCKELISSKI
Ga0208670_11485813300025038MarineTKLLPFLEQLGGKKIQKTRLREHQPPTITKEQEAKAREVMAVDYQNGWCKELISTKI
Ga0207878_13067723300025039MarineLLPFLEQLGGKKIQKTRLREHGTRTITKEQEAKAREVMAIDYQNGWCKELIPIKM
Ga0207889_100914423300025042MarineLPFLEQLGGKKIQKTRLREHPPRIITTAQEAKAKEVMAIDYKNGWCKELISTKI
Ga0207889_100975213300025042MarineFLEQLGGGKIQKTRHHGNHPPAVITEAQEAKAREVMAIDYKNGWYTK
Ga0207907_12275413300025043MarineGGGKIQKTRLREHPPRIITKAQEAKAKEVMAIDYQNGWC
Ga0207902_103434913300025046MarineFLEQLGGKKIQKTRLREHEPRTITEAQEAKAKEVMAIDYQNGWCKELISSKI
Ga0207902_104347213300025046MarineGGKKIQKTRLREHPSRIITEAQKEKAKEVMAIDYQNGWCKELIPSKM
Ga0207897_11866013300025047MarineHAPRTITEAHEAKAREVMAIDYKNGWCKELISSKI
Ga0207898_101622613300025049MarineFLEQLGGKKIQKTRLREHPPRVITKEQEAKAKEVMVIDYQNGWCKELIPSKM
Ga0207892_101474713300025050MarineIDTKLLPFLEKLGGKKIQKTRLREHAPPVITKAQEAKAKEVMAIDYKNGWYQSKK
Ga0207906_101607923300025052MarineRLREHTPPVITKAQEAKAKEVMAIDYQNGWCKELISTKI
Ga0208012_106161313300025066MarineKIQKTRLREHEPRTITKAQEAKAREVMAIDYENGWYK
Ga0207887_101023413300025069MarineGNHPPAVITASQITKAKEVMAVDYQNGWCKELIYTKI
Ga0207887_107007223300025069MarineTRLREHPPRVISKTQEAKAKEVMAIDYQNGWCKELISTKI
Ga0208668_106478523300025078MarineLGGKKIQKTRLREHPPRVITEAQEAKAKEVMAIDYKNGWCNQLISTKI
Ga0208553_103728323300025109MarineLPFLEQLGGKKIQKTRLREHGPRTITEAQEAKAREVMAIDYKNGWCKELISSKI
Ga0209349_116706223300025112MarineTRLREHEPRTITEAQEAKAREVMAIDYKNGWCKELIPIKM
Ga0209644_102582823300025125MarineNLLPFLEQLGGGKIQKTRLREHPPRVITEAQEAKAREVMAVDYENGWCKELISTKI
Ga0209644_105053323300025125MarineIDTKLLPFLEQLGGGKIQKTRLREHPGRVITEAQETKAKEVMAIDYKNGWCK
Ga0209644_105428913300025125MarineFLEKLGGGKIQKTRHHGNHPPRVITPAQITKAKEVMAIDYKNCWCKELISTKI
Ga0209644_106328413300025125MarineKLLPFLEQLGGKKIQKTRLREHPPRIITKAQEAKAKEVMAVDYENGWCKELISTKI
Ga0209644_107745123300025125MarineKKIQKTRLREHPPRVITKEQEAKAKEVMAIDYQNGWCKQLIPSKM
Ga0209644_108852313300025125MarinePFLEKLGGGKIQKTRLREHPSRVITEAQEAKAKEVMAVDYQNGWCKELISTKI
Ga0209644_115189513300025125MarineLPFLEQLGGKKIQKTRLREHEPRTITEAQKAKAREVMAIDYKNGWYTK
Ga0207884_104300023300025236Deep OceanRLREHPPRVITEAQKEKAKEVMAIDYQNGWCKELISTKI
Ga0207884_107572423300025236Deep OceanRLREHGSRTITEAQKVKAREVMAIDYQNGWCNELIPDKM
Ga0208179_101731113300025267Deep OceanFLEQLGGKKIQKTRLREHGTRTITEAQEAKAREVMAIDYENGWCKELIPAKM
Ga0208813_100942543300025270Deep OceanQKTRLREHRARVITEAQEAKAKEVMAIDYENGWCKELISTKI
Ga0208684_100773513300025305Deep OceanEHRARVITEAQEAKAKEVMAIDYENGWCKELISTKI
Ga0209757_1000626533300025873MarineEHAPRVITEAQEAKAKEVMAIDYKNGWCKELISTKI
Ga0209757_1003357723300025873MarineLEQLGGKKIQRTRLREHEPRTITEAQEAKAKEVMAIDYQNGWCKELISSKI
Ga0256381_104621523300028018SeawaterIQKTRLREHEPRTITKEQEAKAREVMAIDYQNGWCKELISSKI
Ga0256380_102120323300028039SeawaterKLLPFLEQLGGKKIQKTRLREHRARVITEAQEAKAKEVMAIDYENGWCKELISTKI
Ga0256380_102952413300028039SeawaterEQLGGGKIQKTRLREHEPRTITKEQEAKAREVMAIDYQNGWCKELISSKI
Ga0257111_120205523300028535MarineQLGGGKIQKTRLREHPPRIITKAQEAKAKEVMAIDYQNGWC
Ga0257111_120323923300028535MarineGGKKIQKTRLREHPPRIITKAQEAKAKEVMTIDYQNGWCKELISTKI
Ga0310120_1040835523300031803MarineRLREHPPRVITKEQEAKAKEVMAIDYQNGWCKELISTKI
Ga0310124_1052877823300031804MarineKTRLREHAPPVITEAQKAKAKEVMAIDYQNGWCKELISSKI
Ga0315318_1070929023300031886SeawaterDTKLLPFLEQLGGGKIQKTRLREHQPRTITKEQEAKAKEVMAIDYKNGWCK
Ga0310344_1052030123300032006SeawaterDTKLLPFLEQLGGKKIQKTRLREHQSPIITKEQEAKARKVMAVDYQNGWCKELISPKI
Ga0315329_1059033523300032048SeawaterLREHPPRVITKEQEAKAKEVMAIDYQNGWCKELISTKI
Ga0310345_1081311233300032278SeawaterQLGGKKIQKTRLREHPPRIITEAQEAKAKEVMAIDYKNGWYK
Ga0310345_1105891113300032278SeawaterTRLREHGTRTITEAQEAKAKEVMAIDYKNGWCKELISSKI
Ga0310345_1233425413300032278SeawaterLEQLGGGKIQKTRLREHAPPVITKAQEAKAKEVMAIDYHNGWCKELISTKI
Ga0310342_10143498423300032820SeawaterGGGKIQKTRLREHPSRVITKEQEAKAKEVMAIDYQNGWCKELISTKI
Ga0310342_10166251323300032820SeawaterGGGKIQKTRLREHPARIITEAQEAKAKEVMAIDYENGWCKELISTKI
Ga0310342_10231757723300032820SeawaterEQLGGKKIQKTRLREHSPRVITKAQEAKAKEVMAVDYENGWCKQLISTKI
Ga0326741_060451_506_6343300034654Filtered SeawaterQKTRLREHPPRVITKTQKEKAKEVMAIDYQNGWCNELISTKI
Ga0326748_010133_1_1293300034656Filtered SeawaterQKTRLREHPPRVITEAQKAKAKEVMAIDYQNGWCKELISTKI
Ga0326748_044943_473_6193300034656Filtered SeawaterLGRKKIQKTRLREHEPRTITDAQKAKAKEVMAIDYQNGWCNELISSKI


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.