NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F093924

Metagenome / Metatranscriptome Family F093924

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093924
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 45 residues
Representative Sequence LHSVDKISRSEERGFAASERKAAAQELYRDYTIERNRYKKPLN
Number of Associated Samples 94
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 1.89 %
% of genes near scaffold ends (potentially truncated) 98.11 %
% of genes from short scaffolds (< 2000 bps) 93.40 %
Associated GOLD sequencing projects 89
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (74.528 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(13.207 % of family members)
Environment Ontology (ENVO) Unclassified
(23.585 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(50.943 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 29.58%    β-sheet: 0.00%    Coil/Unstructured: 70.42%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF13519VWA_2 19.81
PF12700HlyD_2 0.94
PF02623FliW 0.94
PF00529CusB_dom_1 0.94
PF16576HlyD_D23 0.94
PF13534Fer4_17 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG1699Flagellar assembly factor FliWCell motility [N] 0.94


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A74.53 %
All OrganismsrootAll Organisms25.47 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000364|INPhiseqgaiiFebDRAFT_105316422Not Available809Open in IMG/M
3300000559|F14TC_101842293All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia815Open in IMG/M
3300000789|JGI1027J11758_12256648Not Available627Open in IMG/M
3300004104|Ga0058891_1470752Not Available540Open in IMG/M
3300004463|Ga0063356_100018785All Organisms → cellular organisms → Bacteria → Acidobacteria6419Open in IMG/M
3300004633|Ga0066395_10012244All Organisms → cellular organisms → Bacteria → Acidobacteria3209Open in IMG/M
3300004643|Ga0062591_100513836Not Available1032Open in IMG/M
3300004803|Ga0058862_12132139Not Available721Open in IMG/M
3300005174|Ga0066680_10523129Not Available746Open in IMG/M
3300005179|Ga0066684_11006624Not Available538Open in IMG/M
3300005186|Ga0066676_10836860All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83621Open in IMG/M
3300005187|Ga0066675_10144176All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1627Open in IMG/M
3300005187|Ga0066675_11174405All Organisms → cellular organisms → Bacteria → Acidobacteria570Open in IMG/M
3300005331|Ga0070670_101404274All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300005332|Ga0066388_101901826Not Available1062Open in IMG/M
3300005353|Ga0070669_100830728All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300005437|Ga0070710_10263410Not Available1112Open in IMG/M
3300005438|Ga0070701_10701201All Organisms → cellular organisms → Bacteria → Acidobacteria681Open in IMG/M
3300005441|Ga0070700_101681933Not Available544Open in IMG/M
3300005450|Ga0066682_10182922Not Available1340Open in IMG/M
3300005456|Ga0070678_102148584All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300005559|Ga0066700_10068676All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2240Open in IMG/M
3300005561|Ga0066699_10309679All Organisms → cellular organisms → Bacteria → Acidobacteria1125Open in IMG/M
3300005564|Ga0070664_100348154Not Available1347Open in IMG/M
3300005569|Ga0066705_10329159All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83966Open in IMG/M
3300005574|Ga0066694_10045733All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1983Open in IMG/M
3300005598|Ga0066706_10335719All Organisms → cellular organisms → Bacteria → Acidobacteria1196Open in IMG/M
3300005764|Ga0066903_105752370All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter651Open in IMG/M
3300005764|Ga0066903_106323755All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300006358|Ga0068871_101413258Not Available656Open in IMG/M
3300006800|Ga0066660_11582496All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300006844|Ga0075428_100625389Not Available1149Open in IMG/M
3300006853|Ga0075420_101326070Not Available618Open in IMG/M
3300006871|Ga0075434_100271594Not Available1715Open in IMG/M
3300006914|Ga0075436_100235658Not Available1301Open in IMG/M
3300007004|Ga0079218_13803954All Organisms → cellular organisms → Bacteria → Acidobacteria513Open in IMG/M
3300007255|Ga0099791_10412283Not Available651Open in IMG/M
3300009090|Ga0099827_10354213Not Available1249Open in IMG/M
3300009100|Ga0075418_10580004Not Available1206Open in IMG/M
3300009137|Ga0066709_103398305Not Available578Open in IMG/M
3300009137|Ga0066709_104416073Not Available513Open in IMG/M
3300009147|Ga0114129_12256650Not Available654Open in IMG/M
3300009148|Ga0105243_11532967Not Available691Open in IMG/M
3300009162|Ga0075423_10650963Not Available1111Open in IMG/M
3300009257|Ga0103869_10111237Not Available692Open in IMG/M
3300010047|Ga0126382_11499919Not Available620Open in IMG/M
3300010048|Ga0126373_12664074Not Available558Open in IMG/M
3300010141|Ga0127499_1210360Not Available641Open in IMG/M
3300010303|Ga0134082_10048722Not Available1623Open in IMG/M
3300010335|Ga0134063_10146581Not Available1093Open in IMG/M
3300010358|Ga0126370_11186732Not Available709Open in IMG/M
3300010360|Ga0126372_11024792Not Available839Open in IMG/M
3300010362|Ga0126377_11660126Not Available714Open in IMG/M
3300010366|Ga0126379_13560364Not Available522Open in IMG/M
3300010398|Ga0126383_12398652Not Available613Open in IMG/M
3300011119|Ga0105246_11413853Not Available650Open in IMG/M
3300011120|Ga0150983_10953628Not Available549Open in IMG/M
3300011120|Ga0150983_15272128Not Available537Open in IMG/M
3300011271|Ga0137393_10919734Not Available746Open in IMG/M
3300012401|Ga0134055_1351818Not Available650Open in IMG/M
3300012469|Ga0150984_114005072Not Available513Open in IMG/M
3300012895|Ga0157309_10276169Not Available558Open in IMG/M
3300012917|Ga0137395_10809890Not Available678Open in IMG/M
3300014154|Ga0134075_10581927Not Available507Open in IMG/M
3300014325|Ga0163163_10238688Not Available1867Open in IMG/M
3300014325|Ga0163163_12249958Not Available604Open in IMG/M
3300014878|Ga0180065_1168829Not Available504Open in IMG/M
3300015371|Ga0132258_10528241All Organisms → cellular organisms → Bacteria2954Open in IMG/M
3300015371|Ga0132258_12051672Not Available1438Open in IMG/M
3300015372|Ga0132256_102059827Not Available676Open in IMG/M
3300015372|Ga0132256_103248946Not Available547Open in IMG/M
3300015373|Ga0132257_100845200Not Available1145Open in IMG/M
3300015373|Ga0132257_104643276Not Available500Open in IMG/M
3300015374|Ga0132255_101064048Not Available1215Open in IMG/M
3300015374|Ga0132255_104040724Not Available623Open in IMG/M
3300016341|Ga0182035_11767079Not Available559Open in IMG/M
3300017659|Ga0134083_10012407All Organisms → cellular organisms → Bacteria → Acidobacteria2883Open in IMG/M
3300018031|Ga0184634_10310587Not Available723Open in IMG/M
3300018433|Ga0066667_10091535All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1994Open in IMG/M
3300018481|Ga0190271_13462123Not Available529Open in IMG/M
3300018482|Ga0066669_10050556All Organisms → cellular organisms → Bacteria → Acidobacteria2622Open in IMG/M
3300021178|Ga0210408_11391981All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300024323|Ga0247666_1073728Not Available681Open in IMG/M
3300025916|Ga0207663_11058774Not Available651Open in IMG/M
3300025926|Ga0207659_10779353Not Available821Open in IMG/M
3300025930|Ga0207701_10455302Not Available1098Open in IMG/M
3300025934|Ga0207686_11245911Not Available610Open in IMG/M
3300025934|Ga0207686_11443551Not Available567Open in IMG/M
3300026023|Ga0207677_11164189All Organisms → cellular organisms → Bacteria705Open in IMG/M
3300026296|Ga0209235_1266979Not Available525Open in IMG/M
3300026298|Ga0209236_1130670All Organisms → cellular organisms → Bacteria1095Open in IMG/M
3300026298|Ga0209236_1197080Not Available769Open in IMG/M
3300027873|Ga0209814_10361577Not Available636Open in IMG/M
3300027874|Ga0209465_10021941All Organisms → cellular organisms → Bacteria → Acidobacteria2948Open in IMG/M
3300027886|Ga0209486_10505423Not Available752Open in IMG/M
3300030990|Ga0308178_1163933Not Available519Open in IMG/M
3300031716|Ga0310813_10670971Not Available923Open in IMG/M
3300031910|Ga0306923_10936519Not Available946Open in IMG/M
3300031945|Ga0310913_10359041Not Available1032Open in IMG/M
3300032075|Ga0310890_11695674Not Available524Open in IMG/M
3300032076|Ga0306924_11401650Not Available746Open in IMG/M
3300032076|Ga0306924_11934819Not Available610Open in IMG/M
3300032157|Ga0315912_10552325Not Available917Open in IMG/M
3300032179|Ga0310889_10108375Not Available1194Open in IMG/M
3300032261|Ga0306920_100584871Not Available1653Open in IMG/M
3300034090|Ga0326723_0281806Not Available744Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil13.21%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere7.55%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil6.60%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil6.60%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil5.66%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere5.66%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.72%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil4.72%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.77%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.77%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.83%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.83%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.89%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere1.89%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.89%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.89%
River WaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water0.94%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.94%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.94%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.94%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.94%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.94%
Host-AssociatedHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated0.94%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.94%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.94%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.94%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.94%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.94%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.94%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.94%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000559Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemlyEnvironmentalOpen in IMG/M
3300000789Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300004104Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF218 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300004803Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009257Microbial communities of water from Amazon river, Brazil - RCM22EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010141Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012401Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012895Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2EnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014878Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200A_16_10DEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300024323Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027886Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)EnvironmentalOpen in IMG/M
3300030990Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032157Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soilEnvironmentalOpen in IMG/M
3300032179Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300034090Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00NEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10531642223300000364SoilKISRSEERGFAASERSKGAGQDLYRDYQMERNRYKKPLN*
F14TC_10184229323300000559SoilAAAEMILEGLYSVDKISRSEERGFIASDRKASSQELYRDYTMDRNRYKKPLN*
JGI1027J11758_1225664823300000789SoilLEGLHATDKISRSEERGFAASERSKGAXQDLYRDXXXERNRYKKPLN*
Ga0058891_147075223300004104Forest SoilIDKISRSEERGYTAPERKAASQDLYRDYTMERNRYKKPLN*
Ga0063356_10001878513300004463Arabidopsis Thaliana RhizosphereSDKIGRSEERGFIAAERKGPSQDLYRDYTLERSRSKKPLN*
Ga0066395_1001224443300004633Tropical Forest SoilAAGEMVLEGLHSMDKISRSEERGFAASERKVPGAQELYRDYTLERNRYKKPLN*
Ga0062591_10051383613300004643SoilLYASDKIGRSEERGFIGVERKTPTQELYRDYTLERGRSKKPLN*
Ga0058862_1213213923300004803Host-AssociatedLHSVDKISRSEERGFAASERKAAAQELYRDYTIERNRYKKPLN*
Ga0066680_1052312923300005174SoilHSMDKISRSEERGFAAPDRKTSQELYRDYTGERNRYKKPLN*
Ga0066684_1100662413300005179SoilYSIEKISRSEERGYAAVDRKASQELYRDYTMERNRYKKPLN*
Ga0066676_1083686013300005186SoilILEGLYSIEKISRSEERGYTAAERKASQDLYRDYTMERNRYKKPLN*
Ga0066675_1014417613300005187SoilELILEGLYSIEKISRSEERGYSAIDRKASQELYRDYTMERNRYKKPLN*
Ga0066675_1117440513300005187SoilEMILEGLHATDKISRSEERGFAASERSKGASQDLYRDYQMERNRYKKPLN*
Ga0070670_10140427423300005331Switchgrass RhizosphereSVDKISRSDERGFGAADRKAAAGAQELYRDYTLERNRYKKPLN*
Ga0066388_10190182613300005332Tropical Forest SoilMDKISRSEERGFAASDRKVPGSQELYRDYTLERNRYKKPLN*
Ga0070669_10083072813300005353Switchgrass RhizosphereVDKISRSDERGFGAADRKAAAGAQELYRDYTLERNRYKKPLN*
Ga0070710_1026341023300005437Corn, Switchgrass And Miscanthus RhizosphereGLHSIDKIGRSEERGFAATERKAAAQELYRDYTMERNRYKKPLN*
Ga0070701_1070120113300005438Corn, Switchgrass And Miscanthus RhizosphereILEGLYASDKIGRSEERGFIGVERKSQAQELYRDYTIERSRSKKPLN*
Ga0070700_10168193323300005441Corn, Switchgrass And Miscanthus RhizosphereMILEGLHSVDKISRSDERGFGAADRKAAAGAQELYRDYTLERNRYKKPLN*
Ga0066682_1018292213300005450SoilDKISRSEERGYAASERKSSSQELYRDYTIERNRYKKPLN*
Ga0070678_10214858433300005456Miscanthus RhizosphereHSIDKVGRSEERGYSGMERKSTPDMYRDYTKDLNRYKKPLN*
Ga0066700_1006867613300005559SoilGEMILEGLYSIEKISRSEERGYAASERKPAQELYRDYNMERNRYKKPLN*
Ga0066699_1030967913300005561SoilAAGEMILEGLHATDKISRSEERGFAASERTKGAAQDLYRDYQMERNRYKKPLN*
Ga0070664_10034815413300005564Corn RhizosphereSEERGFIGVERKTPTQELYRDYTLDRGRSKKPLN*
Ga0066705_1032915923300005569SoilILEGLYSIEKISRSEERGYAAVDRKATQELYRDYTMERNRYKKPLN*
Ga0066694_1004573333300005574SoilLEGLYSIEKISRSEERGYAAVDRKATQELYRDYTMERNRYKKPLN*
Ga0066706_1033571913300005598SoilEGLYSMDKISRSEERGYAASERKQPSQELYRDYTIERNRYKKPLN*
Ga0066903_10575237023300005764Tropical Forest SoilAGEMVLEGLHSIDKISRSEERGFAATERKAAAQDLYRDYTMERNRYKKPLN*
Ga0066903_10632375513300005764Tropical Forest SoilISRSEERGFAASERSKGASQDLYRDYQMERNRYKKPLN*
Ga0068871_10141325813300006358Miscanthus RhizosphereEGLHSIDKIGRSEERGFAAVERKAPAEMYRDYTKDINRYKKPLN*
Ga0066660_1158249623300006800SoilAAGEMILEGLYSIDKISRSEERGYTAPERKSAAQELYRDYTMERNRYKKPLN*
Ga0075428_10062538923300006844Populus RhizosphereDKISRSDERGFAASDRKSAATQELYRDYTMEKNRYKKPLN*
Ga0075420_10132607013300006853Populus RhizosphereRSEERGFAASDRKVPGAQELYRDYTLERNRYKKPLN*
Ga0075434_10027159433300006871Populus RhizosphereRSEERGFGAAERKAPGSQELYRDYTMERNRYKKPLN*
Ga0075436_10023565823300006914Populus RhizosphereISRSEERGFAASDLKAPGAQELYRDYTLERNRYKKPLN*
Ga0079218_1380395413300007004Agricultural SoilNRVAIGEFILEGLCANDKIGRSEERGFVALERKAAAQDLYRDYNLERNRHKKPLN*
Ga0099791_1041228313300007255Vadose Zone SoilRTEERGYAASERKPAQELYRDYNMERNRYKKPLN*
Ga0099827_1035421313300009090Vadose Zone SoilEMILEGLHSVDKISRSEERGFTASSERKQSQDLYRDYSMERNRHNKPLN*
Ga0075418_1058000413300009100Populus RhizosphereYASDKIGRSEERGFVGVERKSQAQELYRDYTLERSRSKKPLN*
Ga0066709_10339830523300009137Grasslands SoilAAAAEMILEGLHSVDKISRSEERGFAATDRKGSQELYRDYTIERNRYKKPLN*
Ga0066709_10441607323300009137Grasslands SoilAAAAEMILEGLHSVDKISRSEERGFAATDRKGSQELYRDYTMERNRYKKPLN*
Ga0114129_1225665023300009147Populus RhizosphereLHSIDKISRSEDRGFAAPDRRTSQDLYRDYTMERNRNKKPLN*
Ga0105243_1153296713300009148Miscanthus RhizosphereGLYASDKIGRSEERGFIGVERKSQAQELYRDYTIERSRSKKPLN*
Ga0075423_1065096313300009162Populus RhizosphereSPTGYRAAAAEMLLEGLYSMDKITRSEERGFAASERKPSGGQELYRDYTMERNRYKKPLN
Ga0103869_1011123713300009257River WaterVSAGEMILEGLHSIDKLNRSEEKGFTAPEKRVAQELYRDYSAERNRHKKPLN*
Ga0126382_1149991923300010047Tropical Forest SoilAAELILEGLHSIDKISRSEERGFTAIDRKGSQELYRDYTIERNRYKKPLN*
Ga0126373_1266407423300010048Tropical Forest SoilEERGFAASERKVPGAQELYRDYTLERNRYKKPLN*
Ga0127499_121036023300010141Grasslands SoilEGLYSIEKIGRSEERGYTASERKATQELYRDYTVERNRYKKPLN*
Ga0134082_1004872223300010303Grasslands SoilYSIEKISRSEERGYSAIDRKASQELYRDYTMERNRYKKPLN*
Ga0134063_1014658113300010335Grasslands SoilLEGLYSIEKISRSEERGYSAIDRKASQELYRDYTMERNRYKKPLN*
Ga0126370_1118673223300010358Tropical Forest SoilEGLHSIDKISRSEERGFAATERKAAAQDLYRDYTMERNRYKKPLN*
Ga0126372_1102479223300010360Tropical Forest SoilRSEERGFAATERKAAAQDLYRDYTMERNRYKKPLN*
Ga0126377_1166012623300010362Tropical Forest SoilEKISRSEERGFAASERKAAGAQELYRDYTIERNRYKKPLN*
Ga0126379_1356036423300010366Tropical Forest SoilEMVLEGLHSMDKISRSEERGFAASDRKVPGSQELYRDYTMERNRYKKPLN*
Ga0126383_1239865213300010398Tropical Forest SoilEMVLEGLHSMDKISRSEERGFAASDRKVSGSQELYRDYTLERNRYKKPLN*
Ga0105246_1141385313300011119Miscanthus RhizosphereEGLHAIDKIGRSEERGYAAMERKATAEMYRDYTKDLNRYKKPLN*
Ga0150983_1095362823300011120Forest SoilGEMILEGLYSIDKISRSEERGYTAPERKSATQDLYRDYTMERNRYKKPLN*
Ga0150983_1527212823300011120Forest SoilMILEGLYSVEKISRSEERGYAASERKGAAQELYRDYNMERNRYKKPLN*
Ga0137393_1091973423300011271Vadose Zone SoilLYSIDKISRSEERGYTAPERKSASQELYRDYTMERNRYKKPLN*
Ga0134055_135181813300012401Grasslands SoilIRVAAGELILEGLYSIEKISRSEERGYSAIDRKASQELYRDYTMERNRYKKPLN*
Ga0150984_11400507213300012469Avena Fatua RhizosphereDLDKLNRSEERGFSAAERRAPSQELYRDYTIERNRHKKPLN*
Ga0157309_1027616933300012895SoilKVGRSEERGFSAIERKASADMYRDYTKDINRYKKPLN*
Ga0137395_1080989013300012917Vadose Zone SoilLHSIDKVGRSEERGYSAIERKASADMYRDFTKDLNRYKKPLN*
Ga0134075_1058192723300014154Grasslands SoilSGVRAAAAEMILEGLHSVDKISRSEERGFAATDRKGSQELYRDYTMERNRYKKPLN*
Ga0163163_1023868813300014325Switchgrass RhizosphereKVGRTEERGYGAMERKASSDMYRDYTKDMNRYKKPLN*
Ga0163163_1224995823300014325Switchgrass RhizosphereDERGFAATERRAAGSQELYRDYSIERNRYKKPLN*
Ga0180065_116882923300014878SoilAAEMILEGLHSMDKISRSEERGFTAASERKAAGAQELYRDYTMERNRHKKPLN*
Ga0132258_1052824113300015371Arabidopsis RhizosphereAEAEFILEGLYASDKIGRSEERGFVGVERKTPAQELYRDYTIERSRSKKPLN*
Ga0132258_1205167223300015371Arabidopsis RhizosphereVTPDSPVGLRAASGEMILEGLHSIDKISRSEERGFAAPDRRASQDLYRDYTIERNRNKKPLN*
Ga0132256_10205982723300015372Arabidopsis RhizosphereSIDKINRSEERGFTASDRKAAQDLYRDYTVERNRYKKPLN*
Ga0132256_10324894613300015372Arabidopsis RhizosphereEERGFAASDRKAPSSQELYRDYTMERNRYKKPLN*
Ga0132257_10084520023300015373Arabidopsis RhizosphereATAEFILEGLHSLDKIGRSEERGFVANERKQAGQDLYRDYSMERTRYKKPLN*
Ga0132257_10464327623300015373Arabidopsis RhizosphereLEGLHATDKISRSEERGFSASERSKGAGQDLYRDYQMERNRYKKPLN*
Ga0132255_10106404813300015374Arabidopsis RhizospherePDSPVGLRAASGEMILEGLHSIDKISRSEERGFAAPDRRASQDLYRDYTIERNRNKKPLN
Ga0132255_10404072413300015374Arabidopsis RhizosphereEKISRSEERGFAAIDRKGTQELYRDYTMERNRYKKPLN*
Ga0182035_1176707923300016341SoilLHSIDKLSRSEERGFTASERKAAAQELYRDYTMERNRYKKPLN
Ga0134083_1001240733300017659Grasslands SoilSRSEERGYTAAERKATQDLYRDYTIERNRYKKPLN
Ga0184634_1031058713300018031Groundwater SedimentNDSRGLYATDKITRSEERGFCAPERSKGAGQELYRDYQMERNRYKKPLN
Ga0066667_1009153533300018433Grasslands SoilELILEGLYSIEKISRSEERGYAAVDRKATQELYRDYTMERNRYKKPLN
Ga0190271_1346212313300018481SoilAEAEFILEGLYASDKIGRSEERGFVGVDRKPPPQELYRDYTLERSRSKKPLN
Ga0066669_1005055633300018482Grasslands SoilVAAGELILEGLYSIEKISRSEERGYAAVDRKATQELYRDYTMERNRYKKPLN
Ga0210408_1139198123300021178SoilYSVDKISRSEERGYAASERKGAGQELYRDYNMERNRYKKPLN
Ga0247666_107372823300024323SoilGLYSVEKISRSEERGFSATERKAAAQELYRDYTMERNRYKKPLN
Ga0207663_1105877423300025916Corn, Switchgrass And Miscanthus RhizosphereLEGLHSIDKIGRSEERGFAATERKAAAQELYRDYTMERNRYKKPLN
Ga0207659_1077935313300025926Miscanthus RhizosphereQGEFILEGLYASDKIGRSEERGFIGVERKSQAQELYRDYTIERSRSKKPLN
Ga0207701_1045530233300025930Corn, Switchgrass And Miscanthus RhizosphereSIDKVGRSEERGYSGMERKSTPDMYRDYTKDLNRYKKPLN
Ga0207686_1124591113300025934Miscanthus RhizosphereYASDKIGRSEERGFVGIERKSAAQELYRDYTLERGRSKKPLN
Ga0207686_1144355123300025934Miscanthus RhizosphereAEAEFILEGLYASDKIGRSEERGFIGVERKTPTQELYRDYTLERGRSKKPLN
Ga0207677_1116418913300026023Miscanthus RhizosphereYKIGRSEERGFVSIERKAPTQELYRDYTLERSRSKKPLN
Ga0209235_126697913300026296Grasslands SoilYSSCAGLYSIEKISRSEERGYAASERKPAQELYRDYNMERNRYKKPLN
Ga0209236_113067023300026298Grasslands SoilMILEGLYSIEKISRSEERGYAASERKPAQELYRDYNMERNRYKKPLN
Ga0209236_119708013300026298Grasslands SoilGEMILEGLYSIEKISRSEERGYTAADRKATQELYRDYTIERNRYKKPLN
Ga0209814_1036157723300027873Populus RhizosphereVLEGLHSLDKISRSEERGFAASDRKVPGAQELYRDYTLERNRYKKPLN
Ga0209465_1002194113300027874Tropical Forest SoilHAAAGEMVLEGLHSMDKISRSEERGFAASERKVPGAQELYRDYTLERNRYKKPLN
Ga0209486_1050542313300027886Agricultural SoilGRSEERGFVGVERKPQPQDLYRDYTLERSRSKKPLN
Ga0308178_116393313300030990SoilISRSEERGFSASERSKGASQDLYRDYQMERNRYKKPLN
Ga0310813_1067097123300031716SoilSRSEERGFTSSDRKGGGGSQELYRDYTLERNRYKKPLN
Ga0306923_1093651923300031910SoilKISRSEERGFTSAERKGGGSQELYRDYTLERNRYKKPLN
Ga0310913_1035904113300031945SoilISRSEERGYAASERKSSQEMYRDYTIERNRYKKPLN
Ga0310890_1169567413300032075SoilLEGLHSMDKISRSEERGFAASDRKAAATQELYRDYTMEKNRYKKPLN
Ga0306924_1140165013300032076SoilAAAAEMILEGLHSIDKLSRSEERGFSASDRKAAAQELYRDYTMERNRYKKPLN
Ga0306924_1193481923300032076SoilLDKISRSEERGYAASERKSSQEMYRDYTIERNRYKKPLN
Ga0315912_1055232513300032157SoilEGLHAIDKVGRSEERGYAAMERKATSEMYRDYTKDINRYKKPLN
Ga0310889_1010837513300032179SoilAQGEFILEGLYASDKIGRSEERGFIGVERKSQAQELYRDYTIERSRSKKPLN
Ga0306920_10058487113300032261SoilIDKISRSEERGFTSAERKGGGSQELYRDYTLERNRYKKPLN
Ga0326723_0281806_2_1273300034090Peat SoilHSIDKINRSEERGFTASDRKAAQDLYRDYTVERNRYKKPLN


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