NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F093927

Metagenome / Metatranscriptome Family F093927

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093927
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 72 residues
Representative Sequence MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGA
Number of Associated Samples 94
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction Yes
3D model pTM-score0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil
(13.207 % of family members)
Environment Ontology (ENVO) Unclassified
(49.057 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(59.434 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 58.76%    β-sheet: 0.00%    Coil/Unstructured: 41.24%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF03551PadR 86.79
PF07519Tannase 6.60
PF12867DinB_2 3.77
PF13180PDZ_2 0.94
PF13637Ank_4 0.94
PF02623FliW 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 86.79
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 86.79
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 86.79
COG1699Flagellar assembly factor FliWCell motility [N] 0.94


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil13.21%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil9.43%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere6.60%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere5.66%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere4.72%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.72%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere4.72%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.83%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.83%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.83%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.83%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere2.83%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.89%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.89%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.89%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.89%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.89%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.89%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.89%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.89%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.89%
Sediment SlurryEngineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry1.89%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.94%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.94%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.94%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.94%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.94%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.94%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.94%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.94%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.94%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.94%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.94%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.94%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.94%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.94%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.94%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005169Soil and rhizosphere microbial communities from Laval, Canada - mgHPAEnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009609Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011443Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2EnvironmentalOpen in IMG/M
3300012509Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6EnvironmentalOpen in IMG/M
3300012511Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10EnvironmentalOpen in IMG/M
3300012895Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2EnvironmentalOpen in IMG/M
3300012906Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300020065Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023057Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6EnvironmentalOpen in IMG/M
3300023263Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6EnvironmentalOpen in IMG/M
3300025290Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5Host-AssociatedOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027360Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes)Host-AssociatedOpen in IMG/M
3300028608Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6EnvironmentalOpen in IMG/M
3300028812Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48EnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031892Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2EnvironmentalOpen in IMG/M
3300031940Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300032000Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3EnvironmentalOpen in IMG/M
3300032012Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3EnvironmentalOpen in IMG/M
3300032157Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soilEnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300034075Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A4A4.2EngineeredOpen in IMG/M
3300034659Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034661Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034675Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034692Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A0.3EngineeredOpen in IMG/M
3300034817Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062592_10163011813300004480SoilMSPSTLALSQRILARLMPPAQAEALVGDLLEECRLRLQAGSHVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVASYVAAVGIQFV
Ga0066810_1004244513300005169SoilMSLSTLAASQWILARLMPPAQAEALIGDLLQERRLRLQAGSHVSVAGWYWRQLASSVPVLLWASMRRGA
Ga0065705_1024638133300005294Switchgrass RhizosphereMSPSTLVRVQWILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLPVLLWASLYRRSSLLTL
Ga0070690_10015520743300005330Switchgrass RhizosphereMSLSTLAASQWILARLMPPAQAEALIGDLLEERRLRLQAGSHVSVAGWYWRQLASSVP
Ga0070670_10035124413300005331Switchgrass RhizosphereMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPALLWASVRRGAWLI
Ga0070670_10040517313300005331Switchgrass RhizosphereMSPLTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQASVAGWCWRQLASSVPALLWASVRRG
Ga0066388_10748584313300005332Tropical Forest SoilMRPSTIALSQRILARLMPPAHAEALLGDLLEERRLRLRAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVASYIAA
Ga0068868_10074191613300005338Miscanthus RhizosphereMSLSTLAASQWILARLMPPAQAEALIGDLLEERRLRLQAGSHVSVAGWYWRQLASSVPALLWASVRR
Ga0070689_10057233633300005340Switchgrass RhizosphereMSPSTLALSQRILARLMPPAQAEALVGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLIT
Ga0070689_10142175113300005340Switchgrass RhizosphereMSPSTLLRAQWLLTWLMPSAYAEALLGDLLEERRLRLDAGSPAGVARWYWIQLASSLPVLIWASM
Ga0070661_10139633423300005344Corn RhizosphereMSPSTLVRVQWILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLAS
Ga0070669_10022787133300005353Switchgrass RhizosphereLRAQWLLTWLMPSAYAEALLGDLLEERRLRLDAGSPAGVARWYWIQLASSLPVLIWASMYRRSSFLTLVIAVAS*
Ga0070669_10112548623300005353Switchgrass RhizosphereMSPLTLALSQRILARLMPPAQAEALLGDLLEECRLRLRVESPASATRWYWMQLVSSM
Ga0070675_10217280823300005354Miscanthus RhizosphereMSPSTLALSQRILERLMTPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSV
Ga0070673_10022184343300005364Switchgrass RhizosphereMSLSTLAASQWILARLMPPAQAEALIGDLLEERRLRLQAGSHVSVAGWYWRQLASSVPVL
Ga0070700_10007126913300005441Corn, Switchgrass And Miscanthus RhizosphereMSPSTLALSQRILARLMPPAQAEALVGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVR
Ga0070708_10183415713300005445Corn, Switchgrass And Miscanthus RhizosphereMSPSTIALSQQILARLMPPARAEALLGDLLEECRLRLQAGSHVSVAGWYSRQLASSVSILLWASMRRGAWLVTVVTAVASYIAA
Ga0070672_10058468813300005543Miscanthus RhizosphereMSLSTLVVSQWIFARLMPPARAEALLGDLLEERRLRLQAGSQASVAGWYWRQLASSVSALLWASVRRGAWLVTVVTAVASFIAAIGIQMLL
Ga0070672_10215473713300005543Miscanthus RhizosphereMSPSTLALSQRILARLMPPAQAEALVGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVASYV
Ga0068852_10275271313300005616Corn RhizosphereMSLSTLVVSQWIFARLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPALLWASVR
Ga0068859_10234082713300005617Switchgrass RhizosphereMSPSTLLRAQWLLTWLMPSAYAEALLGDLLEERRLRLDAGSPAGVARWYWIQLASS
Ga0066905_10228946113300005713Tropical Forest SoilMSPSTLALSQRILARLMPPAHAEALLGDLLEERRLRLQAGSHVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVA
Ga0068861_10026630013300005719Switchgrass RhizosphereMSLSTLVVSQWIFARLMPPARAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPAL
Ga0068858_10013635253300005842Switchgrass RhizosphereMSLSTLALSQWIFARLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPALLWASVRRG
Ga0068858_10147107423300005842Switchgrass RhizosphereMSPSTIALSQWILARLMPPADAEALLGDLLEELRLQAGSHVSVAGWYWRQLASSV
Ga0075432_1019611733300006058Populus RhizosphereMSPSTIAISQRILARLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVSVLLWASM
Ga0068871_10127130923300006358Miscanthus RhizosphereMSPLTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQASVAGWCWRQLASSVPALLWASVRRGAWLIT
Ga0075431_10093881113300006847Populus RhizosphereVTPSTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSV
Ga0075433_1010898353300006852Populus RhizosphereMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVSALLWASVRRGAWLITVVTAVASY
Ga0079218_1006504813300007004Agricultural SoilMSGSTLALSQRILALLMPPAQAEALLGDLLEERRLRLQAGSHVSVAGWYWMQLASSLPVLLWASVRRGAWLITVVTAVAS
Ga0105240_1177330623300009093Corn RhizosphereMSLSTLVVSQWIFARLMPPARAEALLGDLLEERRLRLQAGSHVNVAGWYWRQLASSVPVLLWASMRRGVWL
Ga0075418_1115877423300009100Populus RhizosphereVEARVTPSTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQFASSVPTLLWASVRRGAWLITVVTAVASYIAA
Ga0105247_1030435113300009101Switchgrass RhizosphereMSLSTLVVSQWIFARLMPPARAEALLGDLLEERRLRLQAGSHVSVAGWYWRQLASSVPVLLWASMRRGAWLVSVVTAVAS
Ga0114129_1307095413300009147Populus RhizosphereMSPSTLVRVQWILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLPVLLWASLYRRSSLLTLVIAV
Ga0105249_1050204633300009553Switchgrass RhizosphereMSLSTLALSQWIFARLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPVLLWA
Ga0105249_1134501933300009553Switchgrass RhizosphereMSPSTLVRVQWILACLMPSARAEALLGDLLEERRLRLHVGSPARVARWYWMQLASSLPVLLWASLHCRSSFLT
Ga0105249_1280330723300009553Switchgrass RhizosphereMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQFASSVPTLLWASVRRGAWLITVV
Ga0105347_131722613300009609SoilMSPSTLALSERILARLMPPAQAEALVGDLLEECRLRLQAGSHVSVAGWYSRQLASSVSV
Ga0126382_1041786233300010047Tropical Forest SoilMSPSTLVRVQWILASLMPSDRAEALLGDLLEERRLRLHAGSQASVARWYWMQLAWSLPFLLRASLQRRSSFLTLGI
Ga0134127_1155021523300010399Terrestrial SoilMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQFASSVPTLLWASVRRGAWLITVVTAVA
Ga0134127_1174904123300010399Terrestrial SoilMSPSTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVA
Ga0134123_1255528913300010403Terrestrial SoilMSPSTLVRVQWILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLPVLLWASLYRRS
Ga0105246_1067374213300011119Miscanthus RhizosphereMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWIQLASSLPVLIWASMYRRSSFLTLVIAVASYLAVGGVAFVLRTAL
Ga0137457_115458813300011443SoilMSPLTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQASVAGWCWRQLASSVPALLWASVRRGAWLITVVTAVASCIAAFCIQF
Ga0157334_102238723300012509SoilMSLSTLALSQWIFARLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVSALLWASVRRGAWL
Ga0157332_104248223300012511SoilMSPSTLVRVQCILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLPVLLWASLYRRSSLLTLVIAVASYLAAG
Ga0157309_1025905613300012895SoilMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVASY
Ga0157295_1036093113300012906SoilMSPLTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVASYVAAVGIQFVLWSAL
Ga0137410_1062801713300012944Vadose Zone SoilMSLSTLAVSQWTLARLMPPAQAEALIGDLLEERRLRLQAGSHVRVAGWYWRQLASSVPALLCASVRRGAWLITV
Ga0164300_1046285513300012951SoilMSPSMIVLSQRILARLMPPAHAEALLGDLLEECRLRLRAESPASATRWYWMQLASS
Ga0157371_1089138923300013102Corn RhizosphereMSPSTLVRVQWILTLLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLPVLLWASLYRRSSLLTL
Ga0157378_1007472113300013297Miscanthus RhizosphereMSPSTIALSQQILARLMPPARAEALLGDLLEECRLRLQAGSHVSVAGWYWRQLASSV
Ga0163162_1205401613300013306Switchgrass RhizosphereMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPALLWASVRRGA
Ga0157375_1284357913300013308Miscanthus RhizosphereMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSV
Ga0163163_1082646613300014325Switchgrass RhizosphereMSLSTLAASQWILARLMPPAQAEALIGDLLEERRLRLQAGSHVSVTGWYWRQLASSVPVLLWASM
Ga0157379_1201527413300014968Switchgrass RhizosphereMSLSTLALSQWILARLMPPAHAEALLGDLLEERRLRLHAGPHVSVAGWYWRQLASSVPALLWASVRR
Ga0157376_1019187533300014969Miscanthus RhizosphereMSPSTIALSQRILAQLMPPAHAEALLGDLLEERRLRLQAGSHVSVAGWYWRQLASSVSALLWASVRRGAWLITVVTAVASYIAAAGIQFVL
Ga0132257_10312185923300015373Arabidopsis RhizosphereMSPSTIALWQRILARLMPPAQAEALLGDLLEERRLRLQAGSHVSVAGWYWRQLASS
Ga0132255_10567138313300015374Arabidopsis RhizosphereMSPSTIALSQRVFARLMPPAHAEALLGDLLEERRLRLQAGSHVSVAGWYWRQLASSVPALLWASMRRGAWLVSVVTAVASFIAAVG
Ga0163161_1033897623300017792Switchgrass RhizosphereMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVASFIAAIGIQMLL
Ga0190274_1107850133300018476SoilMSPLTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQFASSVPALLWASVRRGAWLITVV
Ga0180113_123849023300020065Groundwater SedimentMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPALLW
Ga0247797_106924523300023057SoilMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPTLLWA
Ga0247800_107976113300023263SoilMSPSTLALSQRILALLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRR
Ga0207673_106149513300025290Corn, Switchgrass And Miscanthus RhizosphereMSLSTLALSQWIFARLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPALLWASVRRGAWL
Ga0207662_1002307313300025918Switchgrass RhizosphereMSPSTLVRVQWILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLPVLLWAS
Ga0207681_1114557123300025923Switchgrass RhizosphereMSPSTLVRVQWILACLMPSARAEALLGDLLEERRLRLHVGSPARVARWYWMQLASSLPVLLWASLHRRSSFLTLVIA
Ga0207701_1014376513300025930Corn, Switchgrass And Miscanthus RhizosphereMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGA
Ga0207690_1131857423300025932Corn RhizosphereMSPSTLVRVQWILACLMPSARAEALLGDLLEERRLRLHVGSPARVARWYWMQLAS
Ga0207709_1031812733300025935Miscanthus RhizosphereMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAV
Ga0207670_1058345413300025936Switchgrass RhizosphereMSPSTIALSQRILAWLMPPAHAEALLGDLLEERRLRLQAGSQVSVGGWYWRQLASS
Ga0207704_1110556813300025938Miscanthus RhizosphereMSPSTLVRVQWVLEWFMPSGRAEALLGDLLEERRLRLHVGSPASVARWYWKQLASSLPVLLWASLHRRSS
Ga0207711_1213500823300025941Switchgrass RhizosphereMSPSTIALSQRILAQLMPPAHAEALLGDLLEERRLRLQAGSHVSVAGWYWRQLASS
Ga0207661_1063934613300025944Corn RhizosphereMIPSTLALSQRIFERLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPALLWASIRRGAWLVTVVTAVASFIAAIG
Ga0207651_1075118233300025960Switchgrass RhizosphereMSLSTLAASQWILARLMPPAQAEALIGDLLEERRLRLQAGSHVSVAGWYWRQLASSVPVLLWASMRRGAWLVSVVTAVASFIAA
Ga0207703_1176181823300026035Switchgrass RhizosphereMSLSTLVVSQWIFARLMPPARAEALLGDLLEERRLRLQAGSQASVAGWYWRQLASSVSALLWASVRRGAWLVTVVTAVGS
Ga0207648_1088782433300026089Miscanthus RhizosphereMSPSTLVRVQWVLEWFMPSGRAEALLGDLLEERRLRLHVGSPASVARWYWKQLASSLPVLLWAS
Ga0207676_1125506223300026095Switchgrass RhizosphereMSPSTIALSQQILARLMPPAHAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVAS
Ga0207674_1017115313300026116Corn RhizosphereMSPSTLLRAQWLLTWLMPSAYAEALLGDLLEERRLRLDAGSPAGVARWYWIQLASSLPVLIWASMYRRSSFLTLVIAVASYLA
Ga0209969_104438823300027360Arabidopsis Thaliana RhizosphereMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVASYVAANGIQFVLWSALS
Ga0247819_1046265413300028608SoilMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQFASSVPTL
Ga0247825_1135379023300028812SoilMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAESQVSVAGWYWRQFASSVPALLWASVRRGAW
Ga0307408_10020494733300031548RhizosphereMSPSTIALSQRILSRLMPPAQAEALLGDLIEERRLRLKAGSHVSVAGWYWRQLASSVPTLLWASVRRGAWLITVVTAVASYVAAVG
Ga0307408_10213339423300031548RhizosphereMSPWTLALSQRILARLMPPAQAEALLGDLLEECRLRLQAGSHVSVAGWYSRQLASSVSVLLWASMRRGAWLVTVVTAVASFIAALGIQLVLG
Ga0310886_1076072623300031562SoilMSPSTLVRVQWILACLMPSARAEALLGDLLEERRLRLHVGSPARVARWYWMQLASSLPVLLWASLHRRSSFLTLVIAV
Ga0310813_1190583423300031716SoilMSPSTLVRVQWILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLPVLLWVSLYRRS
Ga0310813_1229566613300031716SoilMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQFASSVPTLLWASVRRGAWLITVVTAVASYVAANGIQFV
Ga0307469_1006690243300031720Hardwood Forest SoilMSPSTIALSQRILARLMPPAHAEALLGDLLEERRLRLQAGSHVSVAGWYWRQLASSVSALLWASVRRGAWLITVV
Ga0310892_1073528713300031858SoilMSPSTLVRVQWVLEWFMPSGRAEALLGDLLEERRLRLHVGSPVSVARWYWKQLASSLPVLLWASLHR
Ga0310893_1004476633300031892SoilMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQFASSVPTLLWASVRRGAWLITVVT
Ga0310893_1054435413300031892SoilMSPSTLVRVQWILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASS
Ga0310901_1000451713300031940SoilMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQFASSVPTLLWAS
Ga0310885_1029626913300031943SoilMSPSTLVRVQWILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLAVLLW
Ga0310903_1000558913300032000SoilMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASS
Ga0310902_1001839943300032012SoilMSPSTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQFASSVPTLLWASVRRGAWLITVVTAVASYVA
Ga0315912_1067068413300032157SoilMSSSTLLRVHWMLTWLMPSPYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLPVLLWASLCRRSSLLT
Ga0315912_1113102723300032157SoilMEARMNPSILVRMQGILAWLMPSAHAEALLGDLLEERRLRLHVSSPASVARWYWMQLASSLPVLLWASLQRRFSFFTLVAAIASYF
Ga0307471_10383188713300032180Hardwood Forest SoilMSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTA
Ga0307472_10160594613300032205Hardwood Forest SoilMSPSTIALSQRILARLMPPAQAEALVGDLLEERRLRLQAGSHVNVAGWYWTQLASSVPVLLWASVRRGAWLIPVVTAVASYIAAAGIQLALGYS
Ga0247829_1105012213300033550SoilMSPSTLALSQRILARLMPPAQAEALVGDLLEERRLRLQAGSQVSVAGWYWRQLASSVSALLWASVRRGAWLI
Ga0373895_060476_310_5763300034075Sediment SlurryMSPSTLALSERILARLMPPAQAEALVGDLLEERRLRLQAGSQVSVAGWYWRQLASSVSALLWASVRRGAWLITVVTAVASYVAANGIQF
Ga0314780_170097_322_5493300034659SoilMSPSTLALSQRILARLMPPAQAEALVGDLLEERRLRLQAGSHVSVAGWYWRQLASSVSALLWASVRRGAWLITVVT
Ga0314782_207450_324_5093300034661SoilMSGSTLALSQRILALLMPPAQAEALLGDLLEEGRLRLQAGSQVSVAGWYWRQFASSVPTLLW
Ga0314800_067067_1_2583300034675SoilMSGSTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVSALLWASVRRGAWLITVVTAVASYIAATG
Ga0373917_0085948_302_5263300034692Sediment SlurryMSPLTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQASVAGWYWRQLASSVPALLWASVRRGAWLITVV
Ga0373948_0128945_2_1873300034817Rhizosphere SoilMSPSTIALSQRILAWLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLW


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