Metagenome / Metatranscriptome Family F093902

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093902
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	47 residues
Representative Sequence	VSLSPDFSKKDINKNIDRLINEGYEVARKASDGDSWESVISLLDEF
Number of Associated Samples	50
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.06 %
% of genes from short scaffolds (< 2000 bps)	91.51 %
Associated GOLD sequencing projects	34
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (76.415 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (98.113 % of family members)
Environment Ontology (ENVO)	Unclassified (98.113 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.24% β-sheet: 0.00% Coil/Unstructured: 56.76%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF08241	Methyltransf_11	4.72
PF07103	DUF1365	3.77
PF01755	Glyco_transf_25	2.83
PF01370	Epimerase	2.83
PF03567	Sulfotransfer_2	2.83
PF13578	Methyltransf_24	1.89
PF16861	Carbam_trans_C	0.94
PF02543	Carbam_trans_N	0.94
PF00685	Sulfotransfer_1	0.94
PF01041	DegT_DnrJ_EryC1	0.94
PF02350	Epimerase_2	0.94
PF09334	tRNA-synt_1g	0.94
PF14063	DUF4254	0.94
PF08811	DUF1800	0.94
PF13692	Glyco_trans_1_4	0.94
PF00589	Phage_integrase	0.94
PF01593	Amino_oxidase	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG3496	Uncharacterized conserved protein, DUF1365 family	Function unknown [S]	3.77
COG3306	Glycosyltransferase involved in LPS biosynthesis, GR25 family	Cell wall/membrane/envelope biogenesis [M]	2.83
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.94
COG5267	Uncharacterized conserved protein, DUF1800 family	Function unknown [S]	0.94
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.94
COG2192	Predicted carbamoyl transferase, NodU family	General function prediction only [R]	0.94
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.94
COG0707	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	Cell wall/membrane/envelope biogenesis [M]	0.94
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.94
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.94
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.94
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.94
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.94
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.94
COG0381	UDP-N-acetylglucosamine 2-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.94
COG0215	Cysteinyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.94
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.94
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
All Organisms	root	All Organisms	23.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
cellular organisms	root	All Organisms → cellular organisms	23.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.21 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.83 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.83 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.89 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.94 %
unclassified Spirochaetota	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.83 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.89 %
Spirochaetales	order	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales	0.94 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.83 %
Methylophilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae	1.89 %
unclassified Spirochaetales	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales	0.94 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.83 %
Candidatus Methylopumilus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Candidatus Methylopumilus	1.89 %
Spirochaetales bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium	0.94 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.42 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.83 %
Candidatus Methylopumilus universalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Candidatus Methylopumilus → Candidatus Methylopumilus universalis	1.89 %
Spirochaetales bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium	0.94 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300006404\|Ga0075515_10928503	Not Available	580	Open in IMG/M
3300012967\|Ga0129343_1324054	Not Available	547	Open in IMG/M
3300016729\|Ga0182056_1241766	Not Available	668	Open in IMG/M
3300016732\|Ga0182057_1040874	Not Available	576	Open in IMG/M
3300016732\|Ga0182057_1078571	Not Available	530	Open in IMG/M
3300016732\|Ga0182057_1361087	Not Available	527	Open in IMG/M
3300016754\|Ga0182072_1133950	Not Available	546	Open in IMG/M
3300016762\|Ga0182084_1060317	Not Available	505	Open in IMG/M
3300016781\|Ga0182063_1116426	Not Available	520	Open in IMG/M
3300016787\|Ga0182080_1784785	Not Available	778	Open in IMG/M
3300017818\|Ga0181565_10194536	Not Available	1397	Open in IMG/M
3300017818\|Ga0181565_10355145	Not Available	975	Open in IMG/M
3300017818\|Ga0181565_10679304	Not Available	655	Open in IMG/M
3300017818\|Ga0181565_10944597	Not Available	536	Open in IMG/M
3300017949\|Ga0181584_10712429	Not Available	599	Open in IMG/M
3300017951\|Ga0181577_10778144	Not Available	578	Open in IMG/M
3300017952\|Ga0181583_10139799	Not Available	1626	Open in IMG/M
3300017952\|Ga0181583_10159223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1504	Open in IMG/M
3300017952\|Ga0181583_10507341	Not Available	737	Open in IMG/M
3300017956\|Ga0181580_10236009	All Organisms → cellular organisms → Bacteria → Proteobacteria	1268	Open in IMG/M
3300017956\|Ga0181580_10549860	Not Available	749	Open in IMG/M
3300017956\|Ga0181580_10568064	Not Available	734	Open in IMG/M
3300017956\|Ga0181580_10643087	Not Available	679	Open in IMG/M
3300017957\|Ga0181571_10802605	Not Available	558	Open in IMG/M
3300017958\|Ga0181582_10517031	Not Available	741	Open in IMG/M
3300017962\|Ga0181581_10085311	All Organisms → cellular organisms → Bacteria → Proteobacteria	2191	Open in IMG/M
3300017962\|Ga0181581_10202510	All Organisms → cellular organisms → Bacteria → Proteobacteria	1312	Open in IMG/M
3300017962\|Ga0181581_10265321	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300017964\|Ga0181589_10225545	Not Available	1293	Open in IMG/M
3300017964\|Ga0181589_10290816	Not Available	1104	Open in IMG/M
3300017964\|Ga0181589_10929817	Not Available	532	Open in IMG/M
3300017964\|Ga0181589_10970676	Not Available	517	Open in IMG/M
3300017967\|Ga0181590_10571842	Not Available	777	Open in IMG/M
3300017968\|Ga0181587_10818002	Not Available	581	Open in IMG/M
3300017985\|Ga0181576_10125681	All Organisms → cellular organisms → Bacteria	1714	Open in IMG/M
3300017985\|Ga0181576_10455696	Not Available	791	Open in IMG/M
3300017985\|Ga0181576_10751325	Not Available	579	Open in IMG/M
3300017986\|Ga0181569_11068559	Not Available	518	Open in IMG/M
3300018049\|Ga0181572_10140946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Candidatus Methylopumilus → Candidatus Methylopumilus universalis	1582	Open in IMG/M
3300018049\|Ga0181572_10141106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Candidatus Methylopumilus → Candidatus Methylopumilus universalis	1581	Open in IMG/M
3300018049\|Ga0181572_10506885	Not Available	742	Open in IMG/M
3300018049\|Ga0181572_10516840	Not Available	733	Open in IMG/M
3300018049\|Ga0181572_10663937	Not Available	629	Open in IMG/M
3300018415\|Ga0181559_10658865	Not Available	563	Open in IMG/M
3300018418\|Ga0181567_10067683	Not Available	2496	Open in IMG/M
3300018418\|Ga0181567_10379723	Not Available	938	Open in IMG/M
3300018418\|Ga0181567_10585079	Not Available	722	Open in IMG/M
3300018418\|Ga0181567_10871699	Not Available	567	Open in IMG/M
3300018421\|Ga0181592_10264421	All Organisms → cellular organisms → Bacteria → Proteobacteria	1257	Open in IMG/M
3300018423\|Ga0181593_10690412	Not Available	724	Open in IMG/M
3300018424\|Ga0181591_10144840	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1907	Open in IMG/M
3300018424\|Ga0181591_10312537	Not Available	1195	Open in IMG/M
3300018424\|Ga0181591_10643745	Not Available	753	Open in IMG/M
3300018426\|Ga0181566_10130339	All Organisms → cellular organisms → Bacteria	1900	Open in IMG/M
3300018426\|Ga0181566_10175683	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1597	Open in IMG/M
3300018426\|Ga0181566_10491681	Not Available	863	Open in IMG/M
3300018426\|Ga0181566_10499500	All Organisms → cellular organisms → Bacteria → Proteobacteria	855	Open in IMG/M
3300018426\|Ga0181566_11124704	Not Available	525	Open in IMG/M
3300018428\|Ga0181568_10521847	Not Available	944	Open in IMG/M
3300018428\|Ga0181568_10567389	All Organisms → cellular organisms → Bacteria → Proteobacteria	898	Open in IMG/M
3300019253\|Ga0182064_1093065	Not Available	593	Open in IMG/M
3300019261\|Ga0182097_1452566	Not Available	513	Open in IMG/M
3300019276\|Ga0182067_1296157	Not Available	565	Open in IMG/M
3300019276\|Ga0182067_1591359	Not Available	621	Open in IMG/M
3300019276\|Ga0182067_1677012	Not Available	604	Open in IMG/M
3300020056\|Ga0181574_10641157	Not Available	567	Open in IMG/M
3300020207\|Ga0181570_10336141	Not Available	744	Open in IMG/M
3300020207\|Ga0181570_10576673	Not Available	502	Open in IMG/M
3300022939\|Ga0255754_10428453	Not Available	584	Open in IMG/M
3300023081\|Ga0255764_10038177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3051	Open in IMG/M
3300023081\|Ga0255764_10254468	Not Available	831	Open in IMG/M
3300023084\|Ga0255778_10043745	Not Available	2879	Open in IMG/M
3300023084\|Ga0255778_10305440	Not Available	728	Open in IMG/M
3300023087\|Ga0255774_10361107	Not Available	669	Open in IMG/M
3300023087\|Ga0255774_10412172	Not Available	604	Open in IMG/M
3300023105\|Ga0255782_10066205	Not Available	1975	Open in IMG/M
3300023105\|Ga0255782_10079959	All Organisms → cellular organisms → Bacteria → Proteobacteria	1765	Open in IMG/M
3300023105\|Ga0255782_10116333	Not Available	1402	Open in IMG/M
3300023108\|Ga0255784_10310492	Not Available	781	Open in IMG/M
3300023108\|Ga0255784_10543626	Not Available	520	Open in IMG/M
3300023110\|Ga0255743_10040257	All Organisms → cellular organisms → Bacteria	3004	Open in IMG/M
3300023110\|Ga0255743_10570227	Not Available	521	Open in IMG/M
3300023115\|Ga0255760_10335174	Not Available	728	Open in IMG/M
3300023116\|Ga0255751_10034953	All Organisms → cellular organisms → Bacteria	3627	Open in IMG/M
3300023116\|Ga0255751_10334995	Not Available	774	Open in IMG/M
3300023117\|Ga0255757_10292478	Not Available	799	Open in IMG/M
3300023117\|Ga0255757_10327607	Not Available	734	Open in IMG/M
3300023119\|Ga0255762_10059139	All Organisms → cellular organisms → Bacteria → Proteobacteria	2394	Open in IMG/M
3300023119\|Ga0255762_10084810	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1924	Open in IMG/M
3300023119\|Ga0255762_10177390	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium	1199	Open in IMG/M
3300023119\|Ga0255762_10183643	Not Available	1171	Open in IMG/M
3300023119\|Ga0255762_10230778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1003	Open in IMG/M
3300023119\|Ga0255762_10401577	Not Available	674	Open in IMG/M
3300023119\|Ga0255762_10480661	Not Available	589	Open in IMG/M
3300023119\|Ga0255762_10534302	Not Available	542	Open in IMG/M
3300023119\|Ga0255762_10573169	Not Available	513	Open in IMG/M
3300023172\|Ga0255766_10088982	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1889	Open in IMG/M
3300023175\|Ga0255777_10090616	Not Available	1987	Open in IMG/M
3300023175\|Ga0255777_10092730	Not Available	1959	Open in IMG/M
3300023175\|Ga0255777_10120011	Not Available	1670	Open in IMG/M
3300023176\|Ga0255772_10109803	All Organisms → cellular organisms → Bacteria → Proteobacteria	1718	Open in IMG/M
3300023176\|Ga0255772_10331451	Not Available	793	Open in IMG/M
3300023178\|Ga0255759_10531077	Not Available	684	Open in IMG/M
3300023178\|Ga0255759_10714776	Not Available	551	Open in IMG/M
3300023180\|Ga0255768_10032767	All Organisms → cellular organisms → Bacteria	4086	Open in IMG/M
3300023180\|Ga0255768_10036764	Not Available	3794	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	98.11%
Coastal	Environmental → Aquatic → Marine → Coastal	1.89%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	98.11%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.89%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	98.11%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300006404	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012967	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016729	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101402AT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016732	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101403AT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016754	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071405BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016762	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071413CT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016781	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101409CT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016787	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071411AT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017818	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017951	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017952	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017956	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017957	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017958	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017962	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017964	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017967	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017968	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017985	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017986	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018049	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018415	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018418	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018423	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018426	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018428	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019253	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101410AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019261	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041413BS (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019276	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101413AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020056	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101410AT metaG (spades assembly)	Environmental	Open in IMG/M
3300020207	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101406AT metaG (spades assembly)	Environmental	Open in IMG/M
3300022939	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG	Environmental	Open in IMG/M
3300023081	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG	Environmental	Open in IMG/M
3300023084	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG	Environmental	Open in IMG/M
3300023087	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG	Environmental	Open in IMG/M
3300023105	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG	Environmental	Open in IMG/M
3300023108	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG	Environmental	Open in IMG/M
3300023110	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG	Environmental	Open in IMG/M
3300023115	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG	Environmental	Open in IMG/M
3300023116	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG	Environmental	Open in IMG/M
3300023117	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG	Environmental	Open in IMG/M
3300023119	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG	Environmental	Open in IMG/M
3300023172	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG	Environmental	Open in IMG/M
3300023175	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG	Environmental	Open in IMG/M
3300023176	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG	Environmental	Open in IMG/M
3300023178	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG	Environmental	Open in IMG/M
3300023180	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0075515_109285031	3300006404	Aqueous	VSLSPDFSKKDINKNIDRLINEGYEVVSNASNGDSWESVISLVDEFEFR
Ga0129343_13240541	3300012967	Aqueous	VSLSPDFSKKDINKNIDRLINEGYEVVSNASNGDSW
Ga0182056_12417662	3300016729	Salt Marsh	VSLSPDFSKKDINKNIELLISEGYEVVSNASNGDSWESVISLLDEFEFRFEREC
Ga0182057_10408741	3300016732	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVARKASDGDSWESVISLLDEF
Ga0182057_10785711	3300016732	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVAQKVSDGDSWESVISILDEFEFRFE
Ga0182057_13610872	3300016732	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVARKASDGDSWES
Ga0182072_11339501	3300016754	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVAHKASDGDSWETVISILDEFEFR
Ga0182084_10603171	3300016762	Salt Marsh	VSLSPNFSRKDINKNIDRLINEGYELASKASDGDSW
Ga0182063_11164261	3300016781	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVAQKVSDGDSWESVISILDEFEFRFEREC
Ga0182080_17847852	3300016787	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYVVARKASDGDSWESVISLLD
Ga0181565_101945361	3300017818	Salt Marsh	VSLSPDFSKKDINENIDRLINEGHEVARKASDGDSWESVISLLDEFEFRFERECSVNSH
Ga0181565_103551451	3300017818	Salt Marsh	VSLSPDFSKKDINENIDRLINEGYVVARKASDGDSWESVISLLDEFEFRFERECSVNSH
Ga0181565_106793042	3300017818	Salt Marsh	VSLSPDFSKKDINTNINLLINEGYELARKASHGDTWESVISILDEFEFRFE
Ga0181565_109445971	3300017818	Salt Marsh	VSLSPDFSKKDINKNIDLLINEGYEIVCKASDGDSWESVISMLDEFEYRFE
Ga0181584_107124292	3300017949	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYVIARKASDGDSWESVISLLDEFEFRFERE
Ga0181577_107781442	3300017951	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVARKASDGDSWESVISLLDEFEFRFERECSV
Ga0181583_101397991	3300017952	Salt Marsh	VSLSPNFSKKNINKNIDLLINEGLEIVQKASVGDSWESVISLLDEFEFRFEREC
Ga0181583_101592231	3300017952	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYVLARKASDGDSWESVISLLDEFEFRFE
Ga0181583_105073413	3300017952	Salt Marsh	VSLSPDFSKKDINKNIDLLINEGYEVARKASDGDSWESV
Ga0181580_102360091	3300017956	Salt Marsh	VSLSPNFSRKDINKNIDRLINEGYEVASKASDGDSWESVISILDEF
Ga0181580_105498603	3300017956	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVARKASDGDSW
Ga0181580_105680641	3300017956	Salt Marsh	VSLSPDFSKKDINKNIDLLINEGYEVARKASDGDSWES
Ga0181580_106430872	3300017956	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVVQKVSDGDSWESVISILDEFGFRFERECS
Ga0181571_108026051	3300017957	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVAQKVSDGDSWESVISILDEFEFRF
Ga0181582_105170312	3300017958	Salt Marsh	VSLSPDFSKKDINKNINRLINEGYEVARKASDGDSWESVISLLDEFEYRFE
Ga0181581_100853114	3300017962	Salt Marsh	VSLSPDFSKKDINININRLINEGYEIARKASDGDSWESVISLLDEFEFRFERECSVN
Ga0181581_102025101	3300017962	Salt Marsh	VSLSPDFSKKDLNKNIDLLINEGYEVVQKASGGDSWESVIS
Ga0181581_102653211	3300017962	Salt Marsh	VSLSPDFSKRDINKNIDRLINEGYVIVRKASDGDSWDSVIALLDE
Ga0181589_102255451	3300017964	Salt Marsh	VSLNPDFSKKNINKKIDRLINEGYEIVRKASNGDSWASVISIFDEFEFR
Ga0181589_102908161	3300017964	Salt Marsh	VSLSPDFSKKDINKNIDLLINEGYEVARKASDGDSWESVISV
Ga0181589_109298171	3300017964	Salt Marsh	MSLSPDFSKKDINKNIDRLISEGYVVARKASDGDSWESVI
Ga0181589_109706761	3300017964	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYVVARKASDGDSWESVI
Ga0181590_105718421	3300017967	Salt Marsh	VSLSPDFFKKDINKNIDRLINVGYEVARKASDGDSWESVISLLDEFEFIFEKECSVNSH
Ga0181587_108180021	3300017968	Salt Marsh	VSLSPDFSKKDINKNIDLLINEGYVVARKASDGDSWESV
Ga0181576_101256815	3300017985	Salt Marsh	VSLSPDFSKKDINKNIDLLINEGYVVARKASDGDSWESVISLLDEFEFRFERECSVNS
Ga0181576_104556963	3300017985	Salt Marsh	VSLSPDFSQKDINKNIELLISEGYEVVSNASNGDSWESVIS
Ga0181576_107513252	3300017985	Salt Marsh	VSLSPDFSKKNINKNIDRLINEGYDIVSKASSGDSWETVISVLDEFE
Ga0181569_110685592	3300017986	Salt Marsh	VSLSPDFSKKDINKNIVRLINEGYEIVCKASDGDSWESVISVLDEFEFRFER
Ga0181572_101409461	3300018049	Salt Marsh	VSLSPNFSKRDINKNIDRLINEGYETVRKATDGDSWESVISVLDEF
Ga0181572_101411061	3300018049	Salt Marsh	VSLSPNFSKKDINKTIDFLITEGYKVVRKASDGDNWESVISLLDEFE
Ga0181572_105068853	3300018049	Salt Marsh	VSLSPDFSQKDINKNIELLISEGYEVVSNASNGDSWESVISLL
Ga0181572_105168401	3300018049	Salt Marsh	VSLSPDFSKKDINKNIELLISEGYEVVSNASNGDSW
Ga0181572_106639372	3300018049	Salt Marsh	VSLSPDFSKKDINKNIDRLIDEGYDVVRKVSDGDSWDSVISILDEFEFRFERE
Ga0181559_106588651	3300018415	Salt Marsh	VSLSPDFSKKDINKNIELLISEGYEVVSNASNGDSWESVISL
Ga0181567_100676835	3300018418	Salt Marsh	VSLSPDFSKKNINNNIDLLINEGYEVARKASDGDSWESVISLLDEFEFRFERECSVN
Ga0181567_103797231	3300018418	Salt Marsh	VSLSPDFSKKDINENIDRLINEGYVVARKASDGDSWESVISLLDEFEFRFERECS
Ga0181567_105850791	3300018418	Salt Marsh	VSLSPYFSKNDINKNIDRLINEGYEVVDKASSGDSWESVISILDEFEFRFERECSVNS
Ga0181567_108716991	3300018418	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYVLARKASDGDSWESVISLLDEF
Ga0181592_102644213	3300018421	Salt Marsh	VSLSPDFSKKDININIDLLINEGYEVVRKASDGDSWETVISLLDEFEFRF
Ga0181593_106904121	3300018423	Salt Marsh	VSLSPDFSKKDINKNINRLINEGYEVARKASDGDSWESVISLLDEFEYRFER
Ga0181591_101448401	3300018424	Salt Marsh	VSLSPNFSKKDINKNIDLLISEGYEVARKASDGDSWESVISILDEFEFRFERE
Ga0181591_103125371	3300018424	Salt Marsh	VSLSPDFSKKDINKNIDLLINEGYEIVCKASDGDSWESVISMLDEFEFRFERECSVNSH
Ga0181591_106437451	3300018424	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYDLVSKASSGDSWES
Ga0181566_101303394	3300018426	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEIVRMASSGDSWKSVISILDGFESRF
Ga0181566_101756833	3300018426	Salt Marsh	VSLSPDFSRKDISKNIDRLINEGYEVASKASDGDSWESVISIL
Ga0181566_104916811	3300018426	Salt Marsh	VSLSPDFSKKDINKNIDRLISEGYMVASEASKGDSWKS
Ga0181566_104995001	3300018426	Salt Marsh	VSLSPDFSKKDINKNIDLLINEGYRVARKASVGDSW
Ga0181566_111247042	3300018426	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYVVARKASDGDSW
Ga0181568_105218471	3300018428	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYELARKASDGDSWESVISLLDEFEFRFGRECS
Ga0181568_105673893	3300018428	Salt Marsh	VSLSPDFSKKDININIDLLINEGYEVVRKASDGDSWETVISLLDEFEFRFER
Ga0182064_10930651	3300019253	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVARKASDGDSWESVISLLDEFEFRFERE
Ga0182097_14525661	3300019261	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVARKASDGDS
Ga0182067_12961571	3300019276	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEIVSKASSGVS
Ga0182067_15913592	3300019276	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYVVVRKASDGDSWESVISLLDEFEFRFEREC
Ga0182067_16770122	3300019276	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYKVAQKVSDGDSWESVISILDEFGFRFERECSVN
Ga0181574_106411572	3300020056	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVAQKVSDGDSWESVISI
Ga0181570_103361411	3300020207	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYVVARKASDGDSWESVISL
Ga0181570_105766731	3300020207	Salt Marsh	VSLSPDFSKKDINKNVDRLINEGYMVAHKASDGDSWESVISVLDEF
Ga0255754_104284531	3300022939	Salt Marsh	VSLSPDFSKKDINKNIDRLIDEGYDLVHKVSDGDSWDSV
Ga0255764_100381771	3300023081	Salt Marsh	VSLSPDFSKKDINKNIDRLIDEGYDVVRKVSDGDSWDSVISILDEF
Ga0255764_102544683	3300023081	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYVVARKASDGDSWESVISLLDEFEFRFERECSVNSH
Ga0255778_100437451	3300023084	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYVVVRKASDGDSWESVISLLDEFEFRFERE
Ga0255778_103054402	3300023084	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVARKASDGDSWESVISLLD
Ga0255774_103611072	3300023087	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYVVARKASDGDSWESVISLLDEFEFRFER
Ga0255774_104121722	3300023087	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYKIVCKASSGDSWESVISMLDEFEF
Ga0255782_100662054	3300023105	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVAQKVSDGDSW
Ga0255782_100799591	3300023105	Salt Marsh	VSLSPDFSKKDINKNIDLLINEGYEVARKASDGDSWESVISVLDEFEFRFERECSVN
Ga0255782_101163331	3300023105	Salt Marsh	VPLSPDFSKKDINKNIDRLINEGYEIVCKASEGNSWESVISILDEFEFRFEREC
Ga0255784_103104923	3300023108	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYKIVCKASYGDSWESLISMLDEFEFRFEREC
Ga0255784_105436262	3300023108	Salt Marsh	VSLSPNFSRKDINKNIDRLINEGYKVASKASDGDSWESVISILDEFEFRF
Ga0255743_100402571	3300023110	Salt Marsh	VSLSPDFSKKDININIDLLINEGYEVVRKASDGDSWETVISLLD
Ga0255743_105702271	3300023110	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVARKASNGDSWESVISLL
Ga0255760_103351743	3300023115	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGHEIARKASDGDS
Ga0255751_100349535	3300023116	Salt Marsh	VSLSPDFSKKDINKNIDLLINEGYVVARKASDGDSWESVIS
Ga0255751_103349953	3300023116	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYKIVCKASSGDSWESVISL
Ga0255757_102924781	3300023117	Salt Marsh	VSLSPDFSKKDINKNIELLISEGYEVVSNASNGDSWESVISLLDEFEFRFER
Ga0255757_103276072	3300023117	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYVLARKASDGDSWESVISLLDEFEFRFQREC
Ga0255762_100591391	3300023119	Salt Marsh	VSLSPNFSRKDINKNIDRLINEGYELASKASDGDSWESVISILDEF
Ga0255762_100848104	3300023119	Salt Marsh	VSLSPNFSKKDINKNIDLLISEGYEVARKASDGDSWESVISILDE
Ga0255762_101773903	3300023119	Salt Marsh	VSLSPYFSKNDINKNIDRLINEGYEVVDKASSGDSWESVIS
Ga0255762_101836431	3300023119	Salt Marsh	VSLCPDFSKKNINKKIDRLINEGYEIVRKASDGDSWASVISIFDEFEFRFQRECSV
Ga0255762_102307783	3300023119	Salt Marsh	VSLSPDFSKKNINKNIDRLINEGYDIVSKASSGDSWESIISILDEF
Ga0255762_104015772	3300023119	Salt Marsh	VSLSPNFSRKDINKNIDRLINEGYEVASKASDGDSWESVISI
Ga0255762_104806611	3300023119	Salt Marsh	VSLSPDFSKKDINTNINLLINEGYELARKASHGDTWESVIS
Ga0255762_105343021	3300023119	Salt Marsh	VSLSPDFSKKDININIDRLINEGYELVCKASFGDSWESVISILDEFEFRFE
Ga0255762_105731691	3300023119	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVARKASDGDSWESVISLLDEFEF
Ga0255766_100889824	3300023172	Salt Marsh	VSLSPNFSKKDINKNIDLLISEGYEVVRKASDGDSWESVISI
Ga0255777_100906164	3300023175	Salt Marsh	VSLSPNFSKKDINKNIDRLINEGYEVARKASDGDSWKSVISLLDEFEFR
Ga0255777_100927301	3300023175	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYEVARKASDGDSWESVISMLDEFEFRFERECSVNS
Ga0255777_101200111	3300023175	Salt Marsh	VPLSPDFSKKDINKNIDRLINEGYEIVCKASEGNSWESVISILDEFEFRFERECSVNS
Ga0255772_101098034	3300023176	Salt Marsh	VSLSPDFSKKDINKNIDLLINEGYEVARKASDGDSWESVISVLDE
Ga0255772_103314511	3300023176	Salt Marsh	VSLSPDFSKKDINKNIEQLINEGYKVVSKASNGGS
Ga0255759_105310771	3300023178	Salt Marsh	VSLSPDFSEKDINKNIDRLINEGYKVVRKSSDGDSWE
Ga0255759_107147762	3300023178	Salt Marsh	VSLSPDFYKKDINKNIDRLINEGYETVCKASEGDSWESV
Ga0255768_100327671	3300023180	Salt Marsh	VSLSPDFSKKDINKNIDRLINEGYVVARKASDGDSWESVISILDEFEYRFERECSV
Ga0255768_100367646	3300023180	Salt Marsh	VSLSPDFSKKDVNKNIDLLIKEGHEVVRKASDGDSWDSVISVLDKFE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093902

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences