Metagenome / Metatranscriptome Family F093832

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093832
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	50 residues
Representative Sequence	MTDNLLLIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA
Number of Associated Samples	95
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.53 %
% of genes near scaffold ends (potentially truncated)	38.68 %
% of genes from short scaffolds (< 2000 bps)	84.91 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.717 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.981 % of family members)
Environment Ontology (ENVO)	Unclassified (40.566 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.396 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.54% β-sheet: 0.00% Coil/Unstructured: 38.46%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01053	Cys_Met_Meta_PP	54.72
PF01047	MarR	18.87
PF00664	ABC_membrane	9.43
PF13671	AAA_33	1.89
PF06224	HTH_42	1.89
PF04951	Peptidase_M55	1.89
PF02852	Pyr_redox_dim	0.94
PF12802	MarR_2	0.94
PF00571	CBS	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	54.72
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	54.72
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	54.72
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	54.72
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	54.72
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	54.72
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	54.72
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	54.72
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	54.72
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	54.72
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	54.72
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	1.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.72 %
Unclassified	root	N/A	45.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.72 %
Unclassified	root	N/A	45.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.72 %
Unclassified	root	N/A	45.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.28 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	28.30 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.28 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22.64 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	3.77 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.28 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.87 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	3.77 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.94 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.28 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	11.32 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	3.77 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.94 %
Actinobacteria bacterium 13_1_20CM_4_69_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	0.94 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.94 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.28 %
Cellulomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae	11.32 %
Tolypothrichaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae	3.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.94 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.94 %
Actinobacteria bacterium 13_1_20CM_4_69_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.28 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	11.32 %
Tolypothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix	3.77 %
Planctomyces	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces	0.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.94 %
Actinobacteria bacterium 13_1_20CM_4_69_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.28 %
unclassified Cellulomonas	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas	11.32 %
Tolypothrix campylonemoides	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides	3.77 %
unclassified Planctomyces	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces	0.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.94 %
Actinobacteria bacterium 13_1_20CM_4_69_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.28 %
Cellulomonas sp. B6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. B6	11.32 %
Tolypothrix campylonemoides VB511288	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	3.77 %
Planctomyces sp. SH-PL14	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces → Planctomyces sp. SH-PL14	0.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.94 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.94 %
Actinobacteria bacterium 13_1_20CM_4_69_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	0.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725004\|GPKC_F5V46DG02DPTCP	Not Available	501	Open in IMG/M
3300001686\|C688J18823_10557443	Not Available	733	Open in IMG/M
3300003992\|Ga0055470_10145503	Not Available	619	Open in IMG/M
3300004006\|Ga0055453_10019494	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300005163\|Ga0066823_10010538	Not Available	1301	Open in IMG/M
3300005165\|Ga0066869_10009752	All Organisms → cellular organisms → Bacteria	1288	Open in IMG/M
3300005168\|Ga0066809_10004694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2362	Open in IMG/M
3300005172\|Ga0066683_10592319	Not Available	673	Open in IMG/M
3300005329\|Ga0070683_100476531	Not Available	1192	Open in IMG/M
3300005329\|Ga0070683_100565535	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300005336\|Ga0070680_101031271	Not Available	711	Open in IMG/M
3300005337\|Ga0070682_100060656	All Organisms → cellular organisms → Bacteria	2392	Open in IMG/M
3300005339\|Ga0070660_100683809	Not Available	860	Open in IMG/M
3300005340\|Ga0070689_100206623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	1606	Open in IMG/M
3300005347\|Ga0070668_100958531	Not Available	767	Open in IMG/M
3300005353\|Ga0070669_101878137	Not Available	523	Open in IMG/M
3300005458\|Ga0070681_10361424	All Organisms → cellular organisms → Bacteria	1362	Open in IMG/M
3300005526\|Ga0073909_10096434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1162	Open in IMG/M
3300005547\|Ga0070693_100046756	All Organisms → cellular organisms → Bacteria	2459	Open in IMG/M
3300005564\|Ga0070664_100777514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	894	Open in IMG/M
3300005617\|Ga0068859_102267090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	599	Open in IMG/M
3300005718\|Ga0068866_10668825	Not Available	709	Open in IMG/M
3300005844\|Ga0068862_101821448	Not Available	618	Open in IMG/M
3300005884\|Ga0075291_1053270	Not Available	548	Open in IMG/M
3300005885\|Ga0075284_1009525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1081	Open in IMG/M
3300005887\|Ga0075292_1018480	Not Available	909	Open in IMG/M
3300005888\|Ga0075289_1018517	Not Available	982	Open in IMG/M
3300006046\|Ga0066652_100051304	All Organisms → cellular organisms → Bacteria	3108	Open in IMG/M
3300006046\|Ga0066652_101236095	Not Available	706	Open in IMG/M
3300006572\|Ga0074051_10003729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. B6	1152	Open in IMG/M
3300006572\|Ga0074051_10005072	Not Available	525	Open in IMG/M
3300006574\|Ga0074056_11519644	Not Available	517	Open in IMG/M
3300006581\|Ga0074048_13308992	Not Available	757	Open in IMG/M
3300006604\|Ga0074060_12027558	Not Available	1404	Open in IMG/M
3300006605\|Ga0074057_12330155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	1023	Open in IMG/M
3300006606\|Ga0074062_12966566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. B6	795	Open in IMG/M
3300006755\|Ga0079222_10057348	All Organisms → cellular organisms → Bacteria	1845	Open in IMG/M
3300006755\|Ga0079222_12430691	Not Available	525	Open in IMG/M
3300006806\|Ga0079220_12054669	Not Available	511	Open in IMG/M
3300006871\|Ga0075434_101631884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	653	Open in IMG/M
3300007076\|Ga0075435_102060351	Not Available	501	Open in IMG/M
3300009012\|Ga0066710_104180350	Not Available	539	Open in IMG/M
3300009094\|Ga0111539_10527350	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1376	Open in IMG/M
3300009094\|Ga0111539_11861708	Not Available	698	Open in IMG/M
3300009098\|Ga0105245_10221885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	1824	Open in IMG/M
3300009101\|Ga0105247_11780671	Not Available	512	Open in IMG/M
3300009137\|Ga0066709_104310502	Not Available	519	Open in IMG/M
3300009148\|Ga0105243_11867836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	633	Open in IMG/M
3300009176\|Ga0105242_10867755	Not Available	899	Open in IMG/M
3300009176\|Ga0105242_12603882	Not Available	555	Open in IMG/M
3300009545\|Ga0105237_10106612	All Organisms → cellular organisms → Bacteria	2794	Open in IMG/M
3300010337\|Ga0134062_10669239	Not Available	542	Open in IMG/M
3300010371\|Ga0134125_10510105	Not Available	1332	Open in IMG/M
3300010373\|Ga0134128_10449262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	1438	Open in IMG/M
3300010403\|Ga0134123_10723557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. B6	977	Open in IMG/M
3300011119\|Ga0105246_10094451	Not Available	2163	Open in IMG/M
3300012469\|Ga0150984_119842773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. B6	649	Open in IMG/M
3300012951\|Ga0164300_10195644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. B6	986	Open in IMG/M
3300012961\|Ga0164302_11313239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. B6	585	Open in IMG/M
3300012984\|Ga0164309_10186242	All Organisms → cellular organisms → Bacteria	1415	Open in IMG/M
3300012988\|Ga0164306_10979113	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300012989\|Ga0164305_10293516	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300013297\|Ga0157378_10111652	All Organisms → cellular organisms → Bacteria	2507	Open in IMG/M
3300013308\|Ga0157375_10454035	All Organisms → cellular organisms → Bacteria	1447	Open in IMG/M
3300014969\|Ga0157376_10084369	All Organisms → cellular organisms → Bacteria	2735	Open in IMG/M
3300015371\|Ga0132258_10063815	All Organisms → cellular organisms → Bacteria	8503	Open in IMG/M
3300015371\|Ga0132258_11096801	All Organisms → cellular organisms → Bacteria	2012	Open in IMG/M
3300015371\|Ga0132258_11934862	Not Available	1484	Open in IMG/M
3300015374\|Ga0132255_101253618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. B6	1118	Open in IMG/M
3300020070\|Ga0206356_11171627	Not Available	592	Open in IMG/M
3300020075\|Ga0206349_1418226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	568	Open in IMG/M
3300020077\|Ga0206351_10617609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532	Open in IMG/M
3300020082\|Ga0206353_11472980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. B6	731	Open in IMG/M
3300022467\|Ga0224712_10566523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	553	Open in IMG/M
3300025321\|Ga0207656_10039150	Not Available	2004	Open in IMG/M
3300025556\|Ga0210120_1017779	All Organisms → cellular organisms → Bacteria	1387	Open in IMG/M
3300025918\|Ga0207662_10039751	Not Available	2761	Open in IMG/M
3300025921\|Ga0207652_10158449	All Organisms → cellular organisms → Bacteria	2028	Open in IMG/M
3300025923\|Ga0207681_11371031	Not Available	594	Open in IMG/M
3300025949\|Ga0207667_10398619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1401	Open in IMG/M
3300025972\|Ga0207668_11628969	All Organisms → cellular organisms → Bacteria → Terrabacteria group	583	Open in IMG/M
3300026041\|Ga0207639_10292685	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300026118\|Ga0207675_100949477	Not Available	877	Open in IMG/M
3300027523\|Ga0208890_1019636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	964	Open in IMG/M
3300028711\|Ga0307293_10017916	All Organisms → cellular organisms → Bacteria	2054	Open in IMG/M
3300028718\|Ga0307307_10211118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. B6	616	Open in IMG/M
3300028722\|Ga0307319_10228278	Not Available	611	Open in IMG/M
3300028744\|Ga0307318_10099820	Not Available	982	Open in IMG/M
3300028771\|Ga0307320_10208379	Not Available	765	Open in IMG/M
3300028784\|Ga0307282_10252071	Not Available	848	Open in IMG/M
3300028793\|Ga0307299_10062436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1379	Open in IMG/M
3300028819\|Ga0307296_10017582	All Organisms → cellular organisms → Bacteria	3747	Open in IMG/M
3300028872\|Ga0307314_10047691	Not Available	1067	Open in IMG/M
3300028884\|Ga0307308_10514984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. B6	574	Open in IMG/M
3300031170\|Ga0307498_10364797	Not Available	559	Open in IMG/M
3300031184\|Ga0307499_10062574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. B6	942	Open in IMG/M
3300031938\|Ga0308175_100095742	All Organisms → cellular organisms → Bacteria	2720	Open in IMG/M
3300031938\|Ga0308175_100627138	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300031938\|Ga0308175_100832591	Not Available	1011	Open in IMG/M
3300031939\|Ga0308174_10332420	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300031996\|Ga0308176_10300908	All Organisms → cellular organisms → Bacteria	1562	Open in IMG/M
3300031996\|Ga0308176_11431356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. B6	735	Open in IMG/M
3300032074\|Ga0308173_11614487	Not Available	610	Open in IMG/M
3300033433\|Ga0326726_10267034	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces → Planctomyces sp. SH-PL14	1597	Open in IMG/M
3300033475\|Ga0310811_10944646	Not Available	768	Open in IMG/M
3300033500\|Ga0326730_1016202	Not Available	1586	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.81%
Host-Associated	Host-Associated	30.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.98%
Plants	Host-Associated → Plants	30.19%
Aquatic	Environmental → Aquatic	2.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.81%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.38%
Marine	Environmental → Aquatic → Marine	2.83%
Peat	Environmental → Terrestrial → Peat	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.21%
Loam	Environmental → Terrestrial → Soil → Loam	9.43%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.60%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.60%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.77%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.49%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.66%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.60%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	5.66%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	4.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.77%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	3.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.77%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.89%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725004	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300003992	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1	Environmental	Open in IMG/M
3300004006	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005884	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_302	Environmental	Open in IMG/M
3300005885	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_401	Environmental	Open in IMG/M
3300005887	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403	Environmental	Open in IMG/M
3300005888	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020077	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025556	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033500	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF7AN SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKC_02601000	2067725004	Soil	LIFAAAVLVVGAILIGAARFGASRRAVVAEVERLEDGHADELAA
C688J18823_105574431	3300001686	Soil	VTDHLLLIAGAPVIAVGAILIVAARFGASRRAVVAEVERLEQDEDELAA*
Ga0055470_101455031	3300003992	Natural And Restored Wetlands	MTDTLLLIFGAAVVLVCAVLIGAARFGASRRAVVDEIERLDEDERDDVAA*
Ga0055453_100194942	3300004006	Natural And Restored Wetlands	MTDTLLLIFGAAVFIVCAVLIGAARFGASRRAVVAEVERLEDEERDDLAA*
Ga0066823_100105381	3300005163	Soil	MTDHLLLIAGAPVVVVTAILIAAARFGASRRAVVAELERLEQDEADDIAA*
Ga0066869_100097521	3300005165	Soil	MTDHLLLIAGAPVVLVTAILIAAARFGASRRAVVAELERLEQDEADDLAA*
Ga0066809_100046941	3300005168	Soil	MTDHLLLIAGAPVIAVGAILIVAARFGASRRAVVAELERLEQDEADDIAA*
Ga0066683_105923191	3300005172	Soil	MTDNLLLFAGAPVIAVGAILVVAARFGASRRAVVAELERLEHDDADE
Ga0070683_1004765312	3300005329	Corn Rhizosphere	MTDNLLLIFGAAVLVVGAILIGAARFGASRRAVVAEVERLEEGDADELAA*
Ga0070683_1005655352	3300005329	Corn Rhizosphere	MTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA*
Ga0070680_1010312711	3300005336	Corn Rhizosphere	MTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLE
Ga0070682_1000606563	3300005337	Corn Rhizosphere	LAVAPEGQGDMTDTLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA*
Ga0070660_1006838092	3300005339	Corn Rhizosphere	LAIAPEGQGDMTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA
Ga0070689_1002066231	3300005340	Switchgrass Rhizosphere	MTDNLLLIFGAAVVVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA*
Ga0070668_1009585311	3300005347	Switchgrass Rhizosphere	RRGLAVTPEGQDDMTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEDDEADELAA*
Ga0070669_1018781371	3300005353	Switchgrass Rhizosphere	MTDNLLLIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA*
Ga0070681_103614243	3300005458	Corn Rhizosphere	MTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEDDEAD
Ga0073909_100964342	3300005526	Surface Soil	MTDHLLLIAGAPVVLVTAILIAAARFGASRRAVVAELERLEQDEADDIAA*
Ga0070693_1000467562	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEDDEADELAA*
Ga0070664_1007775142	3300005564	Corn Rhizosphere	GQDDMTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA*
Ga0068859_1022670901	3300005617	Switchgrass Rhizosphere	APEGQDDMTDNLLLIFGAAVVVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA*
Ga0068866_106688252	3300005718	Miscanthus Rhizosphere	MTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERL
Ga0068862_1018214482	3300005844	Switchgrass Rhizosphere	MTDNLLLIFGAAVVVVGVVLIGAARFGASRRAVVA
Ga0075291_10532702	3300005884	Rice Paddy Soil	MTDTLLLIFGAAVFVVCALLIGAARFGASRRAVVAEV
Ga0075284_10095252	3300005885	Rice Paddy Soil	DTLLLIFGAAVFVVCALLIGAARFGASRRAVVAEVERLEEDERDELAA*
Ga0075292_10184802	3300005887	Rice Paddy Soil	MTDNLLFIFGAAVVVVGVVLIGAARFGASRRAVVAEIERLEHDEAEDLAA*
Ga0075289_10185172	3300005888	Rice Paddy Soil	AAREGQVDMTDTLLLIFGAAVFVVCALLIGAARFGASRRAVVAEVERLEEDERDELAA*
Ga0066652_1000513044	3300006046	Soil	VTEGRGFAGAREGQGDMTDNLLIIFGVAIVVVGAVLIGAARFGASRRAVVAEIERLEQAEADDIAA*
Ga0066652_1012360951	3300006046	Soil	DMTDNLLLFAGAPVIAVGAILVVAARFGASRRAVVAELERLEHDDADELAA*
Ga0074051_100037292	3300006572	Soil	MTDHLLLIAGAPVIAVGAILVVAARFGASRRAVVAELERLEQDEAEEIAA*
Ga0074051_100050722	3300006572	Soil	RGFAIAREGQGDMTDHLLLIAGAPVIAVGAILIVAARFGASRRAVVAELERLEQDEADDIAA*
Ga0074056_115196442	3300006574	Soil	EGQGDMTDHLLLIAGAPVIAVGAILVVAARFGASRRAVVAELERLEQDEAEEIAA*
Ga0074048_133089922	3300006581	Soil	EGQGDMTDHLLLIAGAPVVLVTAILIAAARFGASRRAVVAELERLEQDEAEDIAA*
Ga0074060_120275582	3300006604	Soil	LLLIAGAPVVVVTAILIAAARFGASRRAVVAELERLEQDEADDLAA*
Ga0074057_123301552	3300006605	Soil	MTDHLLLIAGAPVVLVTAILIAAARFGASRRAVVAELERLEQDEADD
Ga0074062_129665661	3300006606	Soil	DMTDHLLLIAGAPVVLVTAILIAAARFGASRRAVVAELERLEQDEADDLAA*
Ga0079222_100573482	3300006755	Agricultural Soil	MTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVAAEIERLEHDEADELAA*
Ga0079222_124306911	3300006755	Agricultural Soil	MTDNLLLIFGAAVLVVGAILIGAARFGASRRAVVAEVERLEEGHADELAA*
Ga0079220_120546691	3300006806	Agricultural Soil	MTDNLLLIFAAAVVVVGAILIGAARFGASRRAVVAEVERLEDGHADELAA*
Ga0075434_1016318841	3300006871	Populus Rhizosphere	MTDNLLIIFGVAVFVVGAVLIAAARFGASRRAVVAEIER
Ga0075435_1020603512	3300007076	Populus Rhizosphere	LTGGRGFTGAPEGQGDMTDNLLIIFGVAVFVVGAVLIAAARFGASRRAVVAEIERLEHDEADHLAA*
Ga0066710_1041803501	3300009012	Grasslands Soil	MTDNLLLFAGAPVIAVGAILVVAARFGASRRAVVAELERLEHDDADELAA
Ga0111539_105273502	3300009094	Populus Rhizosphere	VVVVGVVLIGAARIGASRRAVVAEIERLEHDEADELAA*
Ga0111539_118617081	3300009094	Populus Rhizosphere	MTDNLLLIFGAAVMVVGVVLIGAARFGASRSAVVAEIERLEHDEADELAA*
Ga0105245_102218853	3300009098	Miscanthus Rhizosphere	LTVAPEGQGDMTDNLLLIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA
Ga0105247_117806711	3300009101	Switchgrass Rhizosphere	MTDNLLLIFGAVVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA*
Ga0066709_1043105022	3300009137	Grasslands Soil	MTDHLLLIAGAPVVAVGAILVVAARFGASRRAVVAELERLEQDEANELAA*
Ga0105243_118678361	3300009148	Miscanthus Rhizosphere	MTDNLLLIFGAAVVVVGVVLIGAARFGASRRAVVAEIERLEDDEADELAA*
Ga0105242_108677552	3300009176	Miscanthus Rhizosphere	EGQGDMTDHLLLIAGAPVVLVTAILIAAARFGASRRAVVAELERLEQDEADDIAA*
Ga0105242_126038822	3300009176	Miscanthus Rhizosphere	MTDHLLLIAGAPVVLVTAILIAAARFGASRRAVVAELERLEQDEAD
Ga0105237_101066123	3300009545	Corn Rhizosphere	LAVAPEGQGDMTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA
Ga0134062_106692391	3300010337	Grasslands Soil	MTDNLLLFAGAPVIAVGAILVVAARVGARQRSVVAELERLEHDDADELAA*
Ga0134125_105101052	3300010371	Terrestrial Soil	LAIAPEGQGDMTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVAAEIERLEHDEADELAA
Ga0134128_104492621	3300010373	Terrestrial Soil	LAIAPEGQGDMTDNLLLIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEDDEADELAA
Ga0134123_107235572	3300010403	Terrestrial Soil	MTDNLLLIFGAAVMVVGVVLIGAARFGASRRAVVAASERLEHDEADELAA*
Ga0105246_100944511	3300011119	Miscanthus Rhizosphere	LTVAPEGQDDMTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELA
Ga0150984_1198427731	3300012469	Avena Fatua Rhizosphere	MTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEQHEADELAA*
Ga0164300_101956442	3300012951	Soil	VTDHLFLIAGAPVITVGVILIAAARFGASRRAVVAELERLEDDESEDIAA*
Ga0164302_113132392	3300012961	Soil	LIAGAPVITVGVILIAAARFGASRRAVVAELERLEDDESEDIAA*
Ga0164309_101862423	3300012984	Soil	MTDHLLLIAGAPVVLVTAILIAAARFGASRRAVVAELERLEQ
Ga0164306_109791132	3300012988	Soil	PVIAVGAILIVAARFGASRRAVVAELERLEQDEADDIAA*
Ga0164305_102935162	3300012989	Soil	LAVAPEGQDDMTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVAAEIERLEHDEADELAA
Ga0157378_101116522	3300013297	Miscanthus Rhizosphere	LAVAPEGQDDMTDNLLLIFGAAVVVVGVVLIGAARFGASRRAVVAEIERLEHEADELAA*
Ga0157375_104540352	3300013308	Miscanthus Rhizosphere	MTDYLLLIFGAAVVVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA*
Ga0157376_100843692	3300014969	Miscanthus Rhizosphere	LAVAPEGQDDMTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEDDEADELAA
Ga0132258_100638154	3300015371	Arabidopsis Rhizosphere	MTDNLLIIFGTAVLVVCAVLIGAARFGASRRAVVAEVERLEEAQADDLAA*
Ga0132258_110968012	3300015371	Arabidopsis Rhizosphere	LAVVPEGQDDMTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVAAEIERLEHDEADELAA
Ga0132258_119348621	3300015371	Arabidopsis Rhizosphere	MTDHLLLIAGAPVIAVGAVLIAAARFGASRRAVVAELERLEDDQEADDLAA*
Ga0132255_1012536182	3300015374	Arabidopsis Rhizosphere	MTDHLLLIAGAPVVVVIAILIAAARFGASRRAVVAELERLDQDEADDIAA*
Ga0206356_111716272	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	LAVVPEGQDDMTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA
Ga0206349_14182261	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	IFGAAVVVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA
Ga0206351_106176091	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	NLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA
Ga0206353_114729802	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MTDNLLLIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEDDEADELAA
Ga0224712_105665232	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	LFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA
Ga0207656_100391504	3300025321	Corn Rhizosphere	MTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA
Ga0210120_10177792	3300025556	Natural And Restored Wetlands	MTDTLLLIFGAAVFIVCAVLIGAARFGASRRAVVAEVERLEDEERDDLAA
Ga0207662_100397511	3300025918	Switchgrass Rhizosphere	MTDNLLLIFGAAVVVVGVVLIGAARFGASRRAVVAEIERLEHDEAD
Ga0207652_101584492	3300025921	Corn Rhizosphere	MTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEDDEADELAA
Ga0207681_113710311	3300025923	Switchgrass Rhizosphere	MTDNLLLIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA
Ga0207667_103986191	3300025949	Corn Rhizosphere	MTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVAAEIERLEHDEADELAA
Ga0207668_116289691	3300025972	Switchgrass Rhizosphere	MTDNLLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELA
Ga0207639_102926853	3300026041	Corn Rhizosphere	MTDILLFIFGAAVMVVGVVLIGAARFGASRRAVVAEIERLEHDEADELAA
Ga0207675_1009494772	3300026118	Switchgrass Rhizosphere	MTDNLLLIFGAAVVVVGVVLIGAARFGASRRAVAAEIERLEHDEADELAA
Ga0208890_10196362	3300027523	Soil	MTDHLLLIAGAPVIAVGAILVVAARFGASRRAVVAELERLEQDEAEEIAA
Ga0307293_100179161	3300028711	Soil	MTDHLLLIAGAPIIAVGAILVVAARFGASRRAVVAELERLEQDEAEDLAA
Ga0307307_102111182	3300028718	Soil	AVAREGQGDMTDHLLLIAGAPVIAVGAILVAAARFGASRRAVVAELERLEQDEADDIAA
Ga0307319_102282781	3300028722	Soil	VGAILVVAARFGASRRAVVAELERLEQDEAEDIAA
Ga0307318_100998201	3300028744	Soil	MTDHLLLIAGAPVIAVGAILVAAARFGATRRAVVAELERL
Ga0307320_102083791	3300028771	Soil	MTDHLLLIAGAPVIAVGAILVVAARFGASRRAVVAELERLEQDEAEDIAA
Ga0307282_102520712	3300028784	Soil	MTDHLLLIAGAPVIAVGAILVAAARFGASRRAVVAELERLEQDEADDIAA
Ga0307299_100624361	3300028793	Soil	MTDHLLLIAGAPIIAVGAILVVAARFGASRRAVVAELERLEQDEAEDLAAE
Ga0307296_100175824	3300028819	Soil	PIIAVGAILVVAARFGASRRAVVAELERLEQDEAEDLAA
Ga0307314_100476911	3300028872	Soil	MTDHLLVIFGAAVLMVGAILIGAARFGASRRAVVAEVERLEEAEADELAA
Ga0307308_105149841	3300028884	Soil	VIAVGAILVAAARFGASRRAVVAELERLEQDEADDIAA
Ga0307498_103647972	3300031170	Soil	DMTDHLLLIAGAPVVLVTAILIAAARFGASRRAVVAELERLEQDEADDIAA
Ga0307499_100625742	3300031184	Soil	MTDHLLIIAGAPVVVVTAILIAAARFGASRRAVVAELERLEQDEADDIAA
Ga0308175_1000957423	3300031938	Soil	MTDNLLFIFGAAVVVVGVVLIGAARFGASRRAVVAEIERLEQHEADELAA
Ga0308175_1006271383	3300031938	Soil	MTDNLLLIFGAAVLVVGAILIGAARFGASRRAVVAEVERLEEGHADE
Ga0308175_1008325912	3300031938	Soil	PAREGQGDMTDNLLLIFGAAVLVVGAILIGAARFGASRRAVAAEVERLEQGHADDLAA
Ga0308174_103324201	3300031939	Soil	MTDNLLVIFAAAVLVVGAILIGAARFGASRRAVQAEVERLEQGHADDLAA
Ga0308176_103009082	3300031996	Soil	MTDNLLLIFGAAVLVVGAILIGAARFGASRRAVVAEVERLEEGDADELAA
Ga0308176_114313562	3300031996	Soil	MTDNLLVIFAAAVLVVGAILIGAARFGASRRAVAAEVERLEQGHADDLAA
Ga0308173_116144871	3300032074	Soil	MTDNLLVIFAAAVLVVGAILIGAARFGASRRAVVAEVERLEEGHADELAA
Ga0326726_102670342	3300033433	Peat Soil	MTDHLLLIAGAPVIAVGAILIVAARFGASRRAVVAELERLEQDEAEDIAA
Ga0310811_109446462	3300033475	Soil	MTDNLLLIFGAAVLVVGAILIGAARFGASRRAVVAEVERLEEGHADELAA
Ga0326730_10162022	3300033500	Peat Soil	MTDHLLLIAGAPVIAVGAILIVAARFGASRRAVVAELERLEQDDAEDIAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093832

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences