Metagenome / Metatranscriptome Family F093830

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093830
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	51 residues
Representative Sequence	VSGYTRQEVARRAGVDPDYVDRLVELGILTPDAGDAFSPGDVLRA
Number of Associated Samples	83
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	60.38 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	95.28 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.019 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (17.924 % of family members)
Environment Ontology (ENVO)	Unclassified (33.962 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.566 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.14% β-sheet: 5.48% Coil/Unstructured: 64.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00406	ADK	5.66
PF00027	cNMP_binding	3.77
PF13649	Methyltransf_25	3.77
PF01494	FAD_binding_3	2.83
PF00005	ABC_tran	2.83
PF01212	Beta_elim_lyase	2.83
PF12902	Ferritin-like	1.89
PF08450	SGL	1.89
PF00436	SSB	1.89
PF11706	zf-CGNR	1.89
PF07690	MFS_1	1.89
PF08031	BBE	0.94
PF14376	Haem_bd	0.94
PF01175	Urocanase	0.94
PF07676	PD40	0.94
PF03704	BTAD	0.94
PF03453	MoeA_N	0.94
PF13683	rve_3	0.94
PF07883	Cupin_2	0.94
PF12974	Phosphonate-bd	0.94
PF05157	T2SSE_N	0.94
PF16701	Ad_Cy_reg	0.94
PF08808	RES	0.94
PF06032	DUF917	0.94
PF12848	ABC_tran_Xtn	0.94
PF00211	Guanylate_cyc	0.94
PF06808	DctM	0.94
PF08669	GCV_T_C	0.94
PF07992	Pyr_redox_2	0.94
PF00903	Glyoxalase	0.94
PF02775	TPP_enzyme_C	0.94
PF12680	SnoaL_2	0.94
PF03551	PadR	0.94
PF02852	Pyr_redox_dim	0.94
PF00149	Metallophos	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1167	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain	Transcription [K]	5.66
COG0563	Adenylate kinase or related kinase	Nucleotide transport and metabolism [F]	5.66
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	5.66
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	2.83
COG4992	Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase	Amino acid transport and metabolism [E]	2.83
COG3033	Tryptophanase	Amino acid transport and metabolism [E]	2.83
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	2.83
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	2.83
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	2.83
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	2.83
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	2.83
COG1003	Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain	Amino acid transport and metabolism [E]	2.83
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	2.83
COG0112	Glycine/serine hydroxymethyltransferase	Amino acid transport and metabolism [E]	2.83
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	2.83
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	2.83
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	2.83
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	2.83
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	2.83
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	2.83
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	2.83
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	2.83
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	1.89
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	1.89
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	1.89
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	1.89
COG3535	Uncharacterized conserved protein, DUF917 family	Function unknown [S]	0.94
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	0.94
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	0.94
COG5654	Predicted toxin component of a toxin-antitoxin system, contains RES domain	Defense mechanisms [V]	0.94
COG2987	Urocanate hydratase	Amino acid transport and metabolism [E]	0.94
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.94
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.94
COG0303	Molybdopterin Mo-transferase (molybdopterin biosynthesis)	Coenzyme transport and metabolism [H]	0.94
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.94
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.94
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.96 %
Unclassified	root	N/A	16.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.96 %
Unclassified	root	N/A	16.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.02 %
Unclassified	root	N/A	16.04 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.94 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	66.04 %
Unclassified	root	N/A	16.04 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	56.60 %
Unclassified	root	N/A	16.04 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.83 %
Candidatus Woesearchaeota	phylum	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	43.40 %
Unclassified	root	N/A	16.04 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	2.83 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.89 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.94 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	28.30 %
Unclassified	root	N/A	16.04 %
Euzebyales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales	2.83 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.89 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.94 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.94 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.94 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	28.30 %
Unclassified	root	N/A	16.04 %
Euzebyaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → Euzebyaceae	2.83 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	1.89 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.94 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.94 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.94 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.94 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	28.30 %
Unclassified	root	N/A	16.04 %
Euzebya	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → Euzebyaceae → Euzebya	2.83 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1.89 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.94 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.94 %
Agromyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces	0.94 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.94 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	28.30 %
Unclassified	root	N/A	16.04 %
Euzebya	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → Euzebyaceae → Euzebya	2.83 %
Solirubrobacter pauli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	1.89 %
Agromyces flavus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces → Agromyces flavus	0.94 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.94 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.94 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.94 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10760962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	727	Open in IMG/M
3300000891\|JGI10214J12806_10966203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	607	Open in IMG/M
3300003373\|JGI25407J50210_10065430	All Organisms → cellular organisms → Bacteria → Terrabacteria group	910	Open in IMG/M
3300004009\|Ga0055437_10303944	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300004081\|Ga0063454_101066204	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300004463\|Ga0063356_104959640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	572	Open in IMG/M
3300004643\|Ga0062591_100680172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	926	Open in IMG/M
3300005093\|Ga0062594_101850948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	638	Open in IMG/M
3300005161\|Ga0066807_1042078	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300005187\|Ga0066675_10239389	All Organisms → cellular organisms → Bacteria	1292	Open in IMG/M
3300005187\|Ga0066675_11051976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	610	Open in IMG/M
3300005459\|Ga0068867_102061829	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300005562\|Ga0058697_10132354	Not Available	1071	Open in IMG/M
3300005843\|Ga0068860_101144102	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300005937\|Ga0081455_10043766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3913	Open in IMG/M
3300006572\|Ga0074051_11666907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	964	Open in IMG/M
3300006576\|Ga0074047_11533063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	539	Open in IMG/M
3300006847\|Ga0075431_101026308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	791	Open in IMG/M
3300006969\|Ga0075419_11062208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	592	Open in IMG/M
3300007004\|Ga0079218_10139228	All Organisms → cellular organisms → Bacteria	1750	Open in IMG/M
3300007004\|Ga0079218_13163931	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	556	Open in IMG/M
3300009100\|Ga0075418_12404187	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300009100\|Ga0075418_12879871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	525	Open in IMG/M
3300009147\|Ga0114129_12132498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	675	Open in IMG/M
3300009156\|Ga0111538_10073258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	4360	Open in IMG/M
3300009162\|Ga0075423_10049859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4308	Open in IMG/M
3300009162\|Ga0075423_11781468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	664	Open in IMG/M
3300009816\|Ga0105076_1123522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300009840\|Ga0126313_10174866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1636	Open in IMG/M
3300009840\|Ga0126313_10307852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1240	Open in IMG/M
3300009840\|Ga0126313_11528658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	555	Open in IMG/M
3300009840\|Ga0126313_11832953	Not Available	508	Open in IMG/M
3300010038\|Ga0126315_10444445	Not Available	820	Open in IMG/M
3300010041\|Ga0126312_10202203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1388	Open in IMG/M
3300010042\|Ga0126314_10226845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1321	Open in IMG/M
3300010042\|Ga0126314_11381028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	529	Open in IMG/M
3300010166\|Ga0126306_10884028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	724	Open in IMG/M
3300010166\|Ga0126306_11581661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	545	Open in IMG/M
3300010304\|Ga0134088_10052727	Not Available	1870	Open in IMG/M
3300010336\|Ga0134071_10734704	Not Available	524	Open in IMG/M
3300010999\|Ga0138505_100064789	Not Available	538	Open in IMG/M
3300012204\|Ga0137374_10539917	Not Available	898	Open in IMG/M
3300012208\|Ga0137376_11139828	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300012353\|Ga0137367_10818028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	646	Open in IMG/M
3300012356\|Ga0137371_10723045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Agromyces → Agromyces flavus	761	Open in IMG/M
3300012358\|Ga0137368_10074143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2741	Open in IMG/M
3300012358\|Ga0137368_10216465	Not Available	1349	Open in IMG/M
3300012359\|Ga0137385_11526505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532	Open in IMG/M
3300012360\|Ga0137375_11254303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	563	Open in IMG/M
3300012532\|Ga0137373_10048327	All Organisms → cellular organisms → Bacteria	3972	Open in IMG/M
3300012911\|Ga0157301_10356759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300012937\|Ga0162653_100006085	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1318	Open in IMG/M
3300012951\|Ga0164300_10712061	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300012958\|Ga0164299_10387392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	893	Open in IMG/M
3300012972\|Ga0134077_10442052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	568	Open in IMG/M
3300014487\|Ga0182000_10482440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300014487\|Ga0182000_10547051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	548	Open in IMG/M
3300015077\|Ga0173483_10264113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	826	Open in IMG/M
3300015371\|Ga0132258_13535306	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300015374\|Ga0132255_102375377	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300018060\|Ga0187765_10854047	Not Available	612	Open in IMG/M
3300018075\|Ga0184632_10379933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	598	Open in IMG/M
3300018432\|Ga0190275_11002131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	906	Open in IMG/M
3300018465\|Ga0190269_11458109	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300018469\|Ga0190270_10252037	All Organisms → cellular organisms → Bacteria	1537	Open in IMG/M
3300018476\|Ga0190274_11842772	Not Available	700	Open in IMG/M
3300019269\|Ga0184644_1511653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	600	Open in IMG/M
3300021078\|Ga0210381_10018473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → Euzebyaceae → Euzebya	1818	Open in IMG/M
3300021078\|Ga0210381_10040183	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1361	Open in IMG/M
3300021510\|Ga0222621_1018229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1396	Open in IMG/M
3300026670\|Ga0208216_102782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	632	Open in IMG/M
3300026673\|Ga0208847_100601	Not Available	989	Open in IMG/M
3300027636\|Ga0214469_1040415	All Organisms → cellular organisms → Bacteria	1481	Open in IMG/M
3300028711\|Ga0307293_10228466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	592	Open in IMG/M
3300028712\|Ga0307285_10051128	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1031	Open in IMG/M
3300028720\|Ga0307317_10261669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → Euzebyaceae → Euzebya	584	Open in IMG/M
3300028722\|Ga0307319_10040164	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1460	Open in IMG/M
3300028784\|Ga0307282_10114231	All Organisms → cellular organisms → Bacteria	1262	Open in IMG/M
3300028875\|Ga0307289_10098147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → Euzebyaceae → Euzebya	1194	Open in IMG/M
3300028875\|Ga0307289_10214211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	792	Open in IMG/M
3300028875\|Ga0307289_10441682	Not Available	535	Open in IMG/M
3300028881\|Ga0307277_10473578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	561	Open in IMG/M
3300030336\|Ga0247826_10157743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1504	Open in IMG/M
3300031229\|Ga0299913_11703923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	580	Open in IMG/M
3300031548\|Ga0307408_101095188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	739	Open in IMG/M
3300031548\|Ga0307408_102078054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300031731\|Ga0307405_10236992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1349	Open in IMG/M
3300031731\|Ga0307405_10248347	Not Available	1322	Open in IMG/M
3300031731\|Ga0307405_10375919	Not Available	1104	Open in IMG/M
3300031731\|Ga0307405_11572292	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300031824\|Ga0307413_10395181	Not Available	1081	Open in IMG/M
3300031852\|Ga0307410_10771789	All Organisms → cellular organisms → Bacteria → Terrabacteria group	815	Open in IMG/M
3300031903\|Ga0307407_10456041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	929	Open in IMG/M
3300031995\|Ga0307409_102290211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
3300031995\|Ga0307409_102842674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	512	Open in IMG/M
3300032002\|Ga0307416_100447464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1343	Open in IMG/M
3300032002\|Ga0307416_100994784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	941	Open in IMG/M
3300032002\|Ga0307416_101081766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	906	Open in IMG/M
3300032002\|Ga0307416_101552743	Not Available	767	Open in IMG/M
3300032004\|Ga0307414_10231444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1524	Open in IMG/M
3300032004\|Ga0307414_10988895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	774	Open in IMG/M
3300032005\|Ga0307411_11172563	Not Available	695	Open in IMG/M
3300032080\|Ga0326721_10694253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	628	Open in IMG/M
3300032126\|Ga0307415_100679618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	926	Open in IMG/M
3300032159\|Ga0268251_10193554	All Organisms → cellular organisms → Bacteria → Terrabacteria group	793	Open in IMG/M
3300033551\|Ga0247830_10266241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1303	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.04%
Host-Associated	Host-Associated	33.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.38%
Plants	Host-Associated → Plants	33.96%
Aquatic	Environmental → Aquatic	5.66%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.49%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.47%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.66%
Freshwater	Environmental → Aquatic → Freshwater	2.83%
Sediment	Environmental → Aquatic → Sediment	1.89%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.89%
Phylloplane	Host-Associated → Plants → Phylloplane	1.89%
Marine	Environmental → Aquatic → Marine	0.94%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.47%
Loam	Environmental → Terrestrial → Soil → Loam	3.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.77%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.89%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.94%
Sand	Environmental → Terrestrial → Soil → Sand	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.47%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.89%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.89%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	17.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.98%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	9.43%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.49%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.72%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.77%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.89%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.89%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.89%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.94%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005161	Soil and rhizosphere microbial communities from Laval, Canada - mgLPA	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300026670	Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1111 (SPAdes)	Environmental	Open in IMG/M
3300026673	Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1116 (SPAdes)	Environmental	Open in IMG/M
3300027636	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57 HiSeq	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_107609623	3300000550	Soil	VSGYTRQEVARRAGVDPDYVDRLVELGILTPDAGDAFSPGDVLRA
JGI10214J12806_109662032	3300000891	Soil	MLGGGVSGHTRQEVAQRAGVDPDYLDRLVELGILRPAAGDVFSPGDALRARWLQSLERAGVPLEGLA
JGI25407J50210_100654302	3300003373	Tabebuia Heterophylla Rhizosphere	VSGYPRQEVAQRAGVDPDYVDHLVELGILTPAAEDAFSPGDVLRARWLQS
Ga0055437_103039442	3300004009	Natural And Restored Wetlands	MTIYAIGVTDFSRQEAATRAGVTLAYVDRLVELGIVTPAPG
Ga0063454_1010662042	3300004081	Soil	MVAYSRDEAARWAGVEPGYVDRLVELGVIVPNGNRFSDGDVRRAMI
Ga0063356_1049596402	3300004463	Arabidopsis Thaliana Rhizosphere	MLVVVEWISRQQVAQRAGVDPEYVDRLVELGILRPAAGGVFSP
Ga0062591_1006801722	3300004643	Soil	VGEHSREEVARRAGVDPEYVDRLVECGIVRPGPGNAYSRGDVRRARWVHN
Ga0062594_1018509481	3300005093	Soil	VVEYSREEVARRAGVDPGYLDRLVELAILKPGAADTFSQGDVRRA
Ga0066807_10420782	3300005161	Soil	MLGGAVSGYTRQEVAQRAGVDPEYLDRLVELGILTPAAGDG
Ga0066675_102393891	3300005187	Soil	VGEHSRQEVARRAGVDPGYVDRLVELGILQPGKDDEFSQGDVRRARWV
Ga0066675_110519761	3300005187	Soil	MGERSREEVARRAGVDPGYVDRSVELGILGPGQDDAFSQGDVLRARWVHSLEAAGVPLEGMAAA
Ga0068867_1020618291	3300005459	Miscanthus Rhizosphere	VGEYARDEVAGRAGVEPDYVDRLVELGFLTPGDDGGFSTGDMRRARWVRSFEDSGVPLDA
Ga0058697_101323542	3300005562	Agave	VSGYTRQEVAQRAGVDPDYLDRLVELGILTPASADA
Ga0068860_1011441021	3300005843	Switchgrass Rhizosphere	VGEHSRQEVARRAGVDPAYVDRLVELGILRPGQDDAFSQSDVLRARWVHGLEEAGVPLDGMATAV
Ga0081455_100437661	3300005937	Tabebuia Heterophylla Rhizosphere	MITVVFADKQEVARRAGVDPGFVGRLVDLAILVPAGDGGFSSGDVLRARWVQSLE
Ga0074051_116669071	3300006572	Soil	MHEVMLGRAVSGYTRQEVAQRAGVDPEYLDRLVELGILTPTAGDGFSLGDVLRARWLQSV
Ga0074047_115330631	3300006576	Soil	MLGGAVSGYTRQEVAQRAGVDPEYLDRLVELGILTPAAGDAFSPGD
Ga0075431_1010263082	3300006847	Populus Rhizosphere	VIVLSKQDVAVRAGVGPDYVDRLVELGILKPGIGDAFSLGDV
Ga0075419_110622082	3300006969	Populus Rhizosphere	MLGGAVSGYTREEVAQRAGVDPEYLDRLVELGILTPDAGGEFAPGDVLRARWLRSLERAG
Ga0079218_101392281	3300007004	Agricultural Soil	VSGYSRQEVAQRAGVDPDYVDRLVELGILTPAAGDAFSAGDALRARWLQSFERAGVPLE
Ga0079218_131639311	3300007004	Agricultural Soil	VDAPWRQEVAWRAGVEPEYVDRLVELRILKPGTGDASA
Ga0075418_124041871	3300009100	Populus Rhizosphere	MSGHSRQEVAQRAGVDPDDLDRLVELGILTPDAGGEFAPGDVLRARWLRSLERAG
Ga0075418_128798712	3300009100	Populus Rhizosphere	VAGDVCWGAGGYAGGGVSGYSGREVAQRAGVEPGYVDRLVELGILRPAGGVGFSPGDVLRARWVQSLERAGVPLEGLAAA
Ga0114129_121324981	3300009147	Populus Rhizosphere	VTGLSRQDVADRAGVDPGYVDRLVELGILRPGSGTTFSAGDV
Ga0111538_100732585	3300009156	Populus Rhizosphere	VSGYSRQEIARRAGVDPDYLDHLVELGILTPVTGDEFSPGDVLRARWVESLER
Ga0075423_100498597	3300009162	Populus Rhizosphere	VSGYTRQEVARRAGVDPDYLDHLVELGILTPDAGDAFSPGDVLRARWLQSFEGAGVPLDGIAAAIR
Ga0075423_117814681	3300009162	Populus Rhizosphere	VSGYTRQEVAQRAGVDPDYLDRLVELGIVTPGAGDVFSPGDVLRARWLQSFEGAGVP
Ga0105076_11235221	3300009816	Groundwater Sand	VTGLSKQEVADRAGVDPDYVDRLVELGILEPGSGDTFSPGDVRRARWVQSFER
Ga0126313_101748663	3300009840	Serpentine Soil	VSGYPRQEVAQRAGVDPDYIDRLVDLGILTPAAGGAFSPGDAL
Ga0126313_103078522	3300009840	Serpentine Soil	VSRYSRQEVAQRAGVDPDYLDRLVELGILTPGAGDAFWPGDALR
Ga0126313_115286581	3300009840	Serpentine Soil	VSGYTRQEVAQRAGVDPDYVDRLAELGILTPAAGDAFSPGDALRARWLQSLERAGVPLEGLA
Ga0126313_118329531	3300009840	Serpentine Soil	VSEYSRQEIAQRAGVDPDYVDRLVELGILTPAAGDAFSPGD
Ga0126315_104444452	3300010038	Serpentine Soil	VSGYTRQEVAQRAGVDPGYIDRLVELGILTPDAGGAFSPGDALRARWLQSLERAG
Ga0126312_102022033	3300010041	Serpentine Soil	VSGHTRQEVAQRAGVDPGYVDRLVELGILTPDAGGAFSPGDALRARWLQSLERA
Ga0126314_102268453	3300010042	Serpentine Soil	VSGHTRQEVAQRAGVDPGYVDRLVELGILTPDAGGAFSP
Ga0126314_113810282	3300010042	Serpentine Soil	MSGHTRQEVAQRAGVDPGYVDRLVELGILTPDAGGAF
Ga0126306_108840282	3300010166	Serpentine Soil	VSGYTRQEVAQRAGVDPDYVDRLVEFGILTPDAGDAFSPGDALRARWLQSFEGAGVPLEGVAA
Ga0126306_115816612	3300010166	Serpentine Soil	VSGYTRQEVAQRAGVDPGYVDRLAELGILTPAAADAFMPGDALRARWLQSLERAGVPLEGLAAAVRD
Ga0134088_100527273	3300010304	Grasslands Soil	VARGAGVEPEYVDRLVELGILRPGPGGVFPRGDVLRARWVHGLEEAGVPLDGMAAAV
Ga0134071_107347041	3300010336	Grasslands Soil	VDGYSRQEVAGRAGVKVGYVDRLVELGILKPGTEDAFSQ
Ga0138505_1000647892	3300010999	Soil	VRGLSRQKVAERAGVDPGHVDRLVELGILTPDAEDEFSPGD
Ga0137374_105399171	3300012204	Vadose Zone Soil	VGEHSRQEVARRAGVDTDYVDRLVELGILKTGSGDAYSPGEVRRVRWVQSFERAGVPLEG
Ga0137376_111398282	3300012208	Vadose Zone Soil	MGERSREEVARRAGVDPGYVDRLVELGILGPGRDDAFSQGDVLRARWVHSLQAAGVPLEGMAAAVR
Ga0137367_108180281	3300012353	Vadose Zone Soil	VARKAGVDPDYVDRLVELGLLKPGTGDTFSPRDVRRARWVQSLERAGVPLDGMATAVR
Ga0137371_107230451	3300012356	Vadose Zone Soil	VAEHSREEVARRAGVDPDYVDRLVELGILRPGAGGAFSQGDSRKARWVRGLERAGVPLEGMAAAVRD
Ga0137368_100741433	3300012358	Vadose Zone Soil	VGEHSRQEVARKAGVDPDYVDRLVELGLLKPGTGDTFSPGDVRRARW
Ga0137368_102164653	3300012358	Vadose Zone Soil	VSGYTRQEVAQRAGVDPDDLDRLVELGILTPAAGEAFSPGD
Ga0137385_115265052	3300012359	Vadose Zone Soil	MGEQSGKEVARRAGVDPGYVDRLVELGILRPGENDAFTQGDVLRARWVHSLEAAGVPL
Ga0137375_112543031	3300012360	Vadose Zone Soil	VAARAGVDPDYIDRLVELGIMEPGDGDTFSPGDVRRARWVQSFERAGVPLE
Ga0137373_100483271	3300012532	Vadose Zone Soil	VDGYSRQEVAGRAGVNVGYVDRLVELGILKPGTEDAFSQGDVRRARWVHSLEAA
Ga0157301_103567592	3300012911	Soil	VSGYSRQEVAQRAGVDPDYVDRLVELGVLTPAAGEAFSPGDALRARWLQSLERAGVPLEG
Ga0162653_1000060853	3300012937	Soil	VSEYSRQEIAQRAGVDPDYVDRLVESGILTPDAEDTF
Ga0164300_107120611	3300012951	Soil	VGEHSRQEVARRAGLDAGYVDRLVELGILRPGQDDVFSQSDVLR
Ga0164299_103873921	3300012958	Soil	VGEHSHQEVARRAGVDPGYVDRLVELGILRPGQDDLFSQSDVLRARWVH
Ga0134077_104420521	3300012972	Grasslands Soil	VGQHSRQEVARRAGVDPDYVDRLVELAILKPGSGDTFSPGDARRARWVQSFERAGVPLEGIAAAVRS
Ga0182000_104824401	3300014487	Soil	VSGYTRQEVAQRAGVDPDYLDRLVELGILTPDAGDAFSPGDALRARWLRSLEQAGVPLDGVAAAIRDGSLS
Ga0182000_105470511	3300014487	Soil	VSGYTRQEVAQRAGVDPDYVDRLVELGILTPDAGDAFSPGDVLRARWLESFEGAGVPLEG
Ga0173483_102641131	3300015077	Soil	MGEHSRQEVARRAGVDPGYVDRLVELGILRPGEAGASAQGDV
Ga0132258_135353063	3300015371	Arabidopsis Rhizosphere	VAYSREDVAGRAGVEPGYVDRLVEHGILTPGDGGEFSQGDVLRARWVQSLEE
Ga0132255_1023753773	3300015374	Arabidopsis Rhizosphere	VAYSREDIAGRAGVEPGYVDRLVEHGILTPGDGGEFSQGDVLRARWVQSLEE
Ga0187765_108540472	3300018060	Tropical Peatland	VPTHTRLETAERAGVGPDYVDRLVGLGIIVPEGPDAFSNGD
Ga0184632_103799332	3300018075	Groundwater Sediment	EVAGRAGVDPDYVDRLVELGVLRPGGGNTFSPGDVRRARWV
Ga0190275_110021311	3300018432	Soil	VSGYTRQEVAQRAGVDPDYLDRLVELGILTPGAGDEFSPGDVL
Ga0190269_114581091	3300018465	Soil	VSGYPRQEVARRAGVDPDYLERLVELGILTPDARDSFSP
Ga0190270_102520372	3300018469	Soil	VSEHSRHEVARKAGVDSGYVDHLVEVGILKPGEGDGFSAGDVRKARWIQSLERAGVPLDE
Ga0190274_118427721	3300018476	Soil	VSGYTRQEVARRAGVDPDYVDQLVHLGILTPDAGDAFSPGDVLRTR
Ga0184644_15116531	3300019269	Groundwater Sediment	VTGCATCVACSSAEVMLGGAVSGYTREEVAQRAGVDPEYVDRLVELGILTPATGDGFSPGDVLRA
Ga0210381_100184731	3300021078	Groundwater Sediment	VGEHSREEVARRAGVDPGYVDRLVELGILGPDEDDAFSPG
Ga0210381_100401831	3300021078	Groundwater Sediment	VSEYSRQEIAQRAGVDPDYVDRLVESGILTPDAEDTFSPGDVLRARWVQSL
Ga0222621_10182292	3300021510	Groundwater Sediment	MLGGAVSGYTREEVAQRAGVDPEYLDRLVELGILTPAGGDGFSPGDVL
Ga0208216_1027821	3300026670	Soil	VSGYTRQEVAQRAGVDPDYVDRLVELGILTPAAADAFSPGDALRARWLRSLEQAG
Ga0208847_1006013	3300026673	Soil	VSGYSRQEVARRAGVDPGYVDRLVELGILTPAAGDAFSPGDVLRARWLQSLEQ
Ga0214469_10404154	3300027636	Soil	VSEHSRAEVARRAGVDTDYVDRLVELGILKPGSGYVFSSGDVRRARWI
Ga0307293_102284661	3300028711	Soil	MLGGGVSGYTREEVAQRAGVDPGYLDRLVELGILTPATG
Ga0307285_100511281	3300028712	Soil	VSEYSRQEIAQRAGVDPDYVDRLVESGILTPDDEDMFSPGDVLRARWVQSLER
Ga0307317_102616691	3300028720	Soil	VGEHSREEVARRAGVDPGYVDRLVELGILGPDEDDAFSPGDVL
Ga0307319_100401641	3300028722	Soil	MSEYSRQEIAQRAGVDPDYVDRLVEFGILTPDAEDTFSPGDVLRARWVQSLEQA
Ga0307282_101142311	3300028784	Soil	VAGRAGVDTAYVDRLVELGILRPGSGTTFSSGDVRRARWVQSFE
Ga0307289_100981472	3300028875	Soil	VGEHSREEVARRAGVDPGYVDRLVELGILGPDEDDAFSSGDVLR
Ga0307289_102142112	3300028875	Soil	MHEVMLGGGVSGYTREEVAQRAGVDPEYVDRLVELGILTPATGDGFSPGDVLRA
Ga0307289_104416821	3300028875	Soil	VSGYTRQEVAQRAGVDPDYLDRLVELGILTPGAGAAFSPGDVLRARW
Ga0307277_104735781	3300028881	Soil	VSGYTRQEVARRAGVDPDYVDRLVELGILTPAAPDAFSPGDALRARWLQSLERAGVPLDGIAAAIRD
Ga0247826_101577432	3300030336	Soil	MLGGAVSGYTREEVAQRAGVDPEYLDRLVELGILTPAAGDGFSPGDALRARWLQS
Ga0299913_117039231	3300031229	Soil	MATITLMGELSRQEVARRAGVTSDYVDRLVELGVLGPNPEEAFSPGDVLRAQWVQSLEQ
Ga0307408_1010951882	3300031548	Rhizosphere	VSGYTRQEVAQRAGVDPDYVDRLVELRLLTPDATDAFSPGDALRARWLQSLERAGVPLEG
Ga0307408_1020780541	3300031548	Rhizosphere	VSGYTRQEVAQRAGVDPDYVDRLVELGILTPAAGEAFSPGDALRARWLRSLEQAGVPLHG
Ga0307405_102369923	3300031731	Rhizosphere	VSGHTRQEVAQRAGVDPGYIDRLVEFGILTPDAGGAFSS
Ga0307405_102483471	3300031731	Rhizosphere	VSGYTRQEVAQRAGVDPDYVDRLAQLGILTPAAGEAFSPGDVLRA
Ga0307405_103759191	3300031731	Rhizosphere	VSGYSRQEVARRAGVDPGYVDRLVELGILTPAAADAFSPGDALRARWVQSLERAGVPLEGVAAA
Ga0307405_115722921	3300031731	Rhizosphere	VSGYTRQEVAQRAGVDPDYIDRLVELGILTPAAADAF
Ga0307413_103951812	3300031824	Rhizosphere	MSGYTSQEVAQRAGVDPGYLDRLVELGILTPAAGARFSPGDVLRARWVQSLEQAGVPLEG
Ga0307410_107717892	3300031852	Rhizosphere	VSGYSRQEVAQRAGVGPDYIDRLVELGVLTSRAGDVFSPGDVLRARWLHSFEGAG
Ga0307407_104560411	3300031903	Rhizosphere	VSGYTRQEVAQRAGVDPDYVDRLVELRLLTPDATDAFSPGDALRARWLQSLERAGVPLEGLATAIRD
Ga0307409_1022902112	3300031995	Rhizosphere	VSGYTRQEVAQRAGVDPDYVDRLVELGILTPAAGEAFSPGDALRARWLRSLEQAGVPLDGVAAAIRDGSLS
Ga0307409_1028426741	3300031995	Rhizosphere	VSRYTRQEVAQRAGVDPGYVDRLVTLGILTPAAADAFTPGDALRARWLQSLERAGVP
Ga0307416_1004474642	3300032002	Rhizosphere	VSGYTRQEVAQRAGVDPDYVDRLVELRLLTPDATDAFSPGDALRA
Ga0307416_1009947842	3300032002	Rhizosphere	VSRYSRQEVAQRAGVDPDYLDRLVELGILTPGAGDAF
Ga0307416_1010817663	3300032002	Rhizosphere	VSRYTRQEVAQRAGVDPGYVDRLVTLGILTPAATDAFTPGDALRARWLQSLERAGVPLDGMAAAVRDG
Ga0307416_1015527431	3300032002	Rhizosphere	VSGYTRQEVAQRAGVDPDYIDRLVELGILTPAAADAFSPGDALRARWLR
Ga0307414_102314441	3300032004	Rhizosphere	MLRSVSGYSRQEVAQRAGVGPDYIDRLVELGVLTPRAGDVFSPGD
Ga0307414_109888951	3300032004	Rhizosphere	VSGYPRQEVAQRAGVDPDYIDRLVDLGILTPAAGGAF
Ga0307411_111725632	3300032005	Rhizosphere	MSGYTSQEVAQRAGVDPGYLDRLVELGILTPAAGARFSPGDVLRARWVQSLEQAGVPLEGMAA
Ga0326721_106942531	3300032080	Soil	VSGYLRQEVAQRAGVDPGYVDRLVELGILTPAAGDAFSPGDVL
Ga0307415_1006796183	3300032126	Rhizosphere	VSGHTRQEVAQRAGVDPGYIDRLVELGILTPDAGAAFSPGDVLRARWLQSLE
Ga0268251_101935542	3300032159	Agave	MLRSVSGYSRQEVAQRAGVDPDYVDRLVEVGILTPDAGEAFKPGDVLRA
Ga0247830_102662412	3300033551	Soil	VGEHSRQEMAARAGVDPDYVDRLVELGFLSPGSGNTFSAGDVRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093830

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences