Metagenome / Metatranscriptome Family F093926

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F093926
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	135 residues
Representative Sequence	MTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEPLQ
Number of Associated Samples	90
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	49.52 %
% of genes near scaffold ends (potentially truncated)	58.49 %
% of genes from short scaffolds (< 2000 bps)	72.64 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (99.057 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil (8.491 % of family members)
Environment Ontology (ENVO)	Unclassified (51.887 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (69.811 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.07% β-sheet: 18.25% Coil/Unstructured: 38.69%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF08450	SGL	30.19
PF00072	Response_reg	29.25
PF00593	TonB_dep_Rec	2.83
PF00154	RecA	1.89
PF13360	PQQ_2	1.89
PF02806	Alpha-amylase_C	1.89
PF07733	DNA_pol3_alpha	0.94
PF01061	ABC2_membrane	0.94
PF13411	MerR_1	0.94
PF13442	Cytochrome_CBB3	0.94
PF00171	Aldedh	0.94
PF01042	Ribonuc_L-PSP	0.94
PF14066	DUF4256	0.94
PF00817	IMS	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	30.19
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	30.19
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	1.89
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	1.89
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	1.89
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	1.89
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.94
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.94
COG0389	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	Replication, recombination and repair [L]	0.94
COG0587	DNA polymerase III, alpha subunit	Replication, recombination and repair [L]	0.94
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.94
COG2176	DNA polymerase III, alpha subunit (gram-positive type)	Replication, recombination and repair [L]	0.94
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.06 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.06 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.06 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	72.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.94 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.32 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.94 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.94 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	10.38 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.94 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10.38 %
Cryptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales	0.94 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.94 %
Cryptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae	0.94 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.94 %
Cryptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium	0.94 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Unclassified	root	N/A	0.94 %

Name	Rank	Taxonomy	Distribution
Cryptosporangium arvum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium → Cryptosporangium arvum	0.94 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.94 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.94 %
Unclassified	root	N/A	0.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000156\|NODE_c0515119	All Organisms → cellular organisms → Bacteria → Acidobacteria	1085	Open in IMG/M
3300000156\|NODE_c0682135	All Organisms → cellular organisms → Bacteria	3096	Open in IMG/M
3300003319\|soilL2_10185984	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1715	Open in IMG/M
3300003321\|soilH1_10034814	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5624	Open in IMG/M
3300003323\|rootH1_10397902	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300004114\|Ga0062593_100000463	All Organisms → cellular organisms → Bacteria	12139	Open in IMG/M
3300004479\|Ga0062595_100002383	All Organisms → cellular organisms → Bacteria	4654	Open in IMG/M
3300004479\|Ga0062595_100010742	All Organisms → cellular organisms → Bacteria → Acidobacteria	3005	Open in IMG/M
3300004480\|Ga0062592_101120415	All Organisms → cellular organisms → Bacteria → Acidobacteria	729	Open in IMG/M
3300004643\|Ga0062591_100291568	All Organisms → cellular organisms → Bacteria → Acidobacteria	1277	Open in IMG/M
3300005329\|Ga0070683_100527836	All Organisms → cellular organisms → Bacteria → Acidobacteria	1128	Open in IMG/M
3300005334\|Ga0068869_100153371	All Organisms → cellular organisms → Bacteria	1788	Open in IMG/M
3300005344\|Ga0070661_100434651	All Organisms → cellular organisms → Bacteria → Acidobacteria	1042	Open in IMG/M
3300005344\|Ga0070661_101075448	All Organisms → cellular organisms → Bacteria → Acidobacteria	669	Open in IMG/M
3300005435\|Ga0070714_100006407	All Organisms → cellular organisms → Bacteria	9088	Open in IMG/M
3300005435\|Ga0070714_100166953	All Organisms → cellular organisms → Bacteria	1995	Open in IMG/M
3300005436\|Ga0070713_100072597	All Organisms → cellular organisms → Bacteria → Proteobacteria	2911	Open in IMG/M
3300005437\|Ga0070710_10776909	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300005439\|Ga0070711_101436510	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300005440\|Ga0070705_100051494	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2401	Open in IMG/M
3300005444\|Ga0070694_101170299	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300005456\|Ga0070678_100215495	All Organisms → cellular organisms → Bacteria	1593	Open in IMG/M
3300005529\|Ga0070741_10414277	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1235	Open in IMG/M
3300005529\|Ga0070741_11378569	All Organisms → cellular organisms → Bacteria → Acidobacteria	587	Open in IMG/M
3300005530\|Ga0070679_100660560	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300005539\|Ga0068853_100153538	All Organisms → cellular organisms → Bacteria	2073	Open in IMG/M
3300005547\|Ga0070693_100956526	All Organisms → cellular organisms → Bacteria → Acidobacteria	645	Open in IMG/M
3300005563\|Ga0068855_100168478	All Organisms → cellular organisms → Bacteria	2481	Open in IMG/M
3300005564\|Ga0070664_101441384	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300005576\|Ga0066708_10546612	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300005577\|Ga0068857_100876032	All Organisms → cellular organisms → Bacteria → Acidobacteria	860	Open in IMG/M
3300005614\|Ga0068856_100397363	All Organisms → cellular organisms → Bacteria → Proteobacteria	1398	Open in IMG/M
3300005616\|Ga0068852_100262385	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1659	Open in IMG/M
3300005719\|Ga0068861_101004621	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300005840\|Ga0068870_10028647	All Organisms → cellular organisms → Bacteria	2798	Open in IMG/M
3300005841\|Ga0068863_102456749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium → Cryptosporangium arvum	530	Open in IMG/M
3300005842\|Ga0068858_100064451	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3391	Open in IMG/M
3300006358\|Ga0068871_101306444	All Organisms → cellular organisms → Bacteria → Acidobacteria	682	Open in IMG/M
3300006804\|Ga0079221_11558754	All Organisms → cellular organisms → Bacteria → Acidobacteria	533	Open in IMG/M
3300006854\|Ga0075425_100944180	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300006871\|Ga0075434_102185208	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300006881\|Ga0068865_100022072	All Organisms → cellular organisms → Bacteria → Acidobacteria	4146	Open in IMG/M
3300006904\|Ga0075424_101131385	All Organisms → cellular organisms → Bacteria → Acidobacteria	834	Open in IMG/M
3300009093\|Ga0105240_10299680	All Organisms → cellular organisms → Bacteria → Acidobacteria	1839	Open in IMG/M
3300009098\|Ga0105245_10292300	All Organisms → cellular organisms → Bacteria → Acidobacteria	1596	Open in IMG/M
3300009148\|Ga0105243_11971582	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300009174\|Ga0105241_10142472	All Organisms → cellular organisms → Bacteria → Acidobacteria	1953	Open in IMG/M
3300009174\|Ga0105241_12528299	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300009553\|Ga0105249_11068895	All Organisms → cellular organisms → Bacteria → Acidobacteria	877	Open in IMG/M
3300010337\|Ga0134062_10452684	All Organisms → cellular organisms → Bacteria → Acidobacteria	637	Open in IMG/M
3300010358\|Ga0126370_11088279	All Organisms → cellular organisms → Bacteria → Acidobacteria	736	Open in IMG/M
3300010371\|Ga0134125_10848121	All Organisms → cellular organisms → Bacteria → Acidobacteria	1004	Open in IMG/M
3300010373\|Ga0134128_11220170	All Organisms → cellular organisms → Bacteria → Acidobacteria	829	Open in IMG/M
3300010375\|Ga0105239_12588770	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300010396\|Ga0134126_10104158	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3485	Open in IMG/M
3300010396\|Ga0134126_10130091	All Organisms → cellular organisms → Bacteria	3069	Open in IMG/M
3300010396\|Ga0134126_10148100	All Organisms → cellular organisms → Bacteria → Acidobacteria	2846	Open in IMG/M
3300010396\|Ga0134126_10272385	All Organisms → cellular organisms → Bacteria → Acidobacteria	1996	Open in IMG/M
3300010396\|Ga0134126_10472865	All Organisms → cellular organisms → Bacteria → Acidobacteria	1448	Open in IMG/M
3300010398\|Ga0126383_10611844	All Organisms → cellular organisms → Bacteria → Acidobacteria	1162	Open in IMG/M
3300010399\|Ga0134127_10165645	All Organisms → cellular organisms → Bacteria → Acidobacteria	2023	Open in IMG/M
3300010403\|Ga0134123_12403309	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300012353\|Ga0137367_10063201	All Organisms → cellular organisms → Bacteria	2761	Open in IMG/M
3300012354\|Ga0137366_10005622	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9837	Open in IMG/M
3300012971\|Ga0126369_10199264	All Organisms → cellular organisms → Bacteria	1929	Open in IMG/M
3300013100\|Ga0157373_10956059	All Organisms → cellular organisms → Bacteria → Acidobacteria	638	Open in IMG/M
3300013100\|Ga0157373_11323962	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300013307\|Ga0157372_10117784	All Organisms → cellular organisms → Bacteria → Acidobacteria	3047	Open in IMG/M
3300013307\|Ga0157372_10601524	All Organisms → cellular organisms → Bacteria → Acidobacteria	1282	Open in IMG/M
3300014325\|Ga0163163_10600968	All Organisms → cellular organisms → Bacteria → Acidobacteria	1163	Open in IMG/M
3300014969\|Ga0157376_11111686	All Organisms → cellular organisms → Bacteria → Acidobacteria	816	Open in IMG/M
3300015371\|Ga0132258_10847431	All Organisms → cellular organisms → Bacteria → Acidobacteria	2306	Open in IMG/M
3300015372\|Ga0132256_101055539	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	927	Open in IMG/M
3300015373\|Ga0132257_101962957	All Organisms → cellular organisms → Bacteria → Acidobacteria	754	Open in IMG/M
3300017930\|Ga0187825_10416059	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300019361\|Ga0173482_10553684	All Organisms → cellular organisms → Bacteria → Acidobacteria	569	Open in IMG/M
3300020070\|Ga0206356_10916873	All Organisms → cellular organisms → Bacteria → Acidobacteria	865	Open in IMG/M
3300021445\|Ga0182009_10020092	All Organisms → cellular organisms → Bacteria → Acidobacteria	2515	Open in IMG/M
3300025899\|Ga0207642_10009650	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3367	Open in IMG/M
3300025911\|Ga0207654_10145438	All Organisms → cellular organisms → Bacteria → Acidobacteria	1516	Open in IMG/M
3300025912\|Ga0207707_10066784	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3132	Open in IMG/M
3300025913\|Ga0207695_10077878	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3366	Open in IMG/M
3300025913\|Ga0207695_10189833	All Organisms → cellular organisms → Bacteria → Acidobacteria	1972	Open in IMG/M
3300025914\|Ga0207671_10507560	All Organisms → cellular organisms → Bacteria → Acidobacteria	961	Open in IMG/M
3300025917\|Ga0207660_10270280	All Organisms → cellular organisms → Bacteria → Acidobacteria	1347	Open in IMG/M
3300025920\|Ga0207649_11418250	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300025927\|Ga0207687_10733110	All Organisms → cellular organisms → Bacteria → Acidobacteria	840	Open in IMG/M
3300025933\|Ga0207706_10160250	All Organisms → cellular organisms → Bacteria → Acidobacteria	1978	Open in IMG/M
3300025934\|Ga0207686_10390917	All Organisms → cellular organisms → Bacteria → Acidobacteria	1057	Open in IMG/M
3300025944\|Ga0207661_12047259	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300025945\|Ga0207679_10029925	All Organisms → cellular organisms → Bacteria → Acidobacteria	3796	Open in IMG/M
3300025945\|Ga0207679_11331955	All Organisms → cellular organisms → Bacteria → Acidobacteria	659	Open in IMG/M
3300025960\|Ga0207651_12099318	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300025981\|Ga0207640_11040431	All Organisms → cellular organisms → Bacteria → Acidobacteria	722	Open in IMG/M
3300025986\|Ga0207658_10814965	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300026035\|Ga0207703_10009080	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7828	Open in IMG/M
3300026035\|Ga0207703_10056814	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3189	Open in IMG/M
3300026078\|Ga0207702_11194182	All Organisms → cellular organisms → Bacteria → Acidobacteria	755	Open in IMG/M
3300026089\|Ga0207648_10598962	All Organisms → cellular organisms → Bacteria → Acidobacteria	1016	Open in IMG/M
3300026116\|Ga0207674_12207979	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300026118\|Ga0207675_100560322	All Organisms → cellular organisms → Bacteria → Acidobacteria	1143	Open in IMG/M
3300028381\|Ga0268264_10994998	All Organisms → cellular organisms → Bacteria → Acidobacteria	845	Open in IMG/M
3300031996\|Ga0308176_10849546	All Organisms → cellular organisms → Bacteria → Acidobacteria	956	Open in IMG/M
3300033412\|Ga0310810_10830514	All Organisms → cellular organisms → Bacteria → Acidobacteria	828	Open in IMG/M
3300033412\|Ga0310810_10901038	All Organisms → cellular organisms → Bacteria → Acidobacteria	777	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	54.72%
Environmental	Environmental	43.40%
Engineered	Engineered	1.89%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	54.72%
Terrestrial	Environmental → Terrestrial	42.45%
Solid Waste	Engineered → Solid Waste	1.89%
Aquatic	Environmental → Aquatic	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.70%
Roots	Host-Associated → Plants → Roots	1.89%
Grass	Engineered → Solid Waste → Grass	1.89%
Freshwater	Environmental → Aquatic → Freshwater	0.94%
Rhizome	Host-Associated → Plants → Rhizome	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	18.87%
Loam	Environmental → Terrestrial → Soil → Loam	12.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.89%
Composting	Engineered → Solid Waste → Grass → Composting	1.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.94%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.94%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	18.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.43%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.89%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	1.89%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	8.49%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	7.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	7.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.60%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	6.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.89%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.89%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	1.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.94%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003323	Sugarcane root Sample H1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
NODE_05151192	3300000156	Sugar Cane Bagasse Incubating Bioreactor	VAIMKGWRGTKFALVVHPELSVLAQYQTLLSKNGFSTVVARDLPTALLAITQHYFDVAIVSSQLSEAGDGWPLAGVLHLVFPGSYISVLVPGADLLTLQSAINSGVQDVYETTQSP
NODE_06821354	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MTGWRGAKFALVVHPELSVLSQYQSQLSNNGFTTVVARDVPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAESKRSEESLQ*
soilL2_101859841	3300003319	Sugarcane Root And Bulk Soil	MSGWRGSRFALVVHPELSVLSQYQTLLSGKGFTTVVARDLPTALLAMTQHYFDLAIVSSQLGEAGDGWPLAGVLHLLFPVSYIGVLVPGTDLLTLQSAINSGVQDVYEVTQSPQSVVSAIVASAKLAESKRNTHEGPLQ*
soilH1_100348141	3300003321	Sugarcane Root And Bulk Soil	MSGWRGTKFALVVHPELSVLSQYQTLLSKNGFTTVVARDLPTALLAVTQHYFDIAIVSSQLSEAGDGWPLAGVLHLVFPGSYISVLVPGADLLTLQSAINSGVQDVYEITESPKSVVSAVMAAAKLAESKSPPHQDHLQ*
rootH1_103979023	3300003323	Sugarcane Root And Bulk Soil	MSGWRGTKFALVVHPELSVLSQYQTLLSKNGFTTVVARDLPTALLAVTQHYFDIAIVSSQLSEAGDGWPLAGVLHLVFPGSYISVLVPGADLLTLQSAINSGVQDVYEITESPKSVVSAVMAAAKLAESKSRPHQDHLQ*
Ga0062593_1000004635	3300004114	Soil	MTGWRGAKFALVVHPELSVLSQYQSQLSNHGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ*
Ga0062595_1000023834	3300004479	Soil	MTGWRGTKFALVVHPDLSVLSQYQSLLSKNGFTTVVARDLPTALLAITQHYFDIAIVASQLAEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEISQSPQNVVKASIAAAKSAEAKRSEGTLQ*
Ga0062595_1000107422	3300004479	Soil	MTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEPLQ*
Ga0062592_1011204152	3300004480	Soil	SRSAGRLLRLEAIGCGRIEAGVEPFGNDELDRPQVALMTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEPLQ*
Ga0062591_1002915682	3300004643	Soil	EAIGCGRIEAGVEPFGNDELDRPQVALMTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGYYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEPLQ*
Ga0070683_1005278362	3300005329	Corn Rhizosphere	QSLLSKNGFTTVVARDLPTALLAITQHYFDIAIVASQLAEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEISQSPQNVVKASIAAAKSAEAKRSEGTLQ*
Ga0068869_1001533712	3300005334	Miscanthus Rhizosphere	MTGWRGAKFALVVHPELSVLSQYQSQLSNNGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ*
Ga0070661_1004346511	3300005344	Corn Rhizosphere	SNNGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ*
Ga0070661_1010754481	3300005344	Corn Rhizosphere	MTGWRGTKFALVVHPDLSVLSQYQSLLSNNGFTTVVARDLPTALLAITQHYFDIAIVASQLAEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEISQSPQNVVKASIAAAKSAEAKRSEGTLQ*
Ga0070714_1000064076	3300005435	Agricultural Soil	VAIMSGWRGTKFALVVHPELGVLSQYQALLSKSGFTTVVARDLPTALLAITQHYFDVSIVSSQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINSGVQDVYEITQSPKSVVSAVVAAAKLAESKRPPSEGSVQ*
Ga0070714_1001669534	3300005435	Agricultural Soil	MSGWRGSKFALVVHPDLSVLAQYQTLLSGKGFTTVVARDLPTALLAMTQHYFDLSIVSSQLGEAGDGWPLAGVLHLLFPGSYIGVLVPGTDLLTLQSAINSGVQDVYEITQSPQSVVNAIIASANLAESKGRHEGSLQ*
Ga0070713_1000725972	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSGWRGSKFALVVHPDLSVLSQYQTLLASGGFTTVVARDLPTALLAITQHFFDVAVVSSQLSEAGDGWPLAGVLHLVFPQSYIGVLAPGTDLLTLQSAINSGVQDVYEITQTPQNVVSALLAATNNPATLNPKKNPPDAPQVH*
Ga0070710_107769092	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSGWRGTKFALVVHPELGVLSQYQALLSKSGFTTVVARDLPTALLAITQHYFDVSIVSSQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINSGVQDVYEITQSPKSV
Ga0070711_1014365101	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSGWRGSKFALVVHPDLSVLSQYQTLLASNGFTTVVARDLPTALLAITQHFFDVAVVSSQLSEAGDGWPLAGVLHLVFPVSYIGVLVPGADLLTLQSAINSGVQDVYEISQTPQNVVSA
Ga0070705_1000514943	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	PFGNDELDRPQVALMTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ*
Ga0070694_1011702992	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	LSVLSQYQSQLSNHGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ*
Ga0070678_1002154951	3300005456	Miscanthus Rhizosphere	MTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSP
Ga0070741_104142773	3300005529	Surface Soil	MSGWRGSRFALVVHPELSVLSQYQTLLSSKGFTTVVARDLPTALLAMTQHYFDLAIVSSQLGEAGDGWPLAGILHLLFPVSYIGVLVPGTDLLTLQSAINSGVQDVYEVTQSPQSVVSAIVASAKLAES
Ga0070741_113785692	3300005529	Surface Soil	LSVLAQYQTLLSGKGFTTVVARDLPTALLAMTQHYFDLSIVSSQLGEAGDGWPLAGVLHLLFPGSYIGVLVPGTDLLTLQSAINSGVQDVYEITQSPQSVVNAIIASANLAESKGRHEGSLQ*
Ga0070679_1006605601	3300005530	Corn Rhizosphere	RPEPARGSQHRGATVAVMSGWRGTKFALIVHPELRVLAQYQTLLSKNGVTTVVARDLPTALLAITQHYFDIAIVSSQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINSGVQDVYEITQSPQSVVRAVVAAAKLVESNKPSGHLQ*
Ga0068853_1001535383	3300005539	Corn Rhizosphere	MSGWRGTKFALIVHPELRVLAQYQTLLSKNGVTTVVARDLPTALLAITQHYFDIAIVSSQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINSGVQDVYEITQSPQSVVRAVVAAAKLVESNKPSGHLQ*
Ga0070693_1009565262	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MTGWRGAKFALVVHPELSVLSQYQSQLSNHGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQYIGKPPPPSPHQCAR*
Ga0068855_1001684784	3300005563	Corn Rhizosphere	VAVMSGWRGTKFALIVHPELRVLAQYQTLLSKNGVTTVVARDLPTALLAITQHYFDIAIVSSQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINSGVQDVYEITQSPQSVVRAVVAAAKLVESNKPSGHLQ*
Ga0070664_1014413841	3300005564	Corn Rhizosphere	GTKFALVVHPDLSVLSQYQSLLSKNGFTTVVARDLPTALLAITQHYFDIAIVASQLAEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEISQSPQNVVKASIAAAKSAEAKRSEGTLQ*
Ga0066708_105466121	3300005576	Soil	MRGWRGTKFALVVHPDLAVLSQYQGLLAADGFSTVVARDLPTALMVITQHYFDLAIVSSQLGEAGDGWPLAGILHMVFPGSYIGVLVPGADLLTLQSAINSGVQDVYEMTETPQTVVAAAIAAAKTSESQQPGAEGS
Ga0068857_1008760322	3300005577	Corn Rhizosphere	SQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEPLQ*
Ga0068856_1003973632	3300005614	Corn Rhizosphere	MSGWRGSKFALVVHPDLSVLSQYQSLLSSSGFTTVVARDLPTALLAITQHFFDVAIVSSQLSEAGDGWPLAGVLHLVFPQSYIGVLVPGADLLTLQSAINSGVQDVYEITQTPQSVVSALLAATSNSATRNPKRNPPDTAQVH*
Ga0068852_1002623851	3300005616	Corn Rhizosphere	PDLSVLSQYQSLLSKNGFTTVVARDLPTALLAITQHYFDIAIVASQLAEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEISQSPQNVVKASIAAAKSAEAKRSEGTLQ*
Ga0068861_1010046212	3300005719	Switchgrass Rhizosphere	FGHGELRGSRVAVMTGWRGAKFALVVHPELSVLSQYQSQLSNHGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ*
Ga0068870_100286474	3300005840	Miscanthus Rhizosphere	MTGWRGAKFALVVHPELSVLSQYQSQLSNHGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLPLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKA
Ga0068863_1024567491	3300005841	Switchgrass Rhizosphere	RGQVAAMTGWRGTKFALVVHPDLSVLSQYQSLLSKNGFTTVVARDLPTALLAITQHYFDIAIVASQLAEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEISQSPQNVVKASIAAAKSAEAKRSEGTLQ*
Ga0068858_1000644514	3300005842	Switchgrass Rhizosphere	ELSVLSQYQSQLSNHGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ*
Ga0068871_1013064441	3300006358	Miscanthus Rhizosphere	MSGWRGSKFALVVHPDLSVLSQYQSLLSSSGFTTVVARDLPTALLAITQHFFDVAIVSSQLSEAGDGWPLAGVLHLVFPQSYIGVLVPGADLLTLQSAINSGVQDVYEITQTPQSVVRALLAATSNSATRNPKRNPPDTAQVH*
Ga0079221_115587541	3300006804	Agricultural Soil	PELSVLTQYQTLLSSKGFSTVVARDLPTALLAITQHYFDLAIVSSQLGEAGDGWPLAGVLHLVFPNAYIGVLVPGADLLTLQSAINSGVQEVYEITQSPQSVVSAAIAAAKLAESRKPSSEGSLQ*
Ga0075425_1009441803	3300006854	Populus Rhizosphere	MTGWRGAKFALVVHPELSVLSQYQSQLSNHGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEES
Ga0075434_1021852082	3300006871	Populus Rhizosphere	PQVALMTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEPLQ*
Ga0068865_1000220724	3300006881	Miscanthus Rhizosphere	MTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFYIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEPLQ*
Ga0075424_1011313851	3300006904	Populus Rhizosphere	QYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ*
Ga0075436_1006665341	3300006914	Populus Rhizosphere	VAVMSGWRGTKFALIVHPELRVLAQYQTLLSKNGVTTVVARDLPTALLAITQHYFDIAIVSSQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINSGVQDVYEITQ
Ga0105240_102996801	3300009093	Corn Rhizosphere	MSGWRGSKFALVVHPDLSVLAQYQTLLSGKGFTTVVARDLPTALLAMTQHYFDLSIVSSQLGEAGDGWPLAGVLHLLFPGSYIGVLVPGTDLLTLQSAINSGVQDVYEITQSPQSVVNAIIASANLTESKGRHEGSLQ*
Ga0105245_102923003	3300009098	Miscanthus Rhizosphere	ALMTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEPLQ*
Ga0105243_119715821	3300009148	Miscanthus Rhizosphere	VEPFGNDELDRPQVALMTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEPLQ*
Ga0105241_101424723	3300009174	Corn Rhizosphere	MSGWRGTKFALIVHPELRVLAQYQTLLSKNGVTTVVARDLPTALLAITQHYFDIAIVSSQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINSGVQDVYEITQSPQSVVRAVVAAAKLVESNKPSSGHLQ*
Ga0105241_125282991	3300009174	Corn Rhizosphere	KFALVVHPDLSVLSQYQSLLSSSGFTTVVARDLPTALLAITQHFFDVAIVSSQLSEAGDGWPLAGVLHLVFPQSYIGVLVPGADLLTLQSAINSGVQDVYEITQTPQSVVSALLAATSNSATRNPKRNPPDTAQVH*
Ga0105249_110688952	3300009553	Switchgrass Rhizosphere	VLSQYQSQLSNNGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ*
Ga0134062_104526842	3300010337	Grasslands Soil	MSGWRGSKFALVVHPDLSVLSQYQTLLASNGFTTVVARDLPTALLAITQHFFDVAIVSSQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINSGVQDVYETTQTPQSVVSALLAATSNPAPGNPKKNPQDASQIQ*
Ga0126370_110882792	3300010358	Tropical Forest Soil	MTGWRGTKFALVVHPELSVLSQYQSLLSKSGVTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVFEITQSPQNVVKASMAAAKLAESKRSEEPLQ*
Ga0134125_108481211	3300010371	Terrestrial Soil	QALLAGNGFTTVVARDLPTALLAITQHYFDLAIVSSQITESGDGWPLAGVLHLVYPKSFVAVLVPGTDLLTLQAAINSGVQDVYELTETPKRVVSSMLAAMQTPGATADSSPSEKVH*
Ga0134128_112201702	3300010373	Terrestrial Soil	MSVWRGGKFALIVHPELSVLSQYQTLLAGNGFTTVVARDLPTALMAITQHYFDLAIVSSQISETGDGWPLAGVLHLVYPKSFVGVLVPGTDLLTLQAAINSGVQDVYELTETPKKVVNSMLAAMQTPHPVADSGASEKVH*
Ga0105239_125887701	3300010375	Corn Rhizosphere	HPDLSVLAQYQTLLSGKGFTTVVARDLPTALLAMTQHYFDLSIVSSQLGEAEDGWPLAGVLHLLFPGSYIGVLVPGTDLLTLQSAINSGVQDVYEITQSPQSVVNAIIASANLAESKGRHEGSLQ*
Ga0134126_101041581	3300010396	Terrestrial Soil	VLSQYQSQLSNHGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ*
Ga0134126_101300911	3300010396	Terrestrial Soil	MSVWRGGKFALIVHPELSVLSQYQALLAGNGFTTVVARDLPTALLAITQHYFDLAIVSSQITESGDGWPLAGVLHLVYPKSFVAVLVPGTDLLTLQAAINSGVQDVYELTETPKRVVSSMLAAMQTPGATADSSPSEKVH*
Ga0134126_101481006	3300010396	Terrestrial Soil	MSVWRGGKFALIVHPELSVLSQYQTLLAGNGFTTVVARDLPTALMAITQHYFDLAIVSSQISETGDGWPLAGVLHLVYSKSFVGVLVPGTDLLTLQAAINSGVQDVYELTETPKKVVNSMLAAMQTPHPVADSGASEKVH*
Ga0134126_102723852	3300010396	Terrestrial Soil	MNGWRGTKFALVVHPELSVLTQYQTLLSTNGFSTVVARDLPTALLAITQHYFDLAIVSSQLGEAGDGWPLAGVLHLVFPNAYIGVLVPGADLLSLQSAINSGVQEVYEITQSPKSVVSAAIAAAKLAESRKPSSEGSLQ*
Ga0134126_104728653	3300010396	Terrestrial Soil	MSGWRGVKFALIVHPELSVLSQYQSLLAANGFTTVVARDLPTALLAITQHYFDLAIVSSQISEAGDGWPLAGVLHLVFPKSFVGVLVPGTDLLTLQAAINSGVQDVYELTETPQKIVSSMLAAMKNPRQPAGSSEKVH*
Ga0126383_106118442	3300010398	Tropical Forest Soil	MTEWRGTKFALVVHPELSVLSQYQSLLSKNGFTTVVARDLPTSLLAITQHYFDIAIVASQLGEVGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEITQSPQSVVKASIAAASSAKSKRSEEALQ*
Ga0134127_101656451	3300010399	Terrestrial Soil	MTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEP
Ga0134123_124033092	3300010403	Terrestrial Soil	VVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEPLQ*
Ga0137367_100632012	3300012353	Vadose Zone Soil	VSGWRGSKFALVVHPELSVLSQYQTLLASNGFTTVVARDLPTALLAVTQHFFDVAVVSSQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINSGVQDVYEITQTPQNVVSALLAAMNDPATNNPKKNPPDSQVH*
Ga0137366_100056226	3300012354	Vadose Zone Soil	VSGWRGSKFALVVHPELSVLSQYQTLLASNGFTTVVARDLPTALLAVTQHFFDVAVVSSQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINSGVQDVYEITQTPQNVVSALLAATNDPATNNPKKNPPDSQVH*
Ga0126369_101992641	3300012971	Tropical Forest Soil	MTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFNLAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEITQSPQSVVKASIAAASSAKSKRSEEALQ*
Ga0157373_109560592	3300013100	Corn Rhizosphere	AGIKPLGHGEFRRGQVAAMTGWRGTKFALVVHPDLSVLSQYQSLLSKNGFTTVVARDLPTALLAITQHYFDIAIVASQLAEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEISQSPQNVVKASIAAAKSAEAKRSEGTLQ*
Ga0157373_113239621	3300013100	Corn Rhizosphere	VMSGWRGSKFALVVHPDLSVLAQYQTLLSGKGFTTVVARDLPTALLAMTQHYFDLSIVSSQLGEAGDGWPLAGVLHLLFPGSYIGVLVPGTDLLTLQSAINSGVQDVYEITQSPQSVVNAIIASANLAESKGRHEGSLQ*
Ga0157372_101177842	3300013307	Corn Rhizosphere	MSEWRGTKFALVVHPELSVLTQYQTLLSTNGFSTVVARDLPTALLAITQHYFDLAIVSSQLGEAGDGWPLAGVLHLVFPNAYIGVLVPGADLLTLQSAINSGVQEVYEITQSPQSVVSAAIAAAKLAESRKPSSEGSLQ*
Ga0157372_106015241	3300013307	Corn Rhizosphere	MSGWRGTKFALIVHPELRVLAQYQTLLSKNGVTTVVARDLPTALLAITQHYFDIAIVSSQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINSGVQDVYEITQSPQSVVRAVVA
Ga0163163_106009681	3300014325	Switchgrass Rhizosphere	RGTKFALVVHPDLSVLSQYQSLLSKNGFTTVVARDLPTALLAITQHYFDIAIVASQLAEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEISQSPQNVVKASIAAAKSAEAKRSEGTLQ*
Ga0157376_111116862	3300014969	Miscanthus Rhizosphere	MTGWRGAKFALVVHPELSVLSQYQSQLSNHGFTTVVARDVPTALLAITQHYFDIALVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ*
Ga0132258_108474311	3300015371	Arabidopsis Rhizosphere	MSGWRGTKFALVVHPELGLLSQYQSLLSSHGFSTVVARDLPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINSGVQDVFELTQSPSSVVKAMIASAKMAESKRSE
Ga0132256_1010555392	3300015372	Arabidopsis Rhizosphere	MSDWRGTKFALVVHPELGLLSQYQSLLSSHGFSTVVARDLPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINNGVQDVFETTQSPSSVVKAMIASAKMAESKRSEQSLQ*
Ga0132257_1019629572	3300015373	Arabidopsis Rhizosphere	HPELGLLSQYQSLLSSHGFSTVVARDLPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINNGVQDVFETTQSPSSVVKAMIASAKMAESKRSEQSLQ*
Ga0187825_104160591	3300017930	Freshwater Sediment	RRYQYRTEQVAAMSGWRGTKFALVVHPELSVLAQYQTLLSKNGFTTVVARDLPTALLAITQHYFDLAIVSSQLGEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINSGVQEVYEMTQPAQAVVPAIVAAAKLAESKKSASEGSLQ
Ga0173482_105536842	3300019361	Soil	GAKFALVVHPELSVLSQYQSQLSNHGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEPLQ
Ga0206356_109168732	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MSGWRGTKFALIVHPELRVLAQYQTLLSKNGVTTVVARDLPTALLAITQHYFDIAIVSSQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINSGVQDVYEITQSPQSVVRAVVAAAKLVESNKPSGHLQ
Ga0182009_100200921	3300021445	Soil	MSGWRGSKFALVVHPDLSVLAQYQTLLSGKGFTTVVARDLPTALLAMTQHYFDLSIVSSQLGEAGDGWPLAGVLHLLFPGSYIGVLVPGTDLLTLQSAINSGVQDVYEITQSPQSVVNAIIASA
Ga0207642_100096501	3300025899	Miscanthus Rhizosphere	VAVMTGWRGAKFALVVHPELSVLSQYQSQLSNHGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ
Ga0207654_101454381	3300025911	Corn Rhizosphere	AIGCGRIEAGVEPFGNDELDRPQVALMTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ
Ga0207707_100667844	3300025912	Corn Rhizosphere	VMTGWRGAKFALVVHPELSVLSQYQSQLSNHGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ
Ga0207695_100778785	3300025913	Corn Rhizosphere	VAVMSGWRGTKFALIVHPELRVLAQYQTLLSKNGVTTVVARDLPTALLAITQHYFDIAIVSSQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINSGVQDVYEITQSPQSVVRAVVAAAKLVESNKPSGHLQ
Ga0207695_101898332	3300025913	Corn Rhizosphere	MSGWRGSKFALVVHPDLSVLAQYQTLLSGKGFTTVVARDLPTALLAMTQHYFDLSIVSSQLGEAGDGWPLAGVLHLLFPGSYIGVLVPGTDLLTLQSAINSGVQDVYEITQSPQSVVNAIIASANLTESKGRHEGSLQ
Ga0207671_105075601	3300025914	Corn Rhizosphere	GTKFALVVHPDLSVLSQYQSLLSKNGFTTVVARDLPTALLAITQHYFDIAIVASQLAEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEISQSPQNVVKASIAAAKSAEAKRSEGTLQ
Ga0207660_102702803	3300025917	Corn Rhizosphere	MTGWRGAKFALVVHPELSVLSQYQSQLSNHGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ
Ga0207649_114182501	3300025920	Corn Rhizosphere	LLSKNGFTTVVARDLPTALLAITQHYFDIAIVASQLAEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEISQSPQNVVKASIAAAKSAEAKRSEGTLQ
Ga0207687_107331101	3300025927	Miscanthus Rhizosphere	SQYQSQLSNNGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ
Ga0207706_101602502	3300025933	Corn Rhizosphere	MTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEEPLQ
Ga0207686_103909171	3300025934	Miscanthus Rhizosphere	FALVVHPELSVLSQYQSQLSNHGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ
Ga0207661_120472591	3300025944	Corn Rhizosphere	QYQSLLSKNGFTTVVARDLPTALLAITQHYFDIAIVASQLAEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEISQSPQNVVKASIAAAKSAEAKRSEGTLQ
Ga0207679_100299253	3300025945	Corn Rhizosphere	MTGWRGAKFALVVHPELSVLSQYQSQLSNNGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ
Ga0207679_113319551	3300025945	Corn Rhizosphere	EFRRGQVAAMTGWRGTKFALVVHPDLSVLSQYQSLLSKNGFTTVVARDLPTALLAITQHYFDIAIVASQLAEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEISQSPQNVVKASIAAAKSAEAKRSEGTLQ
Ga0207651_120993181	3300025960	Switchgrass Rhizosphere	KAGIKPLGHGEFRRGQVAAMTGWRGTKFALVVHPDLSVLSQYQSLLSKNGFTTVVARDLPTALLAITQHYFDIAIVASQLAEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEISQSPQNVVKASIAAAKSAEAKRSEGTLQ
Ga0207640_110404312	3300025981	Corn Rhizosphere	AIGCGRIEAGVEPFGNDELDRPQVALMTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEPLQ
Ga0207658_108149651	3300025986	Switchgrass Rhizosphere	VKVFQSRVLQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEPLQ
Ga0207703_100090807	3300026035	Switchgrass Rhizosphere	ELSVLSQYQSQLSNHGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ
Ga0207703_100568144	3300026035	Switchgrass Rhizosphere	MTGWRGTKFALVVHPDLSVLSQYQSLRSKNGFTTVVARDLPTALLAITQHYFDIAIVASQLAEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEISQSPQNVVKASIAAAKSAEAKRSEGTLQ
Ga0207702_111941821	3300026078	Corn Rhizosphere	PDLSVLSQYQSLLSSSGFTTVVARDLPTALLAITQHFFDVAIVSSQLSEAGDGWPLAGVLHLVFPQSYIGVLVPGADLLTLQSAINSGVQDVYEITQTPQSVVSALLAATSNSATRNPKRNPPDTAQVH
Ga0207648_105989621	3300026089	Miscanthus Rhizosphere	MTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEPL
Ga0207674_122079791	3300026116	Corn Rhizosphere	LSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEPL
Ga0207675_1005603221	3300026118	Switchgrass Rhizosphere	QYQSQLSNHGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSKRSEESLQ
Ga0268264_109949981	3300028381	Switchgrass Rhizosphere	AMTGWRGTKFALVVHPDLSVLSQYQSLLSKNGFTTVVARDLPTALLAITQHYFDIAIVASQLAEAGDGWPLAGVLHLVFPGSYIGVLVPGADLLTLQSAINHGVQDVYEISQSPQNVVKASIAAAKSAEAKRSEGTLQ
Ga0308176_108495462	3300031996	Soil	MSGWRGTKFALVVHPELGVLSQYQSLLSANGFTTVVARDLPTALLAITQHYFDLSIVSSQLGEAGDGWPLAGVLHLVFPGSYIGVLVHGADLLTLQSAINSGVQDVYEITQSPQSVVSASIAASKLADSGKPSSGRPVH
Ga0310810_108305141	3300033412	Soil	RGSRSAGRLLRLEAIGCGRIEAGVEPFGNDELDRPQVALMTGWRGGKFALVVHPELSVLSQYQSLLSKHGFTTVVARDLPTALLAITQHYFDIAIVASQLGEAGDGWPLAGVLHLVFPGSYIGVLVAGADLLTLQSAINHGVQDVFEITQSPQSVVKASVAAAKLAESKKSGEPLQ
Ga0310810_109010381	3300033412	Soil	MTGWRGAKFALVVHPELSVLSQYQSQLSNHGFTTVVARDVPTALLAITQHYFDIAIVASQLSEAGDGWPLAGVLHLVFPGSYIGVLVPGDDLLTLQSAINNGVQDVFEFSQSPQSVVKASVAAAKLAVSK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093926

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences