Metagenome / Metatranscriptome Family F093956

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093956
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	43 residues
Representative Sequence	FLSEKPERAQIYESFLAFVPGIAGAYGGAVGRGVVDNLFAGK
Number of Associated Samples	93
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	83.96 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.113 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (16.038 % of family members)
Environment Ontology (ENVO)	Unclassified (44.340 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.170 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.14% β-sheet: 0.00% Coil/Unstructured: 52.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF12706	Lactamase_B_2	20.75
PF00753	Lactamase_B	16.98
PF00069	Pkinase	5.66
PF08327	AHSA1	4.72
PF07676	PD40	4.72
PF00440	TetR_N	4.72
PF12840	HTH_20	3.77
PF14534	DUF4440	2.83
PF13181	TPR_8	1.89
PF02517	Rce1-like	1.89
PF00557	Peptidase_M24	1.89
PF03572	Peptidase_S41	0.94
PF02012	BNR	0.94
PF01212	Beta_elim_lyase	0.94
PF13304	AAA_21	0.94
PF09844	DUF2071	0.94
PF00132	Hexapep	0.94
PF00905	Transpeptidase	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	22.64
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	1.89
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	1.89
COG1167	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain	Transcription [K]	1.89
COG1003	Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain	Amino acid transport and metabolism [E]	0.94
COG4992	Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase	Amino acid transport and metabolism [E]	0.94
COG3033	Tryptophanase	Amino acid transport and metabolism [E]	0.94
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.94
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.94
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.94
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.94
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.94
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.94
COG0793	C-terminal processing protease CtpA/Prc, contains a PDZ domain	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.94
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.94
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.94
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.94
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.94
COG0112	Glycine/serine hydroxymethyltransferase	Amino acid transport and metabolism [E]	0.94
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.06 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.06 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.11 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.94 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	72.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.83 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.94 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	32.08 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	14.15 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.89 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.94 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.08 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	14.15 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.89 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.94 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.08 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11.32 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	2.83 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.89 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.94 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.08 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	5.66 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	2.83 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.89 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.94 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.94 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.08 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.77 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	2.83 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.89 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.94 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.94 %
Unclassified	root	N/A	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10129492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1003	Open in IMG/M
3300002245\|JGIcombinedJ26739_101409836	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300003219\|JGI26341J46601_10217790	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300005440\|Ga0070705_101757513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300005555\|Ga0066692_10042092	All Organisms → cellular organisms → Bacteria → Acidobacteria	2494	Open in IMG/M
3300005555\|Ga0066692_10210293	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1220	Open in IMG/M
3300005591\|Ga0070761_10111639	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1582	Open in IMG/M
3300005610\|Ga0070763_10682798	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300006052\|Ga0075029_100438953	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	854	Open in IMG/M
3300006162\|Ga0075030_100110073	All Organisms → cellular organisms → Bacteria	2243	Open in IMG/M
3300006162\|Ga0075030_100628735	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	851	Open in IMG/M
3300006354\|Ga0075021_10365902	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	900	Open in IMG/M
3300006893\|Ga0073928_10152978	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1858	Open in IMG/M
3300009088\|Ga0099830_10549508	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300009520\|Ga0116214_1338025	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300009523\|Ga0116221_1017601	All Organisms → cellular organisms → Bacteria	3849	Open in IMG/M
3300009523\|Ga0116221_1184192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	906	Open in IMG/M
3300009549\|Ga0116137_1154714	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300009635\|Ga0116117_1093279	All Organisms → cellular organisms → Bacteria → Acidobacteria	751	Open in IMG/M
3300009641\|Ga0116120_1023268	All Organisms → cellular organisms → Bacteria → Acidobacteria	2246	Open in IMG/M
3300009641\|Ga0116120_1173346	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	689	Open in IMG/M
3300009645\|Ga0116106_1017030	All Organisms → cellular organisms → Bacteria	2579	Open in IMG/M
3300009665\|Ga0116135_1132919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	920	Open in IMG/M
3300009683\|Ga0116224_10098604	All Organisms → cellular organisms → Bacteria → Acidobacteria	1417	Open in IMG/M
3300009700\|Ga0116217_10428078	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300009824\|Ga0116219_10629785	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300009839\|Ga0116223_10077086	All Organisms → cellular organisms → Bacteria → Acidobacteria	2133	Open in IMG/M
3300010339\|Ga0074046_10024088	All Organisms → cellular organisms → Bacteria	4222	Open in IMG/M
3300010359\|Ga0126376_10848395	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	897	Open in IMG/M
3300010379\|Ga0136449_100719987	All Organisms → cellular organisms → Bacteria	1669	Open in IMG/M
3300010379\|Ga0136449_102068741	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300011270\|Ga0137391_11000422	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	680	Open in IMG/M
3300012205\|Ga0137362_11747521	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	509	Open in IMG/M
3300012363\|Ga0137390_10894040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	843	Open in IMG/M
3300012582\|Ga0137358_10622972	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	723	Open in IMG/M
3300012917\|Ga0137395_10393494	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300012923\|Ga0137359_10739220	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300014200\|Ga0181526_10827417	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300014493\|Ga0182016_10107013	All Organisms → cellular organisms → Bacteria → Acidobacteria	1966	Open in IMG/M
3300014638\|Ga0181536_10059766	All Organisms → cellular organisms → Bacteria	2418	Open in IMG/M
3300016750\|Ga0181505_10472282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300017938\|Ga0187854_10132718	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1142	Open in IMG/M
3300017938\|Ga0187854_10383240	All Organisms → cellular organisms → Bacteria → Acidobacteria	591	Open in IMG/M
3300017941\|Ga0187850_10394479	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300017966\|Ga0187776_10960748	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300018003\|Ga0187876_1162194	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	773	Open in IMG/M
3300018017\|Ga0187872_10358573	All Organisms → cellular organisms → Bacteria → Acidobacteria	625	Open in IMG/M
3300018021\|Ga0187882_1035965	All Organisms → cellular organisms → Bacteria	2490	Open in IMG/M
3300018023\|Ga0187889_10104221	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1398	Open in IMG/M
3300018033\|Ga0187867_10477588	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300018033\|Ga0187867_10805921	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300018034\|Ga0187863_10519968	All Organisms → cellular organisms → Bacteria → Acidobacteria	667	Open in IMG/M
3300018037\|Ga0187883_10067502	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1881	Open in IMG/M
3300018038\|Ga0187855_10029304	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3533	Open in IMG/M
3300018040\|Ga0187862_10825121	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300018043\|Ga0187887_10257007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1034	Open in IMG/M
3300018047\|Ga0187859_10664823	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300018057\|Ga0187858_10109886	All Organisms → cellular organisms → Bacteria	1874	Open in IMG/M
3300018086\|Ga0187769_10514433	All Organisms → cellular organisms → Bacteria → Acidobacteria	903	Open in IMG/M
3300018086\|Ga0187769_10737577	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300018088\|Ga0187771_11329760	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300018090\|Ga0187770_11496721	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300019787\|Ga0182031_1231639	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300021168\|Ga0210406_10028635	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5064	Open in IMG/M
3300021170\|Ga0210400_11404572	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300021171\|Ga0210405_10447956	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300021432\|Ga0210384_10210961	All Organisms → cellular organisms → Bacteria → Acidobacteria	1747	Open in IMG/M
3300022524\|Ga0224534_1009858	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3031	Open in IMG/M
3300022533\|Ga0242662_10010906	All Organisms → cellular organisms → Bacteria	1846	Open in IMG/M
3300023250\|Ga0224544_1032655	All Organisms → cellular organisms → Bacteria → Acidobacteria	733	Open in IMG/M
3300026294\|Ga0209839_10112529	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	922	Open in IMG/M
3300026294\|Ga0209839_10216750	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300027497\|Ga0208199_1045216	All Organisms → cellular organisms → Bacteria → Acidobacteria	946	Open in IMG/M
3300027583\|Ga0209527_1065186	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300027619\|Ga0209330_1128836	All Organisms → cellular organisms → Bacteria → Proteobacteria	573	Open in IMG/M
3300027648\|Ga0209420_1136333	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
3300027767\|Ga0209655_10244251	All Organisms → cellular organisms → Bacteria → Acidobacteria	586	Open in IMG/M
3300027829\|Ga0209773_10317681	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300027857\|Ga0209166_10587805	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300027911\|Ga0209698_10318848	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1227	Open in IMG/M
3300028566\|Ga0302147_10001021	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	12827	Open in IMG/M
3300028780\|Ga0302225_10304515	All Organisms → cellular organisms → Bacteria → Acidobacteria	755	Open in IMG/M
3300029903\|Ga0247271_105726	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2188	Open in IMG/M
3300029952\|Ga0311346_10020914	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10455	Open in IMG/M
3300029990\|Ga0311336_10635959	Not Available	912	Open in IMG/M
3300030054\|Ga0302182_10234242	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	781	Open in IMG/M
3300030294\|Ga0311349_10031450	All Organisms → cellular organisms → Bacteria	4807	Open in IMG/M
3300030659\|Ga0316363_10069124	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1627	Open in IMG/M
3300030687\|Ga0302309_10590729	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
3300030991\|Ga0073994_10036775	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300030991\|Ga0073994_12190241	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300031525\|Ga0302326_10696244	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1487	Open in IMG/M
3300031525\|Ga0302326_12318181	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300031718\|Ga0307474_10937543	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	685	Open in IMG/M
3300031902\|Ga0302322_100741754	All Organisms → cellular organisms → Archaea → TACK group	1167	Open in IMG/M
3300031954\|Ga0306926_11695075	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	721	Open in IMG/M
3300032180\|Ga0307471_101426143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	852	Open in IMG/M
3300032261\|Ga0306920_101693863	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	896	Open in IMG/M
3300032261\|Ga0306920_103082419	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300032782\|Ga0335082_10959217	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	719	Open in IMG/M
3300032892\|Ga0335081_10113703	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3982	Open in IMG/M
3300032892\|Ga0335081_11628196	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300033433\|Ga0326726_11013019	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	807	Open in IMG/M
3300033982\|Ga0371487_0135073	All Organisms → cellular organisms → Bacteria → Acidobacteria	1248	Open in IMG/M
3300034125\|Ga0370484_0167553	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300034282\|Ga0370492_0254015	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.92%
Aquatic	Environmental → Aquatic	32.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.72%
Freshwater	Environmental → Aquatic → Freshwater	26.42%
Peat	Environmental → Terrestrial → Peat	13.21%
Sediment	Environmental → Aquatic → Sediment	4.72%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	26.42%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.15%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	13.21%
Loam	Environmental → Terrestrial → Soil → Loam	6.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.72%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.94%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	20.75%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	13.21%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.32%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.38%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.72%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.89%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.94%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	16.04%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	11.32%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.60%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	5.66%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.72%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.72%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.77%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.83%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.89%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.89%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.89%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.89%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.94%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009549	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018021	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300022524	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023250	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028566	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300029903	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029990	I_Fen_N2 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030687	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033982	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_101294922	3300000567	Peatlands Soil	VPVVEWLAYFLLSQKPDRAQVYESFLAFVPGIAGAYGGAMGRSVVDNLFTGK*
JGIcombinedJ26739_1014098362	3300002245	Forest Soil	YFLAQKPDRAQIYESFLAFVPGIAGAFGGSVGRTVIDNLFAKK*
JGI26341J46601_102177901	3300003219	Bog Forest Soil	LSEKPERAQIYESFLAFVPGIAGAYGGAVGRGVVENLFPKK*
Ga0070705_1017575131	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	AQKPERAQIYESFLAFLPGIVGAYSGAFGRGVVNNLLANK*
Ga0066692_100420921	3300005555	Soil	LAYFVLSQKPERAQIYESFLAFLPGIAGAFGGALGRGLVDNLFAGK*
Ga0066692_102102931	3300005555	Soil	ERAQIYESFLAFLPGTVGAYSGAFGRGVVNNLLANK*
Ga0070761_101116391	3300005591	Soil	RAQIYESFLAFVPGIAGAYGASIGRNVVDNLFAKK*
Ga0070763_106827982	3300005610	Soil	PIVDGLAYVFLSQKPERAQVYESFLAFLPGIAGAVGGAVGRGVVDNLFVKK*
Ga0075029_1004389531	3300006052	Watersheds	PERAQIYESFLAFMPGIAGAFGGAMARGVVDNLFKKK*
Ga0075030_1001100734	3300006162	Watersheds	SQKPERAQIYESFLAFIPGIAGAFGGSIGRGVVDNLFAGK*
Ga0075030_1006287351	3300006162	Watersheds	KPERAQIYESFLAFVPGIAGAYGGAVGRGVVDNLFVKK*
Ga0075021_103659022	3300006354	Watersheds	LSQKPMPAQIYESFLAFLPGIAGAYGGAMGRGVVNNLFPNK*
Ga0073928_101529781	3300006893	Iron-Sulfur Acid Spring	PERAQIYESFLAFVPGIAGAFGGAMGRVLIDNLFARK*
Ga0099830_105495082	3300009088	Vadose Zone Soil	AYFFLSQKPERAQIYESFLAFLPGIAGAFGGAMGRGLVDNLFAGK*
Ga0116214_13380252	3300009520	Peatlands Soil	FLSEKPERAQIYESFLAFVPGIAGAYGGAVGRGVVDNLFAGK*
Ga0116221_10176011	3300009523	Peatlands Soil	QKPERAQIYESFLAFLPGIAGAYGGAAGRDVVDKLFAGK*
Ga0116221_11841922	3300009523	Peatlands Soil	LAYFFLSQKPGRAQIYESFLAFMPGIAGAFGGSIGRGVVDKLLTGK*
Ga0116137_11547141	3300009549	Peatland	RAQIYESFLAFVPGIAGAFGGSVGRGVVDNLFGKK*
Ga0116117_10932792	3300009635	Peatland	PVVEWLAYWFLTQKPERAQIYESFLAFLPGIAGAFGGSISRGVVDNLFGKK*
Ga0116120_10232681	3300009641	Peatland	KPERAQIYESFLAFVPGIAGAFGGAMGRGVVDNLFARK*
Ga0116120_11733462	3300009641	Peatland	VMEWLAYFFLSEKPPRAQIYESFLAFMPGIAGAYGGAAGRGVVDNLFAGK*
Ga0116106_10170301	3300009645	Peatland	RAQIYESFLAFVPGIAGAYGGSIGRGVVDNLFAGK*
Ga0116135_11329191	3300009665	Peatland	TRAQVYESFLGFVPGIAGAYGGAIGRGVVDNLSANK*
Ga0116224_100986042	3300009683	Peatlands Soil	YFFLSQKPGRAQIYESFLAFMPGIAGAFGGSIGRGVVDKLLTGK*
Ga0116217_104280782	3300009700	Peatlands Soil	AYFLLSQKPDRAQVYESFLAFVPGIAGAYGGAMGRSVVDNLFTGK*
Ga0116219_106297852	3300009824	Peatlands Soil	VPLVDWLAYFFLSQKPGRAQIYESFLAIMPGIAGAFGGSIGRGVVDKLLTGK*
Ga0116223_100770861	3300009839	Peatlands Soil	PTRAQIYESFLAFVPGIAGAFGGSVARGVIDNLFGKK*
Ga0074046_100240886	3300010339	Bog Forest Soil	AQIYESFLAFLPGIAGAFGGAIGRGVVDNLFAGK*
Ga0126376_108483952	3300010359	Tropical Forest Soil	RFLHQHLDRAQIYESYLAFMPGIAGAFGGSLGRGVVNNLFPTK*
Ga0136449_1007199873	3300010379	Peatlands Soil	RAQIYESFLAFVPGIAGAYGGAVGRGVVDNLFAGK*
Ga0136449_1020687412	3300010379	Peatlands Soil	PVVEWLAYFFLSEKPPRAQIYESFLAFMPGIAGAYGGAVGRGVVDNLFAGK*
Ga0137391_110004222	3300011270	Vadose Zone Soil	VPVVEWLAYFFLSQKPARAQIYESFLAFLPGIAGAFGGAMGRGLVDNLFAGK*
Ga0137362_117475211	3300012205	Vadose Zone Soil	VFVPVVEWLAYFFLSQKPERAQIYESFLAFLPGIAGAFGGALGRGLVDNLFAGK*
Ga0137390_108940401	3300012363	Vadose Zone Soil	LVEWLAYFLLKQKPERAQIYESFLAFLPGIAGAYGGALGRGVVENLFPGK*
Ga0137358_106229721	3300012582	Vadose Zone Soil	KPQRAQIYESFLAFVPGIAGAFGGAMGRGLVDNLFAKK*
Ga0137395_103934942	3300012917	Vadose Zone Soil	WLAYFFLSQTPERAQIYESFLAFLPGIAGAFGGALGRGLVDNLFAGK*
Ga0137359_107392202	3300012923	Vadose Zone Soil	FLSQKPERAQIYESFLAFLPGIAGAFGGALGRSLVDNLLTGK*
Ga0181526_108274171	3300014200	Bog	FFLTEKPTRAQVYESFLGFVPGIAGAYGGAIARGVVDNLFPKK*
Ga0182016_101070132	3300014493	Bog	EWLAYWFLTEKPERAQIYESFLAFLPGIAGAYGGAVARNVVDNLFARK*
Ga0181536_100597664	3300014638	Bog	AYFFLSEKPERAQIYESFLAFVPGIAGAFGGSIGRGVVDNLFAGK*
Ga0181505_104722822	3300016750	Peatland	VGWLAYFFLSQKPQRAQIYESFLAFMPGIAGAFGGSIGRGVVNNLFAGK
Ga0187854_101327181	3300017938	Peatland	RAQIYGSLRAFVTGMGGAFGGAMGRSVVDNLFARK
Ga0187854_103832401	3300017938	Peatland	KPERAQIYESFLAFLPGIAGAFGGSISRGVVDNLFGKK
Ga0187850_103944791	3300017941	Peatland	PERAQIYESFLAFVPGIAGAYGAAVGRGVVDNLFAKK
Ga0187776_109607482	3300017966	Tropical Peatland	VEWLAYLLLSQKPQPAQIYESFLAFLPGIAGAYGGAFGRGVVDNLFPGKG
Ga0187876_11621942	3300018003	Peatland	PDRAQIYESFLAFVPGIAGAFGGAMGRGVVDNLFARK
Ga0187872_103585732	3300018017	Peatland	WLAYFFLSEKPPRAQIYESFLAFMPGIAGAYGGAAGRGVVDNLFAGK
Ga0187882_10359654	3300018021	Peatland	YFLSEKPERAQIYESFLAFVPGIAGAYGAAVGRGVVDNLFAKK
Ga0187889_101042213	3300018023	Peatland	AYFFLSEKPPRAQIYESFLAFMPGIAGAYGGAAGRGVVDNLFAGK
Ga0187867_104775881	3300018033	Peatland	RAQIYESFLAFVPGIAGAYGGSIGRGVVDNLFAGK
Ga0187867_108059212	3300018033	Peatland	WLAYYFLSEKPTRAQIYESFLAFVPGIAGAFGGSVARGVVDNLFGKK
Ga0187863_105199682	3300018034	Peatland	TRAQIYESFLAFVPGIAGAFGGSVARGVVDNLFGKK
Ga0187883_100675021	3300018037	Peatland	FLSQKPDRAQIYESFLAFVPGIAGAFGGSVGRGVVDNLFAGK
Ga0187855_100293045	3300018038	Peatland	FLSEKPTRAQIYESFLAFVPGIAGAFGGSVARGVVDNLFGKK
Ga0187862_108251212	3300018040	Peatland	VEWLAYYFLSEKPTRAQIYESFLAFVPGIAGAFGGSIGRGVVDNLFAGK
Ga0187887_102570073	3300018043	Peatland	LAYFFLTEKPTRAQVYESFLGFVPGIAGAYGGAIGRGVVDNLSANK
Ga0187859_106648231	3300018047	Peatland	EWLAFFYLSEKPSRAQIYESFLAFMPGVAGAYGGSIGRGVVDNLFAGK
Ga0187858_101098864	3300018057	Peatland	VEWLAYWFLTQKPERAQIYESFLAFLPGIAGAFGGSISRGVVDNLFGKK
Ga0187769_105144333	3300018086	Tropical Peatland	VPVVEWLAYYFLSEKPTRAQVYESFLAFVPGIAGAFGGSVARGVVDNLYGKK
Ga0187769_107375773	3300018086	Tropical Peatland	YRAQVYESFLAFLPGIAGAVGGAVGRGVVDNLFPKK
Ga0187771_113297602	3300018088	Tropical Peatland	EWLAYFFLSQKPDRAQVYESFLAFLPGIAGAVGGAVGRGVVENLFRKK
Ga0187770_114967211	3300018090	Tropical Peatland	RVQVYESFLAFLPGIAGAVGGAVGRGVVDNLFPKK
Ga0182031_12316392	3300019787	Bog	WLAYWFLTQKPERAQIYESFLAFLPGIAGAFGGSISRGVVDNLFGKK
Ga0210406_100286358	3300021168	Soil	FVPVVEWLAYFYLSQKPQRAQIYESFLAFLPGIAGAFGGALGRGLVDNLFAGE
Ga0210400_114045721	3300021170	Soil	QKPGRAQIYESFLAFLPGIAGAFGGAMGRGLVDNLFAGK
Ga0210405_104479561	3300021171	Soil	YFFLSQKPGRAQIYESFLAFLPGIAGAFGGAMGRGLVDNLFSGK
Ga0210384_102109612	3300021432	Soil	FLTQKPERAQVYESFLAFLPGIAGAFGGSVGRGVVDNLFAKK
Ga0224534_10098585	3300022524	Soil	LAYFFLSEKPERAQIYESFLAFVPGIAGAFGGSIGRGVVDNLFAGK
Ga0242662_100109061	3300022533	Soil	PVVEWLAYFFLSQKPERAQIYESFLAFLPGIAGAFGGAIGRGLVDNLFAGK
Ga0224544_10326551	3300023250	Soil	SEKPGRAQIYESFLAFVPGIAGAYGAAVGRNVFDNLFAKK
Ga0209839_101125291	3300026294	Soil	PLVEWLAFAFLTQKPERAQIYESFLAFLPGIAGAYGGAMGRGVVDNLFAKK
Ga0209839_102167501	3300026294	Soil	EWLAYYFLSEKPARAQIYESFLAFVPGIAGAYGGAVGRGVVDNLFPKK
Ga0208199_10452162	3300027497	Peatlands Soil	SEKPERAQIYESFLAFVPGIAGAYGGAVGRGVVDNLFAGK
Ga0209527_10651861	3300027583	Forest Soil	LTEKPYRAQIYESFLAFLPGIAGAFGGAMGRGLVDNLFAGK
Ga0209330_11288363	3300027619	Forest Soil	PTRAQIYESFLAFLPGIAGAVGGALARTVLNNLFAKN
Ga0209420_11363331	3300027648	Forest Soil	DWMAYYFFSQKPGRAQIYESLLAFVPGIAGAYGGSAGRNVLNNLYVNK
Ga0209655_102442512	3300027767	Bog Forest Soil	EKPERAQIYESFLAFVPGIAGAYGAAVGRGVVDNLFGKK
Ga0209773_103176812	3300027829	Bog Forest Soil	ERAQIYESFLTFVPGIAGAFGGAMGRNLVDNLLEKK
Ga0209166_105878052	3300027857	Surface Soil	GVFVPLVEWLAYFFLTQKPQRAQIYESFLAFFPGIAGGAIGRGVVDNLFAKK
Ga0209698_103188483	3300027911	Watersheds	DRAQIYESLLAFLPGIAGAYGAAVGRGVVDNLFVKK
Ga0302147_100010211	3300028566	Bog	PVVEWLAYWFLTQKPERAQIYESFLAFLPGIAGAFGGSISRGVVDNLFGKK
Ga0302225_103045152	3300028780	Palsa	VEWLAYYFLAEKPTRAQIYESFLAFVPGIAGAYGAAVGRGVLDHLFAKK
Ga0247271_1057264	3300029903	Soil	TRAQVYESFVAFLPGIAGAYGGAIGRGAVENLFGKK
Ga0311346_100209148	3300029952	Bog	EKPERAQIYESFLAFLPGIAGAYGGAVARNVVDNLFARK
Ga0311336_106359591	3300029990	Fen	WFAYAVLSQKPDRAQIYESFLAFLPGIVGAYGGAFGRSVVKNLFPPKQGVS
Ga0302182_102342421	3300030054	Palsa	AYVFLSQKPERAQVYESFLAFLPGIAGAVGGAVGRGVVDNLFVKK
Ga0311349_100314501	3300030294	Fen	YVFLTQKPDRAQVSESVLAFLPGFAGAFGGAMGRGVVDNLFAKK
Ga0316363_100691243	3300030659	Peatlands Soil	RAQIYESFLAFLPGIAGAYGGAAGRDVVDKLFAGK
Ga0302309_105907291	3300030687	Palsa	LAEKPTRAQIYESFLAFVPGIAGAYGAAVGRGVLDHLFAKK
Ga0073994_100367751	3300030991	Soil	FFLSQKPERAQIYESFLAFLPGIAGAFGGALGRGLVDNLFAGK
Ga0073994_121902411	3300030991	Soil	LCRWWSGWLIFFLSQKPERAQIYESFLAFVPGIAGAVGGSVGRGVFDNLFAAK
Ga0302326_106962441	3300031525	Palsa	EWLAFFYLSEKPSRAQIYESFLAFMPGIAGAYGGAIGRGVVDNLFAKK
Ga0302326_123181812	3300031525	Palsa	WLAYFFLSEKPGRAQIYESFLAFVPGIAGAYGAAVGRNMFDNLFAKK
Ga0307474_109375431	3300031718	Hardwood Forest Soil	QKPERAQIYESFLAFVPGIAGAFGGAMGRVLVDNLFAKK
Ga0302322_1007417541	3300031902	Fen	VFLTQKPDRAQVSESVLAFLPGFAGAFGGAMGRGVVDNLFAKK
Ga0306926_116950752	3300031954	Soil	TVKSYEFQIYSSFLVILPGLVGAYGGAFGRGVVDHLFAGK
Ga0307471_1014261432	3300032180	Hardwood Forest Soil	LKPERAQIYESFLAFLPGIAGAYGGAFGRGVVDNLLANK
Ga0306920_1016938631	3300032261	Soil	YFLLSQKPERAQIYESFLAFLPGIAGAYGGSIGRGVVDNLFAGN
Ga0306920_1030824191	3300032261	Soil	IPVIEWLAYYFLSQKPERAQIYESFLAFMPGIAGAYGGALGRGVVNNLFPEK
Ga0335082_109592171	3300032782	Soil	DRAQIYGSFLAFLPGIAGAYGGALGRGVVNNLFAKG
Ga0335081_101137031	3300032892	Soil	PSRAQMYASCLIFLPGIAGAYGGAVFRNVVNNLLQGK
Ga0335081_116281961	3300032892	Soil	FLLTQKPTTAQVYESFLAFLPGIAGAYGGALARTVVNNLFAKN
Ga0326726_110130192	3300033433	Peat Soil	YFLSQKPERAQIYESFLAFMPGLAGAFGGAMGRGVVDNLFKK
Ga0371487_0135073_1127_1246	3300033982	Peat Soil	EKPERAQVYESFLAFVPGIAGAFGGSVARGVVDNLFAGK
Ga0370484_0167553_475_594	3300034125	Untreated Peat Soil	QKPERAQIYESFLAFVPGIAGAFGGAIGRGVVDNLFAGK
Ga0370492_0254015_2_142	3300034282	Untreated Peat Soil	LAYFFLTQKPERAQVYESFLAFLPGIAGAYGGAMGRGVVDNLFPKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093956

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences