Metagenome Family F093915

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093915
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	57 residues
Representative Sequence	MTRTRAGAGTSQGGNNGDLPPPPSPSVNEFFAQFLGSQRTMEETLCLIAQNTAHARQQQ
Number of Associated Samples	65
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.94 %
% of genes near scaffold ends (potentially truncated)	45.28 %
% of genes from short scaffolds (< 2000 bps)	100.00 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (68.868 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere (95.283 % of family members)
Environment Ontology (ENVO)	Unclassified (95.283 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant surface (95.283 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.78% β-sheet: 0.00% Coil/Unstructured: 63.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF03732	Retrotrans_gag	3.77
PF08284	RVP_2	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
All Organisms	root	All Organisms	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
cellular organisms	root	All Organisms → cellular organisms	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
commelinids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Poales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Poaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
PACMAD clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade	31.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Panicoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	30.19 %
Arundinoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Arundinoideae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Andropogonodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae	30.19 %
Arundineae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Arundinoideae → Arundineae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Andropogoneae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae	30.19 %
Arundo	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Arundinoideae → Arundineae → Arundo	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Saccharinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae	30.19 %
Arundo donax	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Arundinoideae → Arundineae → Arundo → Arundo donax	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Saccharum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum	30.19 %
Arundo donax	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Arundinoideae → Arundineae → Arundo → Arundo donax	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Saccharum officinarum complex	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex	30.19 %
Arundo donax	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Arundinoideae → Arundineae → Arundo → Arundo donax	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.87 %
Saccharum spontaneum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	30.19 %
Arundo donax	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Arundinoideae → Arundineae → Arundo → Arundo donax	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005334\|Ga0068869_102092256	Not Available	509	Open in IMG/M
3300005459\|Ga0068867_102286852	Not Available	514	Open in IMG/M
3300006358\|Ga0068871_102403697	Not Available	503	Open in IMG/M
3300009148\|Ga0105243_12975037	Not Available	514	Open in IMG/M
3300013296\|Ga0157374_12344589	Not Available	561	Open in IMG/M
3300015267\|Ga0182122_1023991	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	682	Open in IMG/M
3300015267\|Ga0182122_1031903	Not Available	632	Open in IMG/M
3300015268\|Ga0182154_1054774	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	548	Open in IMG/M
3300015269\|Ga0182113_1060522	Not Available	583	Open in IMG/M
3300015274\|Ga0182188_1017429	Not Available	700	Open in IMG/M
3300015276\|Ga0182170_1057696	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	550	Open in IMG/M
3300015277\|Ga0182128_1005626	Not Available	1043	Open in IMG/M
3300015277\|Ga0182128_1017915	Not Available	762	Open in IMG/M
3300015277\|Ga0182128_1041560	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	607	Open in IMG/M
3300015279\|Ga0182174_1066605	Not Available	544	Open in IMG/M
3300015281\|Ga0182160_1071237	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	528	Open in IMG/M
3300015281\|Ga0182160_1078294	Not Available	513	Open in IMG/M
3300015282\|Ga0182124_1017830	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	770	Open in IMG/M
3300015283\|Ga0182156_1016721	Not Available	808	Open in IMG/M
3300015283\|Ga0182156_1045380	Not Available	612	Open in IMG/M
3300015285\|Ga0182186_1048281	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	591	Open in IMG/M
3300015285\|Ga0182186_1058836	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	558	Open in IMG/M
3300015286\|Ga0182176_1019933	Not Available	794	Open in IMG/M
3300015287\|Ga0182171_1070223	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	540	Open in IMG/M
3300015288\|Ga0182173_1033049	Not Available	663	Open in IMG/M
3300015288\|Ga0182173_1037311	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	641	Open in IMG/M
3300015288\|Ga0182173_1048652	Not Available	596	Open in IMG/M
3300015289\|Ga0182138_1021123	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	757	Open in IMG/M
3300015289\|Ga0182138_1035202	Not Available	659	Open in IMG/M
3300015292\|Ga0182141_1051899	Not Available	601	Open in IMG/M
3300015294\|Ga0182126_1041123	Not Available	646	Open in IMG/M
3300015294\|Ga0182126_1056669	Not Available	590	Open in IMG/M
3300015295\|Ga0182175_1084232	Not Available	528	Open in IMG/M
3300015296\|Ga0182157_1059301	Not Available	596	Open in IMG/M
3300015298\|Ga0182106_1015262	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	881	Open in IMG/M
3300015299\|Ga0182107_1081738	Not Available	543	Open in IMG/M
3300015300\|Ga0182108_1060152	Not Available	601	Open in IMG/M
3300015302\|Ga0182143_1046859	Not Available	641	Open in IMG/M
3300015302\|Ga0182143_1054502	Not Available	614	Open in IMG/M
3300015304\|Ga0182112_1034718	Not Available	700	Open in IMG/M
3300015305\|Ga0182158_1029997	Not Available	726	Open in IMG/M
3300015305\|Ga0182158_1060886	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	593	Open in IMG/M
3300015305\|Ga0182158_1071539	Not Available	565	Open in IMG/M
3300015307\|Ga0182144_1010955	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	975	Open in IMG/M
3300015308\|Ga0182142_1058591	Not Available	620	Open in IMG/M
3300015321\|Ga0182127_1038154	Not Available	725	Open in IMG/M
3300015321\|Ga0182127_1074353	Not Available	594	Open in IMG/M
3300015322\|Ga0182110_1065556	Not Available	615	Open in IMG/M
3300015341\|Ga0182187_1147039	Not Available	563	Open in IMG/M
3300015341\|Ga0182187_1161367	Not Available	545	Open in IMG/M
3300015341\|Ga0182187_1198228	Not Available	504	Open in IMG/M
3300015342\|Ga0182109_1159044	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	573	Open in IMG/M
3300015342\|Ga0182109_1177360	Not Available	549	Open in IMG/M
3300015343\|Ga0182155_1097552	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	682	Open in IMG/M
3300015343\|Ga0182155_1169817	Not Available	559	Open in IMG/M
3300015343\|Ga0182155_1224557	Not Available	502	Open in IMG/M
3300015344\|Ga0182189_1022782	Not Available	1129	Open in IMG/M
3300015344\|Ga0182189_1107457	Not Available	667	Open in IMG/M
3300015344\|Ga0182189_1125375	Not Available	632	Open in IMG/M
3300015344\|Ga0182189_1177274	Not Available	555	Open in IMG/M
3300015345\|Ga0182111_1076197	Not Available	782	Open in IMG/M
3300015345\|Ga0182111_1130966	Not Available	641	Open in IMG/M
3300015345\|Ga0182111_1165312	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	586	Open in IMG/M
3300015346\|Ga0182139_1141620	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	622	Open in IMG/M
3300015346\|Ga0182139_1175094	Not Available	574	Open in IMG/M
3300015347\|Ga0182177_1075854	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	787	Open in IMG/M
3300015347\|Ga0182177_1164568	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	590	Open in IMG/M
3300015347\|Ga0182177_1183094	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	567	Open in IMG/M
3300015347\|Ga0182177_1203734	Not Available	544	Open in IMG/M
3300015347\|Ga0182177_1220340	Not Available	527	Open in IMG/M
3300015351\|Ga0182161_1122817	Not Available	684	Open in IMG/M
3300015351\|Ga0182161_1216965	Not Available	547	Open in IMG/M
3300015361\|Ga0182145_1178005	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	518	Open in IMG/M
3300015361\|Ga0182145_1196729	Not Available	500	Open in IMG/M
3300017404\|Ga0182203_1082377	Not Available	629	Open in IMG/M
3300017407\|Ga0182220_1032561	Not Available	701	Open in IMG/M
3300017409\|Ga0182204_1067995	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	598	Open in IMG/M
3300017409\|Ga0182204_1101694	Not Available	529	Open in IMG/M
3300017410\|Ga0182207_1110433	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	590	Open in IMG/M
3300017410\|Ga0182207_1163381	Not Available	516	Open in IMG/M
3300017410\|Ga0182207_1176917	Not Available	501	Open in IMG/M
3300017411\|Ga0182208_1066948	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	619	Open in IMG/M
3300017413\|Ga0182222_1026866	Not Available	720	Open in IMG/M
3300017413\|Ga0182222_1070836	Not Available	562	Open in IMG/M
3300017413\|Ga0182222_1085853	Not Available	534	Open in IMG/M
3300017415\|Ga0182202_1062027	Not Available	652	Open in IMG/M
3300017417\|Ga0182230_1093881	Not Available	551	Open in IMG/M
3300017420\|Ga0182228_1099493	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	553	Open in IMG/M
3300017424\|Ga0182219_1066597	Not Available	634	Open in IMG/M
3300017433\|Ga0182206_1117250	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	555	Open in IMG/M
3300017433\|Ga0182206_1134333	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	531	Open in IMG/M
3300017436\|Ga0182209_1107235	Not Available	589	Open in IMG/M
3300017438\|Ga0182191_1139630	Not Available	552	Open in IMG/M
3300017438\|Ga0182191_1141428	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	549	Open in IMG/M
3300017442\|Ga0182221_1122662	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	558	Open in IMG/M
3300017442\|Ga0182221_1170607	Not Available	502	Open in IMG/M
3300017443\|Ga0182193_1098167	Not Available	640	Open in IMG/M
3300017443\|Ga0182193_1129426	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	583	Open in IMG/M
3300017443\|Ga0182193_1134893	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Saccharinae → Saccharum → Saccharum officinarum complex → Saccharum spontaneum	574	Open in IMG/M
3300017681\|Ga0182226_1100817	Not Available	545	Open in IMG/M
3300017683\|Ga0182218_1043831	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Arundinoideae → Arundineae → Arundo → Arundo donax	737	Open in IMG/M
3300017684\|Ga0182225_1114675	Not Available	541	Open in IMG/M
3300017685\|Ga0182227_1063766	Not Available	672	Open in IMG/M
3300017686\|Ga0182205_1056424	Not Available	728	Open in IMG/M
3300017689\|Ga0182231_1109598	Not Available	536	Open in IMG/M
3300017690\|Ga0182223_1125106	Not Available	501	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Phyllosphere	Host-Associated → Plants → Phyllosphere	95.28%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.89%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	95.28%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	95.28%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Miscanthus Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere	95.28%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015267	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015268	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015269	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015274	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015276	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015277	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015279	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015281	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015282	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015283	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015285	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015286	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015287	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015288	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015289	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015292	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015294	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015295	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015296	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015298	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015299	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015300	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015302	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015304	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015305	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015307	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015308	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015321	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015322	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015341	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015342	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015343	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015344	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015345	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015346	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015347	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015351	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015361	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300017404	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017407	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017409	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017410	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017411	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017413	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017415	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017417	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_07NOV2016_LD1 MG	Host-Associated	Open in IMG/M
3300017420	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_07NOV2016_LD1 MG	Host-Associated	Open in IMG/M
3300017424	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017433	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017436	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017438	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017442	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017443	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017681	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_07NOV2016_LD1 MG	Host-Associated	Open in IMG/M
3300017683	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017684	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017685	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_07NOV2016_LD1 MG	Host-Associated	Open in IMG/M
3300017686	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017689	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_07NOV2016_LD1 MG	Host-Associated	Open in IMG/M
3300017690	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0068869_1020922561	3300005334	Miscanthus Rhizosphere	MTRTHAGAGTSQGGNDGDLPPPLSPYVNEFFAQFLGSQRIMEDTLCLIVQNTAHAH*
Ga0068867_1022868521	3300005459	Miscanthus Rhizosphere	MTRTHAGAGTSQGGNDGDLPPPPSPSMNEFFAQFLGNQRALEDTLRLITQNTAHTH
Ga0068871_1024036971	3300006358	Miscanthus Rhizosphere	MTRTRAGAGGSQDGNNDDLPPRPPPSAQEFFTQFLGSQRTMEEALRLIA
Ga0105243_129750371	3300009148	Miscanthus Rhizosphere	MTRTHAEASNSQGGNDGDLPPLPPPSANEFFTQFLGGQRTMEETLRLIMQNIVL*PPKNC
Ga0157374_123445891	3300013296	Miscanthus Rhizosphere	MTCTYAGASSSQEGNDGDLPPLPPMSANEFFAQFLGSQRTMEEALRLIAQNTARAR*
Ga0182122_10239911	3300015267	Miscanthus Phyllosphere	MTRTHAGAGTSQGGNDGDLPPPPSPSTNEFFAQFLGSQRIMEETLRLITQNTARTRQQQ*
Ga0182122_10319032	3300015267	Miscanthus Phyllosphere	MTCTRAGAGSSHDGNGDDLPPLPPPSAQEFFAQFLGSQRTMEEALRLIAQ
Ga0182154_10547741	3300015268	Miscanthus Phyllosphere	ILQMTRTRTGANTSQGGNDDDLPPLPPPSANEFFAQFLGNQRAMEETLCHIAQNMAHAR*
Ga0182113_10605221	3300015269	Miscanthus Phyllosphere	MSRTHAGAGTSQGGNDGDLPPPPSPSANEFFAQFLGNQRAMEETLHLIV*
Ga0182188_10174292	3300015274	Miscanthus Phyllosphere	MTHTRAGAGTSQGGNDGDLPPPPSPSVNEFFAQFLGNQRAMEETLRLFAQNTA
Ga0182170_10576961	3300015276	Miscanthus Phyllosphere	MTHTHAGAGNGQGGNDGDLPPPPSPSMNEFFAQFLGSKRTMEETLRLIA*
Ga0182128_10056262	3300015277	Miscanthus Phyllosphere	MTRTRARASSSQEGNDNDLPQLPPPSANEFFAQFLGSQRTMEETLR
Ga0182128_10179151	3300015277	Miscanthus Phyllosphere	MTRTRAGANNGQGGNDGDLPSPSANEFFAQFLGSQRTMEETLRLIAQNTAHACQQHQGLEPN*
Ga0182128_10415602	3300015277	Miscanthus Phyllosphere	MTHTRARAGSSQEGNDGDLLPPPPPSANEFFAQFLGSQRTMEETLRLIVQNMARAR*
Ga0182174_10666051	3300015279	Miscanthus Phyllosphere	MTRTRAGAGSSQEGNDGDLPPSLPPSANEFFAQFLGSQRTMEETLRLIAQNTTRTHQQQ*
Ga0182160_10712371	3300015281	Miscanthus Phyllosphere	SWVGTSQGGNDGDLPPPPSLYTNEFFTQFLGNQRAMEETLRLIAQNTAQTCQQH*
Ga0182160_10782941	3300015281	Miscanthus Phyllosphere	MPRTHTGASTSQNGGDDGDLPRPPPPSTNEFFMQFLGNQRAMEETLRLIVQNTARARQQNQGPKPN*
Ga0182124_10178301	3300015282	Miscanthus Phyllosphere	MTRTRAGAGTSQSGNDGDLPPPPQPSANEFFAQFLGKQRAMEEILCLIVQNTAHAR*
Ga0182156_10167212	3300015283	Miscanthus Phyllosphere	MDHTRVGVGTSQGGNNGDLPPPPSPSMNEFFAQFLGSKRTMEETLRLIA*
Ga0182156_10453802	3300015283	Miscanthus Phyllosphere	MTRTHGGAGNSQGGNDGDLPPPPPLSLNEFFAQLLGSQRIMEETLRLIAQNTARTHQQQ*
Ga0182186_10482812	3300015285	Miscanthus Phyllosphere	SHTAGANTSQNGGDDGDLPPPTPPSTNKFFAQFLGNQRAMEETLCLIAQNNAHAC*
Ga0182186_10588362	3300015285	Miscanthus Phyllosphere	MTHTRARVGTSQGGNDGDLPPRPSPSANEFFAQFLGNQRAMEDTLRLVAQNTAHAR*
Ga0182176_10199332	3300015286	Miscanthus Phyllosphere	MTCTCAGARSSQEGNDGDLPPPPSANEFFAQFLGSQTTMEETLRLIAQNTAHARQQQ*
Ga0182171_10702231	3300015287	Miscanthus Phyllosphere	MTRTGAGAGSSQEGNDGDLSPPPPPSSNEFFAQFLGSQRTMEETLHLIVQNTARTRQQQPGPEPN*
Ga0182173_10330491	3300015288	Miscanthus Phyllosphere	MTRTRARVGSSQEGNDGDLPPPPPLSANEFFAQFLGSQSTMESTLRLIAQNTARARQ*
Ga0182173_10373111	3300015288	Miscanthus Phyllosphere	MTRTHARAGSSQEGNDGDLPPPPPSFANEFFAQFLGSQRTMEETLRLIA*
Ga0182173_10486521	3300015288	Miscanthus Phyllosphere	MTHTSARVGTSQGGNDGDLPPPPSPSVNEFFAQGAMEDTLRLIAQNTAHAHPQ
Ga0182138_10211232	3300015289	Miscanthus Phyllosphere	RTRTGAGTSQGGNDVDLPPSSPPSVNEFFTQFLGSQRTMEETLHVIAQNTARARQ*
Ga0182138_10352021	3300015289	Miscanthus Phyllosphere	MTRPRAGAGSNQEGNDNDLPPPSANEFFAQFLGSQRTMEETLRLIA*
Ga0182141_10518992	3300015292	Miscanthus Phyllosphere	MTRTHARAGNSQEGNNDDLPPPPSPCANEFFAQFLGSQRTMEETMCLIAQNMAHARQQQ*
Ga0182126_10411231	3300015294	Miscanthus Phyllosphere	MTRNRAGASSSQEGNDGDLPPLPPPSANEFFTQFLGGQRTMEETLRLIMQNIA
Ga0182126_10566691	3300015294	Miscanthus Phyllosphere	MTRTRAGVSTSQGGNDGDLPPPPSPSMNEFFVQFLGNQRAIEDTLCLIAQNTAHAHHQHQ
Ga0182175_10842321	3300015295	Miscanthus Phyllosphere	MTRTHAGAVNSQGGNDGDLPPPQPPYANEFFAQFLGSQRTMEETLCLIAQNTARAHQQQ*
Ga0182157_10593011	3300015296	Miscanthus Phyllosphere	VAILQMTHTCAGAGTSQGLNDGELPPPPTPSANEFFAQFLGNQRAMEDTLRLVAQNTAHAR*
Ga0182106_10152621	3300015298	Miscanthus Phyllosphere	MTRTWARAGSSQEGNDGDLPPPSANEFFAQFLGSQRTMEEALRLITQYMAHAHPQQQGLSQTSTAPSRIF*
Ga0182107_10817381	3300015299	Miscanthus Phyllosphere	MTCTRAGAVASQGGNDADLPTTPPPSMNEFFAQFLGNQRAMEETL
Ga0182108_10601521	3300015300	Miscanthus Phyllosphere	MTRTRTGAGNNQGGNDGDLPPPPSPSMNKFFAQLLGSQRTIEETLCLIMQNTTHAHQQQ*
Ga0182143_10468591	3300015302	Miscanthus Phyllosphere	MTRTHTKAGNSQGGNDNDLPPSPPPSMNEFFAQFLGSQRTMEETLRLIPQNIAHARQQHHGPEPN*
Ga0182143_10545021	3300015302	Miscanthus Phyllosphere	MTRTHIGAGNSQGGNDGDLSPPPPPSVNEFFTQFLGSQRTMEESLCLIAQNIARARQQQ*
Ga0182112_10347181	3300015304	Miscanthus Phyllosphere	MTRTRAGAGSSQEGNDGDLPLPPPSSANEFFAQFLGSQRTMEETLRLIA*
Ga0182158_10299971	3300015305	Miscanthus Phyllosphere	MTRTHAGAGSSQEGNDGDLPPLPPPSANEFFAQFLGSHRTMEETLHLIAQNTARAR*
Ga0182158_10608861	3300015305	Miscanthus Phyllosphere	MTRTRVGAGNNQDGNDGDLPPPPSPFVNEFFAQFLGSERTMEEALCLIVHTTAHARQQQ*
Ga0182158_10715392	3300015305	Miscanthus Phyllosphere	MTHTHASAGTSQGGNDCDLPPPWSTSANEFFAQFLGNQRAMEDTLCLIAQNTAHACQQHQGPKPN*
Ga0182144_10109552	3300015307	Miscanthus Phyllosphere	MTRTRVEAGSSQEGNDGDLPPPPPSSANEFFAQFLGSQRTMEETLRLIV*
Ga0182142_10585911	3300015308	Miscanthus Phyllosphere	MTRTRAGAGTSQGGNDGDQPPPPPLSTNEFFAQFLGNQRAMEETPCLIAQNTTRAYQQN*
Ga0182127_10381542	3300015321	Miscanthus Phyllosphere	MTHTHAGAGSSQEGNDGDLPPPSVNEFFAQFLGSQRTMEETLRLIVQNTARDRQQQ*
Ga0182127_10743531	3300015321	Miscanthus Phyllosphere	MTCTRVGVGSSQEGNDGDLPPPPPLSANEFFTQFLGSQRTMEETLRLIA
Ga0182110_10655561	3300015322	Miscanthus Phyllosphere	MTRTRAGAGNNQGGNDSDLPTPPSPSANEFFAQFLGSQRTMEETLRLITQNTAHARQQQ*
Ga0182187_11470391	3300015341	Miscanthus Phyllosphere	LIVATLQMTRTRAEAGSSQEGNYDDLSPPPPPSTNEFFAQFLGSQRTVEETLCLIGQNMARAR*
Ga0182187_11613671	3300015341	Miscanthus Phyllosphere	MSHTRTGAGTSQGGNDGDLPPPSPPTANEFFAQFLGNQRAMEETLRHIAQNMARARQKNQGSEPNQY
Ga0182187_11982281	3300015341	Miscanthus Phyllosphere	MTCTYTGAGTSQGGNDGDLPPPPSPSANESFAQFLGNQQAMEDTLCLIAQNTMHARQQNQGPEPNQ
Ga0182109_11590441	3300015342	Miscanthus Phyllosphere	MTRTRVGAGTSQDGNDGDLPPPPSPSVNEFFAQFLGNQRAMEETLCLIVQNTAHAR*
Ga0182109_11773601	3300015342	Miscanthus Phyllosphere	MTHTYAGVGTRQGGNDGDLPPRPSPSANEFFAQFLGNQRAMEDTLRLI
Ga0182155_10975522	3300015343	Miscanthus Phyllosphere	MTRTRTGADTSQGGNDDDLPPLPPPTANEFFAQFLGNQRAMEETLRHIAQNMAHAR*
Ga0182155_11698172	3300015343	Miscanthus Phyllosphere	MTHTRAGAGSSQQGNDGDLPPQPPPFANEFFAQFLGSQITMEETLRLI
Ga0182155_12245571	3300015343	Miscanthus Phyllosphere	MTRTCAGVGNNQGGNDGDLPPPPSPSMNKFFTQFLGSQRTMEETLCLIAQNIAHANQQQQGLEPNQ
Ga0182189_10227823	3300015344	Miscanthus Phyllosphere	MTRTHAGVDTNQGGNDGDLPPPPSPSTNEFFTKFLGNQRAMEDTLCLIAQNTAHA
Ga0182189_11074571	3300015344	Miscanthus Phyllosphere	MTRTHGGAGNSQGGNDGDLPPPPPLSLNEFFAQLLGSQRIMEETLRLIAQNTTRTHQQQ*
Ga0182189_11253751	3300015344	Miscanthus Phyllosphere	MTRTCIGAGTSQGGNDDDITAPPPPSANEFFVQFLGNQRAMEETLRLIAHNMV*ACQQN
Ga0182189_11772741	3300015344	Miscanthus Phyllosphere	MTRTHTEAGSSQEGNDGDLPPPPPLSAQEFFAQFLGSQRTMEEALRLIA*
Ga0182111_10761972	3300015345	Miscanthus Phyllosphere	MTRTRAGAGTSQSGNDGDLPPPPQPSANEFFAQFLGKQRAMEEILCLIVQN
Ga0182111_11309661	3300015345	Miscanthus Phyllosphere	MTRTRAREGSSQEGNDGDLPPLPPPTNEFFAQFLGSQRAMEETLCIIAQNMARARQQQQGPE
Ga0182111_11653121	3300015345	Miscanthus Phyllosphere	MTRTHAGAGTSQGGNDGDLSPPPPPFMNEFFMQFLGNQRTMEETLCLIAHNTARACQQN*
Ga0182139_11416201	3300015346	Miscanthus Phyllosphere	SSSQEGNDGDLPPPPPLSAHEFFAQFLGSQRTMEKILRLITQNMAHASQQQQGPKLN*
Ga0182139_11750941	3300015346	Miscanthus Phyllosphere	MTHTRAGAGSSQEGNDGDLPPSPPPSVNELFAQFLGSQRTMGETLNLIVEHGSRPSAATRA*
Ga0182177_10758541	3300015347	Miscanthus Phyllosphere	MTRTHAGAGSNQEGNDGDLPPPPPTSANEFFAQFLGSQRTMEETLRLIA*
Ga0182177_11645681	3300015347	Miscanthus Phyllosphere	MTRTRAGAGSSQEGNDGDLPPSPPPSANEFFAQFLGSWRTMEETLHLIAQNMAHARQQQ*
Ga0182177_11830941	3300015347	Miscanthus Phyllosphere	MTCTRAGAGNNQEGNNGDLPPPPPLSAIEFFAQFLVSQRTMEETLRLIAQNTARARQQK*
Ga0182177_12037341	3300015347	Miscanthus Phyllosphere	MTRTHVRIGSSQEGNDGDLPPPSPPSMNEFFAQLLGSQRTMEETLCLIAQNMARAPQQQ*
Ga0182177_12203401	3300015347	Miscanthus Phyllosphere	MTRTCARAGTSQGGNDGDLPPPLSPSANEFFAQFLENHRAMEETLRLIAQNTAHGHQQHHGPEPN*
Ga0182161_11228172	3300015351	Miscanthus Phyllosphere	MTRTRAGANCSQEGNDGDLPQPPPPSANKFFAQFLGSQRTMEETLCLIAQNTARAHQQ
Ga0182161_12169651	3300015351	Miscanthus Phyllosphere	MTHTRVRAGISQGGNDGDLPPPPSLSMNEFFAQFLGNQRAMEDTLHLIAQNTA
Ga0182145_11780052	3300015361	Miscanthus Phyllosphere	MTRTRVEAGSSQEGNDGDLPPPPPSSANEFFAQFLGSQRTMEETLRLIALNMARARQQQ*
Ga0182145_11967292	3300015361	Miscanthus Phyllosphere	LQMTRTRARAGTSQGGIDGDLPPPLSPSMNEFFAQFLGNQSAMEETLRLIAQNTA*
Ga0182203_10823772	3300017404	Miscanthus Phyllosphere	MTRTRTGAGTSQGGNDDDLPPLPPPTANEFFAQFLGNQRAMEETLRHIAQNMA
Ga0182220_10325611	3300017407	Miscanthus Phyllosphere	MTRTRAGAGTSQGGNDDDLPPSSANEFFAQFLGSQRTMEVTLRLIVQNTAHARQQQ
Ga0182204_10679951	3300017409	Miscanthus Phyllosphere	ISQESLIVAILQMTRTHAGVGSNQGGIDGDLPPPSPPSANEFFTQFLGNQRAMEQTLRLIAQNTARAR
Ga0182204_11016941	3300017409	Miscanthus Phyllosphere	IVATLQMTHTHAGAGSSQEGNDGDLPAPPPPFANEFVAQFLGSQRTMEETLCLIAQNTARARQQQQGPIPN
Ga0182207_11104331	3300017410	Miscanthus Phyllosphere	MIAILQMTHTHARAGTSQGGNDGDLPPPPSPSTNEFFTQFLGNQRAMEDTLRLIA
Ga0182207_11633811	3300017410	Miscanthus Phyllosphere	MTRTRAGAGGSQDGNNDDLPPPPPSAQEFFTQFLGCQRTMEEALRLIA
Ga0182207_11769171	3300017410	Miscanthus Phyllosphere	MTRTRATAGTSQGGNDGDLPPLSSPSMNEFFAQFLGNQRAMENTLCLIAQ
Ga0182208_10669481	3300017411	Miscanthus Phyllosphere	MTHTYARVGTSQGGNDGDLPQPSSPSANEFFAQFLGNQXAMEETMRHIAQNMACARQ
Ga0182222_10268661	3300017413	Miscanthus Phyllosphere	IVAILQMTHTRARAGTSQGGNDGDLPPPPSSSANEFFTQFLGNQRAMEDTLRLIA
Ga0182222_10708361	3300017413	Miscanthus Phyllosphere	MVTILQMTRTCARVGTSQGGNDGDLATPQSPSANEFFAQFLGNQRAMEDTLCLIAQNTTH
Ga0182222_10858531	3300017413	Miscanthus Phyllosphere	LQMTRTRAGAGTSQSGNDGDLPPPPQPSANEFFAQFLGKQRAMEEILCLIVQNTTHAHLQ
Ga0182202_10620271	3300017415	Miscanthus Phyllosphere	MTHTRTRAGNSQGGNNGDLPPPPSPSMNEFFAQFLGSQRTMEETLRLIA
Ga0182230_10938811	3300017417	Miscanthus Phyllosphere	MTRTHIGAGNSQGGNDGDLSPPPPPSVNEFFTQFLGSQRTMEETLRLIAQNTTHARQQQQGLE
Ga0182228_10994931	3300017420	Miscanthus Phyllosphere	MTRICAGEGTSQGGNDGDLPPPPSPSVNEFFAQFLENQRAMEETLRLIAQNTAHAR
Ga0182219_10665971	3300017424	Miscanthus Phyllosphere	MTRTHAGAGNSQEGNDGDLPPLPPPSANEFFAQFLGSHRTMEETLHLIAQNTARAR
Ga0182206_11172501	3300017433	Miscanthus Phyllosphere	HARAGTSQGGNDGDLPPPPSPSMNEFFAQFLGNQRAMEDTLNLIA
Ga0182206_11343332	3300017433	Miscanthus Phyllosphere	MTRTRAEAGNSQEGNDGDLPPPPPASANEFFTQFLGSQRTMEETLRLITQNTAHACQQQ
Ga0182209_11072351	3300017436	Miscanthus Phyllosphere	MTHTRAGEGSSQEGNDGDLPPPSANEFFAQFLGSQRTMEETLCLIAQNSAQARQQHQGPEPN
Ga0182191_11396301	3300017438	Miscanthus Phyllosphere	MTRTCAGAGSSQEGNDGDLPPPPLPSVNEFFAQFLGSQRTMEETLRLIAQNTAHARQQQQGPEPNQYSSFK
Ga0182191_11414281	3300017438	Miscanthus Phyllosphere	MTRTRAGAGSSQEGNDSDLPPPSANEFFAQFLGSQRTMEETLRLITQTTARALQ
Ga0182221_11226621	3300017442	Miscanthus Phyllosphere	MTRTHVGAGNNQEGNDGDLPPPSSKSMNEFFAQFLGSQRIMEETLHLIA
Ga0182221_11706071	3300017442	Miscanthus Phyllosphere	MTRTRAGAGTSQGGNNGDLPPPPSPSVNEFFAQFLGSQRTMEETLCLIEQNTAHARQQQ
Ga0182193_10981672	3300017443	Miscanthus Phyllosphere	MTCTHAGAGNSQEDNDGDLSPPPPPSANEFFAQFLRSQRTMEETLRLIAQNTARAHQQQQGPEPN
Ga0182193_11294261	3300017443	Miscanthus Phyllosphere	MTHTHAGVGTSQGGKNGDLPPPPSPSMNVFFAKFLGNYRAMEETLRLIAQNIAHTHQQHQGLEPNQYSSFKDL
Ga0182193_11348931	3300017443	Miscanthus Phyllosphere	ATLQMTRTHAGAGSSQEGNDGDLPPPPQPSANEFFAQFLGSQRTMEETLRLIAQNTARARQQQQGPEPN
Ga0182226_11008171	3300017681	Miscanthus Phyllosphere	MTRTRAGAGTSQGGNDGDLPPPPSPSTNEFFAQFLGNERAMEDTLCLIAQNTAR
Ga0182218_10438312	3300017683	Miscanthus Phyllosphere	VAILQMTHTRAGAGTGQGGNDGDLPPPPSPSANEFFAQFLGNQRAMEETLRLIASSSSI
Ga0182225_11146751	3300017684	Miscanthus Phyllosphere	ILRMTRTRAGAGTSQGGNDGDLPPSPSPSTNEFFAQLLGNQRAMEDTLHLIA
Ga0182227_10637662	3300017685	Miscanthus Phyllosphere	MVAILQMTHTCAGAGTSQDGNDGDLPPPPSPSTNEFFTKFLGNQRHMEDTLCLIAQNT
Ga0182205_10564242	3300017686	Miscanthus Phyllosphere	MTRTRAGAGTSQGGNNGDLPPPPSPSVNEFFAQFLGSQRTMEETLCLIAQNTAHARQQQ
Ga0182231_11095981	3300017689	Miscanthus Phyllosphere	MTHTHARAGSSQEGNDGDLPSSPPPFANEFFAQFLGSQRTMEETLRLIAQNTAHARQQQ
Ga0182223_11251061	3300017690	Miscanthus Phyllosphere	TRTHAGAGSNQEGNDGDLPPPPPTSANEFFAQFLGSQRTMEETLRLIAQNTARARQQQQGPEPN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093915

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences